Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95615.t1 | XP_013449158.1 | 93.9 | 446 | 25 | 1 | 1 | 444 | 1 | 446 | 2.00E-254 | 887.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95615.t1 | P48621 | 78.9 | 454 | 81 | 4 | 1 | 442 | 1 | 451 | 1.1e-218 | 760.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95615.t1 | A0A072UBF9 | 93.9 | 446 | 25 | 1 | 1 | 444 | 1 | 446 | 1.4e-254 | 887.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034496 | MS.gene95615 | PPI |
| MS.gene017981 | MS.gene95615 | PPI |
| MS.gene072400 | MS.gene95615 | PPI |
| MS.gene04619 | MS.gene95615 | PPI |
| MS.gene37076 | MS.gene95615 | PPI |
| MS.gene95615 | MS.gene000112 | PPI |
| MS.gene52655 | MS.gene95615 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95615.t1 | MTR_7g068780 | 95.516 | 446 | 18 | 1 | 1 | 444 | 1 | 446 | 0.0 | 855 |
| MS.gene95615.t1 | MTR_4g015630 | 75.168 | 447 | 99 | 3 | 1 | 443 | 1 | 439 | 0.0 | 667 |
| MS.gene95615.t1 | MTR_7g068780 | 95.575 | 339 | 13 | 1 | 1 | 337 | 1 | 339 | 0.0 | 641 |
| MS.gene95615.t1 | MTR_5g071170 | 71.795 | 351 | 99 | 0 | 87 | 437 | 35 | 385 | 0.0 | 555 |
| MS.gene95615.t1 | MTR_3g464330 | 68.293 | 369 | 113 | 1 | 73 | 441 | 16 | 380 | 0.0 | 528 |
| MS.gene95615.t1 | MTR_7g093200 | 37.313 | 335 | 189 | 7 | 80 | 396 | 65 | 396 | 1.80e-63 | 211 |
| MS.gene95615.t1 | MTR_1g054035 | 36.012 | 336 | 196 | 6 | 76 | 395 | 13 | 345 | 1.91e-63 | 209 |
| MS.gene95615.t1 | MTR_1g111880 | 34.472 | 322 | 180 | 7 | 90 | 396 | 23 | 328 | 1.36e-53 | 183 |
| MS.gene95615.t1 | MTR_4g130980 | 28.443 | 334 | 223 | 8 | 69 | 397 | 75 | 397 | 2.92e-32 | 127 |
| MS.gene95615.t1 | MTR_2g460790 | 27.000 | 400 | 262 | 11 | 12 | 397 | 15 | 398 | 6.07e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95615.t1 | AT5G05580 | 69.977 | 443 | 120 | 3 | 1 | 440 | 1 | 433 | 0.0 | 655 |
| MS.gene95615.t1 | AT3G11170 | 69.955 | 446 | 126 | 3 | 1 | 442 | 1 | 442 | 0.0 | 649 |
| MS.gene95615.t1 | AT5G05580 | 70.619 | 388 | 101 | 3 | 1 | 385 | 1 | 378 | 0.0 | 572 |
| MS.gene95615.t1 | AT2G29980 | 65.600 | 375 | 126 | 1 | 63 | 437 | 4 | 375 | 0.0 | 524 |
| MS.gene95615.t1 | AT2G29980 | 63.636 | 275 | 97 | 1 | 63 | 337 | 4 | 275 | 1.09e-125 | 366 |
| MS.gene95615.t1 | AT3G12120 | 36.527 | 334 | 192 | 8 | 80 | 396 | 15 | 345 | 1.89e-65 | 215 |
| MS.gene95615.t1 | AT3G12120 | 36.527 | 334 | 192 | 8 | 80 | 396 | 15 | 345 | 1.89e-65 | 215 |
| MS.gene95615.t1 | AT4G30950 | 29.226 | 349 | 220 | 11 | 59 | 394 | 61 | 395 | 1.43e-32 | 129 |
Find 100 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATTACTCATGCTTTA+TGG | 0.109554 | 7.4:+34756087 | MS.gene95615:CDS |
| GGATGGTTTGGCCTCTTTAT+TGG | 0.161417 | 7.4:+34754771 | MS.gene95615:CDS |
| CTGCTCAAGGAACTATGTTT+TGG | 0.165280 | 7.4:+34754795 | MS.gene95615:CDS |
| ACAAAACCTGTTCTTGGTTT+TGG | 0.203188 | 7.4:-34754404 | None:intergenic |
| GATGGTTTGGCCTCTTTATT+GGG | 0.236131 | 7.4:+34754772 | MS.gene95615:CDS |
| TTCTTAATAATTGGATGGTT+TGG | 0.246549 | 7.4:+34754759 | MS.gene95615:CDS |
| GGAAGAGGAGCTGATTTCTT+TGG | 0.246608 | 7.4:-34757183 | None:intergenic |
| ACTACTATTGACCGCGATTA+TGG | 0.247284 | 7.4:+34756939 | MS.gene95615:CDS |
| GTTTGGTCCAAGTGAGAAAA+AGG | 0.260081 | 7.4:+34755990 | MS.gene95615:CDS |
| TTTCAACATGGCCATGATTC+TGG | 0.264541 | 7.4:-34755422 | None:intergenic |
| ACCTTATTGGAGAATTTATA+AGG | 0.270680 | 7.4:+34757211 | MS.gene95615:CDS |
| ACCAGTCTTCCCAGGACTTC+TGG | 0.274716 | 7.4:-34755941 | None:intergenic |
| CTTATATCAGCCAATGTAAA+TGG | 0.296570 | 7.4:-34754632 | None:intergenic |
| GACACAACAAAACCTGTTCT+TGG | 0.307873 | 7.4:-34754410 | None:intergenic |
