AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1276440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1276440 MtrunA17_Chr8g0343841 72.549 51 11 2 1 48 1 51 3.80e-17 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1276440 AT3G13970.3 57.407 54 20 2 3 53 2 55 2.20e-13 58.9
Msa1276440 AT3G13970.2 57.407 54 20 2 3 53 2 55 2.20e-13 58.9
Msa1276440 AT3G13970.1 58.491 53 19 2 3 52 2 54 6.27e-13 58.5
Msa1276440 AT3G13970.4 58.491 53 19 2 3 52 2 54 6.97e-13 58.2
Msa1276440 AT1G54210.3 59.615 52 18 2 4 52 5 56 1.35e-12 57.8
Msa1276440 AT1G54210.1 59.615 52 18 2 4 52 5 56 1.35e-12 57.8
Msa1276440 AT1G54210.2 86.207 29 4 0 4 32 5 33 9.00e-12 54.3

Find 25 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCTTCTTCACAGAAAAT+AGG 0.214719 8_3:-11119328 Msa1276440:intron
AATTCGAAGTCGAGGCTTTA+AGG 0.218284 8_3:-11118645 Msa1276440:CDS
TCAGTGTTCGTTCTTCTTCA+TGG 0.287098 8_3:-11119302 Msa1276440:exon
GTTCTTCTTCACAGAAAATA+GGG 0.316856 8_3:-11119327 Msa1276440:intron
ATCTAGCATATAGAAAATTA+TGG 0.344959 8_3:+11118275 None:intergenic
ATTCGAAGTCGAGGCTTTAA+GGG 0.402254 8_3:-11118644 Msa1276440:CDS
TTTATCAGGATCGCGTCAAA+TGG 0.411626 8_3:-11118315 Msa1276440:intron
AACTTGGATTGTTTGAGAAT+AGG 0.443789 8_3:+11119119 None:intergenic
AAGGAAAAGTACCTTGAACT+TGG 0.453341 8_3:+11119103 None:intergenic
TCTCAAACAATCCAAGTTCA+AGG 0.453483 8_3:-11119114 Msa1276440:intron
TAACCTTTACGAACAGAAGT+TGG 0.498862 8_3:+11119265 None:intergenic
ATCTGAAGTTTGAGAAAGGA+AGG 0.503034 8_3:-11119972 Msa1276440:five_prime_UTR
TCTCCAACTTCTGTTCGTAA+AGG 0.513941 8_3:-11119268 Msa1276440:intron
AACGTGAAGGTTGAGAAAAC+AGG 0.515362 8_3:-11119941 Msa1276440:intron
TTATCAGGATCGCGTCAAAT+GGG 0.542313 8_3:-11118314 Msa1276440:intron
TCAGATCTGAAGTTTGAGAA+AGG 0.555866 8_3:-11119976 Msa1276440:five_prime_UTR
GTTGTTCATCTTAGAGCCAC+CGG 0.557111 8_3:-11119149 Msa1276440:CDS
TTTGAGAATAGGAGCATCAC+CGG 0.562343 8_3:+11119130 None:intergenic
CGTGACACGTAGGATTGACT+AGG 0.584555 8_3:-11119477 Msa1276440:five_prime_UTR
CTGTGTGATGATGATGAAGA+AGG 0.625613 8_3:+11120011 None:intergenic
TATCTCAAAATTCGAAGTCG+AGG 0.641004 8_3:-11118653 Msa1276440:CDS
GAAGGAGAGAACGAACGTGA+AGG 0.658917 8_3:-11119954 Msa1276440:five_prime_UTR
AGTTATGTGGCGTGACACGT+AGG 0.687465 8_3:-11119487 Msa1276440:five_prime_UTR
TAGCATATAGAAAATTATGG+AGG 0.691209 8_3:+11118278 None:intergenic
