AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1462930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462930 MtrunA17_Chr5g0393791 92.239 451 26 3 3 445 4 453 0.0 826
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462930 AT2G14680.6 54.709 446 193 4 7 443 2 447 3.33e-150 435
Msa1462930 AT2G14680.2 54.425 452 197 4 7 449 2 453 3.33e-149 439
Msa1462930 AT2G14680.4 54.425 452 197 4 7 449 2 453 8.42e-149 437
Msa1462930 AT2G14680.3 54.709 446 193 4 7 443 2 447 5.73e-148 436
Msa1462930 AT2G14680.1 54.709 446 193 4 7 443 2 447 5.73e-148 436
Msa1462930 AT2G14680.7 54.709 446 193 4 7 443 2 447 1.18e-147 433
Msa1462930 AT2G14680.5 54.709 446 193 4 7 443 2 447 1.18e-147 433
Msa1462930 AT2G14680.8 49.675 308 150 2 141 443 2 309 1.53e-86 273

Find 74 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTATCGTCACATTCTTTC+TGG 0.151805 tig0042812:-4790 Msa1462930:intergenic
CTCTTTCTTCGTCTCTTTGA+TGG 0.170744 tig0042812:-5596 Msa1462930:intergenic
TTCATCAATCACATTGATTA+TGG 0.178551 tig0042812:-5532 Msa1462930:intergenic
TCTCTTTGATGGACCAAATT+TGG 0.204050 tig0042812:-5585 Msa1462930:intergenic
GAAGAAGAGAATCAATTTAA+TGG 0.236342 tig0042812:+5305 Msa1462930:CDS
ACGAATTGGAAATTGGAAAT+TGG 0.246783 tig0042812:-1845 Msa1462930:intergenic
TAATTGAACGAATTGGAAAT+TGG 0.250783 tig0042812:-1852 Msa1462930:intergenic
TGAGAATATTGAGCCAAATT+TGG 0.288586 tig0042812:+5572 Msa1462930:CDS
AATTTCCAATTCGTTCAATT+AGG 0.290953 tig0042812:+1854 Msa1462930:five_prime_UTR
TGTTAAATGTACATGCCTTT+TGG 0.315765 tig0042812:+4820 Msa1462930:CDS
TCATGATGATGAATCATTAT+TGG 0.322762 tig0042812:+1951 Msa1462930:CDS
TATTGTGTTAATCTTTGATA+TGG 0.331925 tig0042812:+1906 Msa1462930:exon
ACTTCAAAAGAACTTGTTAC+AGG 0.339806 tig0042812:+6669 Msa1462930:CDS
GCAAGAAGAAAGACATCTAT+TGG 0.342788 tig0042812:+6606 Msa1462930:CDS
GCAGGAACATCAATTACTTC+TGG 0.343090 tig0042812:+7136 Msa1462930:CDS
AAATCTTACAATGTATTTAG+AGG 0.353616 tig0042812:-4882 Msa1462930:intergenic
CAAAACCTAATTGAACGAAT+TGG 0.372786 tig0042812:-1859 Msa1462930:intergenic
ATTGATTATGGATTTAATAG+TGG 0.381058 tig0042812:-5520 Msa1462930:intergenic
TGGATGACTCTGAGGAGTTA+TGG 0.381091 tig0042812:+4840 Msa1462930:CDS
TTAATAAGTTCTTTCAGATC+AGG 0.393271 tig0042812:+4759 Msa1462930:CDS
GGTGAAAGCTCTAATGGAAT+TGG 0.400555 tig0042812:+7103 Msa1462930:CDS
TCTACAAGACCAACTTTCTC+AGG 0.404211 tig0042812:+2260 Msa1462930:CDS
GTTCTTCAGTCTTTATTTGA+AGG 0.406546 tig0042812:-6648 Msa1462930:intergenic
TGAAAAGGTGAAAGCTCTAA+TGG 0.407201 tig0042812:+7097 Msa1462930:CDS
CGTTACTCCTTACAGAGTAC+TGG 0.434941 tig0042812:+6335 Msa1462930:intron
GGTATCGTCACATTCTTTCT+GGG 0.435822 tig0042812:-4789 Msa1462930:intergenic
ACTGTCTTCAAAGTAAACTT+AGG 0.442891 tig0042812:+5145 Msa1462930:CDS
ATTGGCTCGTATCCGACAAC+TGG 0.446264 tig0042812:+1969 Msa1462930:CDS
AGCTACTGCGTTTGCTGAAA+GGG 0.447316 tig0042812:+2380 Msa1462930:CDS
TTCGATATTCTTTGAATGCT+CGG 0.449192 tig0042812:-2322 Msa1462930:intergenic
AAATACATGGCTTCCTCAAA+AGG 0.453150 tig0042812:+2536 Msa1462930:CDS
AGCAATGGCATTGCATGAAA+AGG 0.456962 tig0042812:+6412 Msa1462930:CDS
GAGTGCATTAGAAGAGCAGC+TGG 0.463535 tig0042812:+5101 Msa1462930:intron
TTATGACTTTACTTCGTGAT+GGG 0.473550 tig0042812:+5493 Msa1462930:CDS
ACTTCAGGTTACTAATGAAA+AGG 0.473839 tig0042812:+7082 Msa1462930:intron
TCAAACCCTTCAAAATAAGT+TGG 0.474280 tig0042812:+2212 Msa1462930:CDS
GAAAGAGAAGAGAATGAATG+TGG 0.474461 tig0042812:+5612 Msa1462930:CDS
TGTACATTTAACATCCCAAC+TGG 0.489928 tig0042812:-4810 Msa1462930:intergenic
ATGTGATTGATGAAAGAGTC+AGG 0.492265 tig0042812:+5541 Msa1462930:CDS
ATTATGACTTTACTTCGTGA+TGG 0.492351 tig0042812:+5492 Msa1462930:CDS
TTCTGTAAGCCTGAGAAAGT+TGG 0.497201 tig0042812:-2269 Msa1462930:intergenic
ACATACCGTGTTCCAGTTGT+CGG 0.502743 tig0042812:-1981 Msa1462930:intergenic
GAGTACTGGTCTTGACTCAT+TGG 0.504942 tig0042812:+6349 Msa1462930:intron
ATGAACAAAGTGATTGAGAA+TGG 0.505576 tig0042812:+5426 Msa1462930:CDS
TTCTTCAGTCTTTATTTGAA+GGG 0.514902 tig0042812:-6647 Msa1462930:intergenic
AAAGAGAAGAGAATGAATGT+GGG 0.518802 tig0042812:+5613 Msa1462930:CDS
TAGCTACTGCGTTTGCTGAA+AGG 0.528244 tig0042812:+2379 Msa1462930:CDS
TGATATGGCTGCTGAGGCCG+AGG 0.534961 tig0042812:+1921 Msa1462930:exon
GTAGAGACACTAAGATAAGC+AGG 0.536606 tig0042812:-2156 Msa1462930:intergenic
