AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000112

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000112.t1 MTR_1g054035 97.656 384 9 0 1 384 1 384 0.0 782
MS.gene000112.t1 MTR_7g093200 79.427 384 77 2 1 383 51 433 0.0 652
MS.gene000112.t1 MTR_1g111880 68.750 384 98 3 1 384 5 366 0.0 526
MS.gene000112.t1 MTR_5g071170 38.066 331 185 7 18 345 30 343 4.66e-70 225
MS.gene000112.t1 MTR_7g068780 39.009 323 177 8 26 345 92 397 1.66e-64 212
MS.gene000112.t1 MTR_4g015630 38.080 323 180 8 26 345 86 391 4.19e-64 211
MS.gene000112.t1 MTR_3g464330 38.080 323 180 6 26 345 29 334 2.28e-63 207
MS.gene000112.t1 MTR_7g068780 33.948 271 156 7 26 295 92 340 2.04e-37 138
MS.gene000112.t1 MTR_4g130980 24.762 315 209 9 33 344 105 394 2.83e-21 95.5
MS.gene000112.t1 MTR_2g460790 24.642 349 220 11 33 371 106 421 3.57e-21 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000112.t1 AT3G12120 75.521 384 93 1 1 384 1 383 0.0 618
MS.gene000112.t1 AT3G12120 75.521 384 93 1 1 384 1 383 0.0 618
MS.gene000112.t1 AT3G11170 38.279 337 188 8 12 345 76 395 1.88e-68 223
MS.gene000112.t1 AT2G29980 39.628 323 175 7 26 345 28 333 5.15e-68 220
MS.gene000112.t1 AT5G05580 37.243 341 195 7 8 345 64 388 4.11e-65 214
MS.gene000112.t1 AT5G05580 35.736 333 195 7 6 335 62 378 8.30e-59 196
MS.gene000112.t1 AT2G29980 34.672 274 156 6 26 298 28 279 2.34e-42 150
MS.gene000112.t1 AT4G30950 24.355 349 221 12 10 344 76 395 2.16e-19 89.7

Find 109 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGGTTATTTGTGTTTA+TGG 0.099700 1.3:+37911372 MS.gene000112:CDS
CAAAGCTGTGAAACCAATTT+TGG 0.111068 1.3:+37911626 MS.gene000112:CDS
TACTTAGCCTTCAATGTTTC+AGG 0.146010 1.3:+37911204 MS.gene000112:CDS
ATTCCACTTCTTATTGTTAA+TGG 0.149286 1.3:+37911396 MS.gene000112:CDS
ATTTGGCGTGGCCCGTTTAT+TGG 0.151456 1.3:+37910875 MS.gene000112:CDS
TCCACATAACCTCTCATATT+TGG 0.215212 1.3:+37910858 MS.gene000112:CDS
TGATAATATTCACCCAAAAT+TGG 0.233269 1.3:-37911639 None:intergenic
TCTTTCACGATCTGAGTAAA+TGG 0.246402 1.3:-37911271 None:intergenic
GCTACTGTGGATAGAGATTA+TGG 0.255687 1.3:+37911510 MS.gene000112:CDS
GTGAGATTAAAGGTGTTTAT+TGG 0.270914 1.3:+37911739 MS.gene000112:CDS
CGGGCTTTACCGTCTTGTTT+TGG 0.295294 1.3:+37911338 MS.gene000112:CDS
AGATTATGGAATTCTTAATA+AGG 0.302183 1.3:+37911524 MS.gene000112:CDS
TTTGGCGTGGCCCGTTTATT+GGG 0.305802 1.3:+37910876 MS.gene000112:CDS
CTCCACATAGCTTTGTAAAT+AGG 0.306944 1.3:-37911675 None:intergenic
TTCCACTTCTTATTGTTAAT+GGG 0.310322 1.3:+37911397 MS.gene000112:CDS
