Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84178.t1 | XP_013449158.1 | 95.5 | 446 | 18 | 1 | 1 | 444 | 1 | 446 | 2.60E-254 | 887.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84178.t1 | P48621 | 78.5 | 456 | 83 | 4 | 1 | 444 | 1 | 453 | 1.5e-218 | 760.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84178.t1 | A0A072UBF9 | 95.5 | 446 | 18 | 1 | 1 | 444 | 1 | 446 | 1.9e-254 | 887.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene84178 | MS.gene000112 | PPI |
| MS.gene84178 | MS.gene072400 | PPI |
| MS.gene84178 | MS.gene37076 | PPI |
| MS.gene84178 | MS.gene04619 | PPI |
| MS.gene84178 | MS.gene034496 | PPI |
| MS.gene84178 | MS.gene52655 | PPI |
| MS.gene84178 | MS.gene017981 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84178.t1 | MTR_7g068780 | 95.291 | 446 | 19 | 1 | 1 | 444 | 1 | 446 | 0.0 | 854 |
| MS.gene84178.t1 | MTR_4g015630 | 74.777 | 448 | 101 | 3 | 1 | 444 | 1 | 440 | 0.0 | 669 |
| MS.gene84178.t1 | MTR_7g068780 | 94.690 | 339 | 16 | 1 | 1 | 337 | 1 | 339 | 0.0 | 638 |
| MS.gene84178.t1 | MTR_5g071170 | 71.510 | 351 | 100 | 0 | 87 | 437 | 35 | 385 | 0.0 | 555 |
| MS.gene84178.t1 | MTR_3g464330 | 68.449 | 374 | 112 | 2 | 73 | 444 | 16 | 385 | 0.0 | 530 |
| MS.gene84178.t1 | MTR_7g093200 | 37.202 | 336 | 190 | 7 | 79 | 396 | 64 | 396 | 7.72e-64 | 212 |
| MS.gene84178.t1 | MTR_1g054035 | 36.012 | 336 | 196 | 6 | 76 | 395 | 13 | 345 | 1.25e-63 | 210 |
| MS.gene84178.t1 | MTR_1g111880 | 34.472 | 322 | 180 | 7 | 90 | 396 | 23 | 328 | 1.53e-53 | 183 |
| MS.gene84178.t1 | MTR_4g130980 | 28.443 | 334 | 223 | 8 | 69 | 397 | 75 | 397 | 1.30e-32 | 129 |
| MS.gene84178.t1 | MTR_2g460790 | 27.000 | 400 | 262 | 11 | 12 | 397 | 15 | 398 | 2.12e-31 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84178.t1 | AT5G05580 | 69.752 | 443 | 121 | 3 | 1 | 440 | 1 | 433 | 0.0 | 656 |
| MS.gene84178.t1 | AT3G11170 | 69.300 | 443 | 134 | 2 | 1 | 442 | 1 | 442 | 0.0 | 647 |
| MS.gene84178.t1 | AT5G05580 | 70.619 | 388 | 101 | 3 | 1 | 385 | 1 | 378 | 0.0 | 574 |
| MS.gene84178.t1 | AT2G29980 | 65.104 | 384 | 129 | 2 | 63 | 444 | 4 | 384 | 0.0 | 526 |
| MS.gene84178.t1 | AT2G29980 | 63.636 | 275 | 97 | 1 | 63 | 337 | 4 | 275 | 3.82e-126 | 367 |
| MS.gene84178.t1 | AT3G12120 | 35.860 | 343 | 200 | 8 | 71 | 396 | 6 | 345 | 1.07e-65 | 216 |
| MS.gene84178.t1 | AT3G12120 | 35.860 | 343 | 200 | 8 | 71 | 396 | 6 | 345 | 1.07e-65 | 216 |
| MS.gene84178.t1 | AT4G30950 | 28.933 | 356 | 226 | 11 | 52 | 394 | 54 | 395 | 2.03e-33 | 131 |
Find 99 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATTACTCATGCTTTA+TGG | 0.109554 | 7.1:+33027729 | MS.gene84178:CDS |
| GGATGGTTTGGCCTCTTTAT+TGG | 0.161417 | 7.1:+33026447 | MS.gene84178:CDS |
| CTGCTCAAGGAACCATGTTT+TGG | 0.170227 | 7.1:+33026471 | MS.gene84178:CDS |
| ACAAAACCTGTTCTTGGTTT+TGG | 0.203188 | 7.1:-33026080 | None:intergenic |
| GATGGTTTGGCCTCTTTATT+GGG | 0.236131 | 7.1:+33026448 | MS.gene84178:CDS |
| TTCTTAATAATTGGATGGTT+TGG | 0.246549 | 7.1:+33026435 | MS.gene84178:CDS |
| ACTACTATTGACCGCGATTA+TGG | 0.247284 | 7.1:+33028485 | MS.gene84178:CDS |
| GTTTGGTCCAAGTGAGAAAA+AGG | 0.260081 | 7.1:+33027632 | MS.gene84178:CDS |
| TTTCAACATGGCCATGATTC+TGG | 0.264541 | 7.1:-33027069 | None:intergenic |
| ACCAGTCTTCCCAGGACTTC+TGG | 0.274716 | 7.1:-33027583 | None:intergenic |
| GGAAGAGGAGCTGATTTCTT+TGG | 0.277203 | 7.1:-33028734 | None:intergenic |
| ATCTTATTGGAGAATTTATA+AGG | 0.282216 | 7.1:+33028762 | MS.gene84178:CDS |
| TCCTTAAAATCACAAGCTTT+TGG | 0.294485 | 7.1:-33026176 | None:intergenic |
| CTTATATCAGCCAATGTAAA+TGG | 0.296570 | 7.1:-33026308 | None:intergenic |
