AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77362


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77362.t1 MTR_7g068780 95.291 446 19 1 1 444 1 446 0.0 854
MS.gene77362.t1 MTR_4g015630 75.223 448 99 3 1 444 1 440 0.0 669
MS.gene77362.t1 MTR_7g068780 94.985 339 15 1 1 337 1 339 0.0 639
MS.gene77362.t1 MTR_5g071170 70.940 351 102 0 87 437 35 385 0.0 553
MS.gene77362.t1 MTR_3g464330 68.449 374 112 2 73 444 16 385 0.0 528
MS.gene77362.t1 MTR_7g093200 37.015 335 190 6 80 396 65 396 9.64e-64 212
MS.gene77362.t1 MTR_1g054035 35.714 336 197 6 76 395 13 345 1.87e-63 209
MS.gene77362.t1 MTR_1g111880 34.161 322 181 7 90 396 23 328 4.87e-53 182
MS.gene77362.t1 MTR_4g130980 28.443 334 223 8 69 397 75 397 3.63e-32 127
MS.gene77362.t1 MTR_2g460790 26.750 400 263 11 12 397 15 398 4.18e-30 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77362.t1 AT5G05580 69.752 443 121 3 1 440 1 433 0.0 654
MS.gene77362.t1 AT3G11170 69.731 446 127 3 1 442 1 442 0.0 647
MS.gene77362.t1 AT5G05580 70.619 388 101 3 1 385 1 378 0.0 572
MS.gene77362.t1 AT2G29980 65.104 384 129 2 63 444 4 384 0.0 524
MS.gene77362.t1 AT2G29980 63.273 275 98 1 63 337 4 275 2.43e-125 365
MS.gene77362.t1 AT3G12120 35.613 351 202 9 63 396 2 345 1.25e-65 215
MS.gene77362.t1 AT3G12120 35.613 351 202 9 63 396 2 345 1.25e-65 215
MS.gene77362.t1 AT4G30950 29.226 349 220 11 59 394 61 395 1.77e-32 128

Find 102 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCATTACTCATGCTTTA+TGG 0.109554 7.2:+34949820 MS.gene77362:CDS
GGATGGTTTGGCCTCTTTAT+TGG 0.161417 7.2:+34948531 MS.gene77362:CDS
CTGCTCAAGGAACTATGTTT+TGG 0.165280 7.2:+34948555 MS.gene77362:CDS
ACAAAACCTGTTCTTGGTTT+TGG 0.203188 7.2:-34948164 None:intergenic
GATGGTTTGGCCTCTTTATT+GGG 0.236131 7.2:+34948532 MS.gene77362:CDS
TTCTTAATAATTGGATGGTT+TGG 0.246549 7.2:+34948519 MS.gene77362:CDS
GGAAGAGGAGCTGATTTCTT+TGG 0.246608 7.2:-34950819 None:intergenic
ACTACTATTGACCGCGATTA+TGG 0.247284 7.2:+34950576 MS.gene77362:CDS
GTTTGGTCCAAGTGAGAAAA+AGG 0.260081 7.2:+34949723 MS.gene77362:CDS
TTTCAACATGGCCATGATTC+TGG 0.264541 7.2:-34949155 None:intergenic
ACCTTATTGGAGAATTTATA+AGG 0.270680 7.2:+34950847 MS.gene77362:CDS
ACCAGTCTTCCCAGGACTTC+TGG 0.274716 7.2:-34949674 None:intergenic
CTTATATCAGCCAATGTAAA+TGG 0.296570 7.2:-34948392 None:intergenic
GACACAACAAAACCTGTTCT+TGG 0.307873 7.2:-34948170 None:intergenic
TCCTTATAAATTCTCCAATA+AGG 0.310337 7.2:-34950848 None:intergenic
AAATTTAGCCTTTGAATTGT+TGG 0.315210 7.2:-34948192 None:intergenic
AATCATGACCAAGAACAAAA+AGG 0.317453 7.2:-34948580 None:intergenic
CATCCCAGCAGTGACTTGTT+TGG 0.326413 7.2:+34949706 MS.gene77362:CDS
TCAATTCTTGTTCCCTATCA+TGG 0.336107 7.2:+34949002 MS.gene77362:CDS
TCTTAAATTTCATTCTGATT+TGG 0.337793 7.2:-34950949 None:intergenic
CTTAATCTTCCATGGCAACT+TGG 0.368742 7.2:+34948099 None:intergenic
CCTAATCTTAACAGTGTTGT+TGG 0.371102 7.2:+34948963 MS.gene77362:CDS
AGTCACTGCTGGGATGGAAA+TGG 0.376732 7.2:-34949699 None:intergenic
GCTATGGTGGCATTGCTTGT+AGG 0.377173 7.2:+34949775 MS.gene77362:CDS
CCAACAACACTGTTAAGATT+AGG 0.378693 7.2:-34948963 None:intergenic
TTATCACTTCAACAGCTTGT+TGG 0.386279 7.2:+34949749 MS.gene77362:CDS
TAAAGCATGAGTAATGGAAT+TGG 0.386548 7.2:-34949817 None:intergenic
TCTTTCACCCAACAATGCTT+TGG 0.388930 7.2:-34948425 None:intergenic
ATGCAGTGGGCCAGAAGTCC+TGG 0.395799 7.2:+34949664 MS.gene77362:intron
CACTAATTTCAGAATCTGTT+TGG 0.396613 7.2:-34950920 None:intergenic
CAGCAATTCCAAAGCATTGT+TGG 0.398283 7.2:+34948417 MS.gene77362:CDS