TCTTTGTGATGGAGGATTAG+AGG 0.319531 1.3:-37910644 None:intergenic
GATGAAGGTAGTGAGATTAA+AGG 0.339285 1.3:+37911729 MS.gene000112:CDS
ATAGGAAAATGATCGAATTA+AGG 0.343029 1.3:-37910770 None:intergenic
GGATTCTCGCAGTTTCTTAC+GGG 0.352225 1.3:+37911319 MS.gene000112:CDS
TCCTTGGATGGCCCAATAAA+CGG 0.372474 1.3:-37910887 None:intergenic
CAAATTTATGTTTCAGATGC+CGG 0.378498 1.3:+37911297 MS.gene000112:CDS
GGGATTCTCGCAGTTTCTTA+CGG 0.381488 1.3:+37911318 MS.gene000112:CDS
ATGCATTCTAACCGGACTTT+GGG 0.385924 1.3:+37910909 MS.gene000112:CDS
CTCATTATGATTCTACTGAA+TGG 0.388491 1.3:+37911466 MS.gene000112:CDS
TGTTCTTCATTCATGCCTCT+TGG 0.389134 1.3:+37910999 MS.gene000112:CDS
CAAAATTGGTTTCACAGCTT+TGG 0.389767 1.3:-37911625 None:intergenic
GGATTGGATGAGGGGTGCTT+TGG 0.393497 1.3:+37911488 MS.gene000112:CDS
TCTGAGTAAATGGGTCCATA+TGG 0.415261 1.3:-37911261 None:intergenic
ATGCATTTAGTAATTATCAA+TGG 0.415395 1.3:+37910956 MS.gene000112:CDS
TCATTATGATTCTACTGAAT+GGG 0.420347 1.3:+37911467 MS.gene000112:CDS
GATGCATTCTAACCGGACTT+TGG 0.420377 1.3:+37910908 MS.gene000112:CDS
TTTGGCCCAAGGGTTGAATT+GGG 0.427900 1.3:+37911356 MS.gene000112:CDS
AAAGTAATTTGTGGCTATGT+AGG 0.434971 1.3:-37910827 None:intergenic
AAATAACCCAATTCAACCCT+TGG 0.444172 1.3:-37911362 None:intergenic
TGCATTTAGTAATTATCAAT+GGG 0.449274 1.3:+37910957 MS.gene000112:CDS
CCTTGGATGGCCCAATAAAC+GGG 0.460124 1.3:-37910886 None:intergenic
TTGACTTCACCAAGAGTGAA+TGG 0.460333 1.3:-37910715 None:intergenic
GAATCATAATGAGGCAAAGC+AGG 0.463757 1.3:-37911456 None:intergenic
AGCTATGTGGAGAGAGGCTA+AGG 0.464534 1.3:+37911686 MS.gene000112:CDS
ATCCAAGGATGCATTCTAAC+CGG 0.466935 1.3:+37910901 MS.gene000112:CDS
GCCTCACATTACGACCCATA+TGG 0.473488 1.3:+37911246 MS.gene000112:CDS
CTACTGAATGGGATTGGATG+AGG 0.479462 1.3:+37911478 MS.gene000112:CDS
AAATTTATGTTTCAGATGCC+GGG 0.491484 1.3:+37911298 MS.gene000112:CDS
CTTTCACGATCTGAGTAAAT+GGG 0.494362 1.3:-37911270 None:intergenic
GTAGGCAAGGATTGATGCTA+TGG 0.503319 1.3:-37910809 None:intergenic
GTCCGGTTAGAATGCATCCT+TGG 0.507186 1.3:-37910903 None:intergenic
CCCGTTTATTGGGCCATCCA+AGG 0.510594 1.3:+37910886 MS.gene000112:CDS
GGTTAGAATGCATCCTTGGA+TGG 0.514645 1.3:-37910899 None:intergenic
ATGATTCTACTGAATGGGAT+TGG 0.519359 1.3:+37911472 MS.gene000112:CDS
CTTTATGTTGAGGCTGATGA+AGG 0.523534 1.3:+37911714 MS.gene000112:CDS
GTGTGCAATGACCCAAAGTC+CGG 0.524456 1.3:-37910920 None:intergenic
ATCTTCCTAGTGGGTTGTCA+AGG 0.527107 1.3:-37911140 None:intergenic
GCCAAATATGAGAGGTTATG+TGG 0.527111 1.3:-37910859 None:intergenic
ACAAAACCACCATTCACTCT+TGG 0.537951 1.3:+37910706 MS.gene000112:CDS