ATCATCATGATTCATATCCT+CGG 0.539362 tig0042812:-1938 Msa1462930:intergenic
ACGCAGTAGCTACACAGCCC+TGG 0.545060 tig0042812:-2368 Msa1462930:intergenic
AGAATGTGACGATACCAGTT+GGG 0.552570 tig0042812:+4796 Msa1462930:CDS
CTGTCTTCAAAGTAAACTTA+GGG 0.555011 tig0042812:+5146 Msa1462930:CDS
CTCAGATTGTTGTAAGCAGA+AGG 0.556195 tig0042812:+2698 Msa1462930:CDS
GGAATTGGCACAATTGAAGC+AGG 0.557492 tig0042812:+7118 Msa1462930:CDS
AAGAATGTGACGATACCAGT+TGG 0.572783 tig0042812:+4795 Msa1462930:CDS
ACTCCTCAGAGTCATCCAAA+AGG 0.573589 tig0042812:-4835 Msa1462930:intergenic
TTCATCTGATGCTTTAGCAA+TGG 0.575501 tig0042812:+6397 Msa1462930:CDS
CAGCTATGTATGCAACAAGC+TGG 0.576538 tig0042812:+2132 Msa1462930:CDS
TATGACTTTACTTCGTGATG+GGG 0.578429 tig0042812:+5494 Msa1462930:CDS
TCATTGGCAGTAAAAGCTGA+TGG 0.584093 tig0042812:+6365 Msa1462930:CDS
AAAAGCCAAGGAAAAGGAGG+AGG 0.585798 tig0042812:+2501 Msa1462930:CDS
AAGGGATCATGCAATAATTG+AGG 0.586653 tig0042812:+2398 Msa1462930:CDS
TCTTACAATGTATTTAGAGG+TGG 0.588977 tig0042812:-4879 Msa1462930:intergenic
AATCTTTGATATGGCTGCTG+AGG 0.592047 tig0042812:+1915 Msa1462930:exon
TAGATTAAGAGTTTCTCTTG+TGG 0.593045 tig0042812:-2241 Msa1462930:intergenic
CTTCTGCTTACAACAATCTG+AGG 0.600713 tig0042812:-2697 Msa1462930:intergenic
AAGAGAAGAGAATGAATGTG+GGG 0.621694 tig0042812:+5614 Msa1462930:CDS
GCAGTAAAAGCTGATGGACA+AGG 0.622626 tig0042812:+6371 Msa1462930:CDS
GCGATGTCACAACAAATACA+TGG 0.634762 tig0042812:+2523 Msa1462930:CDS
GGACAAAGTAAACAATTCTG+TGG 0.642709 tig0042812:+5122 Msa1462930:CDS
TCTTCAAAGTAAACTTAGGG+TGG 0.656435 tig0042812:+5149 Msa1462930:CDS
CGTATCCGACAACTGGAACA+CGG 0.656929 tig0042812:+1976 Msa1462930:CDS
TGATTGATGAAAGAGTCAGG+AGG 0.830978 tig0042812:+5544 Msa1462930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAGTATAAAGAAAA+AGG - tig0042812:4708-4727 Msa1462930:intergenic 10.0%
!! TATTATTATTATGAATTTAC+AGG + tig0042812:4733-4752 Msa1462930:intron 10.0%
!! ATTAAAGTGAAAATGAAAAT+AGG - tig0042812:3084-3103 Msa1462930:intergenic 15.0%
!!! ACTTTTTCATTTTTATTCAA+CGG - tig0042812:3533-3552 Msa1462930:intergenic 15.0%
!!! GTTAGTTTTATAATTTGTTT+CGG + tig0042812:3576-3595 Msa1462930:intron 15.0%
!!! TTAGTTTTATAATTTGTTTC+GGG + tig0042812:3577-3596 Msa1462930:intron 15.0%
!!! TTTTTGGTAATGAAAAAATA+CGG - tig0042812:4474-4493 Msa1462930:intergenic 15.0%
!! GATTAAACTATTGAAAAATA+AGG - tig0042812:5234-5253 Msa1462930:intergenic 15.0%
!! ATTGAGAATTGAAAATATTA+TGG + tig0042812:5872-5891 Msa1462930:intron 15.0%
!! TATTGTGTTAATCTTTGATA+TGG + tig0042812:1906-1925 Msa1462930:exon 20.0%
!!! CCTTCTTAAATTTTTCATTT+TGG - tig0042812:2767-2786 Msa1462930:intergenic 20.0%
!! CCAAAATGAAAAATTTAAGA+AGG + tig0042812:2764-2783 Msa1462930:CDS 20.0%
!! AACAAGAAAGGAAATTAAAT+GGG - tig0042812:2806-2825 Msa1462930:intergenic 20.0%
!!! AAAGTATTTGTTACAACTAT+TGG + tig0042812:2923-2942 Msa1462930:intron 20.0%
!!! ATTTTGCGAAAATAACATTT+AGG + tig0042812:3037-3056 Msa1462930:intron 20.0%
!!! TTTTGCGAAAATAACATTTA+GGG + tig0042812:3038-3057 Msa1462930:intron 20.0%
!!! TTCTTTTTAAATAACTAGCA+AGG - tig0042812:3278-3297 Msa1462930:intergenic 20.0%
!!! AATGTTTTTAGAAAGTAAAC+AGG + tig0042812:3323-3342 Msa1462930:intron 20.0%
!! ATTTGAAAAACATTGTCAAT+AGG + tig0042812:3460-3479 Msa1462930:intron 20.0%
!! TTGTGTTTATATAAGACTTT+CGG + tig0042812:3778-3797 Msa1462930:intron 20.0%
!! GAAGTGAAGTAATTAATATT+TGG - tig0042812:4520-4539 Msa1462930:intergenic 20.0%
!!! TGATTTTGCAAACTTTATTT+TGG - tig0042812:4557-4576 Msa1462930:intergenic 20.0%
!!! TGATTTTTGTTCTCATTTTT+TGG + tig0042812:4651-4670 Msa1462930:intron 20.0%
!! AAATCTTACAATGTATTTAG+AGG - tig0042812:4885-4904 Msa1462930:intergenic 20.0%
!! ATTGAAAAATAAGGTTAACA+AGG - tig0042812:5225-5244 Msa1462930:intergenic 20.0%
!!! AACATCATCATTTTAAGTAT+AGG + tig0042812:5463-5482 Msa1462930:CDS 20.0%
!!! ACATCATCATTTTAAGTATA+GGG + tig0042812:5464-5483 Msa1462930:CDS 20.0%
!! ATTGATTATGGATTTAATAG+TGG - tig0042812:5523-5542 Msa1462930:intergenic 20.0%
!! AAAGCAAAAACTAAATACAT+GGG - tig0042812:6471-6490 Msa1462930:intergenic 20.0%
!! AAAAGCAAAAACTAAATACA+TGG - tig0042812:6472-6491 Msa1462930:intergenic 20.0%
!! ATATATTTGCATCTGATTTA+TGG + tig0042812:6517-6536 Msa1462930:intron 20.0%
!! AGATACTATATAGACTATAT+TGG + tig0042812:6796-6815 Msa1462930:intron 20.0%