GAGAATAGGAGCATCACCGG+TGG 0.697312 8_3:+11119133 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAATTCTTGATATAAT+TGG - chr8_3:11118670-11118689 Msa1276440:intron 10.0%
!! ATATAATTCTTGATATAATT+GGG - chr8_3:11118671-11118690 Msa1276440:intron 10.0%
!! AATATAATTCTTGATATAAT+TGG - chr8_3:11118670-11118689 Msa1276440:intron 10.0%
!! ATATAATTCTTGATATAATT+GGG - chr8_3:11118671-11118690 Msa1276440:intron 10.0%
!! AAAAAATAAGTATATCAAGA+GGG + chr8_3:11118570-11118589 None:intergenic 15.0%
!! GGAAGAATTAAATTATATTA+AGG - chr8_3:11118611-11118630 Msa1276440:intron 15.0%
!! GAATTAAATTATATTAAGGA+TGG - chr8_3:11118615-11118634 Msa1276440:intron 15.0%
!! TATAATTCTTGATATAATTG+GGG - chr8_3:11118672-11118691 Msa1276440:intron 15.0%
!!! TACTTTTCCTTTTTAATTAA+TGG - chr8_3:11119247-11119266 Msa1276440:intron 15.0%
!!! ACTTTTCCTTTTTAATTAAT+GGG - chr8_3:11119248-11119267 Msa1276440:intron 15.0%
!!! ATACAGATTTAAAATTAAGT+TGG + chr8_3:11119751-11119770 None:intergenic 15.0%
!! AAAAAATAAGTATATCAAGA+GGG + chr8_3:11118570-11118589 None:intergenic 15.0%
!! GGAAGAATTAAATTATATTA+AGG - chr8_3:11118611-11118630 Msa1276440:intron 15.0%
!! GAATTAAATTATATTAAGGA+TGG - chr8_3:11118615-11118634 Msa1276440:intron 15.0%
!! TATAATTCTTGATATAATTG+GGG - chr8_3:11118672-11118691 Msa1276440:intron 15.0%
!!! TACTTTTCCTTTTTAATTAA+TGG - chr8_3:11119247-11119266 Msa1276440:intron 15.0%
!!! ACTTTTCCTTTTTAATTAAT+GGG - chr8_3:11119248-11119267 Msa1276440:intron 15.0%
!!! ATACAGATTTAAAATTAAGT+TGG + chr8_3:11119751-11119770 None:intergenic 15.0%
!! CAAAAAATAAGTATATCAAG+AGG + chr8_3:11118571-11118590 None:intergenic 20.0%
!! AAAAGACCCATTAATTAAAA+AGG + chr8_3:11119257-11119276 None:intergenic 20.0%
!!! TTAGAAATGAATTGATTCTA+TGG - chr8_3:11119396-11119415 Msa1276440:intron 20.0%
!!! TTCTATGGTTTTCAATAAAT+TGG - chr8_3:11119411-11119430 Msa1276440:intron 20.0%
!!! TCTATGGTTTTCAATAAATT+GGG - chr8_3:11119412-11119431 Msa1276440:intron 20.0%
!!! ATTATTTTATATTCTTGGAC+TGG + chr8_3:11119652-11119671 None:intergenic 20.0%
!!! GAGGAATTATTTTATATTCT+TGG + chr8_3:11119657-11119676 None:intergenic 20.0%
!!! TATATGAATCTTTGAAAACA+GGG + chr8_3:11119876-11119895 None:intergenic 20.0%
!! ATCTAGCATATAGAAAATTA+TGG + chr8_3:11120066-11120085 None:intergenic 20.0%
!! CAAAAAATAAGTATATCAAG+AGG + chr8_3:11118571-11118590 None:intergenic 20.0%
!! AAAAGACCCATTAATTAAAA+AGG + chr8_3:11119257-11119276 None:intergenic 20.0%
!!! TTAGAAATGAATTGATTCTA+TGG - chr8_3:11119396-11119415 Msa1276440:intron 20.0%