AAGGGTATGAAAGTAATTTG+TGG 0.538654 1.3:-37910836 None:intergenic
CTCACCATAACACTCACTCT+TGG 0.540480 1.3:+37911171 MS.gene000112:CDS
AATAACCCAATTCAACCCTT+GGG 0.543738 1.3:-37911361 None:intergenic
TATGCCTCATTATCATGCTA+TGG 0.543872 1.3:+37911596 MS.gene000112:CDS
GGGCCGACCTGAAACATTGA+AGG 0.545937 1.3:-37911211 None:intergenic
CTGAGTAAATGGGTCCATAT+GGG 0.547451 1.3:-37911260 None:intergenic
AACCCATTAACAATAAGAAG+TGG 0.549731 1.3:-37911399 None:intergenic
TTTCAGGTCGGCCCTACGAT+AGG 0.551564 1.3:+37911220 MS.gene000112:CDS
TACTGAATGGGATTGGATGA+GGG 0.551568 1.3:+37911479 MS.gene000112:CDS
CCATAACACTCACTCTTGGT+TGG 0.553191 1.3:+37911175 MS.gene000112:CDS
GAGGGGTGCTTTGGCTACTG+TGG 0.560295 1.3:+37911497 MS.gene000112:CDS
GGTAAGGTCAACAATGACAT+AGG 0.560671 1.3:-37910788 None:intergenic
GAATGATGAACATTTGAAGA+GGG 0.563157 1.3:+37910675 MS.gene000112:CDS
GCTTCCATAGCATGATAATG+AGG 0.565031 1.3:-37911600 None:intergenic
GTAAGAAACTGCGAGAATCC+CGG 0.566019 1.3:-37911316 None:intergenic
TGGGTCATTGCACACGAATG+TGG 0.569167 1.3:+37910928 MS.gene000112:CDS
CCAACCAAGAGTGAGTGTTA+TGG 0.573998 1.3:-37911175 None:intergenic
AATATGAGAGGTTATGTGGA+AGG 0.574811 1.3:-37910855 None:intergenic
CAATGGGTCGACGATCTAGT+TGG 0.577884 1.3:+37910973 MS.gene000112:CDS
TAAGGAGTGTCTTTATGTTG+AGG 0.578516 1.3:+37911704 MS.gene000112:CDS
CAAGGATTGATGCTATGGTA+AGG 0.584896 1.3:-37910804 None:intergenic
GGTTGTGTGAAAATGGGAGC+AGG 0.590673 1.3:+37910613 None:intergenic
ACTGAATGGGATTGGATGAG+GGG 0.590841 1.3:+37911480 MS.gene000112:CDS
AATTTGTGGCTATGTAGGCA+AGG 0.591021 1.3:-37910822 None:intergenic
ATTGATAATTACTAAATGCA+TGG 0.593230 1.3:-37910954 None:intergenic
AGAATGATGAACATTTGAAG+AGG 0.594391 1.3:+37910674 MS.gene000112:CDS
ACATTGAAGGCTAAGTAAAG+TGG 0.595170 1.3:-37911198 None:intergenic
CAAGAGAACCTGTGTTAGAG+TGG 0.596352 1.3:-37911059 None:intergenic
CGTCGCCACCACTCTAACAC+AGG 0.596811 1.3:+37911051 MS.gene000112:CDS
CTCCTATTTACAAAGCTATG+TGG 0.601766 1.3:+37911673 MS.gene000112:CDS
AAATACCTTGACAACCCACT+AGG 0.604712 1.3:+37911135 MS.gene000112:CDS
TAGCCTTCAATGTTTCAGGT+CGG 0.609244 1.3:+37911208 MS.gene000112:CDS
TCCATATGGGTCGTAATGTG+AGG 0.611830 1.3:-37911247 None:intergenic
ATATGAGAGGTTATGTGGAA+GGG 0.613172 1.3:-37910854 None:intergenic
GTGTAAGAAATCTTCCTAGT+GGG 0.619593 1.3:-37911149 None:intergenic
CTGTGTTAGAGTGGTGGCGA+CGG 0.626545 1.3:-37911050 None:intergenic
AGGTTCTCTTGAACGTGACG+AGG 0.626874 1.3:+37911071 MS.gene000112:CDS
CATTCAGTAGAATCATAATG+AGG 0.627483 1.3:-37911465 None:intergenic