| GACACAACAAAACCTGTTCT+TGG | 0.307873 | 7.1:-33026086 | None:intergenic |
| AAATTTAGCCTTTGAATTGT+TGG | 0.315210 | 7.1:-33026108 | None:intergenic |
| AATCATGACCAAGAACAAAA+AGG | 0.317453 | 7.1:-33026496 | None:intergenic |
| CATCCCAGCAGTGACTTGTT+TGG | 0.326413 | 7.1:+33027615 | MS.gene84178:CDS |
| TCAATTCTTGTTCCCTATCA+TGG | 0.336107 | 7.1:+33026916 | MS.gene84178:CDS |
| TCTTAAATTTCATTCTGATT+TGG | 0.337793 | 7.1:-33028864 | None:intergenic |
| CCTAATCTTAACAGTGTTGT+TGG | 0.371102 | 7.1:+33026877 | MS.gene84178:CDS |
| AGTCACTGCTGGGATGGAAA+TGG | 0.376732 | 7.1:-33027608 | None:intergenic |
| GCTATGGTGGCATTGCTTGT+AGG | 0.377173 | 7.1:+33027684 | MS.gene84178:CDS |
| CCAACAACACTGTTAAGATT+AGG | 0.378693 | 7.1:-33026877 | None:intergenic |
| TTCATTCTTCTATGGCAACC+TGG | 0.379979 | 7.1:+33026015 | None:intergenic |
| TAAAGCATGAGTAATGGAAT+TGG | 0.386548 | 7.1:-33027726 | None:intergenic |
| TCTTTCACCCAACAATGCTT+TGG | 0.388930 | 7.1:-33026341 | None:intergenic |
| TGATAACTTCTACTGCTTGT+TGG | 0.390054 | 7.1:+33027658 | MS.gene84178:CDS |
| ATGCAGTGGGCCAGAAGTCC+TGG | 0.395799 | 7.1:+33027573 | MS.gene84178:intron |
| CACTAATTTCAGAATCTGTT+TGG | 0.396613 | 7.1:-33028835 | None:intergenic |
| CAGCAATTCCAAAGCATTGT+TGG | 0.398283 | 7.1:+33026333 | MS.gene84178:CDS |
| CATAACATACCATCCATGAT+AGG | 0.399195 | 7.1:-33026929 | None:intergenic |
| GTGGCATTGCTTGTAGGATT+GGG | 0.423209 | 7.1:+33027690 | MS.gene84178:CDS |
| CAAACAGATTCTGAAATTAG+TGG | 0.428433 | 7.1:+33028836 | MS.gene84178:CDS |
| GTAGGATTGGGATTTACAAT+TGG | 0.429127 | 7.1:+33027702 | MS.gene84178:CDS |
| ATTGTTGGGTGAAAGATTCA+TGG | 0.438978 | 7.1:+33026348 | MS.gene84178:CDS |
| TAGGAATGGAGCTATCTTAG+AGG | 0.444853 | 7.1:+33028455 | MS.gene84178:intron |
| TACTGCTTGTTGGACTGCTA+TGG | 0.447734 | 7.1:+33027668 | MS.gene84178:CDS |
| TCAATTGAGTCAACCCTCAA+TGG | 0.449956 | 7.1:-33026230 | None:intergenic |
| GAGGCAGCAAGACCTGTGTT+TGG | 0.458232 | 7.1:+33028695 | MS.gene84178:CDS |
| AGGTGATAGTGTGGAATTTG+AGG | 0.461549 | 7.1:-33028563 | None:intergenic |
| GTCACTGCTGGGATGGAAAT+GGG | 0.462406 | 7.1:-33027607 | None:intergenic |
| GGTGGCATTGCTTGTAGGAT+TGG | 0.463654 | 7.1:+33027689 | MS.gene84178:CDS |
| GCCAGAAGTCCTGGGAAGAC+TGG | 0.465518 | 7.1:+33027582 | MS.gene84178:CDS |
| AGCAATTCCAAAGCATTGTT+GGG | 0.468648 | 7.1:+33026334 | MS.gene84178:CDS |
| TATACAGGAGAATTAGTCAT+AGG | 0.472631 | 7.1:+33027038 | MS.gene84178:intron |
| GTATTTCCAAAACCAAGAAC+AGG | 0.474801 | 7.1:+33026074 | MS.gene84178:CDS |
| CCTCTTTATTGGGCTGCTCA+AGG | 0.476332 | 7.1:+33026458 | MS.gene84178:CDS |
| TGGACCAAACAAGTCACTGC+TGG | 0.478611 | 7.1:-33027619 | None:intergenic |
| GTGACTTACTTGCACCATCA+TGG | 0.478921 | 7.1:+33027887 | MS.gene84178:CDS |
| TCATTCTTCTATGGCAACCT+GGG | 0.481757 | 7.1:+33026016 | None:intergenic |
| AATTGAACAAGAACAAGAAC+AGG | 0.484056 | 7.1:+33026247 | MS.gene84178:CDS |
| AATTCTCCAATAAGATGAAA+AGG | 0.487330 | 7.1:-33028755 | None:intergenic |
| AATAACATTCACCATGACAT+TGG | 0.490823 | 7.1:+33028515 | MS.gene84178:CDS |
| ACAAGAACAAGAACAGGAAC+AGG | 0.495848 | 7.1:+33026253 | MS.gene84178:CDS |
| GAGATGAAACTTACAACATA+CGG | 0.502661 | 7.1:-33027756 | None:intergenic |
| CTATTGACCGCGATTATGGA+TGG | 0.507864 | 7.1:+33028489 | MS.gene84178:CDS |
| GAGTTACCAGAGTTTGATCC+TGG | 0.511019 | 7.1:+33026275 | MS.gene84178:CDS |
| GAATGTGAGTACTCCATTGA+GGG | 0.511988 | 7.1:+33026217 | MS.gene84178:CDS |
| GGTGATAGTGTGGAATTTGA+GGG | 0.516178 | 7.1:-33028562 | None:intergenic |
| GGATATGCAAGCAATGGAAA+AGG | 0.519991 | 7.1:-33027447 | None:intergenic |