| TCCTTATAAATTCTCCAATA+AGG | 0.310337 | 7.4:-34757212 | None:intergenic |
| AATCATGACCAAGAACAAAA+AGG | 0.317453 | 7.4:-34754820 | None:intergenic |
| AAATTTAGCCTTTGAGTTGT+TGG | 0.324090 | 7.4:-34754432 | None:intergenic |
| CATCCCAGCAGTGACTTGTT+TGG | 0.326413 | 7.4:+34755973 | MS.gene95615:CDS |
| ATGAGAAGTTCAATCTGATT+TGG | 0.327753 | 7.4:-34757313 | None:intergenic |
| TCAATTCTTGTTCCCTATCA+TGG | 0.336107 | 7.4:+34755269 | MS.gene95615:CDS |
| CCTAATCTTAACAGTGTTGT+TGG | 0.371102 | 7.4:+34755230 | MS.gene95615:CDS |
| AGTCACTGCTGGGATGGAAA+TGG | 0.376732 | 7.4:-34755966 | None:intergenic |
| CTTAATCTTCTATGGCAACT+TGG | 0.377115 | 7.4:+34754339 | None:intergenic |
| GCTATGGTGGCATTGCTTGT+AGG | 0.377173 | 7.4:+34756042 | MS.gene95615:CDS |
| CCAACAACACTGTTAAGATT+AGG | 0.378693 | 7.4:-34755230 | None:intergenic |
| TAAAGCATGAGTAATGGAAT+TGG | 0.386548 | 7.4:-34756084 | None:intergenic |
| TGATAACTTCTACTGCTTGT+TGG | 0.390054 | 7.4:+34756016 | MS.gene95615:CDS |
| ATGCAGTGGGCCAGAAGTCC+TGG | 0.395799 | 7.4:+34755931 | MS.gene95615:intron |
| CACTAATTTCAGAATCTGTT+TGG | 0.396613 | 7.4:-34757284 | None:intergenic |
| CATAACATACCATCCATGAT+AGG | 0.399195 | 7.4:-34755282 | None:intergenic |
| TGAATGTGAGTACTCCTTTG+AGG | 0.406114 | 7.4:+34754540 | MS.gene95615:CDS |
| TCTTTCACCCAACAATGCTT+TGG | 0.417306 | 7.4:-34754665 | None:intergenic |
| CAGCAATACCAAAGCATTGT+TGG | 0.422355 | 7.4:+34754657 | MS.gene95615:CDS |
| GTGGCATTGCTTGTAGGATT+GGG | 0.423209 | 7.4:+34756048 | MS.gene95615:CDS |
| CAAACAGATTCTGAAATTAG+TGG | 0.428433 | 7.4:+34757285 | MS.gene95615:CDS |
| GTAGGATTGGGATTTACAAT+TGG | 0.429127 | 7.4:+34756060 | MS.gene95615:CDS |
| ATTGTTGGGTGAAAGATTCA+TGG | 0.438978 | 7.4:+34754672 | MS.gene95615:CDS |
| GAGGCAGCAAGGCCTGTGTT+TGG | 0.442475 | 7.4:+34757144 | MS.gene95615:CDS |
| GAATGTGAGTACTCCTTTGA+GGG | 0.443614 | 7.4:+34754541 | MS.gene95615:CDS |
| TAGGAATGGAGCTATCTTAG+AGG | 0.444853 | 7.4:+34756909 | MS.gene95615:intron |
| TACTGCTTGTTGGACTGCTA+TGG | 0.447734 | 7.4:+34756026 | MS.gene95615:CDS |
| AGGTGATAGTGTGGAATTTG+AGG | 0.461549 | 7.4:-34757017 | None:intergenic |
| GTCACTGCTGGGATGGAAAT+GGG | 0.462406 | 7.4:-34755965 | None:intergenic |
| GGTGGCATTGCTTGTAGGAT+TGG | 0.463654 | 7.4:+34756047 | MS.gene95615:CDS |
| GCCAGAAGTCCTGGGAAGAC+TGG | 0.465518 | 7.4:+34755940 | MS.gene95615:CDS |
| AATTGAACAAGAACATGAAC+AGG | 0.467947 | 7.4:+34754571 | MS.gene95615:CDS |
| ACAAGAACATGAACAGGAAC+AGG | 0.468800 | 7.4:+34754577 | MS.gene95615:CDS |
| TATACAGGAGAATTAGTCAT+AGG | 0.472631 | 7.4:+34755391 | MS.gene95615:intron |
| GTATTTCCAAAACCAAGAAC+AGG | 0.474801 | 7.4:+34754398 | MS.gene95615:CDS |
| CCTCTTTATTGGGCTGCTCA+AGG | 0.476332 | 7.4:+34754782 | MS.gene95615:CDS |
| TGGACCAAACAAGTCACTGC+TGG | 0.478611 | 7.4:-34755977 | None:intergenic |
| GTGACTTACTTGCACCATCA+TGG | 0.478921 | 7.4:+34756245 | MS.gene95615:CDS |
| AATTCTCCAATAAGGTGAAA+AGG | 0.487740 | 7.4:-34757204 | None:intergenic |
| AATAACATTCACCATGACAT+TGG | 0.490823 | 7.4:+34756969 | MS.gene95615:CDS |
| TTAATCTTCTATGGCAACTT+GGG | 0.495943 | 7.4:+34754340 | None:intergenic |
| GAGATGAAACTTACAACATA+CGG | 0.502661 | 7.4:-34756114 | None:intergenic |
| AGCAATACCAAAGCATTGTT+GGG | 0.503948 | 7.4:+34754658 | MS.gene95615:CDS |
| CTATTGACCGCGATTATGGA+TGG | 0.507864 | 7.4:+34756943 | MS.gene95615:CDS |
| GAGTTACCAGAGTTTGATCC+TGG | 0.511019 | 7.4:+34754599 | MS.gene95615:CDS |
| GGTGATAGTGTGGAATTTGA+GGG | 0.516178 | 7.4:-34757016 | None:intergenic |
| GGATATGCAAGCAATGGAAA+AGG | 0.519991 | 7.4:-34755805 | None:intergenic |
| AGGACTCATCACCAGAATCA+TGG | 0.529486 | 7.4:+34755411 | MS.gene95615:CDS |
| AAATGACGAGTCTTGGCATC+CGG | 0.531545 | 7.4:+34755443 | MS.gene95615:CDS |