!!! TTCTATGGTTTTCAATAAAT+TGG - chr8_3:11119411-11119430 Msa1276440:intron 20.0%
!!! TCTATGGTTTTCAATAAATT+GGG - chr8_3:11119412-11119431 Msa1276440:intron 20.0%
!!! ATTATTTTATATTCTTGGAC+TGG + chr8_3:11119652-11119671 None:intergenic 20.0%
!!! GAGGAATTATTTTATATTCT+TGG + chr8_3:11119657-11119676 None:intergenic 20.0%
!!! TATATGAATCTTTGAAAACA+GGG + chr8_3:11119876-11119895 None:intergenic 20.0%
!! ATCTAGCATATAGAAAATTA+TGG + chr8_3:11120066-11120085 None:intergenic 20.0%
! ATTCTTCCAATTGACATATA+TGG + chr8_3:11118599-11118618 None:intergenic 25.0%
!! TAATTCTAGAAATACACTTG+TGG - chr8_3:11118779-11118798 Msa1276440:intron 25.0%
! AAATTCAAAAAATACACAGC+TGG - chr8_3:11118818-11118837 Msa1276440:intron 25.0%
!! AATTGAGATTTTGCAAAATG+AGG - chr8_3:11118888-11118907 Msa1276440:intron 25.0%
!! TTTTTATCTTTTTGTGACAG+TGG - chr8_3:11119167-11119186 Msa1276440:intron 25.0%
! TGTTTGATTGAAAAAGTTAC+AGG - chr8_3:11119777-11119796 Msa1276440:intron 25.0%
! GTGAATACAGAAAATATTTC+AGG + chr8_3:11119814-11119833 None:intergenic 25.0%
!! ATATGAATCTTTGAAAACAG+GGG + chr8_3:11119875-11119894 None:intergenic 25.0%
!! CTATATGAATCTTTGAAAAC+AGG + chr8_3:11119877-11119896 None:intergenic 25.0%
!! CTGTTTTCAAAGATTCATAT+AGG - chr8_3:11119875-11119894 Msa1276440:intron 25.0%
! ACTGTGAAAACAGAAAAAAT+AGG - chr8_3:11119900-11119919 Msa1276440:intron 25.0%
!! AACATTTTCTCAAATCAAAC+AGG - chr8_3:11119977-11119996 Msa1276440:five_prime_UTR 25.0%
! TAGCATATAGAAAATTATGG+AGG + chr8_3:11120063-11120082 None:intergenic 25.0%
! ATTCTTCCAATTGACATATA+TGG + chr8_3:11118599-11118618 None:intergenic 25.0%
!! TAATTCTAGAAATACACTTG+TGG - chr8_3:11118779-11118798 Msa1276440:intron 25.0%
! AAATTCAAAAAATACACAGC+TGG - chr8_3:11118818-11118837 Msa1276440:intron 25.0%
!! AATTGAGATTTTGCAAAATG+AGG - chr8_3:11118888-11118907 Msa1276440:intron 25.0%
!! TTTTTATCTTTTTGTGACAG+TGG - chr8_3:11119167-11119186 Msa1276440:intron 25.0%
! TGTTTGATTGAAAAAGTTAC+AGG - chr8_3:11119777-11119796 Msa1276440:intron 25.0%
! GTGAATACAGAAAATATTTC+AGG + chr8_3:11119814-11119833 None:intergenic 25.0%
!! ATATGAATCTTTGAAAACAG+GGG + chr8_3:11119875-11119894 None:intergenic 25.0%
!! CTATATGAATCTTTGAAAAC+AGG + chr8_3:11119877-11119896 None:intergenic 25.0%
!! CTGTTTTCAAAGATTCATAT+AGG - chr8_3:11119875-11119894 Msa1276440:intron 25.0%
! ACTGTGAAAACAGAAAAAAT+AGG - chr8_3:11119900-11119919 Msa1276440:intron 25.0%