GAGAACCTGTGTTAGAGTGG+TGG 0.637244 1.3:-37911056 None:intergenic
AGTGTAAGAAATCTTCCTAG+TGG 0.637501 1.3:-37911150 None:intergenic
ATGTGAGGCGAACCTATCGT+AGG 0.637515 1.3:-37911232 None:intergenic
TTACAAAGCTATGTGGAGAG+AGG 0.639770 1.3:+37911680 MS.gene000112:CDS
ACCCTTGGGCCAAAACAAGA+CGG 0.646867 1.3:-37911347 None:intergenic
AAAATGATCGAATTAAGGAA+CGG 0.647354 1.3:-37910765 None:intergenic
TGTGAGGCGAACCTATCGTA+GGG 0.648455 1.3:-37911231 None:intergenic
GAACGGTTAAAACAATGTGG+TGG 0.652401 1.3:-37910748 None:intergenic
AGAGGCATGAATGAAGAACA+AGG 0.653383 1.3:-37910996 None:intergenic
TAACATAACTGATACTCATG+TGG 0.653989 1.3:+37911554 MS.gene000112:CDS
ATAACCTCTCATATTTGGCG+TGG 0.658374 1.3:+37910863 MS.gene000112:CDS
AATCATAATGAGGCAAAGCA+GGG 0.659916 1.3:-37911455 None:intergenic
CGGGCCACGCCAAATATGAG+AGG 0.665310 1.3:-37910867 None:intergenic
TGTGTGAAAATGGGAGCAGG+TGG 0.677446 1.3:+37910616 None:intergenic
ACTTCACCAAGAGTGAATGG+TGG 0.679603 1.3:-37910712 None:intergenic
GATAATTACTAAATGCATGG+TGG 0.685300 1.3:-37910951 None:intergenic
AAGGAACGGTTAAAACAATG+TGG 0.703232 1.3:-37910751 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTATGGAATTCTTAATA+AGG + chr1.3:37911524-37911543 MS.gene000112:CDS 20.0%
!! ATGCATTTAGTAATTATCAA+TGG + chr1.3:37910956-37910975 MS.gene000112:CDS 20.0%
!! TGCATTTAGTAATTATCAAT+GGG + chr1.3:37910957-37910976 MS.gene000112:CDS 20.0%
!!! ATTGATAATTACTAAATGCA+TGG - chr1.3:37910957-37910976 None:intergenic 20.0%
!!! GTGAATATTATCATTTTGAT+GGG + chr1.3:37911649-37911668 MS.gene000112:CDS 20.0%
! AAAATGATCGAATTAAGGAA+CGG - chr1.3:37910768-37910787 None:intergenic 25.0%
! AATTGGGTTATTTGTGTTTA+TGG + chr1.3:37911372-37911391 MS.gene000112:CDS 25.0%
! AGAAAAAATCTCAAATTGGT+TGG + chr1.3:37911106-37911125 MS.gene000112:CDS 25.0%
! ATAGGAAAATGATCGAATTA+AGG - chr1.3:37910773-37910792 None:intergenic 25.0%
! ATTCCACTTCTTATTGTTAA+TGG + chr1.3:37911396-37911415 MS.gene000112:CDS 25.0%
! CCTAAGAAAAAATCTCAAAT+TGG + chr1.3:37911102-37911121 MS.gene000112:CDS 25.0%
! CTATATTTCCACGAAAAATA+AGG - chr1.3:37911027-37911046 None:intergenic 25.0%
! TCATTATGATTCTACTGAAT+GGG + chr1.3:37911467-37911486 MS.gene000112:CDS 25.0%
! TGATAATATTCACCCAAAAT+TGG - chr1.3:37911642-37911661 None:intergenic 25.0%
! TTCCACTTCTTATTGTTAAT+GGG + chr1.3:37911397-37911416 MS.gene000112:CDS 25.0%
!! GGTGAATATTATCATTTTGA+TGG + chr1.3:37911648-37911667 MS.gene000112:CDS 25.0%
!!! CCAATTTGAGATTTTTTCTT+AGG - chr1.3:37911105-37911124 None:intergenic 25.0%
!!! TCTTATTGTTAATGGGTTTT+TGG + chr1.3:37911404-37911423 MS.gene000112:CDS 25.0%