CATAACATACCATCCATGAT+AGG 0.399195 7.2:-34949015 None:intergenic
TGAATGTGAGTACTCCTTTG+AGG 0.406114 7.2:+34948300 MS.gene77362:CDS
GTAGGATTGGGATTTGCAAT+TGG 0.408376 7.2:+34949793 MS.gene77362:CDS
GTGGCATTGCTTGTAGGATT+GGG 0.423209 7.2:+34949781 MS.gene77362:CDS
CAAACAGATTCTGAAATTAG+TGG 0.428433 7.2:+34950921 MS.gene77362:CDS
ATTGTTGGGTGAAAGATTCA+TGG 0.438978 7.2:+34948432 MS.gene77362:CDS
GAGGCAGCAAGGCCTGTGTT+TGG 0.442475 7.2:+34950780 MS.gene77362:CDS
GAATGTGAGTACTCCTTTGA+GGG 0.443614 7.2:+34948301 MS.gene77362:CDS
TAGGAATGGAGCTATCTTAG+AGG 0.444853 7.2:+34950546 MS.gene77362:intron
AGGTGATAGTGTGGAATTTG+AGG 0.461549 7.2:-34950654 None:intergenic
GTCACTGCTGGGATGGAAAT+GGG 0.462406 7.2:-34949698 None:intergenic
GGTGGCATTGCTTGTAGGAT+TGG 0.463654 7.2:+34949780 MS.gene77362:CDS
GCCAGAAGTCCTGGGAAGAC+TGG 0.465518 7.2:+34949673 MS.gene77362:CDS
AATTGAACAAGAACATGAAC+AGG 0.467947 7.2:+34948331 MS.gene77362:CDS
AACAGCTTGTTGGACTGCTA+TGG 0.468385 7.2:+34949759 MS.gene77362:CDS
AGCAATTCCAAAGCATTGTT+GGG 0.468648 7.2:+34948418 MS.gene77362:CDS
ACAAGAACATGAACAGGAAC+AGG 0.468800 7.2:+34948337 MS.gene77362:CDS
TATACAGGAGAATTAGTCAT+AGG 0.472631 7.2:+34949124 MS.gene77362:intron
GTATTTCCAAAACCAAGAAC+AGG 0.474801 7.2:+34948158 MS.gene77362:CDS
CCTCTTTATTGGGCTGCTCA+AGG 0.476332 7.2:+34948542 MS.gene77362:CDS
TGGACCAAACAAGTCACTGC+TGG 0.478611 7.2:-34949710 None:intergenic
GTGACTTACTTGCACCATCA+TGG 0.478921 7.2:+34949978 MS.gene77362:CDS
AATTCTCCAATAAGGTGAAA+AGG 0.487740 7.2:-34950840 None:intergenic
AATAACATTCACCATGACAT+TGG 0.490823 7.2:+34950606 MS.gene77362:CDS
ATTTATAAGGAGTTTGAAGA+GGG 0.494144 7.2:+34950860 MS.gene77362:CDS
TTAATCTTCCATGGCAACTT+GGG 0.497357 7.2:+34948100 None:intergenic
GAGATGAAACTTACAACATA+CGG 0.502661 7.2:-34949847 None:intergenic
CTATTGACCGCGATTATGGA+TGG 0.507864 7.2:+34950580 MS.gene77362:CDS
GAGTTACCAGAGTTTGATCC+TGG 0.511019 7.2:+34948359 MS.gene77362:CDS
GGTGATAGTGTGGAATTTGA+GGG 0.516178 7.2:-34950653 None:intergenic
GGATATGCAAGCAATGGAAA+AGG 0.519991 7.2:-34949538 None:intergenic
AGGACTCATCACCAGAATCA+TGG 0.529486 7.2:+34949144 MS.gene77362:CDS
TGTTGTGTCCAACAATTCAA+AGG 0.531174 7.2:+34948184 MS.gene77362:CDS
AAATGACGAGTCTTGGCATC+CGG 0.531545 7.2:+34949176 MS.gene77362:CDS
TTCACCACCACCATTTACAT+TGG 0.537892 7.2:+34948382 MS.gene77362:CDS
CCTTGAGCAGCCCAATAAAG+AGG 0.538687 7.2:-34948542 None:intergenic
TTCTTGTTCCCTATCATGGA+TGG 0.540256 7.2:+34949006 MS.gene77362:CDS
TGATAAAACCCAAGTTGCCA+TGG 0.540293 7.2:-34948108 None:intergenic
GACAAATTACCTTGGTATCG+TGG 0.541472 7.2:+34950008 MS.gene77362:CDS
ATGTTGAAAATGACGAGTCT+TGG 0.543891 7.2:+34949169 MS.gene77362:CDS
CCAATAAGGTGAAAAGGAAG+AGG 0.544622 7.2:-34950834 None:intergenic
AATTTATAAGGAGTTTGAAG+AGG 0.554530 7.2:+34950859 MS.gene77362:CDS
AAATGGGAACCAGTCTTCCC+AGG 0.559704 7.2:-34949682 None:intergenic
TCAATTGAATCAACCCTCAA+AGG 0.560368 7.2:-34948314 None:intergenic
ACTCCATAAAGCATGAGTAA+TGG 0.560961 7.2:-34949823 None:intergenic
CAAACAAGTCACTGCTGGGA+TGG 0.566530 7.2:-34949705 None:intergenic
GGACCAAACAAGTCACTGCT+GGG 0.570996 7.2:-34949709 None:intergenic
GTAAATGGTGGTGGTGAACC+AGG 0.571749 7.2:-34948377 None:intergenic
TTTAAGGAGAAGAGAAAATG+GGG 0.572531 7.2:+34948275 MS.gene77362:CDS
GTTTGCAGACTGAGGCAGCA+AGG 0.573397 7.2:+34950769 MS.gene77362:intron
TTTGGAAATACTGGAGCAAG+TGG 0.574925 7.2:-34948146 None:intergenic
TGCAGTGGGCCAGAAGTCCT+GGG 0.574948 7.2:+34949665 MS.gene77362:intron
TACACAGGATATGCAAGCAA+TGG 0.581321 7.2:-34949544 None:intergenic
