Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457140 | XP_013450874.1 | 57.407 | 162 | 16 | 1 | 46 | 154 | 145 | 306 | 8.79e-49 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457140 | sp|Q4F883|SG101_ARATH | 56.098 | 82 | 32 | 2 | 46 | 127 | 149 | 226 | 1.91e-20 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457140 | A0A072U5B0 | 57.407 | 162 | 16 | 1 | 46 | 154 | 145 | 306 | 4.20e-49 | 176 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa1457140 | 0.813216 | 2.863008e-51 | -8.615850e-47 |
| Msa1453560 | Msa1457140 | 0.803424 | 3.509992e-49 | -8.615850e-47 |
| Msa1457140 | Msa1462930 | 0.803746 | 3.008652e-49 | -8.615850e-47 |
| Msa0638070 | Msa1457140 | 0.805844 | 1.096917e-49 | -8.615850e-47 |
| Msa1276440 | Msa1457140 | 0.802681 | 4.998312e-49 | -8.615850e-47 |
| Msa1306850 | Msa1457140 | 0.803018 | 4.258666e-49 | -8.615850e-47 |
| Msa1052330 | Msa1457140 | 0.814702 | 1.346576e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457140 | MtrunA17_Chr6g0451531 | 57.407 | 162 | 16 | 1 | 46 | 154 | 145 | 306 | 8.09e-53 | 176 |
| Msa1457140 | MtrunA17_Chr6g0451561 | 56.970 | 165 | 15 | 2 | 46 | 154 | 142 | 306 | 2.23e-51 | 172 |
| Msa1457140 | MtrunA17_Chr6g0451541 | 57.229 | 166 | 17 | 2 | 46 | 158 | 145 | 309 | 6.39e-51 | 171 |
| Msa1457140 | MtrunA17_Chr3g0107671 | 73.404 | 94 | 21 | 1 | 46 | 135 | 139 | 232 | 6.97e-40 | 141 |
| Msa1457140 | MtrunA17_Chr6g0451511 | 68.235 | 85 | 23 | 1 | 46 | 126 | 139 | 223 | 5.46e-29 | 111 |
| Msa1457140 | MtrunA17_Chr3g0107661 | 77.778 | 54 | 12 | 0 | 46 | 99 | 141 | 194 | 9.13e-21 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457140 | AT5G14930.2 | 56.098 | 82 | 32 | 2 | 46 | 127 | 149 | 226 | 1.94e-21 | 90.5 |
| Msa1457140 | AT5G14930.3 | 56.098 | 82 | 32 | 2 | 46 | 127 | 149 | 226 | 4.98e-21 | 86.7 |
| Msa1457140 | AT3G52430.1 | 45.122 | 82 | 44 | 1 | 46 | 127 | 121 | 201 | 3.69e-15 | 72.4 |
Find 36 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATCACGTAGTTCTAAT+TGG | 0.247644 | tig0038499:+5314 | Msa1457140:CDS |
| GTAACTCCATTGATTGTTAC+TGG | 0.248986 | tig0038499:+5158 | Msa1457140:CDS |
| AATTACGATTCACTTGTAAT+TGG | 0.255243 | tig0038499:+5639 | Msa1457140:CDS |
| CCAATTAGAACTACGTGATA+TGG | 0.262315 | tig0038499:-5314 | None:intergenic |
| GGTTCCTATGATCACCTTGT+TGG | 0.316159 | tig0038499:-6685 | None:intergenic |
| TGATCACCTTGTTGGGTCAT+AGG | 0.329014 | tig0038499:-6677 | None:intergenic |
| GTAACAATCAATGGAGTTAC+TGG | 0.331199 | tig0038499:-5155 | None:intergenic |
| CCATTGATTGTTACTGGAAA+AGG | 0.396055 | tig0038499:+5164 | Msa1457140:CDS |
| GATCACCTTGTTGGGTCATA+GGG | 0.396059 | tig0038499:-6676 | None:intergenic |
| ATCACAAACTACATGCCTTT+CGG | 0.398239 | tig0038499:+5391 | Msa1457140:CDS |
| TAGTCTATCTTGCACAAACT+TGG | 0.405021 | tig0038499:+4605 | Msa1457140:CDS |
| ACATTTGGTTCACCTCTTGT+TGG | 0.416180 | tig0038499:+5271 | Msa1457140:CDS |
| GTAGTGCTGCGAAATATCTT+TGG | 0.420574 | tig0038499:+4628 | Msa1457140:CDS |
| CGACCACTATGCATCACATT+TGG | 0.424066 | tig0038499:+5256 | Msa1457140:CDS |
