Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462710 | XP_003602904.2 | 97.471 | 435 | 8 | 1 | 1 | 432 | 1 | 435 | 0.0 | 868 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462710 | sp|Q9LEU8|ARLY_ARATH | 76.410 | 390 | 92 | 0 | 43 | 432 | 44 | 433 | 0.0 | 643 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462710 | G7J530 | 97.471 | 435 | 8 | 1 | 1 | 432 | 1 | 435 | 0.0 | 868 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090400 | Msa1462710 | 0.826656 | 2.406876e-54 | -8.615850e-47 |
| Msa1369550 | Msa1462710 | 0.834691 | 2.588693e-56 | -8.615850e-47 |
| Msa0602880 | Msa1462710 | 0.820071 | 8.322646e-53 | -8.615850e-47 |
| Msa0788420 | Msa1462710 | 0.800965 | 1.124881e-48 | -8.615850e-47 |
| Msa0137880 | Msa1462710 | 0.850835 | 1.313225e-60 | -8.615850e-47 |
| Msa1302830 | Msa1462710 | 0.800696 | 1.276835e-48 | -8.615850e-47 |
| Msa1321340 | Msa1462710 | 0.823742 | 1.176128e-53 | -8.615850e-47 |
| Msa0379770 | Msa1462710 | 0.924381 | 7.602472e-90 | -8.615850e-47 |
| Msa0444070 | Msa1462710 | 0.803361 | 3.616443e-49 | -8.615850e-47 |
| Msa0267110 | Msa1462710 | 0.821488 | 3.930894e-53 | -8.615850e-47 |
| Msa0283800 | Msa1462710 | 0.818162 | 2.263332e-52 | -8.615850e-47 |
| Msa0321920 | Msa1462710 | 0.808962 | 2.393433e-50 | -8.615850e-47 |
| Msa0344810 | Msa1462710 | 0.803150 | 3.999012e-49 | -8.615850e-47 |
| Msa0349710 | Msa1462710 | 0.813214 | 2.867034e-51 | -8.615850e-47 |
| Msa0547900 | Msa1462710 | 0.823325 | 1.472221e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462710 | MtrunA17_Chr3g0132881 | 97.248 | 436 | 8 | 2 | 1 | 432 | 1 | 436 | 0.0 | 864 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462710 | AT5G10920.1 | 76.410 | 390 | 92 | 0 | 43 | 432 | 44 | 433 | 0.0 | 643 |
Find 125 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGTGTTAGAACTATTT+TGG | 0.122795 | tig0042522:+4118 | Msa1462710:CDS |
| TCGAGAGTGGTGAGTTTAAT+TGG | 0.187249 | tig0042522:+2726 | Msa1462710:CDS |
| ACCCCAAAGTTTAGCTTCTT+TGG | 0.192503 | tig0042522:-2439 | Msa1462710:intergenic |
| CGCTGAGAACGCACTTATTT+CGG | 0.220303 | tig0042522:+2232 | Msa1462710:five_prime_UTR |
| AGCAGCATTGTTGGTGGTTT+GGG | 0.225995 | tig0042522:-2412 | Msa1462710:intergenic |
| CTGTGGGCTTCAGAGGAATT+TGG | 0.246553 | tig0042522:+3763 | Msa1462710:CDS |
| CGGTACTGGGTTACATTAAC+AGG | 0.253211 | tig0042522:-4380 | Msa1462710:intergenic |
| TAGCAGCATTGTTGGTGGTT+TGG | 0.303920 | tig0042522:-2413 | Msa1462710:intergenic |
| GCTTGTGCGTTGGCTGGTAC+AGG | 0.319298 | tig0042522:+3449 | Msa1462710:CDS |
| CCCCAAAGTTTAGCTTCTTT+GGG | 0.325278 | tig0042522:-2438 | Msa1462710:intergenic |
| GTTTGATCAGTGCGAGTGAT+AGG | 0.329792 | tig0042522:+2663 | Msa1462710:CDS |
| GGATTCTATTATTGAAGGTT+TGG | 0.334686 | tig0042522:+2685 | Msa1462710:CDS |
| GGTAAGTCTGCCAGAGTCAT+AGG | 0.335284 | tig0042522:+3871 | Msa1462710:CDS |
| AACTTGATCATTTCTACTTC+TGG | 0.342542 | tig0042522:-2834 | Msa1462710:intergenic |
| TTTGGGTTTAGCAGCATTGT+TGG | 0.350008 | tig0042522:-2421 | Msa1462710:intergenic |
| TTTACAAGGGCAGCCGGTAC+TGG | 0.351034 | tig0042522:-4394 | Msa1462710:intergenic |
| TGGTGGTTTGGGCTTGCATT+CGG | 0.369857 | tig0042522:-2401 | Msa1462710:intergenic |
| GGTGGTTTGGGCTTGCATTC+GGG | 0.373779 | tig0042522:-2400 | Msa1462710:intergenic |
| TTGATTTAGCCTTCAGTTTG+AGG | 0.385239 | tig0042522:+4273 | Msa1462710:CDS |
| TGCATCCATGCTCGCTAAAC+AGG | 0.390409 | tig0042522:+2566 | Msa1462710:CDS |
| ACCCAAAGAAGCTAAACTTT+GGG | 0.395380 | tig0042522:+2437 | Msa1462710:CDS |
| CAATGAACATTACTTTCAAT+CGG | 0.395660 | tig0042522:+4168 | Msa1462710:CDS |
| TGCTTACAATCGTGATTTGC+AGG | 0.397013 | tig0042522:+3936 | Msa1462710:CDS |
| GATTCTATTATTGAAGGTTT+GGG | 0.400207 | tig0042522:+2686 | Msa1462710:CDS |
| CTGTTGAAACAGAATCGCTT+GGG | 0.414810 | tig0042522:-3795 | Msa1462710:intergenic |
| CATTAACAGGGATTTGAGAT+TGG | 0.416653 | tig0042522:-4367 | Msa1462710:intergenic |
| AAGAATACAAAAGGCTTTAC+CGG | 0.418379 | tig0042522:+4193 | Msa1462710:CDS |
| CGCTGATTATCTTGTTAAGA+AGG | 0.421388 | tig0042522:+4241 | Msa1462710:CDS |
| CCCTGAAAATTGTTCATCCA+TGG | 0.422864 | tig0042522:+2260 | Msa1462710:exon |
| AGTGGAGGATCGAGTTGTTA+AGG | 0.423526 | tig0042522:-2352 | Msa1462710:intergenic |
| AATCACGGTCTTATTGTTCC+TGG | 0.423631 | tig0042522:+2953 | Msa1462710:CDS |
| TTAGGGGCTTGTGCGTTGGC+TGG | 0.427204 | tig0042522:+3443 | Msa1462710:CDS |
| AGAAGGTGCTGTAATAAAAC+AGG | 0.428088 | tig0042522:-3001 | Msa1462710:intergenic |
| TCCCTTTCCCGTTTAAAAGA+AGG | 0.430003 | tig0042522:+2198 | Msa1462710:five_prime_UTR |
| CGTGGCTGTTTCTAAAGGGT+TGG | 0.431717 | tig0042522:+2131 | Msa1462710:five_prime_UTR |
| TTACTGCTCCAATGAGGAAT+AGG | 0.432342 | tig0042522:+3513 | Msa1462710:CDS |
| AACCCAAAGAAGCTAAACTT+TGG | 0.437199 | tig0042522:+2436 | Msa1462710:CDS |
| GGTCTCGTGGCTGTTTCTAA+AGG | 0.438527 | tig0042522:+2126 | None:intergenic |
| TGGTGGAAAGGGAGTGGGTA+CGG | 0.440215 | tig0042522:-2329 | Msa1462710:intergenic |
| TTCTCGACTTGGTGAAGAAT+GGG | 0.446818 | tig0042522:+3738 | Msa1462710:CDS |
| GAGTGGGTACGGAGTGGAGA+GGG | 0.447228 | tig0042522:-2318 | Msa1462710:intergenic |
| TTTCTCGACTTGGTGAAGAA+TGG | 0.448284 | tig0042522:+3737 | Msa1462710:CDS |
| TCAACTTTCATTGCTTAAGC+TGG | 0.453847 | tig0042522:+2922 | Msa1462710:CDS |
| AATGAACATTACTTTCAATC+GGG | 0.455024 | tig0042522:+4169 | Msa1462710:CDS |
| ATTCATGACATCGGATGCAT+TGG | 0.456659 | tig0042522:+3487 | Msa1462710:CDS |