| GATCATTATGTTAGTGACAC+TGG | 0.532354 | 7.4:+34757246 | MS.gene95615:CDS |
| TTCACCACCACCATTTACAT+TGG | 0.537892 | 7.4:+34754622 | MS.gene95615:CDS |
| CCTTGAGCAGCCCAATAAAG+AGG | 0.538687 | 7.4:-34754782 | None:intergenic |
| TTCTTGTTCCCTATCATGGA+TGG | 0.540256 | 7.4:+34755273 | MS.gene95615:CDS |
| GACAAATTACCTTGGTATCG+TGG | 0.541472 | 7.4:+34756275 | MS.gene95615:CDS |
| ATGTTGAAAATGACGAGTCT+TGG | 0.543891 | 7.4:+34755436 | MS.gene95615:CDS |
| CCAATAAGGTGAAAAGGAAG+AGG | 0.544622 | 7.4:-34757198 | None:intergenic |
| AAATGGGAACCAGTCTTCCC+AGG | 0.559704 | 7.4:-34755949 | None:intergenic |
| TCAATTGAATCAACCCTCAA+AGG | 0.560368 | 7.4:-34754554 | None:intergenic |
| ACTCCATAAAGCATGAGTAA+TGG | 0.560961 | 7.4:-34756090 | None:intergenic |
| CAAACAAGTCACTGCTGGGA+TGG | 0.566530 | 7.4:-34755972 | None:intergenic |
| GGACCAAACAAGTCACTGCT+GGG | 0.570996 | 7.4:-34755976 | None:intergenic |
| GTAAATGGTGGTGGTGAACC+AGG | 0.571749 | 7.4:-34754617 | None:intergenic |
| TTTAAGGAGAAGAGAAAATG+GGG | 0.572531 | 7.4:+34754515 | MS.gene95615:CDS |
| GTTTGCAGACTGAGGCAGCA+AGG | 0.573397 | 7.4:+34757133 | MS.gene95615:intron |
| TGCTTGTTGGACTGCTATGG+TGG | 0.574412 | 7.4:+34756029 | MS.gene95615:CDS |
| TTTGGAAATACTGGAGCAAG+TGG | 0.574925 | 7.4:-34754386 | None:intergenic |
| TGCAGTGGGCCAGAAGTCCT+GGG | 0.574948 | 7.4:+34755932 | MS.gene95615:intron |
| TGTTGTGTCCAACAACTCAA+AGG | 0.576710 | 7.4:+34754424 | MS.gene95615:CDS |
| TACACAGGATATGCAAGCAA+TGG | 0.581321 | 7.4:-34755811 | None:intergenic |
| AGATACTCACAGCTTCAACT+AGG | 0.590574 | 7.4:-34757037 | None:intergenic |
| TTGTAATATTCTCCAAACAC+AGG | 0.600552 | 7.4:-34757156 | None:intergenic |
| ATAACATACCATCCATGATA+GGG | 0.602383 | 7.4:-34755281 | None:intergenic |
| GAATGGAGCTATCTTAGAGG+TGG | 0.607399 | 7.4:+34756912 | MS.gene95615:CDS |
| ATTACCTTGGTATCGTGGAA+AGG | 0.611215 | 7.4:+34756280 | MS.gene95615:CDS |
| GTCATGAAGACAAATTACCT+TGG | 0.612404 | 7.4:+34756267 | MS.gene95615:CDS |
| GGTGAACCAGGATCAAACTC+TGG | 0.614380 | 7.4:-34754605 | None:intergenic |
| GCTTCAACTAGGTGATAGTG+TGG | 0.622119 | 7.4:-34757026 | None:intergenic |
| AGTGTGGAATTTGAGGGAAA+AGG | 0.622362 | 7.4:-34757010 | None:intergenic |
| CGACATGAGTTCCAATGTCA+TGG | 0.632856 | 7.4:-34756980 | None:intergenic |
| TCAGCCAATGTAAATGGTGG+TGG | 0.634606 | 7.4:-34754626 | None:intergenic |
| AAATAACTTACAAGGTACAC+AGG | 0.642457 | 7.4:-34755826 | None:intergenic |
| ATTTGTCTTCATGACCATGA+TGG | 0.654713 | 7.4:-34756259 | None:intergenic |
| GTGGAATTTGAGGGAAAAGG+TGG | 0.661875 | 7.4:-34757007 | None:intergenic |
| AGTACCTTTCCACGATACCA+AGG | 0.662444 | 7.4:-34756284 | None:intergenic |
| ATATCAGCCAATGTAAATGG+TGG | 0.666664 | 7.4:-34754629 | None:intergenic |
| TATTAATCCATCCATAATCG+CGG | 0.702360 | 7.4:-34756950 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATATGTAAACTAAAAT+CGG | - | chr7.4:34756874-34756893 | None:intergenic | 10.0% |
| !! | ATTTGAATATTAATTAGTTC+TGG | + | chr7.4:34755874-34755893 | MS.gene95615:intron | 15.0% |
| !!! | ACATTTGTATTAGAATTTTA+AGG | - | chr7.4:34755708-34755727 | None:intergenic | 15.0% |
| !!! | TACTTTTAATTTTTTTGCTA+TGG | + | chr7.4:34755079-34755098 | MS.gene95615:intron | 15.0% |
| !! | AAATTCTAGTCAAAATTTGT+AGG | - | chr7.4:34755858-34755877 | None:intergenic | 20.0% |
| !! | AGAAAAAATATTTAAGAGCT+TGG | + | chr7.4:34755750-34755769 | MS.gene95615:CDS | 20.0% |
| !! | AGTATTCTTAAATGAGAAAA+TGG | - | chr7.4:34755669-34755688 | None:intergenic | 20.0% |
| !! | TTCAATCAAATATCAGATAT+TGG | + | chr7.4:34756350-34756369 | MS.gene95615:intron | 20.0% |
| !! | TTGTAAACGCAATTTAAAAA+AGG | + | chr7.4:34755589-34755608 | MS.gene95615:intron | 20.0% |