!!! TTTTGATATTATCCAATACT+CGG + tig0042812:7025-7044 Msa1462930:intron 20.0%
!! AAAATATTATTTCCGAGTAT+TGG - tig0042812:7040-7059 Msa1462930:intergenic 20.0%
! TAATTGAACGAATTGGAAAT+TGG - tig0042812:1855-1874 Msa1462930:intergenic 25.0%
! AATTTCCAATTCGTTCAATT+AGG + tig0042812:1854-1873 Msa1462930:five_prime_UTR 25.0%
!! TCATGATGATGAATCATTAT+TGG + tig0042812:1951-1970 Msa1462930:CDS 25.0%
!! AAGAATGCATTTTCAAAGAT+TGG + tig0042812:2179-2198 Msa1462930:CDS 25.0%
!! TTTTTCATCAACTAACTAAC+AGG + tig0042812:2474-2493 Msa1462930:intron 25.0%
! TATAAAGAAGTGGAAAGATT+GGG - tig0042812:2571-2590 Msa1462930:intergenic 25.0%
! ATATAAAGAAGTGGAAAGAT+TGG - tig0042812:2572-2591 Msa1462930:intergenic 25.0%
! GAACAAGAAAGGAAATTAAA+TGG - tig0042812:2807-2826 Msa1462930:intergenic 25.0%
!! TATTTGTTACAACTATTGGA+AGG + tig0042812:2927-2946 Msa1462930:intron 25.0%
! GAAAATGAAAATAGGAAACA+TGG - tig0042812:3076-3095 Msa1462930:intergenic 25.0%
! TCAGAAAATGAAAACAGATA+GGG - tig0042812:3144-3163 Msa1462930:intergenic 25.0%
! TTCAGAAAATGAAAACAGAT+AGG - tig0042812:3145-3164 Msa1462930:intergenic 25.0%
!! AAACAATGAACAGAATGTTT+TGG - tig0042812:3180-3199 Msa1462930:intergenic 25.0%
!!! TTGTTTTGAACTTGAATGTT+TGG + tig0042812:3353-3372 Msa1462930:intron 25.0%
!!! TGTTTTTCAAATTCAAGGTA+AGG - tig0042812:3452-3471 Msa1462930:intergenic 25.0%
!!! GACAATGTTTTTCAAATTCA+AGG - tig0042812:3457-3476 Msa1462930:intergenic 25.0%
! TTTAGTGTACTTTGGTATTT+AGG + tig0042812:3618-3637 Msa1462930:intron 25.0%
! TTAGTGTACTTTGGTATTTA+GGG + tig0042812:3619-3638 Msa1462930:intron 25.0%
!! TTGGTATTTAGGGATTTTAT+TGG + tig0042812:3629-3648 Msa1462930:intron 25.0%
! GTTCATCAACTAATTATCAA+AGG - tig0042812:3820-3839 Msa1462930:intergenic 25.0%
! AAATTCTATGATACACCTTT+AGG - tig0042812:3894-3913 Msa1462930:intergenic 25.0%
!! AGGTGTATCATAGAATTTTA+AGG + tig0042812:3896-3915 Msa1462930:intron 25.0%
!!! ACATTTTGACTAGAGATATA+TGG - tig0042812:4011-4030 Msa1462930:intergenic 25.0%
! TCTAGTCAAAATGTGAATTT+GGG + tig0042812:4017-4036 Msa1462930:intron 25.0%
! AATTAGTCCTTATAAGGTTT+GGG - tig0042812:4327-4346 Msa1462930:intergenic 25.0%
! AAATTAGTCCTTATAAGGTT+TGG - tig0042812:4328-4347 Msa1462930:intergenic 25.0%
! AAACCTTATAAGGACTAATT+TGG + tig0042812:4327-4346 Msa1462930:intron 25.0%
! AATTTGGTCATATCTCTAAA+TGG + tig0042812:4343-4362 Msa1462930:intron 25.0%
!!! CAGTGCAAAAATAAGTTTTT+TGG - tig0042812:4490-4509 Msa1462930:intergenic 25.0%
!!! TGCTAAAAGTATTTGCATTT+AGG + tig0042812:4620-4639 Msa1462930:intron 25.0%
!!! ATTTTTTGGTAGTGTGTAAT+GGG + tig0042812:4665-4684 Msa1462930:intron 25.0%
! TTAATAAGTTCTTTCAGATC+AGG + tig0042812:4759-4778 Msa1462930:CDS 25.0%
! ATTGTAAGATTTCAGAATCA+TGG + tig0042812:4893-4912 Msa1462930:intron 25.0%
!! TTTTCCATTTTGAATGCTTT+AGG + tig0042812:5260-5279 Msa1462930:intron 25.0%
!! TTTCCATTTTGAATGCTTTA+GGG + tig0042812:5261-5280 Msa1462930:intron 25.0%
! GAAGAAGAGAATCAATTTAA+TGG + tig0042812:5305-5324 Msa1462930:CDS 25.0%
!! TTCATCAATCACATTGATTA+TGG - tig0042812:5535-5554 Msa1462930:intergenic 25.0%
! TTGTGTAAATCTTCAAGATA+AGG - tig0042812:5853-5872 Msa1462930:intergenic 25.0%
!! CTGAAAAAAAAGAGAAGTAT+AGG + tig0042812:5918-5937 Msa1462930:intron 25.0%
!! CAACAAAAATGAGTTTTTCT+CGG + tig0042812:5962-5981 Msa1462930:intron 25.0%
!! AACAAAAATGAGTTTTTCTC+GGG + tig0042812:5963-5982 Msa1462930:intron 25.0%
!! ATTTTTCTGTATCAGATTCA+GGG - tig0042812:6077-6096 Msa1462930:intergenic 25.0%
!! AATTTTTCTGTATCAGATTC+AGG - tig0042812:6078-6097 Msa1462930:intergenic 25.0%
! ATACATTTGAGAAGTTTAAG+AGG + tig0042812:6124-6143 Msa1462930:intron 25.0%
! TTTAGATAAGTTAATCCTGT+TGG + tig0042812:6163-6182 Msa1462930:intron 25.0%
! CAACAAATATCACTGAAATA+AGG - tig0042812:6280-6299 Msa1462930:intergenic 25.0%
! TGAATTTCAAAAATTGCATC+TGG - tig0042812:6304-6323 Msa1462930:intergenic 25.0%
! CATTAAAATAATGTGACTGA+TGG - tig0042812:6446-6465 Msa1462930:intergenic 25.0%
!! TTCTTCAGTCTTTATTTGAA+GGG - tig0042812:6650-6669 Msa1462930:intergenic 25.0%
! ATATCTTTGCTTCAAACAAT+TGG + tig0042812:6704-6723 Msa1462930:intron 25.0%
! AAACAATTGGAACATTTAGA+TGG + tig0042812:6717-6736 Msa1462930:intron 25.0%
!!! GGGTTTTGAGTTTTAGTATT+TGG + tig0042812:1801-1820 Msa1462930:five_prime_UTR 30.0%
ACGAATTGGAAATTGGAAAT+TGG - tig0042812:1848-1867 Msa1462930:intergenic 30.0%