| TTGCAGATTGAGCGTGATGC+TGG | 0.458156 | tig0042522:+3380 | Msa1462710:intron |
| TTATACAAACATGACATTAG+AGG | 0.459314 | tig0042522:+2531 | Msa1462710:CDS |
| CCAAGCGATTCTGTTTCAAC+AGG | 0.459444 | tig0042522:+3796 | Msa1462710:CDS |
| CGATGTCATGAATCGATCAA+TGG | 0.461237 | tig0042522:-3477 | Msa1462710:intergenic |
| GATTGGTTCATATCTGAACT+TGG | 0.465386 | tig0042522:-4350 | Msa1462710:intergenic |
| GTAAGATACCTATTCCTCAT+TGG | 0.466006 | tig0042522:-3521 | Msa1462710:intergenic |
| CCTGTTGAAACAGAATCGCT+TGG | 0.466168 | tig0042522:-3796 | Msa1462710:intergenic |
| CTTGTGCGTTGGCTGGTACA+GGG | 0.468110 | tig0042522:+3450 | Msa1462710:CDS |
| GTCTCGTGGCTGTTTCTAAA+GGG | 0.468730 | tig0042522:+2127 | None:intergenic |
| AGTTGTTAAGGTGGTGGAAA+GGG | 0.469339 | tig0042522:-2340 | Msa1462710:intergenic |
| CGAACAAGTTCCATTGGATC+AGG | 0.470603 | tig0042522:-3847 | Msa1462710:intergenic |
| GCTGCTCTTACTGATTTGAT+TGG | 0.475293 | tig0042522:+2785 | Msa1462710:CDS |
| CCTAACCTGTTTAGCGAGCA+TGG | 0.475927 | tig0042522:-2571 | Msa1462710:intergenic |
| CAATCGGGAAAGAATACAAA+AGG | 0.481128 | tig0042522:+4184 | Msa1462710:CDS |
| TCCTTTAGGGGCTTGTGCGT+TGG | 0.482828 | tig0042522:+3439 | Msa1462710:CDS |
| GAAGTATGTAACTTCTTAGC+AGG | 0.486485 | tig0042522:-2812 | Msa1462710:intergenic |
| GATAGGGATTCTATTATTGA+AGG | 0.491597 | tig0042522:+2680 | Msa1462710:CDS |
| TAAACGGGAAAGGGATTCCC+TGG | 0.491674 | tig0042522:-2190 | Msa1462710:intergenic |
| TTCTGACCGAGATTTCCTAC+TGG | 0.492656 | tig0042522:+3678 | Msa1462710:CDS |
| ATCTGAACTTGGACAGTGGC+GGG | 0.493364 | tig0042522:-4339 | Msa1462710:intergenic |
| TTCATGACATCGGATGCATT+GGG | 0.494059 | tig0042522:+3488 | Msa1462710:CDS |
| TAATTGGAGAGCTGATAGAG+AGG | 0.498860 | tig0042522:+2742 | Msa1462710:CDS |
| ATACAAAAGGCTTTACCGGC+TGG | 0.499237 | tig0042522:+4197 | Msa1462710:CDS |
| TTCGGGTTATGATGAATTTG+CGG | 0.501030 | tig0042522:-2383 | Msa1462710:intergenic |
| TTAAGGTGGTGGAAAGGGAG+TGG | 0.505785 | tig0042522:-2335 | Msa1462710:intergenic |
| GGGTTTAGCAGCATTGTTGG+TGG | 0.506523 | tig0042522:-2418 | Msa1462710:intergenic |
| GAATTTGCGGTTAGTGAAAG+TGG | 0.510133 | tig0042522:-2370 | Msa1462710:intergenic |
| GGATCGAGTTGTTAAGGTGG+TGG | 0.511715 | tig0042522:-2346 | Msa1462710:intergenic |
| TCTGCTTGCTTATGTTGAAG+AGG | 0.512207 | tig0042522:+3021 | Msa1462710:CDS |
| GATGTCATGAATCGATCAAT+GGG | 0.518952 | tig0042522:-3476 | Msa1462710:intergenic |
| ATGGGTACTGTGGGCTTCAG+AGG | 0.519124 | tig0042522:+3756 | Msa1462710:CDS |
| GTAAGTCTGCCAGAGTCATA+GGG | 0.524586 | tig0042522:+3872 | Msa1462710:CDS |
| GTTTGATTGATTGTAGAGCT+AGG | 0.529508 | tig0042522:+3405 | Msa1462710:CDS |
| GCAGTGCACCTTTCTCGACT+TGG | 0.530755 | tig0042522:+3727 | Msa1462710:CDS |
| TTGTTACTGATTTACGACTT+TGG | 0.532012 | tig0042522:+2855 | Msa1462710:CDS |
| TTTGATCAGTGCGAGTGATA+GGG | 0.532025 | tig0042522:+2664 | Msa1462710:CDS |
| TAAGGTGGTGGAAAGGGAGT+GGG | 0.532635 | tig0042522:-2334 | Msa1462710:intergenic |
| AGTGAATCGTTCAACGGCGT+CGG | 0.532926 | tig0042522:-2484 | Msa1462710:intergenic |
| TATGATATGAAGTGAAAGCA+TGG | 0.541533 | tig0042522:+4303 | Msa1462710:three_prime_UTR |
| TTACAAGGGCAGCCGGTACT+GGG | 0.543679 | tig0042522:-4393 | Msa1462710:intergenic |
| TTACCACGAACAAGTTCCAT+TGG | 0.545026 | tig0042522:-3853 | Msa1462710:intergenic |
| ATTCTTCACCAAGTCGAGAA+AGG | 0.545808 | tig0042522:-3735 | Msa1462710:intergenic |
| GAGTTGTTAAGGTGGTGGAA+AGG | 0.558676 | tig0042522:-2341 | Msa1462710:intergenic |
| GAAACTCCAGTAGGAAATCT+CGG | 0.563571 | tig0042522:-3684 | Msa1462710:intergenic |
| ATTGAAAAGAGAATCGAGAG+TGG | 0.563997 | tig0042522:+2713 | Msa1462710:CDS |
| GAAAGGGAGTGGGTACGGAG+TGG | 0.566617 | tig0042522:-2324 | Msa1462710:intergenic |
| TGGGGTGGTAGATTCGAAGA+AGG | 0.568029 | tig0042522:+2456 | Msa1462710:CDS |
| GCCAACGCACAAGCCCCTAA+AGG | 0.569555 | tig0042522:-3440 | Msa1462710:intergenic |
| CTGTTAATGTAACCCAGTAC+CGG | 0.570096 | tig0042522:+4381 | Msa1462710:three_prime_UTR |
| CGCTGCAAATGAGTATAACC+AGG | 0.570144 | tig0042522:-2971 | Msa1462710:intergenic |
| GAGAGCTGAAGAGAAAACCA+TGG | 0.571386 | tig0042522:-2277 | Msa1462710:intergenic |
| AGAAAGGTGCACTGCTGTGA+TGG | 0.574379 | tig0042522:-3719 | Msa1462710:intergenic |
| ATACAACAAAAGTGAACACC+AGG | 0.577931 | tig0042522:+2172 | Msa1462710:five_prime_UTR |
| GATCCAATGGAACTTGTTCG+TGG | 0.578604 | tig0042522:+3850 | Msa1462710:CDS |
| TGGTGAAGAATGGGTACTGT+GGG | 0.591067 | tig0042522:+3747 | Msa1462710:CDS |
| TAACTGTTTATCATAAGAGA+CGG | 0.595595 | tig0042522:-2511 | Msa1462710:intergenic |
| AAGCTGGCTTTGAACAATCA+CGG | 0.602310 | tig0042522:+2938 | Msa1462710:CDS |
| GGAGTGGGTACGGAGTGGAG+AGG | 0.607767 | tig0042522:-2319 | Msa1462710:intergenic |
| CCCAAAGAAGCTAAACTTTG+GGG | 0.616189 | tig0042522:+2438 | Msa1462710:CDS |
| CATTGATCGATTCATGACAT+CGG | 0.617561 | tig0042522:+3478 | Msa1462710:CDS |
| TATCTGAACTTGGACAGTGG+CGG | 0.621687 | tig0042522:-4340 | Msa1462710:intergenic |
| CTTCAACATAAGCAAGCAGA+AGG | 0.625456 | tig0042522:-3018 | Msa1462710:intergenic |
| GGAGGATCGAGTTGTTAAGG+TGG | 0.625570 | tig0042522:-2349 | Msa1462710:intergenic |
| ACTCTTCTCACATTGTGCAA+AGG | 0.630735 | tig0042522:+3904 | Msa1462710:CDS |
| CATATTGAATAGTATCGATG+CGG | 0.633815 | tig0042522:+3654 | Msa1462710:intron |
| GTTCTAACACTGTCAAACAC+TGG | 0.634639 | tig0042522:-4110 | Msa1462710:intergenic |
| TGGGATTTACTGCTCCAATG+AGG | 0.636183 | tig0042522:+3507 | Msa1462710:CDS |