| GTTCACCTCTTGTTGGTGAC+AGG | 0.438927 | tig0038499:+5278 | Msa1457140:CDS |
| ATTGTTACTGGAAAAGGCCT+TGG | 0.443639 | tig0038499:+5170 | Msa1457140:CDS |
| GTTCCTATGATCACCTTGTT+GGG | 0.447615 | tig0038499:-6684 | None:intergenic |
| CTTCTCTGCTGGCAGGAGAC+AGG | 0.459312 | tig0038499:+5613 | Msa1457140:intron |
| CTTGCAATGATCCACTTCCT+AGG | 0.466767 | tig0038499:+5362 | Msa1457140:CDS |
| TGTTGGGTCATAGGGGTCAA+AGG | 0.494738 | tig0038499:-6668 | None:intergenic |
| TTGCAGTTGCAGAGAACACT+AGG | 0.508408 | tig0038499:+5669 | Msa1457140:CDS |
| GTGATGAATCGCCTAGGAAG+TGG | 0.523803 | tig0038499:-5373 | None:intergenic |
| GTTGGGTCATAGGGGTCAAA+GGG | 0.524900 | tig0038499:-6667 | None:intergenic |
| TGAATCAGAACAAAAGAGAA+AGG | 0.528847 | tig0038499:-5416 | None:intergenic |
| AGTCTATCTTGCACAAACTT+GGG | 0.531152 | tig0038499:+4606 | Msa1457140:CDS |
| AGGATTGACATCACACATGC+TGG | 0.559723 | tig0038499:+5689 | Msa1457140:CDS |
| GGTCAAAGGGATCATCGCAC+CGG | 0.592875 | tig0038499:-6654 | None:intergenic |
| ATATCACTATTAGACAACAT+TGG | 0.614599 | tig0038499:+5220 | Msa1457140:CDS |
| AACTTCCTGTCACCAACAAG+AGG | 0.623157 | tig0038499:-5283 | None:intergenic |
| TACTGGAAAAGGCCTTGGAG+AGG | 0.624185 | tig0038499:+5175 | Msa1457140:CDS |
| TAGTTTGTGATGAATCGCCT+AGG | 0.624261 | tig0038499:-5379 | None:intergenic |
| GAAGCTATTGATCCTCTCCA+AGG | 0.630858 | tig0038499:-5187 | None:intergenic |
| CAAAAGAGAAAGGTTCCGAA+AGG | 0.642724 | tig0038499:-5406 | None:intergenic |
| ATCACCTTGTTGGGTCATAG+GGG | 0.649707 | tig0038499:-6675 | None:intergenic |
| TTGACCCCTATGACCCAACA+AGG | 0.652845 | tig0038499:+6671 | Msa1457140:CDS |
| GAACCAAATGTGATGCATAG+TGG | 0.665505 | tig0038499:-5259 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACAAAAAATTCA+AGG | + | tig0038499:5525-5544 | Msa1457140:intron | 10.0% |
| !! | TAGATAATTAAAGATATTAA+TGG | + | tig0038499:6321-6340 | Msa1457140:intron | 10.0% |
| !! | AAAAAAAAACAAAAAATTCA+AGG | + | tig0038499:5525-5544 | Msa1457140:intron | 10.0% |
| !! | TAGATAATTAAAGATATTAA+TGG | + | tig0038499:6321-6340 | Msa1457140:intron | 10.0% |
| !! | TATACATTAGTTAAAAAGTA+TGG | - | tig0038499:6217-6236 | None:intergenic | 15.0% |
| !! | TATACATTAGTTAAAAAGTA+TGG | - | tig0038499:6217-6236 | None:intergenic | 15.0% |
| !! | TAAAAATAAGAGAGCTTATA+TGG | + | tig0038499:4836-4855 | Msa1457140:intron | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | tig0038499:4880-4899 | None:intergenic | 20.0% |
| !! | ATTATTTCCAAATTAGAATC+AGG | - | tig0038499:5463-5482 | None:intergenic | 20.0% |
| !! | TCATTTAATTAAACCACATT+AGG | + | tig0038499:5751-5770 | Msa1457140:intron | 20.0% |
| !! | TGTTATAGAAATAACTTACA+TGG | - | tig0038499:5826-5845 | None:intergenic | 20.0% |
| !! | TATCTACTAATATAAACACT+TGG | - | tig0038499:5955-5974 | None:intergenic | 20.0% |
| !! | ATAGTACATATTGCAAAAAT+TGG | - | tig0038499:6176-6195 | None:intergenic | 20.0% |