!!! TTCTCTATTTTTCTTTGTGA+TGG - chr1.3:37910658-37910677 None:intergenic 25.0%
AAATTTATGTTTCAGATGCC+GGG + chr1.3:37911298-37911317 MS.gene000112:CDS 30.0%
AACCCATTAACAATAAGAAG+TGG - chr1.3:37911402-37911421 None:intergenic 30.0%
AGAATGATGAACATTTGAAG+AGG + chr1.3:37910674-37910693 MS.gene000112:CDS 30.0%
CAAATTTATGTTTCAGATGC+CGG + chr1.3:37911297-37911316 MS.gene000112:CDS 30.0%
CATTCAGTAGAATCATAATG+AGG - chr1.3:37911468-37911487 None:intergenic 30.0%
CTCATTATGATTCTACTGAA+TGG + chr1.3:37911466-37911485 MS.gene000112:CDS 30.0%
GAATGATGAACATTTGAAGA+GGG + chr1.3:37910675-37910694 MS.gene000112:CDS 30.0%
GATAATTACTAAATGCATGG+TGG - chr1.3:37910954-37910973 None:intergenic 30.0%
TAACATAACTGATACTCATG+TGG + chr1.3:37911554-37911573 MS.gene000112:CDS 30.0%
! AAAGCTGTGAAACCAATTTT+GGG + chr1.3:37911627-37911646 MS.gene000112:CDS 30.0%
! AAAGTAATTTGTGGCTATGT+AGG - chr1.3:37910830-37910849 None:intergenic 30.0%
! AAGGGTATGAAAGTAATTTG+TGG - chr1.3:37910839-37910858 None:intergenic 30.0%
!! GTGAGATTAAAGGTGTTTAT+TGG + chr1.3:37911739-37911758 MS.gene000112:CDS 30.0%
!! TCTATTTTTCTTTGTGATGG+AGG - chr1.3:37910655-37910674 None:intergenic 30.0%
AAATAACCCAATTCAACCCT+TGG - chr1.3:37911365-37911384 None:intergenic 35.0%
AAGGAACGGTTAAAACAATG+TGG - chr1.3:37910754-37910773 None:intergenic 35.0%
AATAACCCAATTCAACCCTT+GGG - chr1.3:37911364-37911383 None:intergenic 35.0%
AATATGAGAGGTTATGTGGA+AGG - chr1.3:37910858-37910877 None:intergenic 35.0%
AATCATAATGAGGCAAAGCA+GGG - chr1.3:37911458-37911477 None:intergenic 35.0%
ACATTGAAGGCTAAGTAAAG+TGG - chr1.3:37911201-37911220 None:intergenic 35.0%
AGTGTAAGAAATCTTCCTAG+TGG - chr1.3:37911153-37911172 None:intergenic 35.0%
ATATGAGAGGTTATGTGGAA+GGG - chr1.3:37910857-37910876 None:intergenic 35.0%
ATGATTCTACTGAATGGGAT+TGG + chr1.3:37911472-37911491 MS.gene000112:CDS 35.0%
CTCCTATTTACAAAGCTATG+TGG + chr1.3:37911673-37911692 MS.gene000112:CDS 35.0%
CTTTCACGATCTGAGTAAAT+GGG - chr1.3:37911273-37911292 None:intergenic 35.0%
GATGAAGGTAGTGAGATTAA+AGG + chr1.3:37911729-37911748 MS.gene000112:CDS 35.0%
GTGTAAGAAATCTTCCTAGT+GGG - chr1.3:37911152-37911171 None:intergenic 35.0%
TATGCCTCATTATCATGCTA+TGG + chr1.3:37911596-37911615 MS.gene000112:CDS 35.0%
TCCACATAACCTCTCATATT+TGG + chr1.3:37910858-37910877 MS.gene000112:CDS 35.0%
TCTTTCACGATCTGAGTAAA+TGG - chr1.3:37911274-37911293 None:intergenic 35.0%
! ACGAAAAATAAGGTACCAAG+AGG - chr1.3:37911017-37911036 None:intergenic 35.0%
! CAAAATTGGTTTCACAGCTT+TGG - chr1.3:37911628-37911647 None:intergenic 35.0%