| TTTAAGGAAAAGAGAAAATG+GGG | 0.522052 | 7.1:+33026191 | MS.gene84178:CDS |
| AGGACTCATCACCAGAATCA+TGG | 0.529486 | 7.1:+33027058 | MS.gene84178:CDS |
| TGTTGTGTCCAACAATTCAA+AGG | 0.531174 | 7.1:+33026100 | MS.gene84178:CDS |
| AAATGACGAGTCTTGGCATC+CGG | 0.531545 | 7.1:+33027090 | MS.gene84178:CDS |
| GATCATTATGTTAGTGACAC+TGG | 0.532354 | 7.1:+33028797 | MS.gene84178:CDS |
| TTCACCACCACCATTTACAT+TGG | 0.537892 | 7.1:+33026298 | MS.gene84178:CDS |
| CCAATAAGATGAAAAGGAAG+AGG | 0.538126 | 7.1:-33028749 | None:intergenic |
| TTCTTGTTCCCTATCATGGA+TGG | 0.540256 | 7.1:+33026920 | MS.gene84178:CDS |
| GACAAATTACCTTGGTATCG+TGG | 0.541472 | 7.1:+33027917 | MS.gene84178:CDS |
| ATGTTGAAAATGACGAGTCT+TGG | 0.543891 | 7.1:+33027083 | MS.gene84178:CDS |
| TGAATGTGAGTACTCCATTG+AGG | 0.554279 | 7.1:+33026216 | MS.gene84178:CDS |
| AAATGGGAACCAGTCTTCCC+AGG | 0.559704 | 7.1:-33027591 | None:intergenic |
| ACTCCATAAAGCATGAGTAA+TGG | 0.560961 | 7.1:-33027732 | None:intergenic |
| CAAACAAGTCACTGCTGGGA+TGG | 0.566530 | 7.1:-33027614 | None:intergenic |
| GGACCAAACAAGTCACTGCT+GGG | 0.570996 | 7.1:-33027618 | None:intergenic |
| GTAAATGGTGGTGGTGAACC+AGG | 0.571749 | 7.1:-33026293 | None:intergenic |
| TTGTAATATTCTCCAAACAC+AGG | 0.573097 | 7.1:-33028707 | None:intergenic |
| TGCTTGTTGGACTGCTATGG+TGG | 0.574412 | 7.1:+33027671 | MS.gene84178:CDS |
| TTTGGAAATACTGGAGCAAG+TGG | 0.574925 | 7.1:-33026062 | None:intergenic |
| TGCAGTGGGCCAGAAGTCCT+GGG | 0.574948 | 7.1:+33027574 | MS.gene84178:intron |
| CCTTGAGCAGCCCAATAAAG+AGG | 0.576755 | 7.1:-33026458 | None:intergenic |
| TACACAGGATATGCAAGCAA+TGG | 0.581321 | 7.1:-33027453 | None:intergenic |
| AGATACTCACAGCTTCAACT+AGG | 0.590574 | 7.1:-33028583 | None:intergenic |
| AGTGTGGAATTTGAGGGAAA+AGG | 0.599823 | 7.1:-33028556 | None:intergenic |
| ATAACATACCATCCATGATA+GGG | 0.602383 | 7.1:-33026928 | None:intergenic |
| GAATGGAGCTATCTTAGAGG+TGG | 0.607399 | 7.1:+33028458 | MS.gene84178:CDS |
| ATTACCTTGGTATCGTGGAA+AGG | 0.611215 | 7.1:+33027922 | MS.gene84178:CDS |
| GTCATGAAGACAAATTACCT+TGG | 0.612404 | 7.1:+33027909 | MS.gene84178:CDS |
| GGTGAACCAGGATCAAACTC+TGG | 0.614380 | 7.1:-33026281 | None:intergenic |
| GCTTCAACTAGGTGATAGTG+TGG | 0.622119 | 7.1:-33028572 | None:intergenic |
| CGACATGAGTTCCAATGTCA+TGG | 0.632856 | 7.1:-33028526 | None:intergenic |
| TCAGCCAATGTAAATGGTGG+TGG | 0.634606 | 7.1:-33026302 | None:intergenic |
| AAATAACTTACAAGGTACAC+AGG | 0.642457 | 7.1:-33027468 | None:intergenic |
| ACCACATTCTGATAAAACCC+AGG | 0.647421 | 7.1:-33026033 | None:intergenic |
| ATTTGTCTTCATGACCATGA+TGG | 0.654713 | 7.1:-33027901 | None:intergenic |
| AGTACCTTTCCACGATACCA+AGG | 0.662444 | 7.1:-33027926 | None:intergenic |
| ATATCAGCCAATGTAAATGG+TGG | 0.666664 | 7.1:-33026305 | None:intergenic |
| TATTAATCCATCCATAATCG+CGG | 0.702360 | 7.1:-33028496 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATATGTAAACTAAAAT+CGG | - | chr7.1:33028420-33028439 | None:intergenic | 10.0% |
| !! | ATTTGAATATTAATTAGTTC+TGG | + | chr7.1:33027516-33027535 | MS.gene84178:intron | 15.0% |
| !! | TAGTATAAAATATTGTCAAA+CGG | - | chr7.1:33026656-33026675 | None:intergenic | 15.0% |
| !!! | ACATTTGTATTAGAATTTTA+AGG | - | chr7.1:33027350-33027369 | None:intergenic | 15.0% |
| !!! | TACTTTTAATTTTTTTGCTA+TGG | + | chr7.1:33026752-33026771 | MS.gene84178:intron | 15.0% |
| !!! | TTAATCTTTATATGTTGATT+AGG | + | chr7.1:33028436-33028455 | MS.gene84178:intron | 15.0% |
| !! | AAATTCTAGTCAAAATTTGT+AGG | - | chr7.1:33027500-33027519 | None:intergenic | 20.0% |
| !! | AGAAAAAATATTTAAGAGCT+TGG | + | chr7.1:33027392-33027411 | MS.gene84178:CDS | 20.0% |