| !! | TAAAAATAAGAGAGCTTATA+TGG | + | tig0038499:4836-4855 | Msa1457140:intron | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | tig0038499:4880-4899 | None:intergenic | 20.0% |
| !! | ATTATTTCCAAATTAGAATC+AGG | - | tig0038499:5463-5482 | None:intergenic | 20.0% |
| !! | TCATTTAATTAAACCACATT+AGG | + | tig0038499:5751-5770 | Msa1457140:intron | 20.0% |
| !! | TGTTATAGAAATAACTTACA+TGG | - | tig0038499:5826-5845 | None:intergenic | 20.0% |
| !! | TATCTACTAATATAAACACT+TGG | - | tig0038499:5955-5974 | None:intergenic | 20.0% |
| !! | ATAGTACATATTGCAAAAAT+TGG | - | tig0038499:6176-6195 | None:intergenic | 20.0% |
| !! | GTGATTTCGATTTTGTTAAA+AGG | + | tig0038499:4653-4672 | Msa1457140:intron | 25.0% |
| !! | AGAAAAACAATAGTTCCTTT+TGG | + | tig0038499:4690-4709 | Msa1457140:intron | 25.0% |
| ! | ATATTTATATGCTAGTGTGT+AGG | + | tig0038499:4737-4756 | Msa1457140:intron | 25.0% |
| ! | TAGTGTGTAGGATAAAAATA+TGG | + | tig0038499:4749-4768 | Msa1457140:intron | 25.0% |
| ! | TGTAGGATAAAAATATGGAA+AGG | + | tig0038499:4754-4773 | Msa1457140:intron | 25.0% |
| ! | GTAGGATAAAAATATGGAAA+GGG | + | tig0038499:4755-4774 | Msa1457140:intron | 25.0% |
| ! | TAGGATAAAAATATGGAAAG+GGG | + | tig0038499:4756-4775 | Msa1457140:intron | 25.0% |
| !!! | ATATAAGTTGTTTTCCTAAG+CGG | - | tig0038499:4921-4940 | None:intergenic | 25.0% |
| ! | CAGTCATCTTATAACAATTA+TGG | + | tig0038499:5013-5032 | Msa1457140:intron | 25.0% |
| !! | ACAATCTTAATGCAGATTTT+AGG | + | tig0038499:5125-5144 | Msa1457140:intron | 25.0% |
| ! | ATATCACTATTAGACAACAT+TGG | + | tig0038499:5220-5239 | Msa1457140:CDS | 25.0% |
| ! | AATTACGATTCACTTGTAAT+TGG | + | tig0038499:5639-5658 | Msa1457140:CDS | 25.0% |
| ! | TTAATTAAACCACATTAGGT+TGG | + | tig0038499:5755-5774 | Msa1457140:intron | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | - | tig0038499:6158-6177 | None:intergenic | 25.0% |
| !!! | CTTGGACATTTATTTTGAAA+CGG | + | tig0038499:6379-6398 | Msa1457140:intron | 25.0% |
| ! | TTAATACAACACATTGAGTT+AGG | + | tig0038499:6523-6542 | Msa1457140:intron | 25.0% |
| ! | TTTGTTTGATGTACATGAAA+AGG | - | tig0038499:6576-6595 | None:intergenic | 25.0% |
| !! | GTGATTTCGATTTTGTTAAA+AGG | + | tig0038499:4653-4672 | Msa1457140:intron | 25.0% |
| !! | AGAAAAACAATAGTTCCTTT+TGG | + | tig0038499:4690-4709 | Msa1457140:intron | 25.0% |
| ! | ATATTTATATGCTAGTGTGT+AGG | + | tig0038499:4737-4756 | Msa1457140:intron | 25.0% |
| ! | TAGTGTGTAGGATAAAAATA+TGG | + | tig0038499:4749-4768 | Msa1457140:intron | 25.0% |
| ! | TGTAGGATAAAAATATGGAA+AGG | + | tig0038499:4754-4773 | Msa1457140:intron | 25.0% |
| ! | GTAGGATAAAAATATGGAAA+GGG | + | tig0038499:4755-4774 | Msa1457140:intron | 25.0% |
| ! | TAGGATAAAAATATGGAAAG+GGG | + | tig0038499:4756-4775 | Msa1457140:intron | 25.0% |
| !!! | ATATAAGTTGTTTTCCTAAG+CGG | - | tig0038499:4921-4940 | None:intergenic | 25.0% |
| ! | CAGTCATCTTATAACAATTA+TGG | + | tig0038499:5013-5032 | Msa1457140:intron | 25.0% |
| !! | ACAATCTTAATGCAGATTTT+AGG | + | tig0038499:5125-5144 | Msa1457140:intron | 25.0% |
| ! | ATATCACTATTAGACAACAT+TGG | + | tig0038499:5220-5239 | Msa1457140:CDS | 25.0% |