CAAAACCTAATTGAACGAAT+TGG - tig0042812:1862-1881 Msa1462930:intergenic 30.0%
ATCATCATGATTCATATCCT+CGG - tig0042812:1941-1960 Msa1462930:intergenic 30.0%
TCAAACCCTTCAAAATAAGT+TGG + tig0042812:2212-2231 Msa1462930:CDS 30.0%
TAGATTAAGAGTTTCTCTTG+TGG - tig0042812:2244-2263 Msa1462930:intergenic 30.0%
TTCGATATTCTTTGAATGCT+CGG - tig0042812:2325-2344 Msa1462930:intergenic 30.0%
GAAAAATTTAAGCTGCTTCT+CGG - tig0042812:2349-2368 Msa1462930:intergenic 30.0%
! AAGCAGCTTAAATTTTTCCA+GGG + tig0042812:2351-2370 Msa1462930:CDS 30.0%
CTTTCCACTTCTTTATATGA+AGG + tig0042812:2574-2593 Msa1462930:intron 30.0%
TTCCAATTTATCTCTAACAC+AGG + tig0042812:2661-2680 Msa1462930:intron 30.0%
ATCCTGTGTTAGAGATAAAT+TGG - tig0042812:2666-2685 Msa1462930:intergenic 30.0%
ATCTATTCCTAAGAAACTGT+AGG - tig0042812:2844-2863 Msa1462930:intergenic 30.0%
TTGTTATCTAGTGCATTACT+GGG - tig0042812:2905-2924 Msa1462930:intergenic 30.0%
! TTTGTTATCTAGTGCATTAC+TGG - tig0042812:2906-2925 Msa1462930:intergenic 30.0%
TAGGAAACATGGAAACTAAA+GGG - tig0042812:3065-3084 Msa1462930:intergenic 30.0%
ATAGGAAACATGGAAACTAA+AGG - tig0042812:3066-3085 Msa1462930:intergenic 30.0%
TTAAATAACTAGCAAGGAGA+TGG - tig0042812:3272-3291 Msa1462930:intergenic 30.0%
TATAAAACTCCCTGTTGAAA+GGG + tig0042812:3384-3403 Msa1462930:intron 30.0%
ACCAATTGTAGGTCTATTAT+AGG + tig0042812:3423-3442 Msa1462930:intron 30.0%
!!! TTTGTTTCGGGTTTTCAAAT+TGG + tig0042812:3589-3608 Msa1462930:intron 30.0%
!!! TTGTTTCGGGTTTTCAAATT+GGG + tig0042812:3590-3609 Msa1462930:intron 30.0%
!!! GGGATTATTTTAGTGTACTT+TGG + tig0042812:3610-3629 Msa1462930:intron 30.0%
TGTCTAAATAACCACATAGT+CGG + tig0042812:3745-3764 Msa1462930:intron 30.0%
CTTTCGGTATAAACATTTAG+AGG + tig0042812:3794-3813 Msa1462930:intron 30.0%
TATGCCTTTGACTAAAAACT+CGG - tig0042812:3864-3883 Msa1462930:intergenic 30.0%
AACCTTGAAAACTAGTTCAA+GGG + tig0042812:3948-3967 Msa1462930:intron 30.0%
GTTTCATCCTTATAAGACTT+GGG - tig0042812:3984-4003 Msa1462930:intergenic 30.0%
AGTTTCATCCTTATAAGACT+TGG - tig0042812:3985-4004 Msa1462930:intergenic 30.0%
CTCTAGTCAAAATGTGAATT+TGG + tig0042812:4016-4035 Msa1462930:intron 30.0%
AGTCAATAACAGATCTTTGA+TGG + tig0042812:4097-4116 Msa1462930:intron 30.0%
!! TTTGATACCATCTGAGATTT+TGG + tig0042812:4263-4282 Msa1462930:intron 30.0%
ATCCATAAAACCTAGCTTAA+GGG + tig0042812:4291-4310 Msa1462930:intron 30.0%
TGACCAAATTAGTCCTTATA+AGG - tig0042812:4333-4352 Msa1462930:intergenic 30.0%
!!! CATTTTTTGGTAGTGTGTAA+TGG + tig0042812:4664-4683 Msa1462930:intron 30.0%
! TGTTAAATGTACATGCCTTT+TGG + tig0042812:4820-4839 Msa1462930:CDS 30.0%
TCTTACAATGTATTTAGAGG+TGG - tig0042812:4882-4901 Msa1462930:intergenic 30.0%
GTTTCAGTGATAATTACACA+AGG + tig0042812:4922-4941 Msa1462930:intron 30.0%
CAAATTGAGTAACCAGAATA+AGG - tig0042812:4952-4971 Msa1462930:intergenic 30.0%
! CTTATTCTGGTTACTCAATT+TGG + tig0042812:4950-4969 Msa1462930:intron 30.0%
ACTGTCTTCAAAGTAAACTT+AGG + tig0042812:5145-5164 Msa1462930:CDS 30.0%
CTGTCTTCAAAGTAAACTTA+GGG + tig0042812:5146-5165 Msa1462930:CDS 30.0%
! AAACCCTAAAGCATTCAAAA+TGG - tig0042812:5267-5286 Msa1462930:intergenic 30.0%
!!! ATTTTGAATGCTTTAGGGTT+TGG + tig0042812:5266-5285 Msa1462930:intron 30.0%
AAATCTGCAAATAAGTCATC+AGG - tig0042812:5404-5423 Msa1462930:intergenic 30.0%
ATGAACAAAGTGATTGAGAA+TGG + tig0042812:5426-5445 Msa1462930:CDS 30.0%
ATTATGACTTTACTTCGTGA+TGG + tig0042812:5492-5511 Msa1462930:CDS 30.0%
TTATGACTTTACTTCGTGAT+GGG + tig0042812:5493-5512 Msa1462930:CDS 30.0%
TGAGAATATTGAGCCAAATT+TGG + tig0042812:5572-5591 Msa1462930:CDS 30.0%
AAAGAGAAGAGAATGAATGT+GGG + tig0042812:5613-5632 Msa1462930:CDS 30.0%
!! GTGAAACAGTTTTATCTTGA+GGG - tig0042812:5653-5672 Msa1462930:intergenic 30.0%
!! TGTGAAACAGTTTTATCTTG+AGG - tig0042812:5654-5673 Msa1462930:intergenic 30.0%
!! CATGAGATTTTCTTTGAGAA+AGG - tig0042812:5712-5731 Msa1462930:intergenic 30.0%
ATTTCAGTCTAATAACGGTT+AGG - tig0042812:5993-6012 Msa1462930:intergenic 30.0%
GCTCAATTTCAGTCTAATAA+CGG - tig0042812:5998-6017 Msa1462930:intergenic 30.0%
GTATTCTTCATCATCAGATT+GGG - tig0042812:6044-6063 Msa1462930:intergenic 30.0%
TGTATTCTTCATCATCAGAT+TGG - tig0042812:6045-6064 Msa1462930:intergenic 30.0%
! TCTGATGATGAAGAATACAA+TGG + tig0042812:6046-6065 Msa1462930:intron 30.0%