! CAAAGCTGTGAAACCAATTT+TGG + chr1.3:37911626-37911645 MS.gene000112:CDS 35.0%
! TACTTAGCCTTCAATGTTTC+AGG + chr1.3:37911204-37911223 MS.gene000112:CDS 35.0%
!! CTCCACATAGCTTTGTAAAT+AGG - chr1.3:37911678-37911697 None:intergenic 35.0%
!! TAAGGAGTGTCTTTATGTTG+AGG + chr1.3:37911704-37911723 MS.gene000112:CDS 35.0%
!!! TCTTGGTACCTTATTTTTCG+TGG + chr1.3:37911016-37911035 MS.gene000112:CDS 35.0%
AAATACCTTGACAACCCACT+AGG + chr1.3:37911135-37911154 MS.gene000112:CDS 40.0%
AATTTGTGGCTATGTAGGCA+AGG - chr1.3:37910825-37910844 None:intergenic 40.0%
ACAAAACCACCATTCACTCT+TGG + chr1.3:37910706-37910725 MS.gene000112:CDS 40.0%
ATAACCTCTCATATTTGGCG+TGG + chr1.3:37910863-37910882 MS.gene000112:CDS 40.0%
ATCCAAGGATGCATTCTAAC+CGG + chr1.3:37910901-37910920 MS.gene000112:CDS 40.0%
ATGCATTCTAACCGGACTTT+GGG + chr1.3:37910909-37910928 MS.gene000112:CDS 40.0%
CAAGGATTGATGCTATGGTA+AGG - chr1.3:37910807-37910826 None:intergenic 40.0%
CTGAGTAAATGGGTCCATAT+GGG - chr1.3:37911263-37911282 None:intergenic 40.0%
CTTTATGTTGAGGCTGATGA+AGG + chr1.3:37911714-37911733 MS.gene000112:CDS 40.0%
GAACGGTTAAAACAATGTGG+TGG - chr1.3:37910751-37910770 None:intergenic 40.0%
GAATCATAATGAGGCAAAGC+AGG - chr1.3:37911459-37911478 None:intergenic 40.0%
GCCAAATATGAGAGGTTATG+TGG - chr1.3:37910862-37910881 None:intergenic 40.0%
GCTACTGTGGATAGAGATTA+TGG + chr1.3:37911510-37911529 MS.gene000112:CDS 40.0%
GGTAAGGTCAACAATGACAT+AGG - chr1.3:37910791-37910810 None:intergenic 40.0%
TACTGAATGGGATTGGATGA+GGG + chr1.3:37911479-37911498 MS.gene000112:CDS 40.0%
TCTGAGTAAATGGGTCCATA+TGG - chr1.3:37911264-37911283 None:intergenic 40.0%
TGTTCTTCATTCATGCCTCT+TGG + chr1.3:37910999-37911018 MS.gene000112:CDS 40.0%
TTACAAAGCTATGTGGAGAG+AGG + chr1.3:37911680-37911699 MS.gene000112:CDS 40.0%
TTGACTTCACCAAGAGTGAA+TGG - chr1.3:37910718-37910737 None:intergenic 40.0%
! AGAGGCATGAATGAAGAACA+AGG - chr1.3:37910999-37911018 None:intergenic 40.0%
! GCTTCCATAGCATGATAATG+AGG - chr1.3:37911603-37911622 None:intergenic 40.0%
! TAGCCTTCAATGTTTCAGGT+CGG + chr1.3:37911208-37911227 MS.gene000112:CDS 40.0%
! TCTTTGTGATGGAGGATTAG+AGG - chr1.3:37910647-37910666 None:intergenic 40.0%
!!! GTGAATGGTGGTTTTGTAGT+TGG - chr1.3:37910703-37910722 None:intergenic 40.0%
ACTGAATGGGATTGGATGAG+GGG + chr1.3:37911480-37911499 MS.gene000112:CDS 45.0%
ACTTCACCAAGAGTGAATGG+TGG - chr1.3:37910715-37910734 None:intergenic 45.0%
CAAGAGAACCTGTGTTAGAG+TGG - chr1.3:37911062-37911081 None:intergenic 45.0%