!! AACATTTTCTCAAATCAAAC+AGG - chr8_3:11119977-11119996 Msa1276440:five_prime_UTR 25.0%
! TAGCATATAGAAAATTATGG+AGG + chr8_3:11120063-11120082 None:intergenic 25.0%
TCTTCAAAAATCTGGAAAAG+AGG - chr8_3:11118275-11118294 Msa1276440:CDS 30.0%
AAAAATCTGGAAAAGAGGAA+GGG - chr8_3:11118280-11118299 Msa1276440:CDS 30.0%
! TTTTGTAATTGATGCGAATC+TGG - chr8_3:11118515-11118534 Msa1276440:intron 30.0%
GATCAACCATATATGTCAAT+TGG - chr8_3:11118590-11118609 Msa1276440:intron 30.0%
!!! GAGAAGATGATTTTCTAGTT+TGG - chr8_3:11118706-11118725 Msa1276440:intron 30.0%
! TTTGATTGTTACGAGTTTTC+TGG - chr8_3:11118743-11118762 Msa1276440:intron 30.0%
! TTGATTGTTACGAGTTTTCT+GGG - chr8_3:11118744-11118763 Msa1276440:intron 30.0%
!!! TGGCAAGTTTTTAAGTTATG+TGG - chr8_3:11118838-11118857 Msa1276440:intron 30.0%
AGTTCTTCTTCACAGAAAAT+AGG - chr8_3:11119010-11119029 Msa1276440:intron 30.0%
GTTCTTCTTCACAGAAAATA+GGG - chr8_3:11119011-11119030 Msa1276440:intron 30.0%
AACTTGGATTGTTTGAGAAT+AGG + chr8_3:11119222-11119241 None:intergenic 30.0%
TTGGTTATGGTTTATTTGTC+TGG - chr8_3:11119337-11119356 Msa1276440:intron 30.0%
GAATTGAAATTCAAGCTTCT+GGG - chr8_3:11119359-11119378 Msa1276440:intron 30.0%
ATAAAATAATTCCTCCAGAC+TGG - chr8_3:11119662-11119681 Msa1276440:intron 30.0%
TGATTGAAAAAGTTACAGGT+TGG - chr8_3:11119781-11119800 Msa1276440:intron 30.0%
! AAAAAGTTACAGGTTGGATA+AGG - chr8_3:11119787-11119806 Msa1276440:intron 30.0%
GAAAAAGAGTGAAAATAAGG+GGG + chr8_3:11119853-11119872 None:intergenic 30.0%
GGAAAAAGAGTGAAAATAAG+GGG + chr8_3:11119854-11119873 None:intergenic 30.0%
GGGAAAAAGAGTGAAAATAA+GGG + chr8_3:11119855-11119874 None:intergenic 30.0%
AGAAAAAATAGGTGCAAACA+AGG - chr8_3:11119911-11119930 Msa1276440:intron 30.0%
TCTTCAAAAATCTGGAAAAG+AGG - chr8_3:11118275-11118294 Msa1276440:CDS 30.0%
AAAAATCTGGAAAAGAGGAA+GGG - chr8_3:11118280-11118299 Msa1276440:CDS 30.0%
! TTTTGTAATTGATGCGAATC+TGG - chr8_3:11118515-11118534 Msa1276440:intron 30.0%
GATCAACCATATATGTCAAT+TGG - chr8_3:11118590-11118609 Msa1276440:intron 30.0%
!!! GAGAAGATGATTTTCTAGTT+TGG - chr8_3:11118706-11118725 Msa1276440:intron 30.0%
! TTTGATTGTTACGAGTTTTC+TGG - chr8_3:11118743-11118762 Msa1276440:intron 30.0%
! TTGATTGTTACGAGTTTTCT+GGG - chr8_3:11118744-11118763 Msa1276440:intron 30.0%
!!! TGGCAAGTTTTTAAGTTATG+TGG - chr8_3:11118838-11118857 Msa1276440:intron 30.0%
AGTTCTTCTTCACAGAAAAT+AGG - chr8_3:11119010-11119029 Msa1276440:intron 30.0%