| ! | AATTACGATTCACTTGTAAT+TGG | + | tig0038499:5639-5658 | Msa1457140:CDS | 25.0% |
| ! | TTAATTAAACCACATTAGGT+TGG | + | tig0038499:5755-5774 | Msa1457140:intron | 25.0% |
| !!! | ATTGGACATGTATTTTGAAA+CGG | - | tig0038499:6158-6177 | None:intergenic | 25.0% |
| !!! | CTTGGACATTTATTTTGAAA+CGG | + | tig0038499:6379-6398 | Msa1457140:intron | 25.0% |
| ! | TTAATACAACACATTGAGTT+AGG | + | tig0038499:6523-6542 | Msa1457140:intron | 25.0% |
| ! | TTTGTTTGATGTACATGAAA+AGG | - | tig0038499:6576-6595 | None:intergenic | 25.0% |
| ! | GAATTACCTAGATTAACTTG+TGG | + | tig0038499:4786-4805 | Msa1457140:intron | 30.0% |
| GAAAACAACTTATGGATATG+TGG | - | tig0038499:4872-4891 | None:intergenic | 30.0% | |
| TGTTATAAGATGACTGTGTT+TGG | - | tig0038499:5009-5028 | None:intergenic | 30.0% | |
| GCATTAAGATTGTTGCATAA+AGG | - | tig0038499:5118-5137 | None:intergenic | 30.0% | |
| TGAATCAGAACAAAAGAGAA+AGG | - | tig0038499:5419-5438 | None:intergenic | 30.0% | |
| ! | TTTCTCTTTTGTTCTGATTC+AGG | + | tig0038499:5418-5437 | Msa1457140:CDS | 30.0% |
| TGAGAATCCTGATTCTAATT+TGG | + | tig0038499:5453-5472 | Msa1457140:intron | 30.0% | |
| AAAATGCATGGACAAAATCA+AGG | + | tig0038499:5496-5515 | Msa1457140:intron | 30.0% | |
| GATCAGATTCTAGTAGTTAT+TGG | + | tig0038499:5782-5801 | Msa1457140:intron | 30.0% | |
| ! | AGATGTTTTCGTAAACTATC+TGG | + | tig0038499:5888-5907 | Msa1457140:intron | 30.0% |
| ! | GATGTTTTCGTAAACTATCT+GGG | + | tig0038499:5889-5908 | Msa1457140:intron | 30.0% |
| ATCCAAACAGACTTCAAAAT+TGG | + | tig0038499:6020-6039 | Msa1457140:intron | 30.0% | |
| !!! | AACCAATTTTGAAGTCTGTT+TGG | - | tig0038499:6025-6044 | None:intergenic | 30.0% |
| !!! | GACATTTATTTTGAAACGGA+GGG | + | tig0038499:6383-6402 | Msa1457140:intron | 30.0% |
| ! | GTACATGCTATTCTAAAAAC+TGG | + | tig0038499:6407-6426 | Msa1457140:intron | 30.0% |
| TTGTATGATTGTTCAAGATC+CGG | + | tig0038499:6635-6654 | Msa1457140:intron | 30.0% | |
| ! | GAATTACCTAGATTAACTTG+TGG | + | tig0038499:4786-4805 | Msa1457140:intron | 30.0% |
| GAAAACAACTTATGGATATG+TGG | - | tig0038499:4872-4891 | None:intergenic | 30.0% | |
| TGTTATAAGATGACTGTGTT+TGG | - | tig0038499:5009-5028 | None:intergenic | 30.0% | |
| GCATTAAGATTGTTGCATAA+AGG | - | tig0038499:5118-5137 | None:intergenic | 30.0% | |
| TGAATCAGAACAAAAGAGAA+AGG | - | tig0038499:5419-5438 | None:intergenic | 30.0% | |
| ! | TTTCTCTTTTGTTCTGATTC+AGG | + | tig0038499:5418-5437 | Msa1457140:CDS | 30.0% |
| TGAGAATCCTGATTCTAATT+TGG | + | tig0038499:5453-5472 | Msa1457140:intron | 30.0% | |
| AAAATGCATGGACAAAATCA+AGG | + | tig0038499:5496-5515 | Msa1457140:intron | 30.0% | |
| GATCAGATTCTAGTAGTTAT+TGG | + | tig0038499:5782-5801 | Msa1457140:intron | 30.0% | |
| ! | AGATGTTTTCGTAAACTATC+TGG | + | tig0038499:5888-5907 | Msa1457140:intron | 30.0% |
| ! | GATGTTTTCGTAAACTATCT+GGG | + | tig0038499:5889-5908 | Msa1457140:intron | 30.0% |
| ATCCAAACAGACTTCAAAAT+TGG | + | tig0038499:6020-6039 | Msa1457140:intron | 30.0% | |