| !! | AGTATTCTTAAATGAGAAAA+TGG | - | chr7.1:33027311-33027330 | None:intergenic | 20.0% |
| !! | ATCTTATTGGAGAATTTATA+AGG | + | chr7.1:33028762-33028781 | MS.gene84178:CDS | 20.0% |
| !!! | AATTCAAAGGCTAAATTTTT+AGG | + | chr7.1:33026113-33026132 | MS.gene84178:CDS | 20.0% |
| !!! | ATTTTAAGGAAAAGAGAAAA+TGG | + | chr7.1:33026189-33026208 | MS.gene84178:CDS | 20.0% |
| !!! | TTTGATTTTGATTGTTGTTT+TGG | + | chr7.1:33026820-33026839 | MS.gene84178:intron | 20.0% |
| !!! | TTTTAAGGAAAAGAGAAAAT+GGG | + | chr7.1:33026190-33026209 | MS.gene84178:CDS | 20.0% |
| ! | AATTCTCCAATAAGATGAAA+AGG | - | chr7.1:33028758-33028777 | None:intergenic | 25.0% |
| ! | CTCTATCTTAGTTAAAACAA+TGG | + | chr7.1:33028610-33028629 | MS.gene84178:intron | 25.0% |
| ! | TATGTTTACCTTGATTATAC+AGG | + | chr7.1:33027023-33027042 | MS.gene84178:intron | 25.0% |
| ! | TATTGGATCAATGTACAATT+GGG | - | chr7.1:33028020-33028039 | None:intergenic | 25.0% |
| ! | TTATTGGATCAATGTACAAT+TGG | - | chr7.1:33028021-33028040 | None:intergenic | 25.0% |
| ! | TTCAGTCAAATATCAGATAT+TGG | + | chr7.1:33027992-33028011 | MS.gene84178:intron | 25.0% |
| ! | TTCTTAATAATTGGATGGTT+TGG | + | chr7.1:33026435-33026454 | MS.gene84178:CDS | 25.0% |
| ! | TTGTCGATAGTAGAAAATAA+CGG | + | chr7.1:33026582-33026601 | MS.gene84178:intron | 25.0% |
| ! | TTTAAGGAAAAGAGAAAATG+GGG | + | chr7.1:33026191-33026210 | MS.gene84178:CDS | 25.0% |
| !! | AAATTTAGCCTTTGAATTGT+TGG | - | chr7.1:33026111-33026130 | None:intergenic | 25.0% |
| !! | ATTTAGAGCAAAGTCAAATT+AGG | - | chr7.1:33027838-33027857 | None:intergenic | 25.0% |
| !! | CATGAATTTTCATTAGATGT+CGG | - | chr7.1:33027195-33027214 | None:intergenic | 25.0% |
| !! | CTTTATATGTTGATTAGGAA+TGG | + | chr7.1:33028441-33028460 | MS.gene84178:intron | 25.0% |
| !! | TGCTTTTCTTAATAATTGGA+TGG | + | chr7.1:33026430-33026449 | MS.gene84178:CDS | 25.0% |
| !! | TTTTCATTGATCAATTAGCA+TGG | + | chr7.1:33027780-33027799 | MS.gene84178:intron | 25.0% |
| !!! | AGAGATGTTGTTATTGTTTT+TGG | + | chr7.1:33026392-33026411 | MS.gene84178:CDS | 25.0% |
| !!! | ATATTAATTAGTTCTGGTAG+AGG | + | chr7.1:33027522-33027541 | MS.gene84178:intron | 25.0% |
| !!! | ATTAGCATGGTTTTAGTTTT+TGG | + | chr7.1:33027793-33027812 | MS.gene84178:intron | 25.0% |
| !!! | TGTTGTTATTGTTTTTGGTT+TGG | + | chr7.1:33026397-33026416 | MS.gene84178:CDS | 25.0% |
| !!! | TGTTTATTTTCATTAGACGT+TGG | + | chr7.1:33027261-33027280 | MS.gene84178:intron | 25.0% |
| AAATAACTTACAAGGTACAC+AGG | - | chr7.1:33027471-33027490 | None:intergenic | 30.0% | |
| AATAACATTCACCATGACAT+TGG | + | chr7.1:33028515-33028534 | MS.gene84178:CDS | 30.0% | |
| AATCATGACCAAGAACAAAA+AGG | - | chr7.1:33026499-33026518 | None:intergenic | 30.0% | |
| AATTGAACAAGAACAAGAAC+AGG | + | chr7.1:33026247-33026266 | MS.gene84178:CDS | 30.0% | |
| ATAACATACCATCCATGATA+GGG | - | chr7.1:33026931-33026950 | None:intergenic | 30.0% | |
| ATCAATCAAATTTCGATCGT+TGG | + | chr7.1:33028101-33028120 | MS.gene84178:intron | 30.0% | |
| ATCATGACCAAGAACAAAAA+GGG | - | chr7.1:33026498-33026517 | None:intergenic | 30.0% | |
| ATTCCATTACTCATGCTTTA+TGG | + | chr7.1:33027729-33027748 | MS.gene84178:CDS | 30.0% | |
| CACTAATTTCAGAATCTGTT+TGG | - | chr7.1:33028838-33028857 | None:intergenic | 30.0% | |
| CTAATTCTCCTGTATAATCA+AGG | - | chr7.1:33027034-33027053 | None:intergenic | 30.0% | |
| CTTATATCAGCCAATGTAAA+TGG | - | chr7.1:33026311-33026330 | None:intergenic | 30.0% | |
| GAGATGAAACTTACAACATA+CGG | - | chr7.1:33027759-33027778 | None:intergenic | 30.0% | |