| TCATATCTGAACTTGGACAG+TGG | 0.639506 | tig0042522:-4343 | Msa1462710:intergenic |
| TGTTGAAACAGAATCGCTTG+GGG | 0.644193 | tig0042522:-3794 | Msa1462710:intergenic |
| TTGGTGAAGAATGGGTACTG+TGG | 0.649560 | tig0042522:+3746 | Msa1462710:CDS |
| GGATTCAGTGAATCGTTCAA+CGG | 0.655801 | tig0042522:-2490 | Msa1462710:intergenic |
| TAACAGAGAGAAACTCCAGT+AGG | 0.660772 | tig0042522:-3693 | Msa1462710:intergenic |
| GGTACTGGGTTACATTAACA+GGG | 0.663527 | tig0042522:-4379 | Msa1462710:intergenic |
| TAAGTCTGCCAGAGTCATAG+GGG | 0.665309 | tig0042522:+3873 | Msa1462710:CDS |
| GTTGCATCAAGATAACCAGC+CGG | 0.668367 | tig0042522:-4212 | Msa1462710:intergenic |
| AAAGAAGCTAAACTTTGGGG+TGG | 0.671244 | tig0042522:+2441 | Msa1462710:CDS |
| AAATCACGATTGTAAGCATG+TGG | 0.678548 | tig0042522:-3931 | Msa1462710:intergenic |
| TTTGCGGTTAGTGAAAGTGG+AGG | 0.683832 | tig0042522:-2367 | Msa1462710:intergenic |
| AAGTCTGCCAGAGTCATAGG+GGG | 0.718882 | tig0042522:+3874 | Msa1462710:CDS |
| TACAACAAAAGTGAACACCA+GGG | 0.761457 | tig0042522:+2173 | Msa1462710:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAATTTGTGTTTTTTTTT+AGG | + | tig0042522:2640-2659 | Msa1462710:intron | 15.0% |
| !!! | TGAATTTGTGTTTTTTTTTA+GGG | + | tig0042522:2641-2660 | Msa1462710:intron | 15.0% |
| !!! | TATTTGAGATTCATTAAAAA+TGG | + | tig0042522:4055-4074 | Msa1462710:intron | 15.0% |
| !!! | TTGAATTTGTGTTTTTTTTT+AGG | + | tig0042522:2640-2659 | Msa1462710:intron | 15.0% |
| !!! | TGAATTTGTGTTTTTTTTTA+GGG | + | tig0042522:2641-2660 | Msa1462710:intron | 15.0% |
| !!! | TATTTGAGATTCATTAAAAA+TGG | + | tig0042522:4055-4074 | Msa1462710:intron | 15.0% |
| !! | CAAAGTTTGAATTATGTTAA+TGG | + | tig0042522:3076-3095 | Msa1462710:intron | 20.0% |
| !! | ATTATGTTAATGGAAAAGTA+TGG | + | tig0042522:3086-3105 | Msa1462710:intron | 20.0% |
| !!! | AAAATGAGCTATTCAATTTT+CGG | + | tig0042522:3122-3141 | Msa1462710:intron | 20.0% |
| !! | ATATGAATAACAAATCTATG+AGG | - | tig0042522:3185-3204 | Msa1462710:intergenic | 20.0% |
| !! | CAAAGTTTGAATTATGTTAA+TGG | + | tig0042522:3076-3095 | Msa1462710:intron | 20.0% |
| !! | ATTATGTTAATGGAAAAGTA+TGG | + | tig0042522:3086-3105 | Msa1462710:intron | 20.0% |
| !!! | AAAATGAGCTATTCAATTTT+CGG | + | tig0042522:3122-3141 | Msa1462710:intron | 20.0% |
| !! | ATATGAATAACAAATCTATG+AGG | - | tig0042522:3185-3204 | Msa1462710:intergenic | 20.0% |
| ! | TAACTGTTTATCATAAGAGA+CGG | - | tig0042522:2514-2533 | Msa1462710:intergenic | 25.0% |
| ! | TTATACAAACATGACATTAG+AGG | + | tig0042522:2531-2550 | Msa1462710:CDS | 25.0% |
| ! | GATTCTATTATTGAAGGTTT+GGG | + | tig0042522:2686-2705 | Msa1462710:CDS | 25.0% |
| !! | TTAATGGAAAAGTATGGATT+TGG | + | tig0042522:3092-3111 | Msa1462710:intron | 25.0% |
| ! | AGTACACAATTAACTCTATT+AGG | - | tig0042522:3256-3275 | Msa1462710:intergenic | 25.0% |
| !!! | TAACATCATCGTTATTTTAC+CGG | + | tig0042522:3293-3312 | Msa1462710:intron | 25.0% |
| !!! | ATAGGTATCTTACTTTTTAC+TGG | + | tig0042522:3531-3550 | Msa1462710:intron | 25.0% |
| !!! | TCATTAAAAATGGTTGCTTT+TGG | + | tig0042522:4065-4084 | Msa1462710:intron | 25.0% |
| ! | CAATGAACATTACTTTCAAT+CGG | + | tig0042522:4168-4187 | Msa1462710:CDS | 25.0% |
| ! | AATGAACATTACTTTCAATC+GGG | + | tig0042522:4169-4188 | Msa1462710:CDS | 25.0% |
| !! | TAATTTTTACCTCAAACTGA+AGG | - | tig0042522:4285-4304 | Msa1462710:intergenic | 25.0% |
| ! | TAACTGTTTATCATAAGAGA+CGG | - | tig0042522:2514-2533 | Msa1462710:intergenic | 25.0% |
| ! | TTATACAAACATGACATTAG+AGG | + | tig0042522:2531-2550 | Msa1462710:CDS | 25.0% |
| ! | GATTCTATTATTGAAGGTTT+GGG | + | tig0042522:2686-2705 | Msa1462710:CDS | 25.0% |
| !! | TTAATGGAAAAGTATGGATT+TGG | + | tig0042522:3092-3111 | Msa1462710:intron | 25.0% |
| ! | AGTACACAATTAACTCTATT+AGG | - | tig0042522:3256-3275 | Msa1462710:intergenic | 25.0% |
| !!! | TAACATCATCGTTATTTTAC+CGG | + | tig0042522:3293-3312 | Msa1462710:intron | 25.0% |
| !!! | ATAGGTATCTTACTTTTTAC+TGG | + | tig0042522:3531-3550 | Msa1462710:intron | 25.0% |
| !!! | TCATTAAAAATGGTTGCTTT+TGG | + | tig0042522:4065-4084 | Msa1462710:intron | 25.0% |
| ! | CAATGAACATTACTTTCAAT+CGG | + | tig0042522:4168-4187 | Msa1462710:CDS | 25.0% |
| ! | AATGAACATTACTTTCAATC+GGG | + | tig0042522:4169-4188 | Msa1462710:CDS | 25.0% |
| !! | TAATTTTTACCTCAAACTGA+AGG | - | tig0042522:4285-4304 | Msa1462710:intergenic | 25.0% |
| !! | TTTTGTTGTATATGTGTCGT+TGG | - | tig0042522:2163-2182 | Msa1462710:intergenic | 30.0% |
| GATAGGGATTCTATTATTGA+AGG | + | tig0042522:2680-2699 | Msa1462710:CDS | 30.0% | |
| GGATTCTATTATTGAAGGTT+TGG | + | tig0042522:2685-2704 | Msa1462710:CDS | 30.0% | |
| AACTTGATCATTTCTACTTC+TGG | - | tig0042522:2837-2856 | Msa1462710:intergenic | 30.0% | |
| !! | TTGTTACTGATTTACGACTT+TGG | + | tig0042522:2855-2874 | Msa1462710:CDS | 30.0% |
| GAGTTAATTGTGTACTTTAG+AGG | + | tig0042522:3260-3279 | Msa1462710:intron | 30.0% | |
| GGTAAAATAACGATGATGTT+AGG | - | tig0042522:3294-3313 | Msa1462710:intergenic | 30.0% | |
| ! | AGGATGAATTTTTGTCCTTT+AGG | + | tig0042522:3425-3444 | Msa1462710:CDS | 30.0% |
| ! | GGATGAATTTTTGTCCTTTA+GGG | + | tig0042522:3426-3445 | Msa1462710:CDS | 30.0% |
| ! | GATGAATTTTTGTCCTTTAG+GGG | + | tig0042522:3427-3446 | Msa1462710:CDS | 30.0% |
| TTGAAATTGATCCATGTAGT+TGG | + | tig0042522:3555-3574 | Msa1462710:intron | 30.0% | |
| !!! | GAATGTTCACGTTTTTTTCT+TGG | + | tig0042522:3607-3626 | Msa1462710:intron | 30.0% |
| !! | CATATTGAATAGTATCGATG+CGG | + | tig0042522:3654-3673 | Msa1462710:intron | 30.0% |