CCAACCAAGAGTGAGTGTTA+TGG - chr1.3:37911178-37911197 None:intergenic 45.0%
CCATAACACTCACTCTTGGT+TGG + chr1.3:37911175-37911194 MS.gene000112:CDS 45.0%
CTACTGAATGGGATTGGATG+AGG + chr1.3:37911478-37911497 MS.gene000112:CDS 45.0%
CTCACCATAACACTCACTCT+TGG + chr1.3:37911171-37911190 MS.gene000112:CDS 45.0%
GATGCATTCTAACCGGACTT+TGG + chr1.3:37910908-37910927 MS.gene000112:CDS 45.0%
GGATTCTCGCAGTTTCTTAC+GGG + chr1.3:37911319-37911338 MS.gene000112:CDS 45.0%
GGGATTCTCGCAGTTTCTTA+CGG + chr1.3:37911318-37911337 MS.gene000112:CDS 45.0%
GGTTAGAATGCATCCTTGGA+TGG - chr1.3:37910902-37910921 None:intergenic 45.0%
GTAAGAAACTGCGAGAATCC+CGG - chr1.3:37911319-37911338 None:intergenic 45.0%
GTAGGCAAGGATTGATGCTA+TGG - chr1.3:37910812-37910831 None:intergenic 45.0%
TCCATATGGGTCGTAATGTG+AGG - chr1.3:37911250-37911269 None:intergenic 45.0%
TCCTTGGATGGCCCAATAAA+CGG - chr1.3:37910890-37910909 None:intergenic 45.0%
TTTGGCCCAAGGGTTGAATT+GGG + chr1.3:37911356-37911375 MS.gene000112:CDS 45.0%
! TTTTGGCCCAAGGGTTGAAT+TGG + chr1.3:37911355-37911374 MS.gene000112:CDS 45.0%
!! ATCTTCCTAGTGGGTTGTCA+AGG - chr1.3:37911143-37911162 None:intergenic 45.0%
ACCCTTGGGCCAAAACAAGA+CGG - chr1.3:37911350-37911369 None:intergenic 50.0%
AGCTATGTGGAGAGAGGCTA+AGG + chr1.3:37911686-37911705 MS.gene000112:CDS 50.0%
AGGTTCTCTTGAACGTGACG+AGG + chr1.3:37911071-37911090 MS.gene000112:CDS 50.0%
ATGTGAGGCGAACCTATCGT+AGG - chr1.3:37911235-37911254 None:intergenic 50.0%
ATTTGGCGTGGCCCGTTTAT+TGG + chr1.3:37910875-37910894 MS.gene000112:CDS 50.0%
CAATGGGTCGACGATCTAGT+TGG + chr1.3:37910973-37910992 MS.gene000112:CDS 50.0%
CCTTGGATGGCCCAATAAAC+GGG - chr1.3:37910889-37910908 None:intergenic 50.0%
GAGAACCTGTGTTAGAGTGG+TGG - chr1.3:37911059-37911078 None:intergenic 50.0%
GCCTCACATTACGACCCATA+TGG + chr1.3:37911246-37911265 MS.gene000112:CDS 50.0%
GTCCGGTTAGAATGCATCCT+TGG - chr1.3:37910906-37910925 None:intergenic 50.0%
GTGTGCAATGACCCAAAGTC+CGG - chr1.3:37910923-37910942 None:intergenic 50.0%
TGGGTCATTGCACACGAATG+TGG + chr1.3:37910928-37910947 MS.gene000112:CDS 50.0%
TGTGAGGCGAACCTATCGTA+GGG - chr1.3:37911234-37911253 None:intergenic 50.0%
TTTGGCGTGGCCCGTTTATT+GGG + chr1.3:37910876-37910895 MS.gene000112:CDS 50.0%
!!! ACCGTCTTGTTTTGGCCCAA+GGG + chr1.3:37911346-37911365 MS.gene000112:CDS 50.0%
!!! CGGGCTTTACCGTCTTGTTT+TGG + chr1.3:37911338-37911357 MS.gene000112:CDS 50.0%
!!! TACCGTCTTGTTTTGGCCCA+AGG + chr1.3:37911345-37911364 MS.gene000112:CDS 50.0%
CCCGTTTATTGGGCCATCCA+AGG + chr1.3:37910886-37910905 MS.gene000112:CDS 55.0%