| GGCACAATAAATAACTTACA+AGG | - | chr7.1:33027479-33027498 | None:intergenic | 30.0% | |
| TATACAGGAGAATTAGTCAT+AGG | + | chr7.1:33027038-33027057 | MS.gene84178:intron | 30.0% | |
| TATTAATCCATCCATAATCG+CGG | - | chr7.1:33028499-33028518 | None:intergenic | 30.0% | |
| TTAATCCAACAGACGAAATA+TGG | + | chr7.1:33028348-33028367 | MS.gene84178:intron | 30.0% | |
| TTGTAATATTCTCCAAACAC+AGG | - | chr7.1:33028710-33028729 | None:intergenic | 30.0% | |
| ! | AATTGAAGGTTTTTGTGATG+TGG | + | chr7.1:33027855-33027874 | MS.gene84178:intron | 30.0% |
| ! | ACCAAAAGCTTGTGATTTTA+AGG | + | chr7.1:33026175-33026194 | MS.gene84178:CDS | 30.0% |
| ! | TAAAGCATGAGTAATGGAAT+TGG | - | chr7.1:33027729-33027748 | None:intergenic | 30.0% |
| ! | TCCTTAAAATCACAAGCTTT+TGG | - | chr7.1:33026179-33026198 | None:intergenic | 30.0% |
| ! | TTGACTTTGCTCTAAATTGA+AGG | + | chr7.1:33027841-33027860 | MS.gene84178:intron | 30.0% |
| ! | TTTTTGTTCTTGGTCATGAT+TGG | + | chr7.1:33026498-33026517 | MS.gene84178:CDS | 30.0% |
| !! | CAAACAGATTCTGAAATTAG+TGG | + | chr7.1:33028836-33028855 | MS.gene84178:CDS | 30.0% |
| !! | TTTTGCTATGGTTGACTTTT+GGG | + | chr7.1:33026764-33026783 | MS.gene84178:intron | 30.0% |
| !! | TTTTTGCTATGGTTGACTTT+TGG | + | chr7.1:33026763-33026782 | MS.gene84178:intron | 30.0% |
| !!! | AGTGATTTGTTTTTAGAGTC+AGG | + | chr7.1:33028639-33028658 | MS.gene84178:intron | 30.0% |
| !!! | CTGCTGCTTTTCTTAATAAT+TGG | + | chr7.1:33026426-33026445 | MS.gene84178:CDS | 30.0% |
| !!! | TGTTGTTTTGGAATTTTCAG+TGG | + | chr7.1:33026832-33026851 | MS.gene84178:intron | 30.0% |
| !!! | TTTTTGGTTTGTAGATGTGT+CGG | + | chr7.1:33028078-33028097 | MS.gene84178:intron | 30.0% |
| ACAGTCAAGATTTGACTGAA+TGG | - | chr7.1:33028202-33028221 | None:intergenic | 35.0% | |
| ACTCCATAAAGCATGAGTAA+TGG | - | chr7.1:33027735-33027754 | None:intergenic | 35.0% | |
| AGAGAATGTTATCTTCTCAC+CGG | - | chr7.1:33027112-33027131 | None:intergenic | 35.0% | |
| ATATCAGCCAATGTAAATGG+TGG | - | chr7.1:33026308-33026327 | None:intergenic | 35.0% | |
| ATGTTGAAAATGACGAGTCT+TGG | + | chr7.1:33027083-33027102 | MS.gene84178:CDS | 35.0% | |
| ATTGTTGGGTGAAAGATTCA+TGG | + | chr7.1:33026348-33026367 | MS.gene84178:CDS | 35.0% | |
| ATTTGTCTTCATGACCATGA+TGG | - | chr7.1:33027904-33027923 | None:intergenic | 35.0% | |
| CAAACCAAAAAACACATTGG+TGG | - | chr7.1:33028178-33028197 | None:intergenic | 35.0% | |
| CAAATCTTGACTGTTTGATG+AGG | + | chr7.1:33028208-33028227 | MS.gene84178:intron | 35.0% | |
| CAGTCGAAACTTTGACTAAA+TGG | - | chr7.1:33028310-33028329 | None:intergenic | 35.0% | |
| CAGTGCAGTAAAGTCATATT+TGG | - | chr7.1:33028234-33028253 | None:intergenic | 35.0% | |
| CATAACATACCATCCATGAT+AGG | - | chr7.1:33026932-33026951 | None:intergenic | 35.0% | |
| CCAACAACACTGTTAAGATT+AGG | - | chr7.1:33026880-33026899 | None:intergenic | 35.0% | |
| CCAATAAGATGAAAAGGAAG+AGG | - | chr7.1:33028752-33028771 | None:intergenic | 35.0% | |
| CCTAATCTTAACAGTGTTGT+TGG | + | chr7.1:33026877-33026896 | MS.gene84178:CDS | 35.0% | |
| CTAGTCTGTACAGTCATATT+TGG | - | chr7.1:33028154-33028173 | None:intergenic | 35.0% | |
| GATCATTATGTTAGTGACAC+TGG | + | chr7.1:33028797-33028816 | MS.gene84178:CDS | 35.0% | |
| GGACAAACCAAAAAACACAT+TGG | - | chr7.1:33028181-33028200 | None:intergenic | 35.0% | |
| GTAGGATTGGGATTTACAAT+TGG | + | chr7.1:33027702-33027721 | MS.gene84178:CDS | 35.0% | |
| GTATTTCCAAAACCAAGAAC+AGG | + | chr7.1:33026074-33026093 | MS.gene84178:CDS | 35.0% | |
| GTCATGAAGACAAATTACCT+TGG | + | chr7.1:33027909-33027928 | MS.gene84178:CDS | 35.0% | |
| GTTTACAAAGTACGCTTATG+TGG | - | chr7.1:33027224-33027243 | None:intergenic | 35.0% | |