GTTCTTCTTCACAGAAAATA+GGG - chr8_3:11119011-11119030 Msa1276440:intron 30.0%
AACTTGGATTGTTTGAGAAT+AGG + chr8_3:11119222-11119241 None:intergenic 30.0%
TTGGTTATGGTTTATTTGTC+TGG - chr8_3:11119337-11119356 Msa1276440:intron 30.0%
GAATTGAAATTCAAGCTTCT+GGG - chr8_3:11119359-11119378 Msa1276440:intron 30.0%
ATAAAATAATTCCTCCAGAC+TGG - chr8_3:11119662-11119681 Msa1276440:intron 30.0%
TGATTGAAAAAGTTACAGGT+TGG - chr8_3:11119781-11119800 Msa1276440:intron 30.0%
! AAAAAGTTACAGGTTGGATA+AGG - chr8_3:11119787-11119806 Msa1276440:intron 30.0%
GAAAAAGAGTGAAAATAAGG+GGG + chr8_3:11119853-11119872 None:intergenic 30.0%
GGAAAAAGAGTGAAAATAAG+GGG + chr8_3:11119854-11119873 None:intergenic 30.0%
GGGAAAAAGAGTGAAAATAA+GGG + chr8_3:11119855-11119874 None:intergenic 30.0%
AGAAAAAATAGGTGCAAACA+AGG - chr8_3:11119911-11119930 Msa1276440:intron 30.0%
CAAAAATCTGGAAAAGAGGA+AGG - chr8_3:11118279-11118298 Msa1276440:CDS 35.0%
! TCAGATCTGAAGTTTGAGAA+AGG - chr8_3:11118362-11118381 Msa1276440:intron 35.0%
! ATCTGAAGTTTGAGAAAGGA+AGG - chr8_3:11118366-11118385 Msa1276440:intron 35.0%
TAATTGATGCGAATCTGGTT+GGG - chr8_3:11118520-11118539 Msa1276440:intron 35.0%
AGGGATACATACAAGTTACA+CGG + chr8_3:11118551-11118570 None:intergenic 35.0%
TAACCTTTACGAACAGAAGT+TGG + chr8_3:11119076-11119095 None:intergenic 35.0%
TCTCAAACAATCCAAGTTCA+AGG - chr8_3:11119224-11119243 Msa1276440:intron 35.0%
!! AAGGAAAAGTACCTTGAACT+TGG + chr8_3:11119238-11119257 None:intergenic 35.0%
ACCAACGAACATGATCAAAA+GGG + chr8_3:11119322-11119341 None:intergenic 35.0%
AACCAACGAACATGATCAAA+AGG + chr8_3:11119323-11119342 None:intergenic 35.0%
! TTGATCATGTTCGTTGGTTA+TGG - chr8_3:11119324-11119343 Msa1276440:intron 35.0%
GGAATTGAAATTCAAGCTTC+TGG - chr8_3:11119358-11119377 Msa1276440:intron 35.0%
CTTAGATAACGCATTTGGAT+TGG + chr8_3:11119593-11119612 None:intergenic 35.0%
CAATCCAAATGCGTTATCTA+AGG - chr8_3:11119591-11119610 Msa1276440:intron 35.0%
ATGTCCTTAGATAACGCATT+TGG + chr8_3:11119598-11119617 None:intergenic 35.0%
TATCTCAAAATTCGAAGTCG+AGG - chr8_3:11119685-11119704 Msa1276440:intron 35.0%
GGGGAAAAAGAGTGAAAATA+AGG + chr8_3:11119856-11119875 None:intergenic 35.0%
ATAAAAAGCAAGTGCATCGA+GGG + chr8_3:11120008-11120027 None:intergenic 35.0%
CAAAAATCTGGAAAAGAGGA+AGG - chr8_3:11118279-11118298 Msa1276440:CDS 35.0%
! TCAGATCTGAAGTTTGAGAA+AGG - chr8_3:11118362-11118381 Msa1276440:intron 35.0%