| !!! | ACCAAAAAGTTTTGATTTTA+AGG | + | chr7.4:34754499-34754518 | MS.gene95615:CDS | 20.0% |
| !!! | TCCTTAAAATCAAAACTTTT+TGG | - | chr7.4:34754503-34754522 | None:intergenic | 20.0% |
| !!! | TTAATCTTTATCTGTTGATT+AGG | + | chr7.4:34756890-34756909 | MS.gene95615:intron | 20.0% |
| !!! | TTTGATTTTGATTGTTGTTT+TGG | + | chr7.4:34755147-34755166 | MS.gene95615:intron | 20.0% |
| ! | ACCTTATTGGAGAATTTATA+AGG | + | chr7.4:34757211-34757230 | MS.gene95615:CDS | 25.0% |
| ! | TATGTTTACCTTGATTATAC+AGG | + | chr7.4:34755376-34755395 | MS.gene95615:intron | 25.0% |
| ! | TATTGGATCAATGTACAATT+GGG | - | chr7.4:34756378-34756397 | None:intergenic | 25.0% |
| ! | TCCTTATAAATTCTCCAATA+AGG | - | chr7.4:34757215-34757234 | None:intergenic | 25.0% |
| ! | TTATTGGATCAATGTACAAT+TGG | - | chr7.4:34756379-34756398 | None:intergenic | 25.0% |
| ! | TTCTTAATAATTGGATGGTT+TGG | + | chr7.4:34754759-34754778 | MS.gene95615:CDS | 25.0% |
| ! | TTGTCGATAGTAGAAAATAA+CGG | + | chr7.4:34754909-34754928 | MS.gene95615:intron | 25.0% |
| !! | AACTCAAAGGCTAAATTTTT+AGG | + | chr7.4:34754437-34754456 | MS.gene95615:CDS | 25.0% |
| !! | ATTTAGAGCAAAGTCAAATT+AGG | - | chr7.4:34756196-34756215 | None:intergenic | 25.0% |
| !! | TGCTTTTCTTAATAATTGGA+TGG | + | chr7.4:34754754-34754773 | MS.gene95615:CDS | 25.0% |
| !! | TTCTAATTTTCATTAGACGT+CGG | + | chr7.4:34755619-34755638 | MS.gene95615:intron | 25.0% |
| !! | TTTTCATTGATCAATTAGCA+TGG | + | chr7.4:34756138-34756157 | MS.gene95615:intron | 25.0% |
| !!! | AGAGATGTTGTTATTGTTTT+TGG | + | chr7.4:34754716-34754735 | MS.gene95615:CDS | 25.0% |
| !!! | ATATTAATTAGTTCTGGTAG+AGG | + | chr7.4:34755880-34755899 | MS.gene95615:intron | 25.0% |
| !!! | ATTAGCATGGTTTTAGTTTT+TGG | + | chr7.4:34756151-34756170 | MS.gene95615:intron | 25.0% |
| !!! | ATTTTAAGGAGAAGAGAAAA+TGG | + | chr7.4:34754513-34754532 | MS.gene95615:CDS | 25.0% |
| !!! | TGTTGTTATTGTTTTTGGTT+TGG | + | chr7.4:34754721-34754740 | MS.gene95615:CDS | 25.0% |
| !!! | TTTTAAGGAGAAGAGAAAAT+GGG | + | chr7.4:34754514-34754533 | MS.gene95615:CDS | 25.0% |
| AAATAACTTACAAGGTACAC+AGG | - | chr7.4:34755829-34755848 | None:intergenic | 30.0% | |
| AATAACATTCACCATGACAT+TGG | + | chr7.4:34756969-34756988 | MS.gene95615:CDS | 30.0% | |
| AATCATGACCAAGAACAAAA+AGG | - | chr7.4:34754823-34754842 | None:intergenic | 30.0% | |
| AATTCTCCAATAAGGTGAAA+AGG | - | chr7.4:34757207-34757226 | None:intergenic | 30.0% | |
| AATTGAACAAGAACATGAAC+AGG | + | chr7.4:34754571-34754590 | MS.gene95615:CDS | 30.0% | |
| ATAACATACCATCCATGATA+GGG | - | chr7.4:34755284-34755303 | None:intergenic | 30.0% | |
| ATCAATCAAATTTCGATCGT+TGG | + | chr7.4:34756459-34756478 | MS.gene95615:intron | 30.0% | |
| ATCATGACCAAGAACAAAAA+GGG | - | chr7.4:34754822-34754841 | None:intergenic | 30.0% | |
| ATTCCATTACTCATGCTTTA+TGG | + | chr7.4:34756087-34756106 | MS.gene95615:CDS | 30.0% | |
| CACTAATTTCAGAATCTGTT+TGG | - | chr7.4:34757287-34757306 | None:intergenic | 30.0% | |
| CTAATTCTCCTGTATAATCA+AGG | - | chr7.4:34755387-34755406 | None:intergenic | 30.0% | |
| CTCTATCTTAGTTGAAACAA+TGG | + | chr7.4:34757058-34757077 | MS.gene95615:intron | 30.0% | |
| CTTATATCAGCCAATGTAAA+TGG | - | chr7.4:34754635-34754654 | None:intergenic | 30.0% | |
| GAGATGAAACTTACAACATA+CGG | - | chr7.4:34756117-34756136 | None:intergenic | 30.0% | |
| GGCACAATAAATAACTTACA+AGG | - | chr7.4:34755837-34755856 | None:intergenic | 30.0% | |
| TATACAGGAGAATTAGTCAT+AGG | + | chr7.4:34755391-34755410 | MS.gene95615:intron | 30.0% | |
| TATTAATCCATCCATAATCG+CGG | - | chr7.4:34756953-34756972 | None:intergenic | 30.0% | |