| !!! | AACCAATTTTGAAGTCTGTT+TGG | - | tig0038499:6025-6044 | None:intergenic | 30.0% |
| !!! | GACATTTATTTTGAAACGGA+GGG | + | tig0038499:6383-6402 | Msa1457140:intron | 30.0% |
| ! | GTACATGCTATTCTAAAAAC+TGG | + | tig0038499:6407-6426 | Msa1457140:intron | 30.0% |
| TTGTATGATTGTTCAAGATC+CGG | + | tig0038499:6635-6654 | Msa1457140:intron | 30.0% | |
| TAGTCTATCTTGCACAAACT+TGG | + | tig0038499:4605-4624 | Msa1457140:CDS | 35.0% | |
| AGTCTATCTTGCACAAACTT+GGG | + | tig0038499:4606-4625 | Msa1457140:CDS | 35.0% | |
| AAATAGCTCGTTTCTCCAAA+AGG | - | tig0038499:4708-4727 | None:intergenic | 35.0% | |
| AAATATGGAAAGGGGTTACT+TGG | + | tig0038499:4764-4783 | Msa1457140:intron | 35.0% | |
| AAGCTTCCACAAGTTAATCT+AGG | - | tig0038499:4795-4814 | None:intergenic | 35.0% | |
| CAACTTATGGATATGTGGTA+AGG | - | tig0038499:4867-4886 | None:intergenic | 35.0% | |
| TATGCATATTCCTAGCTTCT+AGG | + | tig0038499:5067-5086 | Msa1457140:intron | 35.0% | |
| ACAATATATGCCTAGAAGCT+AGG | - | tig0038499:5080-5099 | None:intergenic | 35.0% | |
| GTAACAATCAATGGAGTTAC+TGG | - | tig0038499:5158-5177 | None:intergenic | 35.0% | |
| ! | GTAACTCCATTGATTGTTAC+TGG | + | tig0038499:5158-5177 | Msa1457140:CDS | 35.0% |
| ! | CCTTTTCCAGTAACAATCAA+TGG | - | tig0038499:5167-5186 | None:intergenic | 35.0% |
| ! | CCATTGATTGTTACTGGAAA+AGG | + | tig0038499:5164-5183 | Msa1457140:CDS | 35.0% |
| CCAATTAGAACTACGTGATA+TGG | - | tig0038499:5317-5336 | None:intergenic | 35.0% | |
| !! | CCATATCACGTAGTTCTAAT+TGG | + | tig0038499:5314-5333 | Msa1457140:CDS | 35.0% |
| ATCACAAACTACATGCCTTT+CGG | + | tig0038499:5391-5410 | Msa1457140:CDS | 35.0% | |
| GTGACATTAAGCAAAATGCA+TGG | + | tig0038499:5484-5503 | Msa1457140:intron | 35.0% | |
| GGGAATTTAATCGAAGAACT+CGG | + | tig0038499:5567-5586 | Msa1457140:intron | 35.0% | |
| TGATCTAAACCAACCTAATG+TGG | - | tig0038499:5767-5786 | None:intergenic | 35.0% | |
| TTAGTTTATCCCCACTTAGT+GGG | - | tig0038499:6001-6020 | None:intergenic | 35.0% | |
| ! | ATTAGTTTATCCCCACTTAG+TGG | - | tig0038499:6002-6021 | None:intergenic | 35.0% |
| CATATGTGAAGTGATTGACT+TGG | + | tig0038499:6361-6380 | Msa1457140:intron | 35.0% | |
| !!! | GGACATTTATTTTGAAACGG+AGG | + | tig0038499:6382-6401 | Msa1457140:intron | 35.0% |
| ACAACACATTGAGTTAGGAT+AGG | + | tig0038499:6528-6547 | Msa1457140:intron | 35.0% | |
| ! | TGAGAGAAACATCACACTTT+TGG | - | tig0038499:6614-6633 | None:intergenic | 35.0% |
| TAGTCTATCTTGCACAAACT+TGG | + | tig0038499:4605-4624 | Msa1457140:CDS | 35.0% | |
| AGTCTATCTTGCACAAACTT+GGG | + | tig0038499:4606-4625 | Msa1457140:CDS | 35.0% | |
| AAATAGCTCGTTTCTCCAAA+AGG | - | tig0038499:4708-4727 | None:intergenic | 35.0% | |
| AAATATGGAAAGGGGTTACT+TGG | + | tig0038499:4764-4783 | Msa1457140:intron | 35.0% | |
| AAGCTTCCACAAGTTAATCT+AGG | - | tig0038499:4795-4814 | None:intergenic | 35.0% | |
| CAACTTATGGATATGTGGTA+AGG | - | tig0038499:4867-4886 | None:intergenic | 35.0% | |
| TATGCATATTCCTAGCTTCT+AGG | + | tig0038499:5067-5086 | Msa1457140:intron | 35.0% | |