| ! | TGACAGTGTTAGAACTATTT+TGG | + | tig0042522:4118-4137 | Msa1462710:CDS | 30.0% |
| ! | GACAGTGTTAGAACTATTTT+GGG | + | tig0042522:4119-4138 | Msa1462710:CDS | 30.0% |
| AAGAATACAAAAGGCTTTAC+CGG | + | tig0042522:4193-4212 | Msa1462710:CDS | 30.0% | |
| TATGATATGAAGTGAAAGCA+TGG | + | tig0042522:4303-4322 | Msa1462710:three_prime_UTR | 30.0% | |
| !! | TTTTGTTGTATATGTGTCGT+TGG | - | tig0042522:2163-2182 | Msa1462710:intergenic | 30.0% |
| GATAGGGATTCTATTATTGA+AGG | + | tig0042522:2680-2699 | Msa1462710:CDS | 30.0% | |
| GGATTCTATTATTGAAGGTT+TGG | + | tig0042522:2685-2704 | Msa1462710:CDS | 30.0% | |
| AACTTGATCATTTCTACTTC+TGG | - | tig0042522:2837-2856 | Msa1462710:intergenic | 30.0% | |
| !! | TTGTTACTGATTTACGACTT+TGG | + | tig0042522:2855-2874 | Msa1462710:CDS | 30.0% |
| GAGTTAATTGTGTACTTTAG+AGG | + | tig0042522:3260-3279 | Msa1462710:intron | 30.0% | |
| GGTAAAATAACGATGATGTT+AGG | - | tig0042522:3294-3313 | Msa1462710:intergenic | 30.0% | |
| ! | AGGATGAATTTTTGTCCTTT+AGG | + | tig0042522:3425-3444 | Msa1462710:CDS | 30.0% |
| ! | GGATGAATTTTTGTCCTTTA+GGG | + | tig0042522:3426-3445 | Msa1462710:CDS | 30.0% |
| ! | GATGAATTTTTGTCCTTTAG+GGG | + | tig0042522:3427-3446 | Msa1462710:CDS | 30.0% |
| TTGAAATTGATCCATGTAGT+TGG | + | tig0042522:3555-3574 | Msa1462710:intron | 30.0% | |
| !!! | GAATGTTCACGTTTTTTTCT+TGG | + | tig0042522:3607-3626 | Msa1462710:intron | 30.0% |
| !! | CATATTGAATAGTATCGATG+CGG | + | tig0042522:3654-3673 | Msa1462710:intron | 30.0% |
| ! | TGACAGTGTTAGAACTATTT+TGG | + | tig0042522:4118-4137 | Msa1462710:CDS | 30.0% |
| ! | GACAGTGTTAGAACTATTTT+GGG | + | tig0042522:4119-4138 | Msa1462710:CDS | 30.0% |
| AAGAATACAAAAGGCTTTAC+CGG | + | tig0042522:4193-4212 | Msa1462710:CDS | 30.0% | |
| TATGATATGAAGTGAAAGCA+TGG | + | tig0042522:4303-4322 | Msa1462710:three_prime_UTR | 30.0% | |
| ATACAACAAAAGTGAACACC+AGG | + | tig0042522:2172-2191 | Msa1462710:five_prime_UTR | 35.0% | |
| TACAACAAAAGTGAACACCA+GGG | + | tig0042522:2173-2192 | Msa1462710:five_prime_UTR | 35.0% | |
| ! | ACCTTCTTTTAAACGGGAAA+GGG | - | tig0042522:2202-2221 | Msa1462710:intergenic | 35.0% |
| ! | TGTGTCACCTTCTTTTAAAC+GGG | - | tig0042522:2208-2227 | Msa1462710:intergenic | 35.0% |
| ! | GTGTGTCACCTTCTTTTAAA+CGG | - | tig0042522:2209-2228 | Msa1462710:intergenic | 35.0% |
| ! | CCATGGATGAACAATTTTCA+GGG | - | tig0042522:2263-2282 | Msa1462710:intergenic | 35.0% |
| ! | ACCATGGATGAACAATTTTC+AGG | - | tig0042522:2264-2283 | Msa1462710:intergenic | 35.0% |
| ! | TTCGGGTTATGATGAATTTG+CGG | - | tig0042522:2386-2405 | Msa1462710:intergenic | 35.0% |
| AACCCAAAGAAGCTAAACTT+TGG | + | tig0042522:2436-2455 | Msa1462710:CDS | 35.0% | |
| ACCCAAAGAAGCTAAACTTT+GGG | + | tig0042522:2437-2456 | Msa1462710:CDS | 35.0% | |
| ATTGAAAAGAGAATCGAGAG+TGG | + | tig0042522:2713-2732 | Msa1462710:CDS | 35.0% | |
| GAAGTATGTAACTTCTTAGC+AGG | - | tig0042522:2815-2834 | Msa1462710:intergenic | 35.0% | |
| TCAACTTTCATTGCTTAAGC+TGG | + | tig0042522:2922-2941 | Msa1462710:CDS | 35.0% | |
| !! | AGAAGGTGCTGTAATAAAAC+AGG | - | tig0042522:3004-3023 | Msa1462710:intergenic | 35.0% |
| GTTTGATTGATTGTAGAGCT+AGG | + | tig0042522:3405-3424 | Msa1462710:CDS | 35.0% | |
| GATGTCATGAATCGATCAAT+GGG | - | tig0042522:3479-3498 | Msa1462710:intergenic | 35.0% | |
| ! | CATTGATCGATTCATGACAT+CGG | + | tig0042522:3478-3497 | Msa1462710:CDS | 35.0% |
| GTAAGATACCTATTCCTCAT+TGG | - | tig0042522:3524-3543 | Msa1462710:intergenic | 35.0% | |
| GAAAAAGAATCCTGATCCAA+TGG | + | tig0042522:3837-3856 | Msa1462710:CDS | 35.0% | |
| AAATCACGATTGTAAGCATG+TGG | - | tig0042522:3934-3953 | Msa1462710:intergenic | 35.0% | |
| !! | AACTATTTTGGGAATGCTTG+AGG | + | tig0042522:4130-4149 | Msa1462710:CDS | 35.0% |
| CAATCGGGAAAGAATACAAA+AGG | + | tig0042522:4184-4203 | Msa1462710:CDS | 35.0% | |
| ! | CGCTGATTATCTTGTTAAGA+AGG | + | tig0042522:4241-4260 | Msa1462710:CDS | 35.0% |
| ! | TTGATTTAGCCTTCAGTTTG+AGG | + | tig0042522:4273-4292 | Msa1462710:CDS | 35.0% |
| ! | GATTGGTTCATATCTGAACT+TGG | - | tig0042522:4353-4372 | Msa1462710:intergenic | 35.0% |
| ! | CATTAACAGGGATTTGAGAT+TGG | - | tig0042522:4370-4389 | Msa1462710:intergenic | 35.0% |
| ATACAACAAAAGTGAACACC+AGG | + | tig0042522:2172-2191 | Msa1462710:five_prime_UTR | 35.0% | |
| TACAACAAAAGTGAACACCA+GGG | + | tig0042522:2173-2192 | Msa1462710:five_prime_UTR | 35.0% | |
| ! | ACCTTCTTTTAAACGGGAAA+GGG | - | tig0042522:2202-2221 | Msa1462710:intergenic | 35.0% |
| ! | TGTGTCACCTTCTTTTAAAC+GGG | - | tig0042522:2208-2227 | Msa1462710:intergenic | 35.0% |
| ! | GTGTGTCACCTTCTTTTAAA+CGG | - | tig0042522:2209-2228 | Msa1462710:intergenic | 35.0% |
| ! | CCATGGATGAACAATTTTCA+GGG | - | tig0042522:2263-2282 | Msa1462710:intergenic | 35.0% |
| ! | ACCATGGATGAACAATTTTC+AGG | - | tig0042522:2264-2283 | Msa1462710:intergenic | 35.0% |
| ! | TTCGGGTTATGATGAATTTG+CGG | - | tig0042522:2386-2405 | Msa1462710:intergenic | 35.0% |
| AACCCAAAGAAGCTAAACTT+TGG | + | tig0042522:2436-2455 | Msa1462710:CDS | 35.0% | |
| ACCCAAAGAAGCTAAACTTT+GGG | + | tig0042522:2437-2456 | Msa1462710:CDS | 35.0% | |
| ATTGAAAAGAGAATCGAGAG+TGG | + | tig0042522:2713-2732 | Msa1462710:CDS | 35.0% | |
| GAAGTATGTAACTTCTTAGC+AGG | - | tig0042522:2815-2834 | Msa1462710:intergenic | 35.0% | |
| TCAACTTTCATTGCTTAAGC+TGG | + | tig0042522:2922-2941 | Msa1462710:CDS | 35.0% | |
| !! | AGAAGGTGCTGTAATAAAAC+AGG | - | tig0042522:3004-3023 | Msa1462710:intergenic | 35.0% |
