AlfalfaGEDB | Msa1276440

M. sativa cultivar zhongmu-4 / Msa1276440

KEGG: K08336
GO: GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0016740 GO:0018410 GO:0019538 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1276440	sp\|Q1SF86\|ATG12_MEDTR	72.549	51	11	2	1	48	1	51	5.16e-16	68.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1276440	G7L6T7	72.549	51	11	2	1	48	1	51	1.97e-13	68.9

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa1276440	-0.808351	3.232421e-50	-8.615850e-47
Msa0001790	Msa1276440	0.824488	7.854992e-54	-8.615850e-47
Msa0003890	Msa1276440	0.800550	1.367318e-48	-8.615850e-47
Msa0004840	Msa1276440	0.804920	1.713863e-49	-8.615850e-47
Msa0004860	Msa1276440	0.803411	3.530505e-49	-8.615850e-47
Msa0004880	Msa1276440	0.808753	2.652821e-50	-8.615850e-47
Msa0005270	Msa1276440	0.840340	9.221191e-58	-8.615850e-47
Msa0006070	Msa1276440	0.809164	2.166282e-50	-8.615850e-47
Msa0006110	Msa1276440	0.827253	1.732197e-54	-8.615850e-47
Msa0007440	Msa1276440	0.806242	9.045317e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1276440	MtrunA17_Chr8g0343841	72.549	51	11	2	1	48	1	51	3.80e-17	68.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1276440	AT3G13970.3	57.407	54	20	2	3	53	2	55	2.20e-13	58.9
Msa1276440	AT3G13970.2	57.407	54	20	2	3	53	2	55	2.20e-13	58.9
Msa1276440	AT3G13970.1	58.491	53	19	2	3	52	2	54	6.27e-13	58.5
Msa1276440	AT3G13970.4	58.491	53	19	2	3	52	2	54	6.97e-13	58.2
Msa1276440	AT1G54210.3	59.615	52	18	2	4	52	5	56	1.35e-12	57.8
Msa1276440	AT1G54210.1	59.615	52	18	2	4	52	5	56	1.35e-12	57.8
Msa1276440	AT1G54210.2	86.207	29	4	0	4	32	5	33	9.00e-12	54.3