| ACAATATATGCCTAGAAGCT+AGG | - | tig0038499:5080-5099 | None:intergenic | 35.0% | |
| GTAACAATCAATGGAGTTAC+TGG | - | tig0038499:5158-5177 | None:intergenic | 35.0% | |
| ! | GTAACTCCATTGATTGTTAC+TGG | + | tig0038499:5158-5177 | Msa1457140:CDS | 35.0% |
| ! | CCTTTTCCAGTAACAATCAA+TGG | - | tig0038499:5167-5186 | None:intergenic | 35.0% |
| ! | CCATTGATTGTTACTGGAAA+AGG | + | tig0038499:5164-5183 | Msa1457140:CDS | 35.0% |
| CCAATTAGAACTACGTGATA+TGG | - | tig0038499:5317-5336 | None:intergenic | 35.0% | |
| !! | CCATATCACGTAGTTCTAAT+TGG | + | tig0038499:5314-5333 | Msa1457140:CDS | 35.0% |
| ATCACAAACTACATGCCTTT+CGG | + | tig0038499:5391-5410 | Msa1457140:CDS | 35.0% | |
| GTGACATTAAGCAAAATGCA+TGG | + | tig0038499:5484-5503 | Msa1457140:intron | 35.0% | |
| GGGAATTTAATCGAAGAACT+CGG | + | tig0038499:5567-5586 | Msa1457140:intron | 35.0% | |
| TGATCTAAACCAACCTAATG+TGG | - | tig0038499:5767-5786 | None:intergenic | 35.0% | |
| TTAGTTTATCCCCACTTAGT+GGG | - | tig0038499:6001-6020 | None:intergenic | 35.0% | |
| ! | ATTAGTTTATCCCCACTTAG+TGG | - | tig0038499:6002-6021 | None:intergenic | 35.0% |
| CATATGTGAAGTGATTGACT+TGG | + | tig0038499:6361-6380 | Msa1457140:intron | 35.0% | |
| !!! | GGACATTTATTTTGAAACGG+AGG | + | tig0038499:6382-6401 | Msa1457140:intron | 35.0% |
| ACAACACATTGAGTTAGGAT+AGG | + | tig0038499:6528-6547 | Msa1457140:intron | 35.0% | |
| ! | TGAGAGAAACATCACACTTT+TGG | - | tig0038499:6614-6633 | None:intergenic | 35.0% |
| !! | GAGTTGTTTTATTCTGGAGG+CGG | + | tig0038499:4573-4592 | Msa1457140:CDS | 40.0% |
| GTAGTGCTGCGAAATATCTT+TGG | + | tig0038499:4628-4647 | Msa1457140:CDS | 40.0% | |
| AAGCGGTCTTGGAAAGATTA+TGG | - | tig0038499:4904-4923 | None:intergenic | 40.0% | |
| TAATCTTTCCAAGACCGCTT+AGG | + | tig0038499:4904-4923 | Msa1457140:intron | 40.0% | |
| ATTGTTACTGGAAAAGGCCT+TGG | + | tig0038499:5170-5189 | Msa1457140:CDS | 40.0% | |
| GAACCAAATGTGATGCATAG+TGG | - | tig0038499:5262-5281 | None:intergenic | 40.0% | |
| ! | ACATTTGGTTCACCTCTTGT+TGG | + | tig0038499:5271-5290 | Msa1457140:CDS | 40.0% |
| ! | TAGTTTGTGATGAATCGCCT+AGG | - | tig0038499:5382-5401 | None:intergenic | 40.0% |
| CAAAAGAGAAAGGTTCCGAA+AGG | - | tig0038499:5409-5428 | None:intergenic | 40.0% | |
| GATTCGAATCAGCTGAGTAT+GGG | + | tig0038499:5547-5566 | Msa1457140:intron | 40.0% | |
| CGGATGTAAAACGATTGTCA+AGG | + | tig0038499:5587-5606 | Msa1457140:intron | 40.0% | |
| ! | CAAGCTTTATCCCACTAAGT+GGG | + | tig0038499:5988-6007 | Msa1457140:intron | 40.0% |
| ! | AAGCTTTATCCCACTAAGTG+GGG | + | tig0038499:5989-6008 | Msa1457140:intron | 40.0% |
| TTCAATGTATATGACCCGTG+CGG | - | tig0038499:6099-6118 | None:intergenic | 40.0% | |
| !! | GAGTTGTTTTATTCTGGAGG+CGG | + | tig0038499:4573-4592 | Msa1457140:CDS | 40.0% |
| GTAGTGCTGCGAAATATCTT+TGG | + | tig0038499:4628-4647 | Msa1457140:CDS | 40.0% | |
| AAGCGGTCTTGGAAAGATTA+TGG | - | tig0038499:4904-4923 | None:intergenic | 40.0% | |
| TAATCTTTCCAAGACCGCTT+AGG | + | tig0038499:4904-4923 | Msa1457140:intron | 40.0% | |