| GTTTGATTGATTGTAGAGCT+AGG | + | tig0042522:3405-3424 | Msa1462710:CDS | 35.0% | |
| GATGTCATGAATCGATCAAT+GGG | - | tig0042522:3479-3498 | Msa1462710:intergenic | 35.0% | |
| ! | CATTGATCGATTCATGACAT+CGG | + | tig0042522:3478-3497 | Msa1462710:CDS | 35.0% |
| GTAAGATACCTATTCCTCAT+TGG | - | tig0042522:3524-3543 | Msa1462710:intergenic | 35.0% | |
| GAAAAAGAATCCTGATCCAA+TGG | + | tig0042522:3837-3856 | Msa1462710:CDS | 35.0% | |
| AAATCACGATTGTAAGCATG+TGG | - | tig0042522:3934-3953 | Msa1462710:intergenic | 35.0% | |
| !! | AACTATTTTGGGAATGCTTG+AGG | + | tig0042522:4130-4149 | Msa1462710:CDS | 35.0% |
| CAATCGGGAAAGAATACAAA+AGG | + | tig0042522:4184-4203 | Msa1462710:CDS | 35.0% | |
| ! | CGCTGATTATCTTGTTAAGA+AGG | + | tig0042522:4241-4260 | Msa1462710:CDS | 35.0% |
| ! | TTGATTTAGCCTTCAGTTTG+AGG | + | tig0042522:4273-4292 | Msa1462710:CDS | 35.0% |
| ! | GATTGGTTCATATCTGAACT+TGG | - | tig0042522:4353-4372 | Msa1462710:intergenic | 35.0% |
| ! | CATTAACAGGGATTTGAGAT+TGG | - | tig0042522:4370-4389 | Msa1462710:intergenic | 35.0% |
| TCCCTTTCCCGTTTAAAAGA+AGG | + | tig0042522:2198-2217 | Msa1462710:five_prime_UTR | 40.0% | |
| ! | CACCTTCTTTTAAACGGGAA+AGG | - | tig0042522:2203-2222 | Msa1462710:intergenic | 40.0% |
| CCCTGAAAATTGTTCATCCA+TGG | + | tig0042522:2260-2279 | Msa1462710:exon | 40.0% | |
| !! | AGTTGTTAAGGTGGTGGAAA+GGG | - | tig0042522:2343-2362 | Msa1462710:intergenic | 40.0% |
| GAATTTGCGGTTAGTGAAAG+TGG | - | tig0042522:2373-2392 | Msa1462710:intergenic | 40.0% | |
| ! | TTTGGGTTTAGCAGCATTGT+TGG | - | tig0042522:2424-2443 | Msa1462710:intergenic | 40.0% |
| ! | CCCCAAAGTTTAGCTTCTTT+GGG | - | tig0042522:2441-2460 | Msa1462710:intergenic | 40.0% |
| CCCAAAGAAGCTAAACTTTG+GGG | + | tig0042522:2438-2457 | Msa1462710:CDS | 40.0% | |
| ! | ACCCCAAAGTTTAGCTTCTT+TGG | - | tig0042522:2442-2461 | Msa1462710:intergenic | 40.0% |
| ! | AAAGAAGCTAAACTTTGGGG+TGG | + | tig0042522:2441-2460 | Msa1462710:CDS | 40.0% |
| GGATTCAGTGAATCGTTCAA+CGG | - | tig0042522:2493-2512 | Msa1462710:intergenic | 40.0% | |
| TTTGATCAGTGCGAGTGATA+GGG | + | tig0042522:2664-2683 | Msa1462710:CDS | 40.0% | |
| TCGAGAGTGGTGAGTTTAAT+TGG | + | tig0042522:2726-2745 | Msa1462710:CDS | 40.0% | |
| TAATTGGAGAGCTGATAGAG+AGG | + | tig0042522:2742-2761 | Msa1462710:CDS | 40.0% | |
| !! | GCTGCTCTTACTGATTTGAT+TGG | + | tig0042522:2785-2804 | Msa1462710:CDS | 40.0% |
| !! | AAGCTGGCTTTGAACAATCA+CGG | + | tig0042522:2938-2957 | Msa1462710:CDS | 40.0% |
| !! | AATCACGGTCTTATTGTTCC+TGG | + | tig0042522:2953-2972 | Msa1462710:CDS | 40.0% |
| CTTCAACATAAGCAAGCAGA+AGG | - | tig0042522:3021-3040 | Msa1462710:intergenic | 40.0% | |
| TCTGCTTGCTTATGTTGAAG+AGG | + | tig0042522:3021-3040 | Msa1462710:CDS | 40.0% | |
| CCACAAGCGAATGAATAAAC+CGG | - | tig0042522:3315-3334 | Msa1462710:intergenic | 40.0% | |
| CGGTTTATTCATTCGCTTGT+GGG | + | tig0042522:3313-3332 | Msa1462710:intron | 40.0% | |
| GGTTTATTCATTCGCTTGTG+GGG | + | tig0042522:3314-3333 | Msa1462710:intron | 40.0% | |
| CGATGTCATGAATCGATCAA+TGG | - | tig0042522:3480-3499 | Msa1462710:intergenic | 40.0% | |
| ATTCATGACATCGGATGCAT+TGG | + | tig0042522:3487-3506 | Msa1462710:CDS | 40.0% | |
| TTCATGACATCGGATGCATT+GGG | + | tig0042522:3488-3507 | Msa1462710:CDS | 40.0% | |
| TTACTGCTCCAATGAGGAAT+AGG | + | tig0042522:3513-3532 | Msa1462710:CDS | 40.0% | |
| TTTAACATTAGTCCCATGCC+AGG | - | tig0042522:3582-3601 | Msa1462710:intergenic | 40.0% | |
| GAAACTCCAGTAGGAAATCT+CGG | - | tig0042522:3687-3706 | Msa1462710:intergenic | 40.0% | |
| TAACAGAGAGAAACTCCAGT+AGG | - | tig0042522:3696-3715 | Msa1462710:intergenic | 40.0% | |
| ATTCTTCACCAAGTCGAGAA+AGG | - | tig0042522:3738-3757 | Msa1462710:intergenic | 40.0% | |
| !! | TTTCTCGACTTGGTGAAGAA+TGG | + | tig0042522:3737-3756 | Msa1462710:CDS | 40.0% |
| !! | TTCTCGACTTGGTGAAGAAT+GGG | + | tig0042522:3738-3757 | Msa1462710:CDS | 40.0% |
| TGTTGAAACAGAATCGCTTG+GGG | - | tig0042522:3797-3816 | Msa1462710:intergenic | 40.0% | |
| CTGTTGAAACAGAATCGCTT+GGG | - | tig0042522:3798-3817 | Msa1462710:intergenic | 40.0% | |
| ! | GGATCAGGATTCTTTTTCTG+AGG | - | tig0042522:3835-3854 | Msa1462710:intergenic | 40.0% |
| TTACCACGAACAAGTTCCAT+TGG | - | tig0042522:3856-3875 | Msa1462710:intergenic | 40.0% | |
| ACTCTTCTCACATTGTGCAA+AGG | + | tig0042522:3904-3923 | Msa1462710:CDS | 40.0% | |
| ! | TGCTTACAATCGTGATTTGC+AGG | + | tig0042522:3936-3955 | Msa1462710:CDS | 40.0% |
| !!! | GGTTGCTTTTGGTTGTAAGT+AGG | + | tig0042522:4076-4095 | Msa1462710:intron | 40.0% |
| GTTCTAACACTGTCAAACAC+TGG | - | tig0042522:4113-4132 | Msa1462710:intergenic | 40.0% | |
| TCATATCTGAACTTGGACAG+TGG | - | tig0042522:4346-4365 | Msa1462710:intergenic | 40.0% | |
| ! | GGTACTGGGTTACATTAACA+GGG | - | tig0042522:4382-4401 | Msa1462710:intergenic | 40.0% |
| CTGTTAATGTAACCCAGTAC+CGG | + | tig0042522:4381-4400 | Msa1462710:three_prime_UTR | 40.0% | |
| TCCCTTTCCCGTTTAAAAGA+AGG | + | tig0042522:2198-2217 | Msa1462710:five_prime_UTR | 40.0% | |
| ! | CACCTTCTTTTAAACGGGAA+AGG | - | tig0042522:2203-2222 | Msa1462710:intergenic | 40.0% |
| CCCTGAAAATTGTTCATCCA+TGG | + | tig0042522:2260-2279 | Msa1462710:exon | 40.0% | |
| !! | AGTTGTTAAGGTGGTGGAAA+GGG | - | tig0042522:2343-2362 | Msa1462710:intergenic | 40.0% |
| GAATTTGCGGTTAGTGAAAG+TGG | - | tig0042522:2373-2392 | Msa1462710:intergenic | 40.0% | |
| ! | TTTGGGTTTAGCAGCATTGT+TGG | - | tig0042522:2424-2443 | Msa1462710:intergenic | 40.0% |