GGGCCGACCTGAAACATTGA+AGG - chr1.3:37911214-37911233 None:intergenic 55.0%
! CTGTGTTAGAGTGGTGGCGA+CGG - chr1.3:37911053-37911072 None:intergenic 55.0%
! TTTCAGGTCGGCCCTACGAT+AGG + chr1.3:37911220-37911239 MS.gene000112:CDS 55.0%
!! GGATTGGATGAGGGGTGCTT+TGG + chr1.3:37911488-37911507 MS.gene000112:CDS 55.0%
CGGGCCACGCCAAATATGAG+AGG - chr1.3:37910870-37910889 None:intergenic 60.0%
CGTCGCCACCACTCTAACAC+AGG + chr1.3:37911051-37911070 MS.gene000112:CDS 60.0%
!! GAGGGGTGCTTTGGCTACTG+TGG + chr1.3:37911497-37911516 MS.gene000112:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 37910625 37911779 37910625 ID=MS.gene000112
chr1.3 mRNA 37910625 37911779 37910625 ID=MS.gene000112.t1;Parent=MS.gene000112
chr1.3 exon 37910625 37911779 37910625 ID=MS.gene000112.t1.exon1;Parent=MS.gene000112.t1
chr1.3 CDS 37910625 37911779 37910625 ID=cds.MS.gene000112.t1;Parent=MS.gene000112.t1
Gene Sequence

>MS.gene000112

ATGGGAGCAGGTGGTAGAGCCTCTAATCCTCCATCACAAAGAAAAATAGAGAATGATGAACATTTGAAGAGGGTTCCAACTACAAAACCACCATTCACTCTTGGTGAAGTCAAGAAAGCAATTCCACCACATTGTTTTAACCGTTCCTTAATTCGATCATTTTCCTATGTCATTGTTGACCTTACCATAGCATCAATCCTTGCCTACATAGCCACAAATTACTTTCATACCCTTCCACATAACCTCTCATATTTGGCGTGGCCCGTTTATTGGGCCATCCAAGGATGCATTCTAACCGGACTTTGGGTCATTGCACACGAATGTGGCCACCATGCATTTAGTAATTATCAATGGGTCGACGATCTAGTTGGCCTTGTTCTTCATTCATGCCTCTTGGTACCTTATTTTTCGTGGAAATATAGTCACCGTCGCCACCACTCTAACACAGGTTCTCTTGAACGTGACGAGGTTTTTGTTCCTAAGAAAAAATCTCAAATTGGTTGGTATTTTAAATACCTTGACAACCCACTAGGAAGATTTCTTACACTCACCATAACACTCACTCTTGGTTGGCCACTTTACTTAGCCTTCAATGTTTCAGGTCGGCCCTACGATAGGTTCGCCTCACATTACGACCCATATGGACCCATTTACTCAGATCGTGAAAGACTTCAAATTTATGTTTCAGATGCCGGGATTCTCGCAGTTTCTTACGGGCTTTACCGTCTTGTTTTGGCCCAAGGGTTGAATTGGGTTATTTGTGTTTATGGAATTCCACTTCTTATTGTTAATGGGTTTTTGGTTTTGATTACTTACTTGCAACACACTCACCCTGCTTTGCCTCATTATGATTCTACTGAATGGGATTGGATGAGGGGTGCTTTGGCTACTGTGGATAGAGATTATGGAATTCTTAATAAGGTTTTTCATAACATAACTGATACTCATGTGGTTCATCATATGTTTTCAACTATGCCTCATTATCATGCTATGGAAGCTACCAAAGCTGTGAAACCAATTTTGGGTGAATATTATCATTTTGATGGGACTCCTATTTACAAAGCTATGTGGAGAGAGGCTAAGGAGTGTCTTTATGTTGAGGCTGATGAAGGTAGTGAGATTAAAGGTGTTTATTGGTACAAAAATAAACTTTAA
Protein sequence

>MS.gene000112.t1

MGAGGRASNPPSQRKIENDEHLKRVPTTKPPFTLGEVKKAIPPHCFNRSLIRSFSYVIVDLTIASILAYIATNYFHTLPHNLSYLAWPVYWAIQGCILTGLWVIAHECGHHAFSNYQWVDDLVGLVLHSCLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSQIGWYFKYLDNPLGRFLTLTITLTLGWPLYLAFNVSGRPYDRFASHYDPYGPIYSDRERLQIYVSDAGILAVSYGLYRLVLAQGLNWVICVYGIPLLIVNGFLVLITYLQHTHPALPHYDSTEWDWMRGALATVDRDYGILNKVFHNITDTHVVHHMFSTMPHYHAMEATKAVKPILGEYYHFDGTPIYKAMWREAKECLYVEADEGSEIKGVYWYKNKL