| ATTGTTACTGGAAAAGGCCT+TGG | + | tig0038499:5170-5189 | Msa1457140:CDS | 40.0% | |
| GAACCAAATGTGATGCATAG+TGG | - | tig0038499:5262-5281 | None:intergenic | 40.0% | |
| ! | ACATTTGGTTCACCTCTTGT+TGG | + | tig0038499:5271-5290 | Msa1457140:CDS | 40.0% |
| ! | TAGTTTGTGATGAATCGCCT+AGG | - | tig0038499:5382-5401 | None:intergenic | 40.0% |
| CAAAAGAGAAAGGTTCCGAA+AGG | - | tig0038499:5409-5428 | None:intergenic | 40.0% | |
| GATTCGAATCAGCTGAGTAT+GGG | + | tig0038499:5547-5566 | Msa1457140:intron | 40.0% | |
| CGGATGTAAAACGATTGTCA+AGG | + | tig0038499:5587-5606 | Msa1457140:intron | 40.0% | |
| ! | CAAGCTTTATCCCACTAAGT+GGG | + | tig0038499:5988-6007 | Msa1457140:intron | 40.0% |
| ! | AAGCTTTATCCCACTAAGTG+GGG | + | tig0038499:5989-6008 | Msa1457140:intron | 40.0% |
| TTCAATGTATATGACCCGTG+CGG | - | tig0038499:6099-6118 | None:intergenic | 40.0% | |
| !! | GTTGTTTTCCTAAGCGGTCT+TGG | - | tig0038499:4915-4934 | None:intergenic | 45.0% |
| GAAGCTATTGATCCTCTCCA+AGG | - | tig0038499:5190-5209 | None:intergenic | 45.0% | |
| CGACCACTATGCATCACATT+TGG | + | tig0038499:5256-5275 | Msa1457140:CDS | 45.0% | |
| AACTTCCTGTCACCAACAAG+AGG | - | tig0038499:5286-5305 | None:intergenic | 45.0% | |
| CTTGCAATGATCCACTTCCT+AGG | + | tig0038499:5362-5381 | Msa1457140:CDS | 45.0% | |
| GGATTCGAATCAGCTGAGTA+TGG | + | tig0038499:5546-5565 | Msa1457140:intron | 45.0% | |
| TGTCAAGGATTCTTCTCTGC+TGG | + | tig0038499:5602-5621 | Msa1457140:intron | 45.0% | |
| TTGCAGTTGCAGAGAACACT+AGG | + | tig0038499:5669-5688 | Msa1457140:CDS | 45.0% | |
| AGGATTGACATCACACATGC+TGG | + | tig0038499:5689-5708 | Msa1457140:CDS | 45.0% | |
| CCACTTAGTGGGATAAAGCT+TGG | - | tig0038499:5990-6009 | None:intergenic | 45.0% | |
| ! | CCAAGCTTTATCCCACTAAG+TGG | + | tig0038499:5987-6006 | Msa1457140:intron | 45.0% |
| !! | GTTGTTTTCCTAAGCGGTCT+TGG | - | tig0038499:4915-4934 | None:intergenic | 45.0% |
| GAAGCTATTGATCCTCTCCA+AGG | - | tig0038499:5190-5209 | None:intergenic | 45.0% | |
| CGACCACTATGCATCACATT+TGG | + | tig0038499:5256-5275 | Msa1457140:CDS | 45.0% | |
| AACTTCCTGTCACCAACAAG+AGG | - | tig0038499:5286-5305 | None:intergenic | 45.0% | |
| CTTGCAATGATCCACTTCCT+AGG | + | tig0038499:5362-5381 | Msa1457140:CDS | 45.0% | |
| GGATTCGAATCAGCTGAGTA+TGG | + | tig0038499:5546-5565 | Msa1457140:intron | 45.0% | |
| TGTCAAGGATTCTTCTCTGC+TGG | + | tig0038499:5602-5621 | Msa1457140:intron | 45.0% | |
| TTGCAGTTGCAGAGAACACT+AGG | + | tig0038499:5669-5688 | Msa1457140:CDS | 45.0% | |
| AGGATTGACATCACACATGC+TGG | + | tig0038499:5689-5708 | Msa1457140:CDS | 45.0% | |
| CCACTTAGTGGGATAAAGCT+TGG | - | tig0038499:5990-6009 | None:intergenic | 45.0% | |
| ! | CCAAGCTTTATCCCACTAAG+TGG | + | tig0038499:5987-6006 | Msa1457140:intron | 45.0% |
| TACTGGAAAAGGCCTTGGAG+AGG | + | tig0038499:5175-5194 | Msa1457140:CDS | 50.0% | |
| !! | GTTCACCTCTTGTTGGTGAC+AGG | + | tig0038499:5278-5297 | Msa1457140:CDS | 50.0% |
| GTGATGAATCGCCTAGGAAG+TGG | - | tig0038499:5376-5395 | None:intergenic | 50.0% | |
| AAGGATTCTTCTCTGCTGGC+AGG | + | tig0038499:5606-5625 | Msa1457140:intron | 50.0% | |