| ! | CCCCAAAGTTTAGCTTCTTT+GGG | - | tig0042522:2441-2460 | Msa1462710:intergenic | 40.0% |
| CCCAAAGAAGCTAAACTTTG+GGG | + | tig0042522:2438-2457 | Msa1462710:CDS | 40.0% | |
| ! | ACCCCAAAGTTTAGCTTCTT+TGG | - | tig0042522:2442-2461 | Msa1462710:intergenic | 40.0% |
| ! | AAAGAAGCTAAACTTTGGGG+TGG | + | tig0042522:2441-2460 | Msa1462710:CDS | 40.0% |
| GGATTCAGTGAATCGTTCAA+CGG | - | tig0042522:2493-2512 | Msa1462710:intergenic | 40.0% | |
| TTTGATCAGTGCGAGTGATA+GGG | + | tig0042522:2664-2683 | Msa1462710:CDS | 40.0% | |
| TCGAGAGTGGTGAGTTTAAT+TGG | + | tig0042522:2726-2745 | Msa1462710:CDS | 40.0% | |
| TAATTGGAGAGCTGATAGAG+AGG | + | tig0042522:2742-2761 | Msa1462710:CDS | 40.0% | |
| !! | GCTGCTCTTACTGATTTGAT+TGG | + | tig0042522:2785-2804 | Msa1462710:CDS | 40.0% |
| !! | AAGCTGGCTTTGAACAATCA+CGG | + | tig0042522:2938-2957 | Msa1462710:CDS | 40.0% |
| !! | AATCACGGTCTTATTGTTCC+TGG | + | tig0042522:2953-2972 | Msa1462710:CDS | 40.0% |
| CTTCAACATAAGCAAGCAGA+AGG | - | tig0042522:3021-3040 | Msa1462710:intergenic | 40.0% | |
| TCTGCTTGCTTATGTTGAAG+AGG | + | tig0042522:3021-3040 | Msa1462710:CDS | 40.0% | |
| CCACAAGCGAATGAATAAAC+CGG | - | tig0042522:3315-3334 | Msa1462710:intergenic | 40.0% | |
| CGGTTTATTCATTCGCTTGT+GGG | + | tig0042522:3313-3332 | Msa1462710:intron | 40.0% | |
| GGTTTATTCATTCGCTTGTG+GGG | + | tig0042522:3314-3333 | Msa1462710:intron | 40.0% | |
| CGATGTCATGAATCGATCAA+TGG | - | tig0042522:3480-3499 | Msa1462710:intergenic | 40.0% | |
| ATTCATGACATCGGATGCAT+TGG | + | tig0042522:3487-3506 | Msa1462710:CDS | 40.0% | |
| TTCATGACATCGGATGCATT+GGG | + | tig0042522:3488-3507 | Msa1462710:CDS | 40.0% | |
| TTACTGCTCCAATGAGGAAT+AGG | + | tig0042522:3513-3532 | Msa1462710:CDS | 40.0% | |
| TTTAACATTAGTCCCATGCC+AGG | - | tig0042522:3582-3601 | Msa1462710:intergenic | 40.0% | |
| GAAACTCCAGTAGGAAATCT+CGG | - | tig0042522:3687-3706 | Msa1462710:intergenic | 40.0% | |
| TAACAGAGAGAAACTCCAGT+AGG | - | tig0042522:3696-3715 | Msa1462710:intergenic | 40.0% | |
| ATTCTTCACCAAGTCGAGAA+AGG | - | tig0042522:3738-3757 | Msa1462710:intergenic | 40.0% | |
| !! | TTTCTCGACTTGGTGAAGAA+TGG | + | tig0042522:3737-3756 | Msa1462710:CDS | 40.0% |
| !! | TTCTCGACTTGGTGAAGAAT+GGG | + | tig0042522:3738-3757 | Msa1462710:CDS | 40.0% |
| TGTTGAAACAGAATCGCTTG+GGG | - | tig0042522:3797-3816 | Msa1462710:intergenic | 40.0% | |
| CTGTTGAAACAGAATCGCTT+GGG | - | tig0042522:3798-3817 | Msa1462710:intergenic | 40.0% | |
| ! | GGATCAGGATTCTTTTTCTG+AGG | - | tig0042522:3835-3854 | Msa1462710:intergenic | 40.0% |
| TTACCACGAACAAGTTCCAT+TGG | - | tig0042522:3856-3875 | Msa1462710:intergenic | 40.0% | |
| ACTCTTCTCACATTGTGCAA+AGG | + | tig0042522:3904-3923 | Msa1462710:CDS | 40.0% | |
| ! | TGCTTACAATCGTGATTTGC+AGG | + | tig0042522:3936-3955 | Msa1462710:CDS | 40.0% |
| !!! | GGTTGCTTTTGGTTGTAAGT+AGG | + | tig0042522:4076-4095 | Msa1462710:intron | 40.0% |
| GTTCTAACACTGTCAAACAC+TGG | - | tig0042522:4113-4132 | Msa1462710:intergenic | 40.0% | |
| TCATATCTGAACTTGGACAG+TGG | - | tig0042522:4346-4365 | Msa1462710:intergenic | 40.0% | |
| ! | GGTACTGGGTTACATTAACA+GGG | - | tig0042522:4382-4401 | Msa1462710:intergenic | 40.0% |
| CGCTGAGAACGCACTTATTT+CGG | + | tig0042522:2232-2251 | Msa1462710:five_prime_UTR | 45.0% | |
| GAGAGCTGAAGAGAAAACCA+TGG | - | tig0042522:2280-2299 | Msa1462710:intergenic | 45.0% | |
| !! | GAGTTGTTAAGGTGGTGGAA+AGG | - | tig0042522:2344-2363 | Msa1462710:intergenic | 45.0% |
| ! | AGTGGAGGATCGAGTTGTTA+AGG | - | tig0042522:2355-2374 | Msa1462710:intergenic | 45.0% |
| TTTGCGGTTAGTGAAAGTGG+AGG | - | tig0042522:2370-2389 | Msa1462710:intergenic | 45.0% | |
| !! | AGCAGCATTGTTGGTGGTTT+GGG | - | tig0042522:2415-2434 | Msa1462710:intergenic | 45.0% |
| !! | TAGCAGCATTGTTGGTGGTT+TGG | - | tig0042522:2416-2435 | Msa1462710:intergenic | 45.0% |
| GTTTGATCAGTGCGAGTGAT+AGG | + | tig0042522:2663-2682 | Msa1462710:CDS | 45.0% | |
| CGCTGCAAATGAGTATAACC+AGG | - | tig0042522:2974-2993 | Msa1462710:intergenic | 45.0% | |
| CCGGTTTATTCATTCGCTTG+TGG | + | tig0042522:3312-3331 | Msa1462710:intron | 45.0% | |
| ATCACGCTCAATCTGCAAGA+GGG | - | tig0042522:3378-3397 | Msa1462710:intergenic | 45.0% | |
| TGGGATTTACTGCTCCAATG+AGG | + | tig0042522:3507-3526 | Msa1462710:CDS | 45.0% | |
| TTGATCCATGTAGTTGGACC+TGG | + | tig0042522:3561-3580 | Msa1462710:intron | 45.0% | |
| TTCTGACCGAGATTTCCTAC+TGG | + | tig0042522:3678-3697 | Msa1462710:CDS | 45.0% | |
| ! | TTGGTGAAGAATGGGTACTG+TGG | + | tig0042522:3746-3765 | Msa1462710:CDS | 45.0% |
| ! | TGGTGAAGAATGGGTACTGT+GGG | + | tig0042522:3747-3766 | Msa1462710:CDS | 45.0% |
| CCTGTTGAAACAGAATCGCT+TGG | - | tig0042522:3799-3818 | Msa1462710:intergenic | 45.0% | |
| CCAAGCGATTCTGTTTCAAC+AGG | + | tig0042522:3796-3815 | Msa1462710:CDS | 45.0% | |
| CGAACAAGTTCCATTGGATC+AGG | - | tig0042522:3850-3869 | Msa1462710:intergenic | 45.0% | |
| ! | GATCCAATGGAACTTGTTCG+TGG | + | tig0042522:3850-3869 | Msa1462710:CDS | 45.0% |
| GTAAGTCTGCCAGAGTCATA+GGG | + | tig0042522:3872-3891 | Msa1462710:CDS | 45.0% | |
| TAAGTCTGCCAGAGTCATAG+GGG | + | tig0042522:3873-3892 | Msa1462710:CDS | 45.0% | |
| AACTGCAGAGAAAACACGCA+AGG | - | tig0042522:4000-4019 | Msa1462710:intergenic | 45.0% | |
| ATACAAAAGGCTTTACCGGC+TGG | + | tig0042522:4197-4216 | Msa1462710:CDS | 45.0% | |
| GTTGCATCAAGATAACCAGC+CGG | - | tig0042522:4215-4234 | Msa1462710:intergenic | 45.0% | |