! CTGATGATGAAGAATACAAT+GGG + tig0042812:6047-6066 Msa1462930:intron 30.0%
ATGACATTGCTCTTCTTAAT+AGG + tig0042812:6193-6212 Msa1462930:intron 30.0%
TGCAATTAAATGTCCTAAGT+TGG + tig0042812:6238-6257 Msa1462930:intron 30.0%
!! TAGTTTTTGCTTTTCCTCTT+AGG + tig0042812:6478-6497 Msa1462930:intron 30.0%
! GTTCTTCAGTCTTTATTTGA+AGG - tig0042812:6651-6670 Msa1462930:intergenic 30.0%
!! ACTTCAAAAGAACTTGTTAC+AGG + tig0042812:6669-6688 Msa1462930:CDS 30.0%
GCTGTAAATTTGTAGTATCT+TGG + tig0042812:6835-6854 Msa1462930:intron 30.0%
! ATTTGTAGTATCTTGGTCTT+TGG + tig0042812:6842-6861 Msa1462930:intron 30.0%
!!! GCACATGTGGTTTTAAAATT+TGG - tig0042812:7000-7019 Msa1462930:intergenic 30.0%
! ACTTCAGGTTACTAATGAAA+AGG + tig0042812:7082-7101 Msa1462930:intron 30.0%
!!! AGCAGCCAACTTATTTTGAA+GGG - tig0042812:2220-2239 Msa1462930:intergenic 35.0%
!!! AAGCAGCCAACTTATTTTGA+AGG - tig0042812:2221-2240 Msa1462930:intergenic 35.0%
! GAAGCAGCTTAAATTTTTCC+AGG + tig0042812:2350-2369 Msa1462930:CDS 35.0%
AAGGGATCATGCAATAATTG+AGG + tig0042812:2398-2417 Msa1462930:CDS 35.0%
AAATACATGGCTTCCTCAAA+AGG + tig0042812:2536-2555 Msa1462930:CDS 35.0%
TGGTCCTTCATATAAAGAAG+TGG - tig0042812:2581-2600 Msa1462930:intergenic 35.0%
CATGCAGACAGTATTAAACA+TGG - tig0042812:2601-2620 Msa1462930:intergenic 35.0%
TTTAATACTGTCTGCATGCA+TGG + tig0042812:2603-2622 Msa1462930:intron 35.0%
!! AGCTCTGAATTGAACAAGAA+AGG - tig0042812:2818-2837 Msa1462930:intergenic 35.0%
AGCTTATCCTACAGTTTCTT+AGG + tig0042812:2834-2853 Msa1462930:intron 35.0%
AGGAAACATGGAAACTAAAG+GGG - tig0042812:3064-3083 Msa1462930:intergenic 35.0%
CTATAAAACTCCCTGTTGAA+AGG + tig0042812:3383-3402 Msa1462930:intron 35.0%
ATTGTTGAACCCTTTCAACA+GGG - tig0042812:3396-3415 Msa1462930:intergenic 35.0%
TGTTGAAAGGGTTCAACAAT+GGG + tig0042812:3396-3415 Msa1462930:intron 35.0%
GCCTATAATAGACCTACAAT+TGG - tig0042812:3427-3446 Msa1462930:intergenic 35.0%
AAATAACCACATAGTCGGTT+TGG + tig0042812:3750-3769 Msa1462930:intron 35.0%
CAACCTTGAAAACTAGTTCA+AGG + tig0042812:3947-3966 Msa1462930:intron 35.0%
!!! ATCCCTTGAACTAGTTTTCA+AGG - tig0042812:3953-3972 Msa1462930:intergenic 35.0%
TTGAAAACTAGTTCAAGGGA+TGG + tig0042812:3952-3971 Msa1462930:intron 35.0%
CATGGCAGTTGTCAAAAAAT+CGG + tig0042812:4208-4227 Msa1462930:intron 35.0%
AGTTGTCAAAAAATCGGTCA+TGG + tig0042812:4214-4233 Msa1462930:intron 35.0%
! CATCAAGTGTTGTTATATGG+CGG - tig0042812:4240-4259 Msa1462930:intergenic 35.0%
! TGCCATCAAGTGTTGTTATA+TGG - tig0042812:4243-4262 Msa1462930:intergenic 35.0%
ATGAGTTCCAAAATCTCAGA+TGG - tig0042812:4273-4292 Msa1462930:intergenic 35.0%
CATCCATAAAACCTAGCTTA+AGG + tig0042812:4290-4309 Msa1462930:intron 35.0%
TCCATAAAACCTAGCTTAAG+GGG + tig0042812:4292-4311 Msa1462930:intron 35.0%
AGGATTACCCAAACCTTATA+AGG + tig0042812:4317-4336 Msa1462930:intron 35.0%
GTCATATCTCTAAATGGTGT+AGG + tig0042812:4349-4368 Msa1462930:intron 35.0%
TGTACATTTAACATCCCAAC+TGG - tig0042812:4813-4832 Msa1462930:intergenic 35.0%
!! TGAGAGCATAGCATTTTACT+GGG - tig0042812:4978-4997 Msa1462930:intergenic 35.0%
!! TTGAGAGCATAGCATTTTAC+TGG - tig0042812:4979-4998 Msa1462930:intergenic 35.0%
GATCACTGTTGTATGTACTT+AGG + tig0042812:5012-5031 Msa1462930:intron 35.0%
GGACAAAGTAAACAATTCTG+TGG + tig0042812:5122-5141 Msa1462930:CDS 35.0%
TCTTCAAAGTAAACTTAGGG+TGG + tig0042812:5149-5168 Msa1462930:CDS 35.0%
ATGAGATGAATCAACAACAG+AGG - tig0042812:5197-5216 Msa1462930:intergenic 35.0%
TATGACTTTACTTCGTGATG+GGG + tig0042812:5494-5513 Msa1462930:CDS 35.0%
ATGTGATTGATGAAAGAGTC+AGG + tig0042812:5541-5560 Msa1462930:CDS 35.0%
! TCTCTTTGATGGACCAAATT+TGG - tig0042812:5588-5607 Msa1462930:intergenic 35.0%
GAAAGAGAAGAGAATGAATG+TGG + tig0042812:5612-5631 Msa1462930:CDS 35.0%
AAGAGAAGAGAATGAATGTG+GGG + tig0042812:5614-5633 Msa1462930:CDS 35.0%
TAAAACTGTTTCACAGTCCA+AGG + tig0042812:5659-5678 Msa1462930:intron 35.0%
! TTATAGCGATTGATGGCTTA+TGG + tig0042812:5754-5773 Msa1462930:intron 35.0%
ACTCTAATCTAGACCAACTT+AGG - tig0042812:6254-6273 Msa1462930:intergenic 35.0%
! AAGTTGGTCTAGATTAGAGT+TGG + tig0042812:6254-6273 Msa1462930:intron 35.0%
TTCATCTGATGCTTTAGCAA+TGG + tig0042812:6397-6416 Msa1462930:CDS 35.0%
TGATCAGTGAAAAACCTAAG+AGG - tig0042812:6495-6514 Msa1462930:intergenic 35.0%
GCAAGAAGAAAGACATCTAT+TGG + tig0042812:6606-6625 Msa1462930:CDS 35.0%