| TACAGTCATATTTGGCCTAT+CGG | - | chr7.1:33028146-33028165 | None:intergenic | 35.0% | |
| TCAATTCTTGTTCCCTATCA+TGG | + | chr7.1:33026916-33026935 | MS.gene84178:CDS | 35.0% | |
| TGATAACTTCTACTGCTTGT+TGG | + | chr7.1:33027658-33027677 | MS.gene84178:CDS | 35.0% | |
| TGTTGTGTCCAACAATTCAA+AGG | + | chr7.1:33026100-33026119 | MS.gene84178:CDS | 35.0% | |
| TGTTGTTCTTTGAATGCAGT+GGG | + | chr7.1:33027560-33027579 | MS.gene84178:intron | 35.0% | |
| TTAGTCAAAGTTTCGACTGT+TGG | + | chr7.1:33028311-33028330 | MS.gene84178:intron | 35.0% | |
| TTGATCCAATAAGCGAGATA+TGG | + | chr7.1:33028029-33028048 | MS.gene84178:intron | 35.0% | |
| ! | ACAAAACCTGTTCTTGGTTT+TGG | - | chr7.1:33026083-33026102 | None:intergenic | 35.0% |
| ! | ATCACATCCTTTTTCTCACT+TGG | - | chr7.1:33027642-33027661 | None:intergenic | 35.0% |
| ! | CCTCTTCCTTTTCATCTTAT+TGG | + | chr7.1:33028749-33028768 | MS.gene84178:CDS | 35.0% |
| ! | TTGTTCAAATTTTGCTACGC+AGG | + | chr7.1:33026606-33026625 | MS.gene84178:intron | 35.0% |
| ! | TTGTTGTTCTTTGAATGCAG+TGG | + | chr7.1:33027559-33027578 | MS.gene84178:intron | 35.0% |
| ! | TTTTGTGATGTGGTTGGATT+TGG | + | chr7.1:33027865-33027884 | MS.gene84178:CDS | 35.0% |
| !! | AAGACTCGTCATTTTCAACA+TGG | - | chr7.1:33027084-33027103 | None:intergenic | 35.0% |
| !! | AGCAATTCCAAAGCATTGTT+GGG | + | chr7.1:33026334-33026353 | MS.gene84178:CDS | 35.0% |
| !! | TTTGGAATTTTCAGTGGTCA+TGG | + | chr7.1:33026838-33026857 | MS.gene84178:intron | 35.0% |
| !!! | GACTTTTGGGTTGTAGAATT+TGG | + | chr7.1:33026777-33026796 | MS.gene84178:intron | 35.0% |
| !!! | GTTCTTGGTTTTGGAAATAC+TGG | - | chr7.1:33026074-33026093 | None:intergenic | 35.0% |
| !!! | TAGACCACCAATGTGTTTTT+TGG | + | chr7.1:33028171-33028190 | MS.gene84178:intron | 35.0% |
| AAAAGACTGTACTGCTACAG+AGG | - | chr7.1:33027973-33027992 | None:intergenic | 40.0% | |
| AACAAAAAGGGCCCAAAACA+TGG | - | chr7.1:33026486-33026505 | None:intergenic | 40.0% | |
| ACAAGAACAAGAACAGGAAC+AGG | + | chr7.1:33026253-33026272 | MS.gene84178:CDS | 40.0% | |
| ACCACATTCTGATAAAACCC+AGG | - | chr7.1:33026036-33026055 | None:intergenic | 40.0% | |
| ACTACTATTGACCGCGATTA+TGG | + | chr7.1:33028485-33028504 | MS.gene84178:CDS | 40.0% | |
| AGATACTCACAGCTTCAACT+AGG | - | chr7.1:33028586-33028605 | None:intergenic | 40.0% | |
| AGTGTGGAATTTGAGGGAAA+AGG | - | chr7.1:33028559-33028578 | None:intergenic | 40.0% | |
| ATATTTGGCCTATCGGATCA+AGG | - | chr7.1:33028139-33028158 | None:intergenic | 40.0% | |
| ATGACTTTACTGCACTGAGA+CGG | + | chr7.1:33028237-33028256 | MS.gene84178:intron | 40.0% | |
| ATGAGAAAATGGCACATGCA+CGG | - | chr7.1:33027300-33027319 | None:intergenic | 40.0% | |
| ATTACCTTGGTATCGTGGAA+AGG | + | chr7.1:33027922-33027941 | MS.gene84178:CDS | 40.0% | |
| CAATTGTACCTTGATCCGAT+AGG | + | chr7.1:33028128-33028147 | MS.gene84178:intron | 40.0% | |
| CGAGATATGGCTACATTGAT+CGG | + | chr7.1:33028042-33028061 | MS.gene84178:intron | 40.0% | |
| GAATGTGAGTACTCCATTGA+GGG | + | chr7.1:33026217-33026236 | MS.gene84178:CDS | 40.0% | |
| GACAAATTACCTTGGTATCG+TGG | + | chr7.1:33027917-33027936 | MS.gene84178:CDS | 40.0% | |
| GACACAACAAAACCTGTTCT+TGG | - | chr7.1:33026089-33026108 | None:intergenic | 40.0% | |
| GGATATGCAAGCAATGGAAA+AGG | - | chr7.1:33027450-33027469 | None:intergenic | 40.0% | |
| GTTTGGTCCAAGTGAGAAAA+AGG | + | chr7.1:33027632-33027651 | MS.gene84178:CDS | 40.0% | |
| TACACAGGATATGCAAGCAA+TGG | - | chr7.1:33027456-33027475 | None:intergenic | 40.0% | |
| TAGGAATGGAGCTATCTTAG+AGG | + | chr7.1:33028455-33028474 | MS.gene84178:intron | 40.0% | |