GATCATTATGTTAGTGACAC+TGG 0.582898 7.2:+34950882 MS.gene77362:CDS
AGATACTCACAGCTTCAACT+AGG 0.590574 7.2:-34950674 None:intergenic
AGTGTGGAATTTGAGGGAAA+AGG 0.599823 7.2:-34950647 None:intergenic
TTGTAATATTCTCCAAACAC+AGG 0.600552 7.2:-34950792 None:intergenic
ATAACATACCATCCATGATA+GGG 0.602383 7.2:-34949014 None:intergenic
GAATGGAGCTATCTTAGAGG+TGG 0.607399 7.2:+34950549 MS.gene77362:CDS
ATTACCTTGGTATCGTGGAA+AGG 0.611215 7.2:+34950013 MS.gene77362:CDS
GTCATGAAGACAAATTACCT+TGG 0.612404 7.2:+34950000 MS.gene77362:CDS
GGTGAACCAGGATCAAACTC+TGG 0.614380 7.2:-34948365 None:intergenic
AGCTTGTTGGACTGCTATGG+TGG 0.619826 7.2:+34949762 MS.gene77362:CDS
GCTTCAACTAGGTGATAGTG+TGG 0.622119 7.2:-34950663 None:intergenic
TCAGCCAATGTAAATGGTGG+TGG 0.634606 7.2:-34948386 None:intergenic
TGACATGAGTTCCAATGTCA+TGG 0.641062 7.2:-34950617 None:intergenic
AAATAACTTACAAGGTACAC+AGG 0.642457 7.2:-34949559 None:intergenic
ATTTGTCTTCATGACCATGA+TGG 0.654713 7.2:-34949992 None:intergenic
AGTACCTTTCCACGATACCA+AGG 0.662444 7.2:-34950017 None:intergenic
ATATCAGCCAATGTAAATGG+TGG 0.666664 7.2:-34948389 None:intergenic
TATTAATCCATCCATAATCG+CGG 0.702360 7.2:-34950587 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATATGTAAACAAAAAT+CGG - chr7.2:34950511-34950530 None:intergenic 10.0%
!!! ATTTTAATATTAATTAGTTC+TGG + chr7.2:34949607-34949626 MS.gene77362:intron 10.0%
!! AATATTGTTAAATGAGAAAA+TGG - chr7.2:34949402-34949421 None:intergenic 15.0%
!! TAGTATAAAATATTGTCAAA+CGG - chr7.2:34948740-34948759 None:intergenic 15.0%
!!! ACATTTGTATTAGAATTTTA+AGG - chr7.2:34949441-34949460 None:intergenic 15.0%
!! AAATTCTAGTCAAAATTTGT+AGG - chr7.2:34949591-34949610 None:intergenic 20.0%
!! AGTTGACAGAAAAAATATTT+AGG + chr7.2:34949476-34949495 MS.gene77362:intron 20.0%
!! TTGTAAACGCAATTTAAAAA+AGG + chr7.2:34949322-34949341 MS.gene77362:intron 20.0%
!!! AATTCAAAGGCTAAATTTTT+AGG + chr7.2:34948197-34948216 MS.gene77362:CDS 20.0%
!!! ACCAAAAAGTTTTGATTTTA+AGG + chr7.2:34948259-34948278 MS.gene77362:CDS 20.0%
!!! CTTACTTAATTTTTTTGCTA+TGG + chr7.2:34948838-34948857 MS.gene77362:intron 20.0%
!!! TCCTTAAAATCAAAACTTTT+TGG - chr7.2:34948263-34948282 None:intergenic 20.0%
!!! TTAATCTTTATCTGTTGATT+AGG + chr7.2:34950527-34950546 MS.gene77362:intron 20.0%
!!! TTTGATTTTGATTGTTGTTT+TGG + chr7.2:34948906-34948925 MS.gene77362:intron 20.0%
!!! TTTTAATTTTCATTAGACGT+CGG + chr7.2:34949352-34949371 MS.gene77362:intron 20.0%
! AATTTATAAGGAGTTTGAAG+AGG + chr7.2:34950859-34950878 MS.gene77362:CDS 25.0%
! ACCTTATTGGAGAATTTATA+AGG + chr7.2:34950847-34950866 MS.gene77362:CDS 25.0%
! AGAAAAAATATTTAGGAGCT+TGG + chr7.2:34949483-34949502 MS.gene77362:CDS 25.0%
! ATTTATAAGGAGTTTGAAGA+GGG + chr7.2:34950860-34950879 MS.gene77362:CDS 25.0%
! TATGTTTACCTTGATTATAC+AGG + chr7.2:34949109-34949128 MS.gene77362:intron 25.0%
! TATTGGATCAATGTACAATT+GGG - chr7.2:34950111-34950130 None:intergenic 25.0%
! TCCTTATAAATTCTCCAATA+AGG - chr7.2:34950851-34950870 None:intergenic 25.0%
! TTATTGGATCAATGTACAAT+TGG - chr7.2:34950112-34950131 None:intergenic 25.0%
! TTCAGTCAAATATCAGATAT+TGG + chr7.2:34950083-34950102 MS.gene77362:intron 25.0%
! TTCTTAATAATTGGATGGTT+TGG + chr7.2:34948519-34948538 MS.gene77362:CDS 25.0%
! TTGTCGATAGTAGAAAATAA+CGG + chr7.2:34948666-34948685 MS.gene77362:intron 25.0%
!! AAATTTAGCCTTTGAATTGT+TGG - chr7.2:34948195-34948214 None:intergenic 25.0%
!! ATTTAGAGCAAAGTCAAATT+AGG - chr7.2:34949929-34949948 None:intergenic 25.0%