| GTTGGGTCATAGGGGTCAAA+GGG | - | tig0038499:6670-6689 | None:intergenic | 50.0% | |
| TGTTGGGTCATAGGGGTCAA+AGG | - | tig0038499:6671-6690 | None:intergenic | 50.0% | |
| TTGACCCCTATGACCCAACA+AGG | + | tig0038499:6671-6690 | Msa1457140:CDS | 50.0% | |
| TACTGGAAAAGGCCTTGGAG+AGG | + | tig0038499:5175-5194 | Msa1457140:CDS | 50.0% | |
| !! | GTTCACCTCTTGTTGGTGAC+AGG | + | tig0038499:5278-5297 | Msa1457140:CDS | 50.0% |
| GTGATGAATCGCCTAGGAAG+TGG | - | tig0038499:5376-5395 | None:intergenic | 50.0% | |
| AAGGATTCTTCTCTGCTGGC+AGG | + | tig0038499:5606-5625 | Msa1457140:intron | 50.0% | |
| GTTGGGTCATAGGGGTCAAA+GGG | - | tig0038499:6670-6689 | None:intergenic | 50.0% | |
| TGTTGGGTCATAGGGGTCAA+AGG | - | tig0038499:6671-6690 | None:intergenic | 50.0% | |
| TTGACCCCTATGACCCAACA+AGG | + | tig0038499:6671-6690 | Msa1457140:CDS | 50.0% | |
| ATATGACCCGTGCGGTAGCA+CGG | - | tig0038499:6091-6110 | None:intergenic | 55.0% | |
| GGTCAAAGGGATCATCGCAC+CGG | - | tig0038499:6657-6676 | None:intergenic | 55.0% | |
| ATATGACCCGTGCGGTAGCA+CGG | - | tig0038499:6091-6110 | None:intergenic | 55.0% | |
| GGTCAAAGGGATCATCGCAC+CGG | - | tig0038499:6657-6676 | None:intergenic | 55.0% | |
| CTTCTCTGCTGGCAGGAGAC+AGG | + | tig0038499:5613-5632 | Msa1457140:intron | 60.0% | |
| TATGACCCGTGCGGTAGCAC+GGG | - | tig0038499:6090-6109 | None:intergenic | 60.0% | |
| CTTCTCTGCTGGCAGGAGAC+AGG | + | tig0038499:5613-5632 | Msa1457140:intron | 60.0% | |
| TATGACCCGTGCGGTAGCAC+GGG | - | tig0038499:6090-6109 | None:intergenic | 60.0% | |
| CGACTACCCGTGCTACCGCA+CGG | + | tig0038499:6081-6100 | Msa1457140:intron | 65.0% | |
| GACTACCCGTGCTACCGCAC+GGG | + | tig0038499:6082-6101 | Msa1457140:intron | 65.0% | |
| CGACTACCCGTGCTACCGCA+CGG | + | tig0038499:6081-6100 | Msa1457140:intron | 65.0% | |
| GACTACCCGTGCTACCGCAC+GGG | + | tig0038499:6082-6101 | Msa1457140:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0038499 | gene | 4571 | 6696 | 4571 | ID=Msa1457140;Name=Msa1457140 |
| tig0038499 | mRNA | 4571 | 6696 | 4571 | ID=Msa1457140-mRNA-1;Parent=Msa1457140;Name=Msa1457140-mRNA-1;_AED=0.57;_eAED=0.62;_QI=0|0|0|0.5|1|1|4|0|168 |
| tig0038499 | exon | 4571 | 4649 | 4571 | ID=Msa1457140-mRNA-1:exon:21020;Parent=Msa1457140-mRNA-1 |
| tig0038499 | exon | 5140 | 5439 | 5140 | ID=Msa1457140-mRNA-1:exon:21021;Parent=Msa1457140-mRNA-1 |
| tig0038499 | exon | 5628 | 5710 | 5628 | ID=Msa1457140-mRNA-1:exon:21022;Parent=Msa1457140-mRNA-1 |
| tig0038499 | exon | 6652 | 6696 | 6652 | ID=Msa1457140-mRNA-1:exon:21023;Parent=Msa1457140-mRNA-1 |
| tig0038499 | CDS | 4571 | 4649 | 4571 | ID=Msa1457140-mRNA-1:cds;Parent=Msa1457140-mRNA-1 |
| tig0038499 | CDS | 5140 | 5439 | 5140 | ID=Msa1457140-mRNA-1:cds;Parent=Msa1457140-mRNA-1 |
| tig0038499 | CDS | 5628 | 5710 | 5628 | ID=Msa1457140-mRNA-1:cds;Parent=Msa1457140-mRNA-1 |
| tig0038499 | CDS | 6652 | 6696 | 6652 | ID=Msa1457140-mRNA-1:cds;Parent=Msa1457140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