| TTAATCCAACAGACGAAATA+TGG | + | chr7.4:34756802-34756821 | MS.gene95615:intron | 30.0% | |
| TTGTAATATTCTCCAAACAC+AGG | - | chr7.4:34757159-34757178 | None:intergenic | 30.0% | |
| TTTAAGGAGAAGAGAAAATG+GGG | + | chr7.4:34754515-34754534 | MS.gene95615:CDS | 30.0% | |
| ! | AATTGAAGGTTTTTGTGATG+TGG | + | chr7.4:34756213-34756232 | MS.gene95615:intron | 30.0% |
| ! | CTTTATCTGTTGATTAGGAA+TGG | + | chr7.4:34756895-34756914 | MS.gene95615:intron | 30.0% |
| ! | TAAAGCATGAGTAATGGAAT+TGG | - | chr7.4:34756087-34756106 | None:intergenic | 30.0% |
| ! | TTGACTTTGCTCTAAATTGA+AGG | + | chr7.4:34756199-34756218 | MS.gene95615:intron | 30.0% |
| ! | TTTTTGTTCTTGGTCATGAT+TGG | + | chr7.4:34754822-34754841 | MS.gene95615:CDS | 30.0% |
| !! | AAATTTAGCCTTTGAGTTGT+TGG | - | chr7.4:34754435-34754454 | None:intergenic | 30.0% |
| !! | CAAACAGATTCTGAAATTAG+TGG | + | chr7.4:34757285-34757304 | MS.gene95615:CDS | 30.0% |
| !! | TTTTGCTATGGTTGACTTTT+GGG | + | chr7.4:34755091-34755110 | MS.gene95615:intron | 30.0% |
| !! | TTTTTGCTATGGTTGACTTT+TGG | + | chr7.4:34755090-34755109 | MS.gene95615:intron | 30.0% |
| !!! | AGTGATTTGTTTTTAGAGTC+AGG | + | chr7.4:34757088-34757107 | MS.gene95615:intron | 30.0% |
| !!! | CTGCTGCTTTTCTTAATAAT+TGG | + | chr7.4:34754750-34754769 | MS.gene95615:CDS | 30.0% |
| !!! | TGTTGTTTTGGAATTTTCAG+TGG | + | chr7.4:34755185-34755204 | MS.gene95615:intron | 30.0% |
| !!! | TTTTTGGTTTGTAGATGTGT+CGG | + | chr7.4:34756436-34756455 | MS.gene95615:intron | 30.0% |
| !!! | TTTTTGGTTTGTAGATGTGT+TGG | + | chr7.4:34756436-34756455 | MS.gene95615:intron | 30.0% |
| ACAGTCAAGATTTGACTGAA+TGG | - | chr7.4:34756656-34756675 | None:intergenic | 35.0% | |
| ACTCCATAAAGCATGAGTAA+TGG | - | chr7.4:34756093-34756112 | None:intergenic | 35.0% | |
| AGAGAATGTTATCTTCTCAC+CGG | - | chr7.4:34755465-34755484 | None:intergenic | 35.0% | |
| ATATCAGCCAATGTAAATGG+TGG | - | chr7.4:34754632-34754651 | None:intergenic | 35.0% | |
| ATGTTGAAAATGACGAGTCT+TGG | + | chr7.4:34755436-34755455 | MS.gene95615:CDS | 35.0% | |
| ATTGTTGGGTGAAAGATTCA+TGG | + | chr7.4:34754672-34754691 | MS.gene95615:CDS | 35.0% | |
| ATTTGTCTTCATGACCATGA+TGG | - | chr7.4:34756262-34756281 | None:intergenic | 35.0% | |
| CAAACCAAAAAACACATTGG+TGG | - | chr7.4:34756632-34756651 | None:intergenic | 35.0% | |
| CAAATCTTGACTGTTTGATG+AGG | + | chr7.4:34756662-34756681 | MS.gene95615:intron | 35.0% | |
| CAGTCGAAACTTTGACTAAA+TGG | - | chr7.4:34756764-34756783 | None:intergenic | 35.0% | |
| CAGTGCAGTAAAGTCATATT+TGG | - | chr7.4:34756688-34756707 | None:intergenic | 35.0% | |
| CATAACATACCATCCATGAT+AGG | - | chr7.4:34755285-34755304 | None:intergenic | 35.0% | |
| CCAACAACACTGTTAAGATT+AGG | - | chr7.4:34755233-34755252 | None:intergenic | 35.0% | |
| CCTAATCTTAACAGTGTTGT+TGG | + | chr7.4:34755230-34755249 | MS.gene95615:CDS | 35.0% | |
| CTAGTCTGTACAGTCATATT+TGG | - | chr7.4:34756608-34756627 | None:intergenic | 35.0% | |
| GATCATTATGTTAGTGACAC+TGG | + | chr7.4:34757246-34757265 | MS.gene95615:CDS | 35.0% | |
| GGACAAACCAAAAAACACAT+TGG | - | chr7.4:34756635-34756654 | None:intergenic | 35.0% | |
| GTAGGATTGGGATTTACAAT+TGG | + | chr7.4:34756060-34756079 | MS.gene95615:CDS | 35.0% | |
| GTATTTCCAAAACCAAGAAC+AGG | + | chr7.4:34754398-34754417 | MS.gene95615:CDS | 35.0% | |
| GTCATGAAGACAAATTACCT+TGG | + | chr7.4:34756267-34756286 | MS.gene95615:CDS | 35.0% | |
| GTTTACAAAGTACGCTTATG+TGG | - | chr7.4:34755577-34755596 | None:intergenic | 35.0% | |
| TACAGTCATATTTGGCCTAT+CGG | - | chr7.4:34756600-34756619 | None:intergenic | 35.0% | |
| TCAATTCTTGTTCCCTATCA+TGG | + | chr7.4:34755269-34755288 | MS.gene95615:CDS | 35.0% | |