!! CATGAATTTTCATTAGATGT+CGG - chr7.2:34949281-34949300 None:intergenic 25.0%
!! TGCTTTTCTTAATAATTGGA+TGG + chr7.2:34948514-34948533 MS.gene77362:CDS 25.0%
!!! AGAGATGTTGTTATTGTTTT+TGG + chr7.2:34948476-34948495 MS.gene77362:CDS 25.0%
!!! AGTGATTTGTTTTTCTAGTT+AGG + chr7.2:34950724-34950743 MS.gene77362:intron 25.0%
!!! ATATTAATTAGTTCTGGTAG+AGG + chr7.2:34949613-34949632 MS.gene77362:intron 25.0%
!!! ATTTTAAGGAGAAGAGAAAA+TGG + chr7.2:34948273-34948292 MS.gene77362:CDS 25.0%
!!! TCTCTTTTTCATTGATCAAT+TGG + chr7.2:34949866-34949885 MS.gene77362:intron 25.0%
!!! TGTTGTTATTGTTTTTGGTT+TGG + chr7.2:34948481-34948500 MS.gene77362:CDS 25.0%
!!! TTTTAAGGAGAAGAGAAAAT+GGG + chr7.2:34948274-34948293 MS.gene77362:CDS 25.0%
AAATAACTTACAAGGTACAC+AGG - chr7.2:34949562-34949581 None:intergenic 30.0%
AATAACATTCACCATGACAT+TGG + chr7.2:34950606-34950625 MS.gene77362:CDS 30.0%
AATCATGACCAAGAACAAAA+AGG - chr7.2:34948583-34948602 None:intergenic 30.0%
AATTCTCCAATAAGGTGAAA+AGG - chr7.2:34950843-34950862 None:intergenic 30.0%
AATTGAACAAGAACATGAAC+AGG + chr7.2:34948331-34948350 MS.gene77362:CDS 30.0%
ATAACATACCATCCATGATA+GGG - chr7.2:34949017-34949036 None:intergenic 30.0%
ATCATGACCAAGAACAAAAA+GGG - chr7.2:34948582-34948601 None:intergenic 30.0%
ATTCCATTACTCATGCTTTA+TGG + chr7.2:34949820-34949839 MS.gene77362:CDS 30.0%
CACTAATTTCAGAATCTGTT+TGG - chr7.2:34950923-34950942 None:intergenic 30.0%
CTAATTCTCCTGTATAATCA+AGG - chr7.2:34949120-34949139 None:intergenic 30.0%
CTCTATCTTAGTTGAAACAA+TGG + chr7.2:34950695-34950714 MS.gene77362:intron 30.0%
CTTATATCAGCCAATGTAAA+TGG - chr7.2:34948395-34948414 None:intergenic 30.0%
GAGATGAAACTTACAACATA+CGG - chr7.2:34949850-34949869 None:intergenic 30.0%
GGCACAATAAATAACTTACA+AGG - chr7.2:34949570-34949589 None:intergenic 30.0%
TATACAGGAGAATTAGTCAT+AGG + chr7.2:34949124-34949143 MS.gene77362:intron 30.0%
TATTAATCCATCCATAATCG+CGG - chr7.2:34950590-34950609 None:intergenic 30.0%
TTAATCCAACAGACGAAATA+TGG + chr7.2:34950439-34950458 MS.gene77362:intron 30.0%
TTGTAATATTCTCCAAACAC+AGG - chr7.2:34950795-34950814 None:intergenic 30.0%
TTTAAGGAGAAGAGAAAATG+GGG + chr7.2:34948275-34948294 MS.gene77362:CDS 30.0%
! AATTGAAGGTTTTTGTGATG+TGG + chr7.2:34949946-34949965 MS.gene77362:intron 30.0%
! ATAACATCCTTTTTCTCACT+TGG - chr7.2:34949733-34949752 None:intergenic 30.0%
! CTTTATCTGTTGATTAGGAA+TGG + chr7.2:34950532-34950551 MS.gene77362:intron 30.0%
! TAAAGCATGAGTAATGGAAT+TGG - chr7.2:34949820-34949839 None:intergenic 30.0%
! TTGACTTTGCTCTAAATTGA+AGG + chr7.2:34949932-34949951 MS.gene77362:intron 30.0%
! TTTTCATTGATCAATTGGCA+TGG + chr7.2:34949871-34949890 MS.gene77362:intron 30.0%
! TTTTTGTTCTTGGTCATGAT+TGG + chr7.2:34948582-34948601 MS.gene77362:CDS 30.0%
!! CAAACAGATTCTGAAATTAG+TGG + chr7.2:34950921-34950940 MS.gene77362:CDS 30.0%
!! TTTTGCTATGGTTGACTTTT+GGG + chr7.2:34948850-34948869 MS.gene77362:intron 30.0%
!! TTTTTGCTATGGTTGACTTT+TGG + chr7.2:34948849-34948868 MS.gene77362:intron 30.0%
!!! ATTGGCATGGTTTTAGTTTT+TGG + chr7.2:34949884-34949903 MS.gene77362:intron 30.0%
!!! CTGCTGCTTTTCTTAATAAT+TGG + chr7.2:34948510-34948529 MS.gene77362:CDS 30.0%
!!! TGTTGTTTTGGAATTTTCAG+TGG + chr7.2:34948918-34948937 MS.gene77362:intron 30.0%
!!! TTTTTGGTTTGTAGATGTGT+CGG + chr7.2:34950169-34950188 MS.gene77362:intron 30.0%
ACAGTCAAGATTTGACTGAA+TGG - chr7.2:34950293-34950312 None:intergenic 35.0%
ACTCCATAAAGCATGAGTAA+TGG - chr7.2:34949826-34949845 None:intergenic 35.0%
AGAGAATGTTATCTTCTCAC+CGG - chr7.2:34949198-34949217 None:intergenic 35.0%