| TATCTGAACTTGGACAGTGG+CGG | - | tig0042522:4343-4362 | Msa1462710:intergenic | 45.0% | |
| ! | CGGTACTGGGTTACATTAAC+AGG | - | tig0042522:4383-4402 | Msa1462710:intergenic | 45.0% |
| CGCTGAGAACGCACTTATTT+CGG | + | tig0042522:2232-2251 | Msa1462710:five_prime_UTR | 45.0% | |
| GAGAGCTGAAGAGAAAACCA+TGG | - | tig0042522:2280-2299 | Msa1462710:intergenic | 45.0% | |
| !! | GAGTTGTTAAGGTGGTGGAA+AGG | - | tig0042522:2344-2363 | Msa1462710:intergenic | 45.0% |
| ! | AGTGGAGGATCGAGTTGTTA+AGG | - | tig0042522:2355-2374 | Msa1462710:intergenic | 45.0% |
| TTTGCGGTTAGTGAAAGTGG+AGG | - | tig0042522:2370-2389 | Msa1462710:intergenic | 45.0% | |
| !! | AGCAGCATTGTTGGTGGTTT+GGG | - | tig0042522:2415-2434 | Msa1462710:intergenic | 45.0% |
| !! | TAGCAGCATTGTTGGTGGTT+TGG | - | tig0042522:2416-2435 | Msa1462710:intergenic | 45.0% |
| GTTTGATCAGTGCGAGTGAT+AGG | + | tig0042522:2663-2682 | Msa1462710:CDS | 45.0% | |
| CGCTGCAAATGAGTATAACC+AGG | - | tig0042522:2974-2993 | Msa1462710:intergenic | 45.0% | |
| CCGGTTTATTCATTCGCTTG+TGG | + | tig0042522:3312-3331 | Msa1462710:intron | 45.0% | |
| ATCACGCTCAATCTGCAAGA+GGG | - | tig0042522:3378-3397 | Msa1462710:intergenic | 45.0% | |
| TGGGATTTACTGCTCCAATG+AGG | + | tig0042522:3507-3526 | Msa1462710:CDS | 45.0% | |
| TTGATCCATGTAGTTGGACC+TGG | + | tig0042522:3561-3580 | Msa1462710:intron | 45.0% | |
| TTCTGACCGAGATTTCCTAC+TGG | + | tig0042522:3678-3697 | Msa1462710:CDS | 45.0% | |
| ! | TTGGTGAAGAATGGGTACTG+TGG | + | tig0042522:3746-3765 | Msa1462710:CDS | 45.0% |
| ! | TGGTGAAGAATGGGTACTGT+GGG | + | tig0042522:3747-3766 | Msa1462710:CDS | 45.0% |
| CCTGTTGAAACAGAATCGCT+TGG | - | tig0042522:3799-3818 | Msa1462710:intergenic | 45.0% | |
| CCAAGCGATTCTGTTTCAAC+AGG | + | tig0042522:3796-3815 | Msa1462710:CDS | 45.0% | |
| CGAACAAGTTCCATTGGATC+AGG | - | tig0042522:3850-3869 | Msa1462710:intergenic | 45.0% | |
| ! | GATCCAATGGAACTTGTTCG+TGG | + | tig0042522:3850-3869 | Msa1462710:CDS | 45.0% |
| GTAAGTCTGCCAGAGTCATA+GGG | + | tig0042522:3872-3891 | Msa1462710:CDS | 45.0% | |
| TAAGTCTGCCAGAGTCATAG+GGG | + | tig0042522:3873-3892 | Msa1462710:CDS | 45.0% | |
| AACTGCAGAGAAAACACGCA+AGG | - | tig0042522:4000-4019 | Msa1462710:intergenic | 45.0% | |
| ATACAAAAGGCTTTACCGGC+TGG | + | tig0042522:4197-4216 | Msa1462710:CDS | 45.0% | |
| GTTGCATCAAGATAACCAGC+CGG | - | tig0042522:4215-4234 | Msa1462710:intergenic | 45.0% | |
| TATCTGAACTTGGACAGTGG+CGG | - | tig0042522:4343-4362 | Msa1462710:intergenic | 45.0% | |
| ! | CGGTACTGGGTTACATTAAC+AGG | - | tig0042522:4383-4402 | Msa1462710:intergenic | 45.0% |
| !! | CGTGGCTGTTTCTAAAGGGT+TGG | + | tig0042522:2131-2150 | Msa1462710:five_prime_UTR | 50.0% |
| TAAACGGGAAAGGGATTCCC+TGG | - | tig0042522:2193-2212 | Msa1462710:intergenic | 50.0% | |
| !! | TAAGGTGGTGGAAAGGGAGT+GGG | - | tig0042522:2337-2356 | Msa1462710:intergenic | 50.0% |
| !! | TTAAGGTGGTGGAAAGGGAG+TGG | - | tig0042522:2338-2357 | Msa1462710:intergenic | 50.0% |
| ! | GGATCGAGTTGTTAAGGTGG+TGG | - | tig0042522:2349-2368 | Msa1462710:intergenic | 50.0% |
| ! | GGAGGATCGAGTTGTTAAGG+TGG | - | tig0042522:2352-2371 | Msa1462710:intergenic | 50.0% |
| ! | TGGTGGTTTGGGCTTGCATT+CGG | - | tig0042522:2404-2423 | Msa1462710:intergenic | 50.0% |
| GGGTTTAGCAGCATTGTTGG+TGG | - | tig0042522:2421-2440 | Msa1462710:intergenic | 50.0% | |
| TGGGGTGGTAGATTCGAAGA+AGG | + | tig0042522:2456-2475 | Msa1462710:CDS | 50.0% | |
| AGTGAATCGTTCAACGGCGT+CGG | - | tig0042522:2487-2506 | Msa1462710:intergenic | 50.0% | |
| TGCATCCATGCTCGCTAAAC+AGG | + | tig0042522:2566-2585 | Msa1462710:CDS | 50.0% | |
| CCTAACCTGTTTAGCGAGCA+TGG | - | tig0042522:2574-2593 | Msa1462710:intergenic | 50.0% | |
| CCATGCTCGCTAAACAGGTT+AGG | + | tig0042522:2571-2590 | Msa1462710:intron | 50.0% | |
| TCACGCTCAATCTGCAAGAG+GGG | - | tig0042522:3377-3396 | Msa1462710:intergenic | 50.0% | |
| CATCACGCTCAATCTGCAAG+AGG | - | tig0042522:3379-3398 | Msa1462710:intergenic | 50.0% | |
| TTGCAGATTGAGCGTGATGC+TGG | + | tig0042522:3380-3399 | Msa1462710:intron | 50.0% | |
| CATGTAGTTGGACCTGGCAT+GGG | + | tig0042522:3567-3586 | Msa1462710:intron | 50.0% | |
| ! | AGAAAGGTGCACTGCTGTGA+TGG | - | tig0042522:3722-3741 | Msa1462710:intergenic | 50.0% |
| CTGTGGGCTTCAGAGGAATT+TGG | + | tig0042522:3763-3782 | Msa1462710:CDS | 50.0% | |
| GGTAAGTCTGCCAGAGTCAT+AGG | + | tig0042522:3871-3890 | Msa1462710:CDS | 50.0% | |
| AAGTCTGCCAGAGTCATAGG+GGG | + | tig0042522:3874-3893 | Msa1462710:CDS | 50.0% | |
| ATCTGAACTTGGACAGTGGC+GGG | - | tig0042522:4342-4361 | Msa1462710:intergenic | 50.0% | |
| !! | CGTGGCTGTTTCTAAAGGGT+TGG | + | tig0042522:2131-2150 | Msa1462710:five_prime_UTR | 50.0% |
| TAAACGGGAAAGGGATTCCC+TGG | - | tig0042522:2193-2212 | Msa1462710:intergenic | 50.0% | |
| !! | TAAGGTGGTGGAAAGGGAGT+GGG | - | tig0042522:2337-2356 | Msa1462710:intergenic | 50.0% |
| !! | TTAAGGTGGTGGAAAGGGAG+TGG | - | tig0042522:2338-2357 | Msa1462710:intergenic | 50.0% |
| ! | GGATCGAGTTGTTAAGGTGG+TGG | - | tig0042522:2349-2368 | Msa1462710:intergenic | 50.0% |
| ! | GGAGGATCGAGTTGTTAAGG+TGG | - | tig0042522:2352-2371 | Msa1462710:intergenic | 50.0% |
| ! | TGGTGGTTTGGGCTTGCATT+CGG | - | tig0042522:2404-2423 | Msa1462710:intergenic | 50.0% |
| GGGTTTAGCAGCATTGTTGG+TGG | - | tig0042522:2421-2440 | Msa1462710:intergenic | 50.0% | |
| TGGGGTGGTAGATTCGAAGA+AGG | + | tig0042522:2456-2475 | Msa1462710:CDS | 50.0% | |
| AGTGAATCGTTCAACGGCGT+CGG | - | tig0042522:2487-2506 | Msa1462710:intergenic | 50.0% | |