! ATCTGAAGTTTGAGAAAGGA+AGG - chr8_3:11118366-11118385 Msa1276440:intron 35.0%
TAATTGATGCGAATCTGGTT+GGG - chr8_3:11118520-11118539 Msa1276440:intron 35.0%
AGGGATACATACAAGTTACA+CGG + chr8_3:11118551-11118570 None:intergenic 35.0%
TAACCTTTACGAACAGAAGT+TGG + chr8_3:11119076-11119095 None:intergenic 35.0%
TCTCAAACAATCCAAGTTCA+AGG - chr8_3:11119224-11119243 Msa1276440:intron 35.0%
!! AAGGAAAAGTACCTTGAACT+TGG + chr8_3:11119238-11119257 None:intergenic 35.0%
ACCAACGAACATGATCAAAA+GGG + chr8_3:11119322-11119341 None:intergenic 35.0%
AACCAACGAACATGATCAAA+AGG + chr8_3:11119323-11119342 None:intergenic 35.0%
! TTGATCATGTTCGTTGGTTA+TGG - chr8_3:11119324-11119343 Msa1276440:intron 35.0%
GGAATTGAAATTCAAGCTTC+TGG - chr8_3:11119358-11119377 Msa1276440:intron 35.0%
CTTAGATAACGCATTTGGAT+TGG + chr8_3:11119593-11119612 None:intergenic 35.0%
CAATCCAAATGCGTTATCTA+AGG - chr8_3:11119591-11119610 Msa1276440:intron 35.0%
ATGTCCTTAGATAACGCATT+TGG + chr8_3:11119598-11119617 None:intergenic 35.0%
TATCTCAAAATTCGAAGTCG+AGG - chr8_3:11119685-11119704 Msa1276440:intron 35.0%
GGGGAAAAAGAGTGAAAATA+AGG + chr8_3:11119856-11119875 None:intergenic 35.0%
ATAAAAAGCAAGTGCATCGA+GGG + chr8_3:11120008-11120027 None:intergenic 35.0%
! CTGTGTGATGATGATGAAGA+AGG + chr8_3:11118330-11118349 None:intergenic 40.0%
AACGTGAAGGTTGAGAAAAC+AGG - chr8_3:11118397-11118416 Msa1276440:intron 40.0%
GTAATTGATGCGAATCTGGT+TGG - chr8_3:11118519-11118538 Msa1276440:intron 40.0%
!! TCTAGTTTGGTGCTTGAAGA+TGG - chr8_3:11118719-11118738 Msa1276440:intron 40.0%
!! CTAGTTTGGTGCTTGAAGAT+GGG - chr8_3:11118720-11118739 Msa1276440:intron 40.0%
TGCTACTGTTGCAAACTTAG+AGG - chr8_3:11118923-11118942 Msa1276440:intron 40.0%
GCTACTGTTGCAAACTTAGA+GGG - chr8_3:11118924-11118943 Msa1276440:intron 40.0%
TCAGTGTTCGTTCTTCTTCA+TGG - chr8_3:11119036-11119055 Msa1276440:intron 40.0%
TCTCCAACTTCTGTTCGTAA+AGG - chr8_3:11119070-11119089 Msa1276440:intron 40.0%
!! TTTGAGAATAGGAGCATCAC+CGG + chr8_3:11119211-11119230 None:intergenic 40.0%
! ACCCTTTTGATCATGTTCGT+TGG - chr8_3:11119318-11119337 Msa1276440:intron 40.0%
TCTAAGCGAAGAAGAAAGCA+AGG - chr8_3:11119618-11119637 Msa1276440:intron 40.0%
!!! ATTTTGAGATACCAGTCTGG+AGG + chr8_3:11119676-11119695 None:intergenic 40.0%
!!! CGAATTTTGAGATACCAGTC+TGG + chr8_3:11119679-11119698 None:intergenic 40.0%
AATTCGAAGTCGAGGCTTTA+AGG - chr8_3:11119693-11119712 Msa1276440:intron 40.0%