ATATCAGCCAATGTAAATGG+TGG - chr7.2:34948392-34948411 None:intergenic 35.0%
ATGTTGAAAATGACGAGTCT+TGG + chr7.2:34949169-34949188 MS.gene77362:CDS 35.0%
ATTGTTGGGTGAAAGATTCA+TGG + chr7.2:34948432-34948451 MS.gene77362:CDS 35.0%
ATTTGTCTTCATGACCATGA+TGG - chr7.2:34949995-34950014 None:intergenic 35.0%
CAAACCAAAAAACACATTGG+TGG - chr7.2:34950269-34950288 None:intergenic 35.0%
CAAATCTTGACTGTTTGATG+AGG + chr7.2:34950299-34950318 MS.gene77362:intron 35.0%
CAGTCGAAACTTTGACTAAA+TGG - chr7.2:34950401-34950420 None:intergenic 35.0%
CAGTGCAGTAAAGTCATATT+TGG - chr7.2:34950325-34950344 None:intergenic 35.0%
CATAACATACCATCCATGAT+AGG - chr7.2:34949018-34949037 None:intergenic 35.0%
CCAACAACACTGTTAAGATT+AGG - chr7.2:34948966-34948985 None:intergenic 35.0%
CCTAATCTTAACAGTGTTGT+TGG + chr7.2:34948963-34948982 MS.gene77362:CDS 35.0%
CTAGTCTGTACAGTCATATT+TGG - chr7.2:34950245-34950264 None:intergenic 35.0%
GATCATTATGTTAGTGACAC+TGG + chr7.2:34950882-34950901 MS.gene77362:CDS 35.0%
GGACAAACCAAAAAACACAT+TGG - chr7.2:34950272-34950291 None:intergenic 35.0%
GTATTTCCAAAACCAAGAAC+AGG + chr7.2:34948158-34948177 MS.gene77362:CDS 35.0%
GTCATGAAGACAAATTACCT+TGG + chr7.2:34950000-34950019 MS.gene77362:CDS 35.0%
GTTTACAAAGTACGCTTACA+TGG - chr7.2:34949310-34949329 None:intergenic 35.0%
TACAGTCATATTTGGCCTAT+CGG - chr7.2:34950237-34950256 None:intergenic 35.0%
TCAATTCTTGTTCCCTATCA+TGG + chr7.2:34949002-34949021 MS.gene77362:CDS 35.0%
TCAATTGAATCAACCCTCAA+AGG - chr7.2:34948317-34948336 None:intergenic 35.0%
TGTTGTGTCCAACAATTCAA+AGG + chr7.2:34948184-34948203 MS.gene77362:CDS 35.0%
TGTTGTTCTTTGAATGCAGT+GGG + chr7.2:34949651-34949670 MS.gene77362:intron 35.0%
TTAGTCAAAGTTTCGACTGT+TGG + chr7.2:34950402-34950421 MS.gene77362:intron 35.0%
TTATCACTTCAACAGCTTGT+TGG + chr7.2:34949749-34949768 MS.gene77362:CDS 35.0%
TTGATCCAATAAGCGAGATA+TGG + chr7.2:34950120-34950139 MS.gene77362:intron 35.0%
! ACAAAACCTGTTCTTGGTTT+TGG - chr7.2:34948167-34948186 None:intergenic 35.0%
! TGCTCAAGGAACTATGTTTT+GGG + chr7.2:34948556-34948575 MS.gene77362:CDS 35.0%
! TTGTTCAAATTTTGCTACGC+AGG + chr7.2:34948690-34948709 MS.gene77362:intron 35.0%
! TTGTTGTTCTTTGAATGCAG+TGG + chr7.2:34949650-34949669 MS.gene77362:intron 35.0%
! TTTTGTGATGTGGTTGGATT+TGG + chr7.2:34949956-34949975 MS.gene77362:CDS 35.0%
!! AAGACTCGTCATTTTCAACA+TGG - chr7.2:34949170-34949189 None:intergenic 35.0%
!! ACTTGGGTTTTATCAGAATG+TGG + chr7.2:34948116-34948135 MS.gene77362:CDS 35.0%
!! AGCAATTCCAAAGCATTGTT+GGG + chr7.2:34948418-34948437 MS.gene77362:CDS 35.0%
!! TTTGGAATTTTCAGTGGTCA+TGG + chr7.2:34948924-34948943 MS.gene77362:intron 35.0%
!!! GACTTTTGGGTTGTAGAATT+TGG + chr7.2:34948863-34948882 MS.gene77362:intron 35.0%
!!! GTTCTTGGTTTTGGAAATAC+TGG - chr7.2:34948158-34948177 None:intergenic 35.0%
!!! TAGACCACCAATGTGTTTTT+TGG + chr7.2:34950262-34950281 MS.gene77362:intron 35.0%
AAAAGACTCTACTGCTACAG+AGG - chr7.2:34950064-34950083 None:intergenic 40.0%
ACAAGAACATGAACAGGAAC+AGG + chr7.2:34948337-34948356 MS.gene77362:CDS 40.0%
ACTACTATTGACCGCGATTA+TGG + chr7.2:34950576-34950595 MS.gene77362:CDS 40.0%
AGATACTCACAGCTTCAACT+AGG - chr7.2:34950677-34950696 None:intergenic 40.0%
AGTGTGGAATTTGAGGGAAA+AGG - chr7.2:34950650-34950669 None:intergenic 40.0%
ATATTTGGCCTATCGGATCA+AGG - chr7.2:34950230-34950249 None:intergenic 40.0%
ATGACTTTACTGCACTGAGA+CGG + chr7.2:34950328-34950347 MS.gene77362:intron 40.0%
ATGAGAAAATGGCACATGCA+CGG - chr7.2:34949391-34949410 None:intergenic 40.0%