ACATTTAGATGGTAGTAGCT+TGG + tig0042812:6728-6747 Msa1462930:intron 35.0%
! AGCATAGCTTCATTTTCTGA+AGG - tig0042812:6914-6933 Msa1462930:intergenic 35.0%
!! TTGCGTTGGATATTTTGAAG+AGG - tig0042812:6943-6962 Msa1462930:intergenic 35.0%
! ATGTAAGTGCCTGTGATTTT+CGG + tig0042812:6964-6983 Msa1462930:intron 35.0%
TATCAAAATCTTCGCACATG+TGG - tig0042812:7013-7032 Msa1462930:intergenic 35.0%
! GAGTTGTTGTGTTTTACTTC+AGG + tig0042812:7067-7086 Msa1462930:intron 35.0%
! TGAAAAGGTGAAAGCTCTAA+TGG + tig0042812:7097-7116 Msa1462930:CDS 35.0%
AATCTTTGATATGGCTGCTG+AGG + tig0042812:1915-1934 Msa1462930:exon 40.0%
GTAGAGACACTAAGATAAGC+AGG - tig0042812:2159-2178 Msa1462930:intergenic 40.0%
! GCATTTTCAAAGATTGGAGC+AGG + tig0042812:2185-2204 Msa1462930:CDS 40.0%
TCTACAAGACCAACTTTCTC+AGG + tig0042812:2260-2279 Msa1462930:CDS 40.0%
TTCTGTAAGCCTGAGAAAGT+TGG - tig0042812:2272-2291 Msa1462930:intergenic 40.0%
TGAAAAAGCCAAGGAAAAGG+AGG + tig0042812:2498-2517 Msa1462930:CDS 40.0%
GCGATGTCACAACAAATACA+TGG + tig0042812:2523-2542 Msa1462930:CDS 40.0%
! TGGGAATACCATACCTTTTG+AGG - tig0042812:2552-2571 Msa1462930:intergenic 40.0%
CTTCTGCTTACAACAATCTG+AGG - tig0042812:2700-2719 Msa1462930:intergenic 40.0%
CTCAGATTGTTGTAAGCAGA+AGG + tig0042812:2698-2717 Msa1462930:CDS 40.0%
CATTGTTGAACCCTTTCAAC+AGG - tig0042812:3397-3416 Msa1462930:intergenic 40.0%
CTGTTGAAAGGGTTCAACAA+TGG + tig0042812:3395-3414 Msa1462930:intron 40.0%
TTGTTGTGTGACTAGGACAT+AGG - tig0042812:3504-3523 Msa1462930:intergenic 40.0%
!! GTTTGAGTTGTTGTGTGACT+AGG - tig0042812:3511-3530 Msa1462930:intergenic 40.0%
ATTGGAGAGCCTTGACATAA+TGG + tig0042812:3647-3666 Msa1462930:intron 40.0%
GAACTCCAACCATTATGTCA+AGG - tig0042812:3659-3678 Msa1462930:intergenic 40.0%
ACAATTGACCTCCAATGACA+TGG - tig0042812:3685-3704 Msa1462930:intergenic 40.0%
!!! GTGTCCGAGTTTTTAGTCAA+AGG + tig0042812:3857-3876 Msa1462930:intron 40.0%
CTATGATACACCTTTAGGTG+TGG - tig0042812:3889-3908 Msa1462930:intergenic 40.0%
! GTGATTGCCCAAGTCTTATA+AGG + tig0042812:3974-3993 Msa1462930:intron 40.0%
ACACTACATATGTCTCGTCT+TGG - tig0042812:4060-4079 Msa1462930:intergenic 40.0%
AAGACGAGACATATGTAGTG+TGG + tig0042812:4059-4078 Msa1462930:intron 40.0%
GCAATGGCATGTTTATATGG+TGG - tig0042812:4156-4175 Msa1462930:intergenic 40.0%
CCAGCAATGGCATGTTTATA+TGG - tig0042812:4159-4178 Msa1462930:intergenic 40.0%
CCATATAAACATGCCATTGC+TGG + tig0042812:4156-4175 Msa1462930:intron 40.0%
ATGCCTTCACAAATTGTCCA+TGG + tig0042812:4190-4209 Msa1462930:intron 40.0%
!!! CGATTTTTTGACAACTGCCA+TGG - tig0042812:4210-4229 Msa1462930:intergenic 40.0%
CGCCATATAACAACACTTGA+TGG + tig0042812:4238-4257 Msa1462930:intron 40.0%
! ACCCCTTAAGCTAGGTTTTA+TGG - tig0042812:4296-4315 Msa1462930:intergenic 40.0%
AAAACCTAGCTTAAGGGGTA+AGG + tig0042812:4297-4316 Msa1462930:intron 40.0%
TAATCCTTACCCCTTAAGCT+AGG - tig0042812:4304-4323 Msa1462930:intergenic 40.0%
GGTATCGTCACATTCTTTCT+GGG - tig0042812:4792-4811 Msa1462930:intergenic 40.0%
TGGTATCGTCACATTCTTTC+TGG - tig0042812:4793-4812 Msa1462930:intergenic 40.0%
AAGAATGTGACGATACCAGT+TGG + tig0042812:4795-4814 Msa1462930:CDS 40.0%
AGAATGTGACGATACCAGTT+GGG + tig0042812:4796-4815 Msa1462930:CDS 40.0%
! ACACAAGGTGTTCCTTATTC+TGG + tig0042812:4937-4956 Msa1462930:intron 40.0%
CAGGATTCAGAGTTTGCAAA+TGG - tig0042812:5385-5404 Msa1462930:intergenic 40.0%
TGATTGATGAAAGAGTCAGG+AGG + tig0042812:5544-5563 Msa1462930:CDS 40.0%
CTCTTTCTTCGTCTCTTTGA+TGG - tig0042812:5599-5618 Msa1462930:intergenic 40.0%
TAGTGAGCAGTTTCAAACCT+TGG - tig0042812:5679-5698 Msa1462930:intergenic 40.0%
! AGAGCACTTATAGCGATTGA+TGG + tig0042812:5747-5766 Msa1462930:intron 40.0%
CAGTCTAATAACGGTTAGGA+TGG - tig0042812:5989-6008 Msa1462930:intergenic 40.0%
AATGTCATTGTCATGCCAAC+AGG - tig0042812:6181-6200 Msa1462930:intergenic 40.0%
CAGTACTCTGTAAGGAGTAA+CGG - tig0042812:6337-6356 Msa1462930:intergenic 40.0%
TCATTGGCAGTAAAAGCTGA+TGG + tig0042812:6365-6384 Msa1462930:CDS 40.0%
AGCAATGGCATTGCATGAAA+AGG + tig0042812:6412-6431 Msa1462930:CDS 40.0%
CCTGAAGCATAAAGCAAGAT+AGG - tig0042812:6561-6580 Msa1462930:intergenic 40.0%
CCTATCTTGCTTTATGCTTC+AGG + tig0042812:6558-6577 Msa1462930:intron 40.0%
! TGCCTGTGATTTTCGGATTA+GGG + tig0042812:6971-6990 Msa1462930:intron 40.0%
! GGTGAAAGCTCTAATGGAAT+TGG + tig0042812:7103-7122 Msa1462930:CDS 40.0%