| TCAATTGAATCAACCCTCAA+AGG | - | chr7.4:34754557-34754576 | None:intergenic | 35.0% | |
| TGATAACTTCTACTGCTTGT+TGG | + | chr7.4:34756016-34756035 | MS.gene95615:CDS | 35.0% | |
| TGTTGTTCTTTGAATGCAGT+GGG | + | chr7.4:34755918-34755937 | MS.gene95615:intron | 35.0% | |
| TTAGTCAAAGTTTCGACTGT+TGG | + | chr7.4:34756765-34756784 | MS.gene95615:intron | 35.0% | |
| TTGATCCAATAAGCGAGATA+TGG | + | chr7.4:34756387-34756406 | MS.gene95615:intron | 35.0% | |
| ! | ACAAAACCTGTTCTTGGTTT+TGG | - | chr7.4:34754407-34754426 | None:intergenic | 35.0% |
| ! | ATCACATCCTTTTTCTCACT+TGG | - | chr7.4:34756000-34756019 | None:intergenic | 35.0% |
| ! | TGCTCAAGGAACTATGTTTT+GGG | + | chr7.4:34754796-34754815 | MS.gene95615:CDS | 35.0% |
| ! | TTGTTCAAATTTTGCTACGC+AGG | + | chr7.4:34754933-34754952 | MS.gene95615:intron | 35.0% |
| ! | TTGTTGTTCTTTGAATGCAG+TGG | + | chr7.4:34755917-34755936 | MS.gene95615:intron | 35.0% |
| ! | TTTTGTGATGTGGTTGGATT+TGG | + | chr7.4:34756223-34756242 | MS.gene95615:CDS | 35.0% |
| !! | AAGACTCGTCATTTTCAACA+TGG | - | chr7.4:34755437-34755456 | None:intergenic | 35.0% |
| !! | ACTTGGGTTTTATCAGAATG+TGG | + | chr7.4:34754356-34754375 | MS.gene95615:CDS | 35.0% |
| !! | AGCAATACCAAAGCATTGTT+GGG | + | chr7.4:34754658-34754677 | MS.gene95615:CDS | 35.0% |
| !! | TTTGGAATTTTCAGTGGTCA+TGG | + | chr7.4:34755191-34755210 | MS.gene95615:intron | 35.0% |
| !!! | GACTTTTGGGTTGTAGAATT+TGG | + | chr7.4:34755104-34755123 | MS.gene95615:intron | 35.0% |
| !!! | GTTCTTGGTTTTGGAAATAC+TGG | - | chr7.4:34754398-34754417 | None:intergenic | 35.0% |
| !!! | TAGACCACCAATGTGTTTTT+TGG | + | chr7.4:34756625-34756644 | MS.gene95615:intron | 35.0% |
| AAAAGACTGTACTGCTACAG+AGG | - | chr7.4:34756331-34756350 | None:intergenic | 40.0% | |
| ACAAGAACATGAACAGGAAC+AGG | + | chr7.4:34754577-34754596 | MS.gene95615:CDS | 40.0% | |
| ACTACTATTGACCGCGATTA+TGG | + | chr7.4:34756939-34756958 | MS.gene95615:CDS | 40.0% | |
| AGATACTCACAGCTTCAACT+AGG | - | chr7.4:34757040-34757059 | None:intergenic | 40.0% | |
| AGTGTGGAATTTGAGGGAAA+AGG | - | chr7.4:34757013-34757032 | None:intergenic | 40.0% | |
| ATATTTGGCCTATCGGATCA+AGG | - | chr7.4:34756593-34756612 | None:intergenic | 40.0% | |
| ATGACTTTACTGCACTGAGA+CGG | + | chr7.4:34756691-34756710 | MS.gene95615:intron | 40.0% | |
| ATGAGAAAATGGCACATGCA+CGG | - | chr7.4:34755658-34755677 | None:intergenic | 40.0% | |
| ATTACCTTGGTATCGTGGAA+AGG | + | chr7.4:34756280-34756299 | MS.gene95615:CDS | 40.0% | |
| CAATTGTACCTTGATCCGAT+AGG | + | chr7.4:34756486-34756505 | MS.gene95615:intron | 40.0% | |
| CCAATAAGGTGAAAAGGAAG+AGG | - | chr7.4:34757201-34757220 | None:intergenic | 40.0% | |
| CGAGATATGGCTACATTGAT+CGG | + | chr7.4:34756400-34756419 | MS.gene95615:intron | 40.0% | |
| GAATGTGAGTACTCCTTTGA+GGG | + | chr7.4:34754541-34754560 | MS.gene95615:CDS | 40.0% | |
| GACAAATTACCTTGGTATCG+TGG | + | chr7.4:34756275-34756294 | MS.gene95615:CDS | 40.0% | |
| GACACAACAAAACCTGTTCT+TGG | - | chr7.4:34754413-34754432 | None:intergenic | 40.0% | |
| GGATATGCAAGCAATGGAAA+AGG | - | chr7.4:34755808-34755827 | None:intergenic | 40.0% | |
| GTTTGGTCCAAGTGAGAAAA+AGG | + | chr7.4:34755990-34756009 | MS.gene95615:CDS | 40.0% | |
| TACACAGGATATGCAAGCAA+TGG | - | chr7.4:34755814-34755833 | None:intergenic | 40.0% | |
| TAGGAATGGAGCTATCTTAG+AGG | + | chr7.4:34756909-34756928 | MS.gene95615:intron | 40.0% | |
| TCTTTCACCCAACAATGCTT+TGG | - | chr7.4:34754668-34754687 | None:intergenic | 40.0% | |
| TGAATGTGAGTACTCCTTTG+AGG | + | chr7.4:34754540-34754559 | MS.gene95615:CDS | 40.0% | |
| TGTAGCCATATCTCGCTTAT+TGG | - | chr7.4:34756395-34756414 | None:intergenic | 40.0% | |