ATTACCTTGGTATCGTGGAA+AGG + chr7.2:34950013-34950032 MS.gene77362:CDS 40.0%
CAATTGTACCTTGATCCGAT+AGG + chr7.2:34950219-34950238 MS.gene77362:intron 40.0%
CCAATAAGGTGAAAAGGAAG+AGG - chr7.2:34950837-34950856 None:intergenic 40.0%
CGAGATATGGCTACATTGAT+CGG + chr7.2:34950133-34950152 MS.gene77362:intron 40.0%
GAATGTGAGTACTCCTTTGA+GGG + chr7.2:34948301-34948320 MS.gene77362:CDS 40.0%
GACAAATTACCTTGGTATCG+TGG + chr7.2:34950008-34950027 MS.gene77362:CDS 40.0%
GACACAACAAAACCTGTTCT+TGG - chr7.2:34948173-34948192 None:intergenic 40.0%
GGATATGCAAGCAATGGAAA+AGG - chr7.2:34949541-34949560 None:intergenic 40.0%
GTAGGATTGGGATTTGCAAT+TGG + chr7.2:34949793-34949812 MS.gene77362:CDS 40.0%
GTTTGGTCCAAGTGAGAAAA+AGG + chr7.2:34949723-34949742 MS.gene77362:CDS 40.0%
TACACAGGATATGCAAGCAA+TGG - chr7.2:34949547-34949566 None:intergenic 40.0%
TAGGAATGGAGCTATCTTAG+AGG + chr7.2:34950546-34950565 MS.gene77362:intron 40.0%
TCTTTCACCCAACAATGCTT+TGG - chr7.2:34948428-34948447 None:intergenic 40.0%
TGAATGTGAGTACTCCTTTG+AGG + chr7.2:34948300-34948319 MS.gene77362:CDS 40.0%
TGACATGAGTTCCAATGTCA+TGG - chr7.2:34950620-34950639 None:intergenic 40.0%
TGTAGCCATATCTCGCTTAT+TGG - chr7.2:34950128-34950147 None:intergenic 40.0%
TTCACCACCACCATTTACAT+TGG + chr7.2:34948382-34948401 MS.gene77362:CDS 40.0%
TTCTTGTTCCCTATCATGGA+TGG + chr7.2:34949006-34949025 MS.gene77362:CDS 40.0%
TTTCAACATGGCCATGATTC+TGG - chr7.2:34949158-34949177 None:intergenic 40.0%
TTTGGAAATACTGGAGCAAG+TGG - chr7.2:34948149-34948168 None:intergenic 40.0%
! AGGTGATAGTGTGGAATTTG+AGG - chr7.2:34950657-34950676 None:intergenic 40.0%
! CCTCTTCCTTTTCACCTTAT+TGG + chr7.2:34950834-34950853 MS.gene77362:CDS 40.0%
! CTGCTCAAGGAACTATGTTT+TGG + chr7.2:34948555-34948574 MS.gene77362:CDS 40.0%
! GAAGGTTTTTGTGATGTGGT+TGG + chr7.2:34949950-34949969 MS.gene77362:intron 40.0%
! GATGGTTTGGCCTCTTTATT+GGG + chr7.2:34948532-34948551 MS.gene77362:CDS 40.0%
! GGTGATAGTGTGGAATTTGA+GGG - chr7.2:34950656-34950675 None:intergenic 40.0%
! TTTTGGGCCCTTTTTGTTCT+TGG + chr7.2:34948572-34948591 MS.gene77362:CDS 40.0%
!! CAGCAATTCCAAAGCATTGT+TGG + chr7.2:34948417-34948436 MS.gene77362:CDS 40.0%
!! TTTGCTTTGTTTGCAGACTG+AGG + chr7.2:34950761-34950780 MS.gene77362:intron 40.0%
AAATGACGAGTCTTGGCATC+CGG + chr7.2:34949176-34949195 MS.gene77362:CDS 45.0%
AGGACTCATCACCAGAATCA+TGG + chr7.2:34949144-34949163 MS.gene77362:CDS 45.0%
AGTACCTTTCCACGATACCA+AGG - chr7.2:34950020-34950039 None:intergenic 45.0%
CTATTGACCGCGATTATGGA+TGG + chr7.2:34950580-34950599 MS.gene77362:CDS 45.0%
GAATGGAGCTATCTTAGAGG+TGG + chr7.2:34950549-34950568 MS.gene77362:CDS 45.0%
GAGTTACCAGAGTTTGATCC+TGG + chr7.2:34948359-34948378 MS.gene77362:CDS 45.0%
GTGACTTACTTGCACCATCA+TGG + chr7.2:34949978-34949997 MS.gene77362:CDS 45.0%
GTGGCATTGCTTGTAGGATT+GGG + chr7.2:34949781-34949800 MS.gene77362:CDS 45.0%
TCAGCCAATGTAAATGGTGG+TGG - chr7.2:34948389-34948408 None:intergenic 45.0%
TGACTTTACTGCACTGAGAC+GGG + chr7.2:34950329-34950348 MS.gene77362:intron 45.0%
! GCTTCAACTAGGTGATAGTG+TGG - chr7.2:34950666-34950685 None:intergenic 45.0%
! GGAAGAGGAGCTGATTTCTT+TGG - chr7.2:34950822-34950841 None:intergenic 45.0%
! GGATGGTTTGGCCTCTTTAT+TGG + chr7.2:34948531-34948550 MS.gene77362:CDS 45.0%
!! AACAGCTTGTTGGACTGCTA+TGG + chr7.2:34949759-34949778 MS.gene77362:CDS 45.0%
!!! CGGATGACTGCTAGTCTTTT+TGG + chr7.2:34950153-34950172 MS.gene77362:intron 45.0%
AAATGGGAACCAGTCTTCCC+AGG - chr7.2:34949685-34949704 None:intergenic 50.0%