! ATTCGAAGTCGAGGCTTTAA+GGG - chr8_3:11119694-11119713 Msa1276440:intron 40.0%
GATAAAAAGCAAGTGCATCG+AGG + chr8_3:11120009-11120028 None:intergenic 40.0%
!!! CGATGCACTTGCTTTTTATC+AGG - chr8_3:11120009-11120028 Msa1276440:five_prime_UTR 40.0%
TTTATCAGGATCGCGTCAAA+TGG - chr8_3:11120023-11120042 Msa1276440:five_prime_UTR 40.0%
TTATCAGGATCGCGTCAAAT+GGG - chr8_3:11120024-11120043 Msa1276440:five_prime_UTR 40.0%
! CTGTGTGATGATGATGAAGA+AGG + chr8_3:11118330-11118349 None:intergenic 40.0%
AACGTGAAGGTTGAGAAAAC+AGG - chr8_3:11118397-11118416 Msa1276440:intron 40.0%
GTAATTGATGCGAATCTGGT+TGG - chr8_3:11118519-11118538 Msa1276440:intron 40.0%
!! TCTAGTTTGGTGCTTGAAGA+TGG - chr8_3:11118719-11118738 Msa1276440:intron 40.0%
!! CTAGTTTGGTGCTTGAAGAT+GGG - chr8_3:11118720-11118739 Msa1276440:intron 40.0%
TGCTACTGTTGCAAACTTAG+AGG - chr8_3:11118923-11118942 Msa1276440:intron 40.0%
GCTACTGTTGCAAACTTAGA+GGG - chr8_3:11118924-11118943 Msa1276440:intron 40.0%
TCAGTGTTCGTTCTTCTTCA+TGG - chr8_3:11119036-11119055 Msa1276440:intron 40.0%
TCTCCAACTTCTGTTCGTAA+AGG - chr8_3:11119070-11119089 Msa1276440:intron 40.0%
!! TTTGAGAATAGGAGCATCAC+CGG + chr8_3:11119211-11119230 None:intergenic 40.0%
! ACCCTTTTGATCATGTTCGT+TGG - chr8_3:11119318-11119337 Msa1276440:intron 40.0%
TCTAAGCGAAGAAGAAAGCA+AGG - chr8_3:11119618-11119637 Msa1276440:intron 40.0%
!!! ATTTTGAGATACCAGTCTGG+AGG + chr8_3:11119676-11119695 None:intergenic 40.0%
!!! CGAATTTTGAGATACCAGTC+TGG + chr8_3:11119679-11119698 None:intergenic 40.0%
AATTCGAAGTCGAGGCTTTA+AGG - chr8_3:11119693-11119712 Msa1276440:intron 40.0%
! ATTCGAAGTCGAGGCTTTAA+GGG - chr8_3:11119694-11119713 Msa1276440:intron 40.0%
GATAAAAAGCAAGTGCATCG+AGG + chr8_3:11120009-11120028 None:intergenic 40.0%
!!! CGATGCACTTGCTTTTTATC+AGG - chr8_3:11120009-11120028 Msa1276440:five_prime_UTR 40.0%
TTTATCAGGATCGCGTCAAA+TGG - chr8_3:11120023-11120042 Msa1276440:five_prime_UTR 40.0%
TTATCAGGATCGCGTCAAAT+GGG - chr8_3:11120024-11120043 Msa1276440:five_prime_UTR 40.0%
GGTTGAGAAAACAGGTCTGA+AGG - chr8_3:11118405-11118424 Msa1276440:intron 45.0%
GTTGTTCATCTTAGAGCCAC+CGG - chr8_3:11119189-11119208 Msa1276440:intron 45.0%
GGTTGAGAAAACAGGTCTGA+AGG - chr8_3:11118405-11118424 Msa1276440:intron 45.0%
GTTGTTCATCTTAGAGCCAC+CGG - chr8_3:11119189-11119208 Msa1276440:intron 45.0%
GAAGGAGAGAACGAACGTGA+AGG - chr8_3:11118384-11118403 Msa1276440:intron 50.0%