GCAGGAACATCAATTACTTC+TGG + tig0042812:7136-7155 Msa1462930:CDS 40.0%
ACATACCGTGTTCCAGTTGT+CGG - tig0042812:1984-2003 Msa1462930:intergenic 45.0%
CAGCTATGTATGCAACAAGC+TGG + tig0042812:2132-2151 Msa1462930:CDS 45.0%
! TAGCTACTGCGTTTGCTGAA+AGG + tig0042812:2379-2398 Msa1462930:CDS 45.0%
! AGCTACTGCGTTTGCTGAAA+GGG + tig0042812:2380-2399 Msa1462930:CDS 45.0%
CTAACAGGCTGAAAAAGCCA+AGG + tig0042812:2489-2508 Msa1462930:intron 45.0%
GGCTGAAAAAGCCAAGGAAA+AGG + tig0042812:2495-2514 Msa1462930:intron 45.0%
AAAAGCCAAGGAAAAGGAGG+AGG + tig0042812:2501-2520 Msa1462930:CDS 45.0%
CATGGCTTCCTCAAAAGGTA+TGG + tig0042812:2541-2560 Msa1462930:intron 45.0%
GAAAGGGTTCAACAATGGGT+TGG + tig0042812:3400-3419 Msa1462930:intron 45.0%
!! CAATGGGTTGGACCAATTGT+AGG + tig0042812:3412-3431 Msa1462930:intron 45.0%
GAGAGCCTTGACATAATGGT+TGG + tig0042812:3651-3670 Msa1462930:intron 45.0%
TGGAGTTCATGCCATGTCAT+TGG + tig0042812:3671-3690 Msa1462930:intron 45.0%
AGTTCATGCCATGTCATTGG+AGG + tig0042812:3674-3693 Msa1462930:intron 45.0%
AATCAGCCTCTTGCAAAGCA+AGG + tig0042812:3716-3735 Msa1462930:intron 45.0%
ATGACACCAAACCGACTATG+TGG - tig0042812:3759-3778 Msa1462930:intergenic 45.0%
AAGGCATACTCCACACCTAA+AGG + tig0042812:3876-3895 Msa1462930:intron 45.0%
GATGGCATCAGTGTTGTCAA+TGG + tig0042812:4115-4134 Msa1462930:intron 45.0%
! AAACATGCCATTGCTGGCTA+TGG + tig0042812:4162-4181 Msa1462930:intron 45.0%
CTGCCATGGACAATTTGTGA+AGG - tig0042812:4196-4215 Msa1462930:intergenic 45.0%
AGGATCTCAACAGTGTACTC+TGG + tig0042812:4369-4388 Msa1462930:intron 45.0%
GGATCTCAACAGTGTACTCT+GGG + tig0042812:4370-4389 Msa1462930:intron 45.0%
AGTGTACTCTGGGTTTGTCA+GGG + tig0042812:4380-4399 Msa1462930:intron 45.0%
TGTACAACGACAAGTAACCC+AGG - tig0042812:4428-4447 Msa1462930:intergenic 45.0%
! ATGCCTTTTGGATGACTCTG+AGG + tig0042812:4832-4851 Msa1462930:CDS 45.0%
ACTCCTCAGAGTCATCCAAA+AGG - tig0042812:4838-4857 Msa1462930:intergenic 45.0%
! TGGATGACTCTGAGGAGTTA+TGG + tig0042812:4840-4859 Msa1462930:CDS 45.0%
!! TTGAGCATGCTACTTTGACC+TGG + tig0042812:6012-6031 Msa1462930:intron 45.0%
!! TGAGCATGCTACTTTGACCT+GGG + tig0042812:6013-6032 Msa1462930:intron 45.0%
TCTTCATCATCAGATTGGGC+TGG - tig0042812:6040-6059 Msa1462930:intergenic 45.0%
CGTTACTCCTTACAGAGTAC+TGG + tig0042812:6335-6354 Msa1462930:intron 45.0%
GTCAAGACCAGTACTCTGTA+AGG - tig0042812:6345-6364 Msa1462930:intergenic 45.0%
!! GAGTACTGGTCTTGACTCAT+TGG + tig0042812:6349-6368 Msa1462930:intron 45.0%
! GCAGTAAAAGCTGATGGACA+AGG + tig0042812:6371-6390 Msa1462930:CDS 45.0%
! AGATGGTAGTAGCTTGGTGA+TGG + tig0042812:6734-6753 Msa1462930:intron 45.0%
CAGGCACTTACATATTGCGT+TGG - tig0042812:6957-6976 Msa1462930:intergenic 45.0%
! GTGCCTGTGATTTTCGGATT+AGG + tig0042812:6970-6989 Msa1462930:intron 45.0%
!! GCCTGTGATTTTCGGATTAG+GGG + tig0042812:6972-6991 Msa1462930:intron 45.0%
TCCCCTAATCCGAAAATCAC+AGG - tig0042812:6976-6995 Msa1462930:intergenic 45.0%
GGAATTGGCACAATTGAAGC+AGG + tig0042812:7118-7137 Msa1462930:CDS 45.0%
!! ATTGGCTCGTATCCGACAAC+TGG + tig0042812:1969-1988 Msa1462930:CDS 50.0%
CGTATCCGACAACTGGAACA+CGG + tig0042812:1976-1995 Msa1462930:CDS 50.0%
GCCTCTTGCAAAGCAAGGTA+AGG + tig0042812:3721-3740 Msa1462930:intron 50.0%
GCCTTACCTTGCTTTGCAAG+AGG - tig0042812:3725-3744 Msa1462930:intergenic 50.0%
GGCATCAGTGTTGTCAATGG+CGG + tig0042812:4118-4137 Msa1462930:intron 50.0%
! TCAGTGTTGTCAATGGCGGA+AGG + tig0042812:4122-4141 Msa1462930:intron 50.0%
CAGTGTACTCTGGGTTTGTC+AGG + tig0042812:4379-4398 Msa1462930:intron 50.0%
GTGTACTCTGGGTTTGTCAG+GGG + tig0042812:4381-4400 Msa1462930:intron 50.0%
TCATGCTAAGATGACGCTCC+TGG + tig0042812:4407-4426 Msa1462930:intron 50.0%
CATGCTAAGATGACGCTCCT+GGG + tig0042812:4408-4427 Msa1462930:intron 50.0%
GAGTGCATTAGAAGAGCAGC+TGG + tig0042812:5101-5120 Msa1462930:intron 50.0%
!! GAGCATGCTACTTTGACCTG+GGG + tig0042812:6014-6033 Msa1462930:intron 50.0%
! CATCGCCTCCTCCTTTTCCT+TGG - tig0042812:2509-2528 Msa1462930:intergenic 55.0%
! CATGCCATTGCTGGCTATGG+CGG + tig0042812:4165-4184 Msa1462930:intron 55.0%
! ATGCCATTGCTGGCTATGGC+GGG + tig0042812:4166-4185 Msa1462930:intron 55.0%
ATACCCGCCATAGCCAGCAA+TGG - tig0042812:4172-4191 Msa1462930:intergenic 55.0%
TGATATGGCTGCTGAGGCCG+AGG + tig0042812:1921-1940 Msa1462930:exon 60.0%