AGTCACTGCTGGGATGGAAA+TGG - chr7.2:34949702-34949721 None:intergenic 50.0%
CAAACAAGTCACTGCTGGGA+TGG - chr7.2:34949708-34949727 None:intergenic 50.0%
CAGACGAAATATGGCCGCAT+TGG + chr7.2:34950448-34950467 MS.gene77362:intron 50.0%
CCTCTTTATTGGGCTGCTCA+AGG + chr7.2:34948542-34948561 MS.gene77362:CDS 50.0%
CCTTGAGCAGCCCAATAAAG+AGG - chr7.2:34948545-34948564 None:intergenic 50.0%
GCTATGGTGGCATTGCTTGT+AGG + chr7.2:34949775-34949794 MS.gene77362:CDS 50.0%
GGACCAAACAAGTCACTGCT+GGG - chr7.2:34949712-34949731 None:intergenic 50.0%
GGTGAACCAGGATCAAACTC+TGG - chr7.2:34948368-34948387 None:intergenic 50.0%
GGTGGCATTGCTTGTAGGAT+TGG + chr7.2:34949780-34949799 MS.gene77362:CDS 50.0%
GTCACTGCTGGGATGGAAAT+GGG - chr7.2:34949701-34949720 None:intergenic 50.0%
TGCGGCCATATTTCGTCTGT+TGG - chr7.2:34950447-34950466 None:intergenic 50.0%
TGGACCAAACAAGTCACTGC+TGG - chr7.2:34949713-34949732 None:intergenic 50.0%
! CGAAATATGGCCGCATTGGT+TGG + chr7.2:34950452-34950471 MS.gene77362:intron 50.0%
!! AGCTTGTTGGACTGCTATGG+TGG + chr7.2:34949762-34949781 MS.gene77362:CDS 50.0%
!! ATATGGCCGCATTGGTTGGA+CGG + chr7.2:34950456-34950475 MS.gene77362:intron 50.0%
!! CATCCCAGCAGTGACTTGTT+TGG + chr7.2:34949706-34949725 MS.gene77362:CDS 50.0%
!! GTAAATGGTGGTGGTGAACC+AGG - chr7.2:34948380-34948399 None:intergenic 50.0%
ACCAGTCTTCCCAGGACTTC+TGG - chr7.2:34949677-34949696 None:intergenic 55.0%
GTTTGCAGACTGAGGCAGCA+AGG + chr7.2:34950769-34950788 MS.gene77362:intron 55.0%
TTGCAGCCGTCCAACCAATG+CGG - chr7.2:34950465-34950484 None:intergenic 55.0%
ATGCAGTGGGCCAGAAGTCC+TGG + chr7.2:34949664-34949683 MS.gene77362:intron 60.0%
GAGGCAGCAAGGCCTGTGTT+TGG + chr7.2:34950780-34950799 MS.gene77362:CDS 60.0%
GCCAGAAGTCCTGGGAAGAC+TGG + chr7.2:34949673-34949692 MS.gene77362:CDS 60.0%
TGCAGTGGGCCAGAAGTCCT+GGG + chr7.2:34949665-34949684 MS.gene77362:intron 60.0%
! CTGAGACGGGCATCGCTAAC+TGG + chr7.2:34950342-34950361 MS.gene77362:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 34948110 34950962 34948110 ID=MS.gene77362
chr7.2 mRNA 34948110 34950962 34948110 ID=MS.gene77362.t1;Parent=MS.gene77362
chr7.2 exon 34948110 34948603 34948110 ID=MS.gene77362.t1.exon1;Parent=MS.gene77362.t1
chr7.2 CDS 34948110 34948603 34948110 ID=cds.MS.gene77362.t1;Parent=MS.gene77362.t1
chr7.2 exon 34948938 34949027 34948938 ID=MS.gene77362.t1.exon2;Parent=MS.gene77362.t1
chr7.2 CDS 34948938 34949027 34948938 ID=cds.MS.gene77362.t1;Parent=MS.gene77362.t1
chr7.2 exon 34949131 34949197 34949131 ID=MS.gene77362.t1.exon3;Parent=MS.gene77362.t1
chr7.2 CDS 34949131 34949197 34949131 ID=cds.MS.gene77362.t1;Parent=MS.gene77362.t1
chr7.2 exon 34949478 34949570 34949478 ID=MS.gene77362.t1.exon4;Parent=MS.gene77362.t1
chr7.2 CDS 34949478 34949570 34949478 ID=cds.MS.gene77362.t1;Parent=MS.gene77362.t1
chr7.2 exon 34949670 34949855 34949670 ID=MS.gene77362.t1.exon5;Parent=MS.gene77362.t1
chr7.2 CDS 34949670 34949855 34949670 ID=cds.MS.gene77362.t1;Parent=MS.gene77362.t1
chr7.2 exon 34949954 34950034 34949954 ID=MS.gene77362.t1.exon6;Parent=MS.gene77362.t1
chr7.2 CDS 34949954 34950034 34949954 ID=cds.MS.gene77362.t1;Parent=MS.gene77362.t1
chr7.2 exon 34950549 34950686 34950549 ID=MS.gene77362.t1.exon7;Parent=MS.gene77362.t1
chr7.2 CDS 34950549 34950686 34950549 ID=cds.MS.gene77362.t1;Parent=MS.gene77362.t1
chr7.2 exon 34950777 34950962 34950777 ID=MS.gene77362.t1.exon8;Parent=MS.gene77362.t1
chr7.2 CDS 34950777 34950962 34950777 ID=cds.MS.gene77362.t1;Parent=MS.gene77362.t1