| TGTTGTGTCCAACAACTCAA+AGG | + | chr7.4:34754424-34754443 | MS.gene95615:CDS | 40.0% | |
| TTCACCACCACCATTTACAT+TGG | + | chr7.4:34754622-34754641 | MS.gene95615:CDS | 40.0% | |
| TTCTTGTTCCCTATCATGGA+TGG | + | chr7.4:34755273-34755292 | MS.gene95615:CDS | 40.0% | |
| TTTCAACATGGCCATGATTC+TGG | - | chr7.4:34755425-34755444 | None:intergenic | 40.0% | |
| TTTGGAAATACTGGAGCAAG+TGG | - | chr7.4:34754389-34754408 | None:intergenic | 40.0% | |
| ! | AGGTGATAGTGTGGAATTTG+AGG | - | chr7.4:34757020-34757039 | None:intergenic | 40.0% |
| ! | CCTCTTCCTTTTCACCTTAT+TGG | + | chr7.4:34757198-34757217 | MS.gene95615:CDS | 40.0% |
| ! | CTGCTCAAGGAACTATGTTT+TGG | + | chr7.4:34754795-34754814 | MS.gene95615:CDS | 40.0% |
| ! | GAAGGTTTTTGTGATGTGGT+TGG | + | chr7.4:34756217-34756236 | MS.gene95615:intron | 40.0% |
| ! | GATGGTTTGGCCTCTTTATT+GGG | + | chr7.4:34754772-34754791 | MS.gene95615:CDS | 40.0% |
| ! | GGTGATAGTGTGGAATTTGA+GGG | - | chr7.4:34757019-34757038 | None:intergenic | 40.0% |
| ! | TTTTGGGCCCTTTTTGTTCT+TGG | + | chr7.4:34754812-34754831 | MS.gene95615:CDS | 40.0% |
| !! | CAGCAATACCAAAGCATTGT+TGG | + | chr7.4:34754657-34754676 | MS.gene95615:CDS | 40.0% |
| !! | TTGATCCGATAGGCATTGAT+CGG | + | chr7.4:34756496-34756515 | MS.gene95615:intron | 40.0% |
| !! | TTTGCTTTGTTTGCAGACTG+AGG | + | chr7.4:34757125-34757144 | MS.gene95615:intron | 40.0% |
| AAATGACGAGTCTTGGCATC+CGG | + | chr7.4:34755443-34755462 | MS.gene95615:CDS | 45.0% | |
| AGGACTCATCACCAGAATCA+TGG | + | chr7.4:34755411-34755430 | MS.gene95615:CDS | 45.0% | |
| AGTACCTTTCCACGATACCA+AGG | - | chr7.4:34756287-34756306 | None:intergenic | 45.0% | |
| CGACATGAGTTCCAATGTCA+TGG | - | chr7.4:34756983-34757002 | None:intergenic | 45.0% | |
| CTATTGACCGCGATTATGGA+TGG | + | chr7.4:34756943-34756962 | MS.gene95615:CDS | 45.0% | |
| GAATGGAGCTATCTTAGAGG+TGG | + | chr7.4:34756912-34756931 | MS.gene95615:CDS | 45.0% | |
| GAGTTACCAGAGTTTGATCC+TGG | + | chr7.4:34754599-34754618 | MS.gene95615:CDS | 45.0% | |
| GATCAATGCCTATCGGATCA+AGG | - | chr7.4:34756497-34756516 | None:intergenic | 45.0% | |
| GTCATCCGATCAATGCCTAT+CGG | - | chr7.4:34756504-34756523 | None:intergenic | 45.0% | |
| GTGACTTACTTGCACCATCA+TGG | + | chr7.4:34756245-34756264 | MS.gene95615:CDS | 45.0% | |
| GTGGAATTTGAGGGAAAAGG+TGG | - | chr7.4:34757010-34757029 | None:intergenic | 45.0% | |
| GTGGCATTGCTTGTAGGATT+GGG | + | chr7.4:34756048-34756067 | MS.gene95615:CDS | 45.0% | |
| TCAGCCAATGTAAATGGTGG+TGG | - | chr7.4:34754629-34754648 | None:intergenic | 45.0% | |
| TGACTTTACTGCACTGAGAC+GGG | + | chr7.4:34756692-34756711 | MS.gene95615:intron | 45.0% | |
| ! | GCTTCAACTAGGTGATAGTG+TGG | - | chr7.4:34757029-34757048 | None:intergenic | 45.0% |
| ! | GGAAGAGGAGCTGATTTCTT+TGG | - | chr7.4:34757186-34757205 | None:intergenic | 45.0% |
| ! | GGATGGTTTGGCCTCTTTAT+TGG | + | chr7.4:34754771-34754790 | MS.gene95615:CDS | 45.0% |
| ! | TACTGCTTGTTGGACTGCTA+TGG | + | chr7.4:34756026-34756045 | MS.gene95615:CDS | 45.0% |
| !!! | CGGATGACTGCTAGTCTTTT+TGG | + | chr7.4:34756420-34756439 | MS.gene95615:intron | 45.0% |
| AAATGGGAACCAGTCTTCCC+AGG | - | chr7.4:34755952-34755971 | None:intergenic | 50.0% | |
| AGTCACTGCTGGGATGGAAA+TGG | - | chr7.4:34755969-34755988 | None:intergenic | 50.0% | |
| CAAACAAGTCACTGCTGGGA+TGG | - | chr7.4:34755975-34755994 | None:intergenic | 50.0% | |
| CAGACGAAATATGGCCGCAT+TGG | + | chr7.4:34756811-34756830 | MS.gene95615:intron | 50.0% | |
| CCTCTTTATTGGGCTGCTCA+AGG | + | chr7.4:34754782-34754801 | MS.gene95615:CDS | 50.0% | |
| CCTTGAGCAGCCCAATAAAG+AGG | - | chr7.4:34754785-34754804 | None:intergenic | 50.0% | |