| TCAATTGAGTCAACCCTCAA+TGG | - | chr7.1:33026233-33026252 | None:intergenic | 40.0% | |
| TCTTTCACCCAACAATGCTT+TGG | - | chr7.1:33026344-33026363 | None:intergenic | 40.0% | |
| TGAATGTGAGTACTCCATTG+AGG | + | chr7.1:33026216-33026235 | MS.gene84178:CDS | 40.0% | |
| TGTAGCCATATCTCGCTTAT+TGG | - | chr7.1:33028037-33028056 | None:intergenic | 40.0% | |
| TTCACCACCACCATTTACAT+TGG | + | chr7.1:33026298-33026317 | MS.gene84178:CDS | 40.0% | |
| TTCTTGTTCCCTATCATGGA+TGG | + | chr7.1:33026920-33026939 | MS.gene84178:CDS | 40.0% | |
| TTTCAACATGGCCATGATTC+TGG | - | chr7.1:33027072-33027091 | None:intergenic | 40.0% | |
| TTTGGAAATACTGGAGCAAG+TGG | - | chr7.1:33026065-33026084 | None:intergenic | 40.0% | |
| ! | AGGTGATAGTGTGGAATTTG+AGG | - | chr7.1:33028566-33028585 | None:intergenic | 40.0% |
| ! | GAAGGTTTTTGTGATGTGGT+TGG | + | chr7.1:33027859-33027878 | MS.gene84178:intron | 40.0% |
| ! | GATGGTTTGGCCTCTTTATT+GGG | + | chr7.1:33026448-33026467 | MS.gene84178:CDS | 40.0% |
| ! | GGTGATAGTGTGGAATTTGA+GGG | - | chr7.1:33028565-33028584 | None:intergenic | 40.0% |
| ! | TGCTCAAGGAACCATGTTTT+GGG | + | chr7.1:33026472-33026491 | MS.gene84178:CDS | 40.0% |
| ! | TTTTGGGCCCTTTTTGTTCT+TGG | + | chr7.1:33026488-33026507 | MS.gene84178:CDS | 40.0% |
| !! | ACCTGGGTTTTATCAGAATG+TGG | + | chr7.1:33026032-33026051 | MS.gene84178:CDS | 40.0% |
| !! | CAGCAATTCCAAAGCATTGT+TGG | + | chr7.1:33026333-33026352 | MS.gene84178:CDS | 40.0% |
| !! | TTTGCTTTGTTTGCAGACTG+AGG | + | chr7.1:33028676-33028695 | MS.gene84178:intron | 40.0% |
| AAATGACGAGTCTTGGCATC+CGG | + | chr7.1:33027090-33027109 | MS.gene84178:CDS | 45.0% | |
| AGGACTCATCACCAGAATCA+TGG | + | chr7.1:33027058-33027077 | MS.gene84178:CDS | 45.0% | |
| AGTACCTTTCCACGATACCA+AGG | - | chr7.1:33027929-33027948 | None:intergenic | 45.0% | |
| CGACATGAGTTCCAATGTCA+TGG | - | chr7.1:33028529-33028548 | None:intergenic | 45.0% | |
| CTATTGACCGCGATTATGGA+TGG | + | chr7.1:33028489-33028508 | MS.gene84178:CDS | 45.0% | |
| GAATGGAGCTATCTTAGAGG+TGG | + | chr7.1:33028458-33028477 | MS.gene84178:CDS | 45.0% | |
| GAGTTACCAGAGTTTGATCC+TGG | + | chr7.1:33026275-33026294 | MS.gene84178:CDS | 45.0% | |
| GTGACTTACTTGCACCATCA+TGG | + | chr7.1:33027887-33027906 | MS.gene84178:CDS | 45.0% | |
| GTGGCATTGCTTGTAGGATT+GGG | + | chr7.1:33027690-33027709 | MS.gene84178:CDS | 45.0% | |
| TCAGCCAATGTAAATGGTGG+TGG | - | chr7.1:33026305-33026324 | None:intergenic | 45.0% | |
| TGACTTTACTGCACTGAGAC+GGG | + | chr7.1:33028238-33028257 | MS.gene84178:intron | 45.0% | |
| ! | CTGCTCAAGGAACCATGTTT+TGG | + | chr7.1:33026471-33026490 | MS.gene84178:CDS | 45.0% |
| ! | GCTTCAACTAGGTGATAGTG+TGG | - | chr7.1:33028575-33028594 | None:intergenic | 45.0% |
| ! | GGAAGAGGAGCTGATTTCTT+TGG | - | chr7.1:33028737-33028756 | None:intergenic | 45.0% |
| ! | GGATGGTTTGGCCTCTTTAT+TGG | + | chr7.1:33026447-33026466 | MS.gene84178:CDS | 45.0% |
| ! | TACTGCTTGTTGGACTGCTA+TGG | + | chr7.1:33027668-33027687 | MS.gene84178:CDS | 45.0% |
| !!! | CGGATGACTGCTAGTCTTTT+TGG | + | chr7.1:33028062-33028081 | MS.gene84178:intron | 45.0% |
| AAATGGGAACCAGTCTTCCC+AGG | - | chr7.1:33027594-33027613 | None:intergenic | 50.0% | |
| AGTCACTGCTGGGATGGAAA+TGG | - | chr7.1:33027611-33027630 | None:intergenic | 50.0% | |
| CAAACAAGTCACTGCTGGGA+TGG | - | chr7.1:33027617-33027636 | None:intergenic | 50.0% | |
| CAGACGAAATATGGCCGCAT+TGG | + | chr7.1:33028357-33028376 | MS.gene84178:intron | 50.0% | |
| CCTCTTTATTGGGCTGCTCA+AGG | + | chr7.1:33026458-33026477 | MS.gene84178:CDS | 50.0% | |
| CCTTGAGCAGCCCAATAAAG+AGG | - | chr7.1:33026461-33026480 | None:intergenic | 50.0% | |