Gene Sequence

>MS.gene77362

ATGGCAACTTGGGTTTTATCAGAATGTGGTTTAAAGCCACTTGCTCCAGTATTTCCAAAACCAAGAACAGGTTTTGTTGTGTCCAACAATTCAAAGGCTAAATTTTTAGGCACTAACAAAGAAGTAACAAATCTGAAATTTCAATTTCAACCAAAAAGTTTTGATTTTAAGGAGAAGAGAAAATGGGGTTTGAATGTGAGTACTCCTTTGAGGGTTGATTCAATTGAACAAGAACATGAACAGGAACAGGAGTTACCAGAGTTTGATCCTGGTTCACCACCACCATTTACATTGGCTGATATAAGAGCAGCAATTCCAAAGCATTGTTGGGTGAAAGATTCATGGAAGTCAATGAGTTATGTTTTGAGAGATGTTGTTATTGTTTTTGGTTTGGCTGCTGCTGCTGCTTTTCTTAATAATTGGATGGTTTGGCCTCTTTATTGGGCTGCTCAAGGAACTATGTTTTGGGCCCTTTTTGTTCTTGGTCATGATTGGTAAATATTACTACTACAATTTTTGTTTTTTACTTCATTTTGTTTTTTACTTTTAATGATTGTTGTCGATAGTAGAAAATAACGGTTTGTTCAAATTTTGCTACGCAGGAGTGCTATAGCGCTGTTATAGTTACCGTTTGACAATATTTTATACTAAATAGTGTATTGCAGAATAATAACGATTTGTTCAAATTCTGCTACGTTATATGCGCTATATAACAATGTTTTGAATTACTTACTTAATTTTTTTGCTATGGTTGACTTTTGGGTTGTAGAATTTGGTTTTAAAATTGTGTCTTTTGTTTGATTTTGATTGTTGTTTTGGAATTTTCAGTGGTCATGGAAGCTTTTCAAGTAATCCTAATCTTAACAGTGTTGTTGGACATTTGTTACATTCTTCAATTCTTGTTCCCTATCATGGATGGTATGTTATGCTCTTAAAATATAAAAATATACTTCTCATTTTTCTGATTCACTATAGTTTCAAATTTATATTTGAAACTAATATGTTTACCTTGATTATACAGGAGAATTAGTCATAGGACTCATCACCAGAATCATGGCCATGTTGAAAATGACGAGTCTTGGCATCCGGTGAGAAGATAACATTCTCTATTTAAGTTATTAAGAATAGATTTACTAGAGATGCACTATCAGTGTAAATTAGTTTTATACCGACATCTAATGAAAATTCATGATATTGCCATGTAAGCGTACTTTGTAAACGCAATTTAAAAAAGGCAAAGTGTTTTAATTTTCATTAGACGTCGGTGTAGAATTAAAACCGTGCATGTGCCATTTTCTCATTTAACAATATTGTTAGTTTTCAATTTTCCTTAAAATTCTAATACAAATGTATTTGCTTATTTTGCAGTTGACAGAAAAAATATTTAGGAGCTTGGACAATGTGACACGTTCTTTAAGATTTACAGCTCCTTTTCCATTGCTTGCATATCCTGTGTACCTTGTAAGTTATTTATTGTGCCTACAAATTTTGACTAGAATTTTAATATTAATTAGTTCTGGTAGAGGAATTGACTTAACTGTTGTTGTTCTTTGAATGCAGTGGGCCAGAAGTCCTGGGAAGACTGGTTCCCATTTCCATCCCAGCAGTGACTTGTTTGGTCCAAGTGAGAAAAAGGATGTTATCACTTCAACAGCTTGTTGGACTGCTATGGTGGCATTGCTTGTAGGATTGGGATTTGCAATTGGTCCAATTCCATTACTCATGCTTTATGGAGTTCCGTATGTTGTAAGTTTCATCTCTTTTTCATTGATCAATTGGCATGGTTTTAGTTTTTGGAATCAGTCATGAATGAAGTCCTAATTTGACTTTGCTCTAAATTGAAGGTTTTTGTGATGTGGTTGGATTTGGTGACTTACTTGCACCATCATGGTCATGAAGACAAATTACCTTGGTATCGTGGAAAGGTACTTTTATATACTTCAACTTGAATCCTCTGTAGCAGTAGAGTCTTTTTCAGTCAAATATCAGATATTGGATCCCAATTGTACATTGATCCAATAAGCGAGATATGGCTACATTGATCGGATGACTGCTAGTCTTTTTGGTTTGTAGATGTGTCGGATCAATCAAATTTCGATCGTTAGATTACAATTGTACCTTGATCCGATAGGCCAAATATGACTGTACAGACTAGACCACCAATGTGTTTTTTGGTTTGTCCATTCAGTCAAATCTTGACTGTTTGATGAGGCCAAATATGACTTTACTGCACTGAGACGGGCATCGCTAACTGGACGACAGATATACTTTTTGATTTGTTGACATGTCCATTTAGTCAAAGTTTCGACTGTTGGATTAAGATTGTACTTTAATCCAACAGACGAAATATGGCCGCATTGGTTGGACGGCTGCAATTCTTTTTTAATGTTTTCGTAATCCGATTTTTGTTTACATATTTAATCTTTATCTGTTGATTAGGAATGGAGCTATCTTAGAGGTGGACTTACTACTATTGACCGCGATTATGGATGGATTAATAACATTCACCATGACATTGGAACTCATGTCATTCATCACCTTTTCCCTCAAATTCCACACTATCACCTAGTTGAAGCTGTGAGTATCTCTATCTTAGTTGAAACAATGGATATATAGTGATTTGTTTTTCTAGTTAGGAGTTTGAATTTTTCTTTGCTTTGTTTGCAGACTGAGGCAGCAAGGCCTGTGTTTGGAGAATATTACAAAGAGCCAAAGAAATCAGCTCCTCTTCCTTTTCACCTTATTGGAGAATTTATAAGGAGTTTGAAGAGGGATCATTATGTTAGTGACACTGGTGATATTGTGTACTACCAAACAGATTCTGAAATTAGTGGCTCTTCCAAATCAGAATGA

Protein sequence

>MS.gene77362.t1

MATWVLSECGLKPLAPVFPKPRTGFVVSNNSKAKFLGTNKEVTNLKFQFQPKSFDFKEKRKWGLNVSTPLRVDSIEQEHEQEQELPEFDPGSPPPFTLADIRAAIPKHCWVKDSWKSMSYVLRDVVIVFGLAAAAAFLNNWMVWPLYWAAQGTMFWALFVLGHDCGHGSFSSNPNLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLTEKIFRSLDNVTRSLRFTAPFPLLAYPVYLWARSPGKTGSHFHPSSDLFGPSEKKDVITSTACWTAMVALLVGLGFAIGPIPLLMLYGVPYVVFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTIDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAARPVFGEYYKEPKKSAPLPFHLIGEFIRSLKRDHYVSDTGDIVYYQTDSEISGSSKSE