ACGCAGTAGCTACACAGCCC+TGG - tig0042812:2371-2390 Msa1462930:intergenic 60.0%
!! CATCAGATTGGGCTGGCCCC+AGG - tig0042812:6033-6052 Msa1462930:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0042812 gene 1800 7181 1800 ID=Msa1462930;Name=Msa1462930
tig0042812 mRNA 1800 7181 1800 ID=Msa1462930-mRNA-1;Parent=Msa1462930;Name=Msa1462930-mRNA-1;_AED=0.14;_eAED=0.14;_QI=125|0.9|0.81|1|0.9|0.81|11|0|452
tig0042812 exon 1800 1997 1800 ID=Msa1462930-mRNA-1:exon:23833;Parent=Msa1462930-mRNA-1
tig0042812 exon 2103 2419 2103 ID=Msa1462930-mRNA-1:exon:23834;Parent=Msa1462930-mRNA-1
tig0042812 exon 2496 2557 2496 ID=Msa1462930-mRNA-1:exon:23835;Parent=Msa1462930-mRNA-1
tig0042812 exon 2683 2785 2683 ID=Msa1462930-mRNA-1:exon:23836;Parent=Msa1462930-mRNA-1
tig0042812 exon 4755 4895 4755 ID=Msa1462930-mRNA-1:exon:23837;Parent=Msa1462930-mRNA-1
tig0042812 exon 5102 5170 5102 ID=Msa1462930-mRNA-1:exon:23838;Parent=Msa1462930-mRNA-1
tig0042812 exon 5282 5338 5282 ID=Msa1462930-mRNA-1:exon:23839;Parent=Msa1462930-mRNA-1
tig0042812 exon 5420 5665 5420 ID=Msa1462930-mRNA-1:exon:23840;Parent=Msa1462930-mRNA-1
tig0042812 exon 6350 6433 6350 ID=Msa1462930-mRNA-1:exon:23841;Parent=Msa1462930-mRNA-1
tig0042812 exon 6580 6690 6580 ID=Msa1462930-mRNA-1:exon:23842;Parent=Msa1462930-mRNA-1
tig0042812 exon 7089 7181 7089 ID=Msa1462930-mRNA-1:exon:23843;Parent=Msa1462930-mRNA-1
tig0042812 five_prime_UTR 1800 1924 1800 ID=Msa1462930-mRNA-1:five_prime_utr;Parent=Msa1462930-mRNA-1
tig0042812 CDS 1925 1997 1925 ID=Msa1462930-mRNA-1:cds;Parent=Msa1462930-mRNA-1
tig0042812 CDS 2103 2419 2103 ID=Msa1462930-mRNA-1:cds;Parent=Msa1462930-mRNA-1
tig0042812 CDS 2496 2557 2496 ID=Msa1462930-mRNA-1:cds;Parent=Msa1462930-mRNA-1
tig0042812 CDS 2683 2785 2683 ID=Msa1462930-mRNA-1:cds;Parent=Msa1462930-mRNA-1
tig0042812 CDS 4755 4895 4755 ID=Msa1462930-mRNA-1:cds;Parent=Msa1462930-mRNA-1
tig0042812 CDS 5102 5170 5102 ID=Msa1462930-mRNA-1:cds;Parent=Msa1462930-mRNA-1
tig0042812 CDS 5282 5338 5282 ID=Msa1462930-mRNA-1:cds;Parent=Msa1462930-mRNA-1
tig0042812 CDS 5420 5665 5420 ID=Msa1462930-mRNA-1:cds;Parent=Msa1462930-mRNA-1
tig0042812 CDS 6350 6433 6350 ID=Msa1462930-mRNA-1:cds;Parent=Msa1462930-mRNA-1
tig0042812 CDS 6580 6690 6580 ID=Msa1462930-mRNA-1:cds;Parent=Msa1462930-mRNA-1
tig0042812 CDS 7089 7181 7089 ID=Msa1462930-mRNA-1:cds;Parent=Msa1462930-mRNA-1
Gene Sequence

>Msa1462930

ATGGCTGCTGAGGCCGAGGATATGAATCATGATGATGAATCATTATTGGCTCGTATCCGACAACTGGAACACGAGCGTGATGAATTACGCAAAGATATCGAACAGCTATGTATGCAACAAGCTGGACCTGCTTATCTTAGTGTCTCTACAAGAATGCATTTTCAAAGATTGGAGCAGGAGATTCAAACCCTTCAAAATAAGTTGGCTGCTTCCACAAGAGAAACTCTTAATCTACAAGACCAACTTTCTCAGGCTTACAGAATTAAAGCTCAACTCGCAGATCTACACGCTGCCGAGCATTCAAAGAATATCGAAGCCGAGAAGCAGCTTAAATTTTTCCAGGGCTGTGTAGCTACTGCGTTTGCTGAAAGGGATCATGCAATAATTGAGGCTGAAAAAGCCAAGGAAAAGGAGGAGGCGATGTCACAACAAATACATGGCTTCCTCAAAAGGATACAAGAACTCACCTCAGATTGTTGTAAGCAGAAGGAATTTATTGATGCTCTTCAGAGTGATCAAGCAATGTATATAGACCAAAATGAAAAATTTAAGAAGGTAATTAATAAGTTCTTTCAGATCAGGCAATATTCCCAGAAAGAATGTGACGATACCAGTTGGGATGTTAAATGTACATGCCTTTTGGATGACTCTGAGGAGTTATGGAGTTTCAATGATGCTTCCACCTCTAAATACATTAGTGCATTAGAAGAGCAGCTGGACAAAGTAAACAATTCTGTGGACTGTCTTCAAAGTAAACTTAGGGTGGGTTTGGAAATTGAAAATCATCTGAAGAAGAGAATCAATTTAATGGAACAAAAACAAATTTATATGAACAAAGTGATTGAGAATGGCATAGCAGACTTAAAACATCATCATTTTAAGTATAGGGATCATATTATGACTTTACTTCGTGATGGGGAATCCACTATTAAATCCATAATCAATGTGATTGATGAAAGAGTCAGGAGGTGCAATGAGAATATTGAGCCAAATTTGGTCCATCAAAGAGACGAAGAAAGAGAAGAGAATGAATGTGGGGATGCGCACATAAGCCCTCAAGATAAAACTAGTACTGGTCTTGACTCATTGGCAGTAAAAGCTGATGGACAAGGTGATTCATCTGATGCTTTAGCAATGGCATTGCATGAAAAGGTTGATGCTTTATTGCTGTTATCACAGCAAGAAGAAAGACATCTATTGGAGAGAAATGTGAATTCAGCCCTTCAAATAAAGACTGAAGAACTTCAAAAGAACTTGTTACAGGTTACTAATGAAAAGGTGAAAGCTCTAATGGAATTGGCACAATTGAAGCAGGAACATCAATTACTTCTGGAGTATGATTACTTTTCTCAAGAT

Protein sequence

>Msa1462930

MAAEAEDMNHDDESLLARIRQLEHERDELRKDIEQLCMQQAGPAYLSVSTRMHFQRLEQEIQTLQNKLAASTRETLNLQDQLSQAYRIKAQLADLHAAEHSKNIEAEKQLKFFQGCVATAFAERDHAIIEAEKAKEKEEAMSQQIHGFLKRIQELTSDCCKQKEFIDALQSDQAMYIDQNEKFKKVINKFFQIRQYSQKECDDTSWDVKCTCLLDDSEELWSFNDASTSKYISALEEQLDKVNNSVDCLQSKLRVGLEIENHLKKRINLMEQKQIYMNKVIENGIADLKHHHFKYRDHIMTLLRDGESTIKSIINVIDERVRRCNENIEPNLVHQRDEEREENECGDAHISPQDKTSTGLDSLAVKADGQGDSSDALAMALHEKVDALLLLSQQEERHLLERNVNSALQIKTEELQKNLLQVTNEKVKALMELAQLKQEHQLLLEYDYFSQD