| TGCATCCATGCTCGCTAAAC+AGG | + | tig0042522:2566-2585 | Msa1462710:CDS | 50.0% | |
| CCTAACCTGTTTAGCGAGCA+TGG | - | tig0042522:2574-2593 | Msa1462710:intergenic | 50.0% | |
| CCATGCTCGCTAAACAGGTT+AGG | + | tig0042522:2571-2590 | Msa1462710:intron | 50.0% | |
| TCACGCTCAATCTGCAAGAG+GGG | - | tig0042522:3377-3396 | Msa1462710:intergenic | 50.0% | |
| CATCACGCTCAATCTGCAAG+AGG | - | tig0042522:3379-3398 | Msa1462710:intergenic | 50.0% | |
| TTGCAGATTGAGCGTGATGC+TGG | + | tig0042522:3380-3399 | Msa1462710:intron | 50.0% | |
| CATGTAGTTGGACCTGGCAT+GGG | + | tig0042522:3567-3586 | Msa1462710:intron | 50.0% | |
| ! | AGAAAGGTGCACTGCTGTGA+TGG | - | tig0042522:3722-3741 | Msa1462710:intergenic | 50.0% |
| CTGTGGGCTTCAGAGGAATT+TGG | + | tig0042522:3763-3782 | Msa1462710:CDS | 50.0% | |
| GGTAAGTCTGCCAGAGTCAT+AGG | + | tig0042522:3871-3890 | Msa1462710:CDS | 50.0% | |
| AAGTCTGCCAGAGTCATAGG+GGG | + | tig0042522:3874-3893 | Msa1462710:CDS | 50.0% | |
| ATCTGAACTTGGACAGTGGC+GGG | - | tig0042522:4342-4361 | Msa1462710:intergenic | 50.0% | |
| TGGTGGAAAGGGAGTGGGTA+CGG | - | tig0042522:2332-2351 | Msa1462710:intergenic | 55.0% | |
| ! | GGTGGTTTGGGCTTGCATTC+GGG | - | tig0042522:2403-2422 | Msa1462710:intergenic | 55.0% |
| ! | TCCTTTAGGGGCTTGTGCGT+TGG | + | tig0042522:3439-3458 | Msa1462710:CDS | 55.0% |
| !! | CTTGTGCGTTGGCTGGTACA+GGG | + | tig0042522:3450-3469 | Msa1462710:CDS | 55.0% |
| CCATGCCAGGTCCAACTACA+TGG | - | tig0042522:3569-3588 | Msa1462710:intergenic | 55.0% | |
| CCATGTAGTTGGACCTGGCA+TGG | + | tig0042522:3566-3585 | Msa1462710:intron | 55.0% | |
| GCAGTGCACCTTTCTCGACT+TGG | + | tig0042522:3727-3746 | Msa1462710:CDS | 55.0% | |
| ! | ATGGGTACTGTGGGCTTCAG+AGG | + | tig0042522:3756-3775 | Msa1462710:CDS | 55.0% |
| TGCCAGAGTCATAGGGGGTT+TGG | + | tig0042522:3879-3898 | Msa1462710:CDS | 55.0% | |
| GACCAAACCCCCTATGACTC+TGG | - | tig0042522:3884-3903 | Msa1462710:intergenic | 55.0% | |
| TGGTGGAAAGGGAGTGGGTA+CGG | - | tig0042522:2332-2351 | Msa1462710:intergenic | 55.0% | |
| ! | GGTGGTTTGGGCTTGCATTC+GGG | - | tig0042522:2403-2422 | Msa1462710:intergenic | 55.0% |
| ! | TCCTTTAGGGGCTTGTGCGT+TGG | + | tig0042522:3439-3458 | Msa1462710:CDS | 55.0% |
| !! | CTTGTGCGTTGGCTGGTACA+GGG | + | tig0042522:3450-3469 | Msa1462710:CDS | 55.0% |
| CCATGCCAGGTCCAACTACA+TGG | - | tig0042522:3569-3588 | Msa1462710:intergenic | 55.0% | |
| CCATGTAGTTGGACCTGGCA+TGG | + | tig0042522:3566-3585 | Msa1462710:intron | 55.0% | |
| GCAGTGCACCTTTCTCGACT+TGG | + | tig0042522:3727-3746 | Msa1462710:CDS | 55.0% | |
| ! | ATGGGTACTGTGGGCTTCAG+AGG | + | tig0042522:3756-3775 | Msa1462710:CDS | 55.0% |
| TGCCAGAGTCATAGGGGGTT+TGG | + | tig0042522:3879-3898 | Msa1462710:CDS | 55.0% | |
| GACCAAACCCCCTATGACTC+TGG | - | tig0042522:3884-3903 | Msa1462710:intergenic | 55.0% | |
| GAGTGGGTACGGAGTGGAGA+GGG | - | tig0042522:2321-2340 | Msa1462710:intergenic | 60.0% | |
| GAAAGGGAGTGGGTACGGAG+TGG | - | tig0042522:2327-2346 | Msa1462710:intergenic | 60.0% | |
| GCCAACGCACAAGCCCCTAA+AGG | - | tig0042522:3443-3462 | Msa1462710:intergenic | 60.0% | |
| ! | TTAGGGGCTTGTGCGTTGGC+TGG | + | tig0042522:3443-3462 | Msa1462710:CDS | 60.0% |
| !! | GCTTGTGCGTTGGCTGGTAC+AGG | + | tig0042522:3449-3468 | Msa1462710:CDS | 60.0% |
| GAGTGGGTACGGAGTGGAGA+GGG | - | tig0042522:2321-2340 | Msa1462710:intergenic | 60.0% | |
| GAAAGGGAGTGGGTACGGAG+TGG | - | tig0042522:2327-2346 | Msa1462710:intergenic | 60.0% | |
| GCCAACGCACAAGCCCCTAA+AGG | - | tig0042522:3443-3462 | Msa1462710:intergenic | 60.0% | |
| ! | TTAGGGGCTTGTGCGTTGGC+TGG | + | tig0042522:3443-3462 | Msa1462710:CDS | 60.0% |
| !! | GCTTGTGCGTTGGCTGGTAC+AGG | + | tig0042522:3449-3468 | Msa1462710:CDS | 60.0% |
| GGAGTGGGTACGGAGTGGAG+AGG | - | tig0042522:2322-2341 | Msa1462710:intergenic | 65.0% | |
| GGAGTGGGTACGGAGTGGAG+AGG | - | tig0042522:2322-2341 | Msa1462710:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0042522 | gene | 2129 | 4403 | 2129 | ID=Msa1462710;Name=Msa1462710 |
| tig0042522 | mRNA | 2129 | 4403 | 2129 | ID=Msa1462710-mRNA-1;Parent=Msa1462710;Name=Msa1462710-mRNA-1;_AED=0.02;_eAED=0.02;_QI=150|1|1|1|1|1|5|105|443 |
| tig0042522 | exon | 2129 | 2587 | 2129 | ID=Msa1462710-mRNA-1:exon:23774;Parent=Msa1462710-mRNA-1 |
| tig0042522 | exon | 2662 | 3042 | 2662 | ID=Msa1462710-mRNA-1:exon:23775;Parent=Msa1462710-mRNA-1 |
| tig0042522 | exon | 3386 | 3534 | 3386 | ID=Msa1462710-mRNA-1:exon:23776;Parent=Msa1462710-mRNA-1 |
| tig0042522 | exon | 3666 | 3957 | 3666 | ID=Msa1462710-mRNA-1:exon:23777;Parent=Msa1462710-mRNA-1 |
| tig0042522 | exon | 4098 | 4403 | 4098 | ID=Msa1462710-mRNA-1:exon:23778;Parent=Msa1462710-mRNA-1 |
| tig0042522 | five_prime_UTR | 2129 | 2278 | 2129 | ID=Msa1462710-mRNA-1:five_prime_utr;Parent=Msa1462710-mRNA-1 |
| tig0042522 | CDS | 2279 | 2587 | 2279 | ID=Msa1462710-mRNA-1:cds;Parent=Msa1462710-mRNA-1 |
| tig0042522 | CDS | 2662 | 3042 | 2662 | ID=Msa1462710-mRNA-1:cds;Parent=Msa1462710-mRNA-1 |
| tig0042522 | CDS | 3386 | 3534 | 3386 | ID=Msa1462710-mRNA-1:cds;Parent=Msa1462710-mRNA-1 |
| tig0042522 | CDS | 3666 | 3957 | 3666 | ID=Msa1462710-mRNA-1:cds;Parent=Msa1462710-mRNA-1 |
| tig0042522 | CDS | 4098 | 4298 | 4098 | ID=Msa1462710-mRNA-1:cds;Parent=Msa1462710-mRNA-1 |
| tig0042522 | three_prime_UTR | 4299 | 4403 | 4299 | ID=Msa1462710-mRNA-1:three_prime_utr;Parent=Msa1462710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