AGTTATGTGGCGTGACACGT+AGG - chr8_3:11118851-11118870 Msa1276440:intron 50.0%
CGTGACACGTAGGATTGACT+AGG - chr8_3:11118861-11118880 Msa1276440:intron 50.0%
GAAGGAGAGAACGAACGTGA+AGG - chr8_3:11118384-11118403 Msa1276440:intron 50.0%
AGTTATGTGGCGTGACACGT+AGG - chr8_3:11118851-11118870 Msa1276440:intron 50.0%
CGTGACACGTAGGATTGACT+AGG - chr8_3:11118861-11118880 Msa1276440:intron 50.0%
!! GAGAATAGGAGCATCACCGG+TGG + chr8_3:11119208-11119227 None:intergenic 55.0%
!! GAGAATAGGAGCATCACCGG+TGG + chr8_3:11119208-11119227 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 11118273 11120087 11118273 ID=Msa1276440;Name=Msa1276440
chr8_3 mRNA 11118273 11120087 11118273 ID=Msa1276440-mRNA-1;Parent=Msa1276440;Name=Msa1276440-mRNA-1;_AED=0.40;_eAED=0.40;_QI=249|0.6|0.5|0.66|0.6|0.5|6|0|71
chr8_3 exon 11118273 11118329 11118273 ID=Msa1276440-mRNA-1:exon:4585;Parent=Msa1276440-mRNA-1
chr8_3 exon 11118618 11118680 11118618 ID=Msa1276440-mRNA-1:exon:4584;Parent=Msa1276440-mRNA-1
chr8_3 exon 11119115 11119173 11119115 ID=Msa1276440-mRNA-1:exon:4583;Parent=Msa1276440-mRNA-1
chr8_3 exon 11119269 11119335 11119269 ID=Msa1276440-mRNA-1:exon:4582;Parent=Msa1276440-mRNA-1
chr8_3 exon 11119451 11119523 11119451 ID=Msa1276440-mRNA-1:exon:4581;Parent=Msa1276440-mRNA-1
chr8_3 exon 11119942 11120087 11119942 ID=Msa1276440-mRNA-1:exon:4580;Parent=Msa1276440-mRNA-1
chr8_3 five_prime_UTR 11119942 11120087 11119942 ID=Msa1276440-mRNA-1:five_prime_utr;Parent=Msa1276440-mRNA-1
chr8_3 five_prime_UTR 11119451 11119523 11119451 ID=Msa1276440-mRNA-1:five_prime_utr;Parent=Msa1276440-mRNA-1
chr8_3 five_prime_UTR 11119306 11119335 11119306 ID=Msa1276440-mRNA-1:five_prime_utr;Parent=Msa1276440-mRNA-1
chr8_3 CDS 11119269 11119305 11119269 ID=Msa1276440-mRNA-1:cds;Parent=Msa1276440-mRNA-1
chr8_3 CDS 11119115 11119173 11119115 ID=Msa1276440-mRNA-1:cds;Parent=Msa1276440-mRNA-1
chr8_3 CDS 11118618 11118680 11118618 ID=Msa1276440-mRNA-1:cds;Parent=Msa1276440-mRNA-1
chr8_3 CDS 11118273 11118329 11118273 ID=Msa1276440-mRNA-1:cds;Parent=Msa1276440-mRNA-1
Gene Sequence

>Msa1276440

ATGGCTGCTGCTGAATCTCCAACTTCTGTTCGTAAAGTGGTTGTTCATCTTAGAGCCACCGGTGATGCTCCTATTCTCAAACAATCCAAGTTCAAGACTGGTATCTCAAAATTCGAAGTCGAGGCTTTAAGGGAAGAGTTCAACTCTACTCAAATAACAGATCGCGTCAAATGGGTAAATCTTTCTGACCTCCATAATTTTCTATATGCTAGATGA

Protein sequence

>Msa1276440

MAAAESPTSVRKVVVHLRATGDAPILKQSKFKTGISKFEVEALREEFNSTQITDRVKWVNLSDLHNFLYAR*