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Find 25 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGTGAAGGTTGAGAAAAC+AGG	0.515362	8_3:-11119941	Msa1276440:intron
AACTTGGATTGTTTGAGAAT+AGG	0.443789	8_3:+11119119	None:intergenic
AAGGAAAAGTACCTTGAACT+TGG	0.453341	8_3:+11119103	None:intergenic
AATTCGAAGTCGAGGCTTTA+AGG	0.218284	8_3:-11118645	Msa1276440:CDS
AGTTATGTGGCGTGACACGT+AGG	0.687465	8_3:-11119487	Msa1276440:five_prime_UTR
AGTTCTTCTTCACAGAAAAT+AGG	0.214719	8_3:-11119328	Msa1276440:intron
ATCTAGCATATAGAAAATTA+TGG	0.344959	8_3:+11118275	None:intergenic
ATCTGAAGTTTGAGAAAGGA+AGG	0.503034	8_3:-11119972	Msa1276440:five_prime_UTR
ATTCGAAGTCGAGGCTTTAA+GGG	0.402254	8_3:-11118644	Msa1276440:CDS
CGTGACACGTAGGATTGACT+AGG	0.584555	8_3:-11119477	Msa1276440:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTCAAAAATCTGGAAAAG+AGG	-	chr8_3:11118275-11118294	Msa1276440:CDS	30.0%
AAAAATCTGGAAAAGAGGAA+GGG	-	chr8_3:11118280-11118299	Msa1276440:CDS	30.0%
GATCAACCATATATGTCAAT+TGG	-	chr8_3:11118590-11118609	Msa1276440:intron	30.0%
AGTTCTTCTTCACAGAAAAT+AGG	-	chr8_3:11119010-11119029	Msa1276440:intron	30.0%
GTTCTTCTTCACAGAAAATA+GGG	-	chr8_3:11119011-11119030	Msa1276440:intron	30.0%
AACTTGGATTGTTTGAGAAT+AGG	+	chr8_3:11119222-11119241	None:intergenic	30.0%
TTGGTTATGGTTTATTTGTC+TGG	-	chr8_3:11119337-11119356	Msa1276440:intron	30.0%
GAATTGAAATTCAAGCTTCT+GGG	-	chr8_3:11119359-11119378	Msa1276440:intron	30.0%
ATAAAATAATTCCTCCAGAC+TGG	-	chr8_3:11119662-11119681	Msa1276440:intron	30.0%
TGATTGAAAAAGTTACAGGT+TGG	-	chr8_3:11119781-11119800	Msa1276440:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	11118273	11120087	11118273	ID=Msa1276440;Name=Msa1276440
chr8_3	mRNA	11118273	11120087	11118273	ID=Msa1276440-mRNA-1;Parent=Msa1276440;Name=Msa1276440-mRNA-1;_AED=0.40;_eAED=0.40;_QI=249\|0.6\|0.5\|0.66\|0.6\|0.5\|6\|0\|71
chr8_3	exon	11118273	11118329	11118273	ID=Msa1276440-mRNA-1:exon:4585;Parent=Msa1276440-mRNA-1
chr8_3	exon	11118618	11118680	11118618	ID=Msa1276440-mRNA-1:exon:4584;Parent=Msa1276440-mRNA-1
chr8_3	exon	11119115	11119173	11119115	ID=Msa1276440-mRNA-1:exon:4583;Parent=Msa1276440-mRNA-1
chr8_3	exon	11119269	11119335	11119269	ID=Msa1276440-mRNA-1:exon:4582;Parent=Msa1276440-mRNA-1
chr8_3	exon	11119451	11119523	11119451	ID=Msa1276440-mRNA-1:exon:4581;Parent=Msa1276440-mRNA-1
chr8_3	exon	11119942	11120087	11119942	ID=Msa1276440-mRNA-1:exon:4580;Parent=Msa1276440-mRNA-1
chr8_3	five_prime_UTR	11119942	11120087	11119942	ID=Msa1276440-mRNA-1:five_prime_utr;Parent=Msa1276440-mRNA-1
chr8_3	five_prime_UTR	11119451	11119523	11119451	ID=Msa1276440-mRNA-1:five_prime_utr;Parent=Msa1276440-mRNA-1
chr8_3	five_prime_UTR	11119306	11119335	11119306	ID=Msa1276440-mRNA-1:five_prime_utr;Parent=Msa1276440-mRNA-1
chr8_3	CDS	11119269	11119305	11119269	ID=Msa1276440-mRNA-1:cds;Parent=Msa1276440-mRNA-1
chr8_3	CDS	11119115	11119173	11119115	ID=Msa1276440-mRNA-1:cds;Parent=Msa1276440-mRNA-1
chr8_3	CDS	11118618	11118680	11118618	ID=Msa1276440-mRNA-1:cds;Parent=Msa1276440-mRNA-1
chr8_3	CDS	11118273	11118329	11118273	ID=Msa1276440-mRNA-1:cds;Parent=Msa1276440-mRNA-1

Gene Sequence	>Msa1276440 ATGGCTGCTGCTGAATCTCCAACTTCTGTTCGTAAAGTGGTTGTTCATCTTAGAGCCACCGGTGATGCTCCTATTCTCAAACAATCCAAGTTCAAGACTGGTATCTCAAAATTCGAAGTCGAGGCTTTAAGGGAAGAGTTCAACTCTACTCAAATAACAGATCGCGTCAAATGGGTAAATCTTTCTGACCTCCATAATTTTCTATATGCTAGATGA
Protein sequence	>Msa1276440 MAAAESPTSVRKVVVHLRATGDAPILKQSKFKTGISKFEVEALREEFNSTQITDRVKWVNLSDLHNFLYAR*