| GCTATGGTGGCATTGCTTGT+AGG | + | chr7.1:33027684-33027703 | MS.gene84178:CDS | 50.0% | |
| GGACCAAACAAGTCACTGCT+GGG | - | chr7.1:33027621-33027640 | None:intergenic | 50.0% | |
| GGTGAACCAGGATCAAACTC+TGG | - | chr7.1:33026284-33026303 | None:intergenic | 50.0% | |
| GGTGGCATTGCTTGTAGGAT+TGG | + | chr7.1:33027689-33027708 | MS.gene84178:CDS | 50.0% | |
| GTCACTGCTGGGATGGAAAT+GGG | - | chr7.1:33027610-33027629 | None:intergenic | 50.0% | |
| TGCGGCCATATTTCGTCTGT+TGG | - | chr7.1:33028356-33028375 | None:intergenic | 50.0% | |
| TGGACCAAACAAGTCACTGC+TGG | - | chr7.1:33027622-33027641 | None:intergenic | 50.0% | |
| ! | CGAAATATGGCCGCATTGGT+TGG | + | chr7.1:33028361-33028380 | MS.gene84178:intron | 50.0% |
| ! | TGCTTGTTGGACTGCTATGG+TGG | + | chr7.1:33027671-33027690 | MS.gene84178:CDS | 50.0% |
| !! | ATATGGCCGCATTGGTTGGA+CGG | + | chr7.1:33028365-33028384 | MS.gene84178:intron | 50.0% |
| !! | CATCCCAGCAGTGACTTGTT+TGG | + | chr7.1:33027615-33027634 | MS.gene84178:CDS | 50.0% |
| !! | GTAAATGGTGGTGGTGAACC+AGG | - | chr7.1:33026296-33026315 | None:intergenic | 50.0% |
| ACCAGTCTTCCCAGGACTTC+TGG | - | chr7.1:33027586-33027605 | None:intergenic | 55.0% | |
| GAGGCAGCAAGACCTGTGTT+TGG | + | chr7.1:33028695-33028714 | MS.gene84178:CDS | 55.0% | |
| TTGCAGCCGTCCAACCAATG+CGG | - | chr7.1:33028374-33028393 | None:intergenic | 55.0% | |
| ATGCAGTGGGCCAGAAGTCC+TGG | + | chr7.1:33027573-33027592 | MS.gene84178:intron | 60.0% | |
| GCCAGAAGTCCTGGGAAGAC+TGG | + | chr7.1:33027582-33027601 | MS.gene84178:CDS | 60.0% | |
| TGCAGTGGGCCAGAAGTCCT+GGG | + | chr7.1:33027574-33027593 | MS.gene84178:intron | 60.0% | |
| ! | CTGAGACGGGCATCGCTAAC+TGG | + | chr7.1:33028251-33028270 | MS.gene84178:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 33026026 | 33028877 | 33026026 | ID=MS.gene84178 |
| chr7.1 | mRNA | 33026026 | 33028877 | 33026026 | ID=MS.gene84178.t1;Parent=MS.gene84178 |
| chr7.1 | exon | 33026026 | 33026519 | 33026026 | ID=MS.gene84178.t1.exon1;Parent=MS.gene84178.t1 |
| chr7.1 | CDS | 33026026 | 33026519 | 33026026 | ID=cds.MS.gene84178.t1;Parent=MS.gene84178.t1 |
| chr7.1 | exon | 33026852 | 33026941 | 33026852 | ID=MS.gene84178.t1.exon2;Parent=MS.gene84178.t1 |
| chr7.1 | CDS | 33026852 | 33026941 | 33026852 | ID=cds.MS.gene84178.t1;Parent=MS.gene84178.t1 |
| chr7.1 | exon | 33027045 | 33027111 | 33027045 | ID=MS.gene84178.t1.exon3;Parent=MS.gene84178.t1 |
| chr7.1 | CDS | 33027045 | 33027111 | 33027045 | ID=cds.MS.gene84178.t1;Parent=MS.gene84178.t1 |
| chr7.1 | exon | 33027387 | 33027479 | 33027387 | ID=MS.gene84178.t1.exon4;Parent=MS.gene84178.t1 |
| chr7.1 | CDS | 33027387 | 33027479 | 33027387 | ID=cds.MS.gene84178.t1;Parent=MS.gene84178.t1 |
| chr7.1 | exon | 33027579 | 33027764 | 33027579 | ID=MS.gene84178.t1.exon5;Parent=MS.gene84178.t1 |
| chr7.1 | CDS | 33027579 | 33027764 | 33027579 | ID=cds.MS.gene84178.t1;Parent=MS.gene84178.t1 |
| chr7.1 | exon | 33027863 | 33027943 | 33027863 | ID=MS.gene84178.t1.exon6;Parent=MS.gene84178.t1 |
| chr7.1 | CDS | 33027863 | 33027943 | 33027863 | ID=cds.MS.gene84178.t1;Parent=MS.gene84178.t1 |
| chr7.1 | exon | 33028458 | 33028595 | 33028458 | ID=MS.gene84178.t1.exon7;Parent=MS.gene84178.t1 |
| chr7.1 | CDS | 33028458 | 33028595 | 33028458 | ID=cds.MS.gene84178.t1;Parent=MS.gene84178.t1 |
| chr7.1 | exon | 33028692 | 33028877 | 33028692 | ID=MS.gene84178.t1.exon8;Parent=MS.gene84178.t1 |
| chr7.1 | CDS | 33028692 | 33028877 | 33028692 | ID=cds.MS.gene84178.t1;Parent=MS.gene84178.t1 |
| Gene Sequence |
| Protein sequence |