| GCTATGGTGGCATTGCTTGT+AGG | + | chr7.4:34756042-34756061 | MS.gene95615:CDS | 50.0% | |
| GGACCAAACAAGTCACTGCT+GGG | - | chr7.4:34755979-34755998 | None:intergenic | 50.0% | |
| GGTGAACCAGGATCAAACTC+TGG | - | chr7.4:34754608-34754627 | None:intergenic | 50.0% | |
| GGTGGCATTGCTTGTAGGAT+TGG | + | chr7.4:34756047-34756066 | MS.gene95615:CDS | 50.0% | |
| GTCACTGCTGGGATGGAAAT+GGG | - | chr7.4:34755968-34755987 | None:intergenic | 50.0% | |
| TGCGGCCATATTTCGTCTGT+TGG | - | chr7.4:34756810-34756829 | None:intergenic | 50.0% | |
| TGGACCAAACAAGTCACTGC+TGG | - | chr7.4:34755980-34755999 | None:intergenic | 50.0% | |
| TTGCAGCCATCCAACCAATG+CGG | - | chr7.4:34756828-34756847 | None:intergenic | 50.0% | |
| ! | CGAAATATGGCCGCATTGGT+TGG | + | chr7.4:34756815-34756834 | MS.gene95615:intron | 50.0% |
| ! | TGCTTGTTGGACTGCTATGG+TGG | + | chr7.4:34756029-34756048 | MS.gene95615:CDS | 50.0% |
| !! | ATATGGCCGCATTGGTTGGA+TGG | + | chr7.4:34756819-34756838 | MS.gene95615:intron | 50.0% |
| !! | CATCCCAGCAGTGACTTGTT+TGG | + | chr7.4:34755973-34755992 | MS.gene95615:CDS | 50.0% |
| !! | GTAAATGGTGGTGGTGAACC+AGG | - | chr7.4:34754620-34754639 | None:intergenic | 50.0% |
| ACCAGTCTTCCCAGGACTTC+TGG | - | chr7.4:34755944-34755963 | None:intergenic | 55.0% | |
| GTTTGCAGACTGAGGCAGCA+AGG | + | chr7.4:34757133-34757152 | MS.gene95615:intron | 55.0% | |
| ATGCAGTGGGCCAGAAGTCC+TGG | + | chr7.4:34755931-34755950 | MS.gene95615:intron | 60.0% | |
| GAGGCAGCAAGGCCTGTGTT+TGG | + | chr7.4:34757144-34757163 | MS.gene95615:CDS | 60.0% | |
| GCCAGAAGTCCTGGGAAGAC+TGG | + | chr7.4:34755940-34755959 | MS.gene95615:CDS | 60.0% | |
| TGCAGTGGGCCAGAAGTCCT+GGG | + | chr7.4:34755932-34755951 | MS.gene95615:intron | 60.0% | |
| ! | CTGAGACGGGCATCGCTAAC+TGG | + | chr7.4:34756705-34756724 | MS.gene95615:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 34754350 | 34757326 | 34754350 | ID=MS.gene95615 |
| chr7.4 | mRNA | 34754350 | 34757326 | 34754350 | ID=MS.gene95615.t1;Parent=MS.gene95615 |
| chr7.4 | exon | 34754350 | 34754843 | 34754350 | ID=MS.gene95615.t1.exon1;Parent=MS.gene95615.t1 |
| chr7.4 | CDS | 34754350 | 34754843 | 34754350 | ID=cds.MS.gene95615.t1;Parent=MS.gene95615.t1 |
| chr7.4 | exon | 34755205 | 34755294 | 34755205 | ID=MS.gene95615.t1.exon2;Parent=MS.gene95615.t1 |
| chr7.4 | CDS | 34755205 | 34755294 | 34755205 | ID=cds.MS.gene95615.t1;Parent=MS.gene95615.t1 |
| chr7.4 | exon | 34755398 | 34755464 | 34755398 | ID=MS.gene95615.t1.exon3;Parent=MS.gene95615.t1 |
| chr7.4 | CDS | 34755398 | 34755464 | 34755398 | ID=cds.MS.gene95615.t1;Parent=MS.gene95615.t1 |
| chr7.4 | exon | 34755745 | 34755837 | 34755745 | ID=MS.gene95615.t1.exon4;Parent=MS.gene95615.t1 |
| chr7.4 | CDS | 34755745 | 34755837 | 34755745 | ID=cds.MS.gene95615.t1;Parent=MS.gene95615.t1 |
| chr7.4 | exon | 34755937 | 34756122 | 34755937 | ID=MS.gene95615.t1.exon5;Parent=MS.gene95615.t1 |
| chr7.4 | CDS | 34755937 | 34756122 | 34755937 | ID=cds.MS.gene95615.t1;Parent=MS.gene95615.t1 |
| chr7.4 | exon | 34756221 | 34756301 | 34756221 | ID=MS.gene95615.t1.exon6;Parent=MS.gene95615.t1 |
| chr7.4 | CDS | 34756221 | 34756301 | 34756221 | ID=cds.MS.gene95615.t1;Parent=MS.gene95615.t1 |
| chr7.4 | exon | 34756912 | 34757049 | 34756912 | ID=MS.gene95615.t1.exon7;Parent=MS.gene95615.t1 |
| chr7.4 | CDS | 34756912 | 34757049 | 34756912 | ID=cds.MS.gene95615.t1;Parent=MS.gene95615.t1 |
| chr7.4 | exon | 34757141 | 34757326 | 34757141 | ID=MS.gene95615.t1.exon8;Parent=MS.gene95615.t1 |
| chr7.4 | CDS | 34757141 | 34757326 | 34757141 | ID=cds.MS.gene95615.t1;Parent=MS.gene95615.t1 |
| Gene Sequence |
| Protein sequence |
