Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94675.t1 | XP_013449158.1 | 93.3 | 446 | 28 | 1 | 1 | 444 | 1 | 446 | 2.40E-252 | 880.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94675.t1 | P48621 | 78.7 | 456 | 82 | 4 | 1 | 444 | 1 | 453 | 1.3e-219 | 763.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94675.t1 | A0A072UBF9 | 93.3 | 446 | 28 | 1 | 1 | 444 | 1 | 446 | 1.7e-252 | 880.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017981 | MS.gene94675 | PPI |
| MS.gene94675 | MS.gene04619 | PPI |
| MS.gene94675 | MS.gene000112 | PPI |
| MS.gene94675 | MS.gene034496 | PPI |
| MS.gene94675 | MS.gene52655 | PPI |
| MS.gene072400 | MS.gene94675 | PPI |
| MS.gene94675 | MS.gene37076 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94675.t1 | MTR_7g068780 | 94.843 | 446 | 21 | 1 | 1 | 444 | 1 | 446 | 0.0 | 848 |
| MS.gene94675.t1 | MTR_4g015630 | 75.000 | 448 | 100 | 3 | 1 | 444 | 1 | 440 | 0.0 | 667 |
| MS.gene94675.t1 | MTR_7g068780 | 94.395 | 339 | 17 | 1 | 1 | 337 | 1 | 339 | 0.0 | 633 |
| MS.gene94675.t1 | MTR_5g071170 | 71.225 | 351 | 101 | 0 | 87 | 437 | 35 | 385 | 0.0 | 555 |
| MS.gene94675.t1 | MTR_3g464330 | 68.717 | 374 | 111 | 2 | 73 | 444 | 16 | 385 | 0.0 | 530 |
| MS.gene94675.t1 | MTR_7g093200 | 37.313 | 335 | 189 | 7 | 80 | 396 | 65 | 396 | 2.39e-63 | 211 |
| MS.gene94675.t1 | MTR_1g054035 | 35.714 | 336 | 197 | 6 | 76 | 395 | 13 | 345 | 3.69e-63 | 209 |
| MS.gene94675.t1 | MTR_1g111880 | 34.472 | 322 | 180 | 7 | 90 | 396 | 23 | 328 | 1.99e-53 | 183 |
| MS.gene94675.t1 | MTR_4g130980 | 28.443 | 334 | 223 | 8 | 69 | 397 | 75 | 397 | 2.83e-32 | 127 |
| MS.gene94675.t1 | MTR_2g460790 | 28.453 | 362 | 229 | 11 | 50 | 397 | 53 | 398 | 7.91e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94675.t1 | AT5G05580 | 70.203 | 443 | 119 | 3 | 1 | 440 | 1 | 433 | 0.0 | 657 |
| MS.gene94675.t1 | AT3G11170 | 69.526 | 443 | 133 | 2 | 1 | 442 | 1 | 442 | 0.0 | 646 |
| MS.gene94675.t1 | AT5G05580 | 71.134 | 388 | 99 | 3 | 1 | 385 | 1 | 378 | 0.0 | 575 |
| MS.gene94675.t1 | AT2G29980 | 65.365 | 384 | 128 | 2 | 63 | 444 | 4 | 384 | 0.0 | 525 |
| MS.gene94675.t1 | AT2G29980 | 63.636 | 275 | 97 | 1 | 63 | 337 | 4 | 275 | 1.16e-125 | 366 |
| MS.gene94675.t1 | AT3G12120 | 36.527 | 334 | 192 | 8 | 80 | 396 | 15 | 345 | 3.33e-65 | 214 |
| MS.gene94675.t1 | AT3G12120 | 36.527 | 334 | 192 | 8 | 80 | 396 | 15 | 345 | 3.33e-65 | 214 |
| MS.gene94675.t1 | AT4G30950 | 29.132 | 357 | 224 | 12 | 52 | 394 | 54 | 395 | 4.22e-33 | 130 |
Find 100 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATTACTCATGCTTTA+TGG | 0.109554 | 7.3:+36443927 | MS.gene94675:CDS |
| GGATGGTTTGGCCTCTTTAT+TGG | 0.161417 | 7.3:+36442636 | MS.gene94675:CDS |
| CTGCTCAAGGAACCATGTTT+TGG | 0.170227 | 7.3:+36442660 | MS.gene94675:CDS |
| GCAAAACCTGTTCTTGGTTT+TGG | 0.211562 | 7.3:-36442269 | None:intergenic |
| GATGGTTTGGCCTCTTTATT+GGG | 0.236131 | 7.3:+36442637 | MS.gene94675:CDS |
| TTCTTAATAATTGGATGGTT+TGG | 0.246549 | 7.3:+36442624 | MS.gene94675:CDS |
| GGAAGAGGAGCTGATTTCTT+TGG | 0.246608 | 7.3:-36444927 | None:intergenic |
| ACTACTATTGACCGCGATTA+TGG | 0.247284 | 7.3:+36444683 | MS.gene94675:CDS |
| GTTTGGTCCAAGTGAGAAAA+AGG | 0.260081 | 7.3:+36443830 | MS.gene94675:CDS |
| TTTCAACATGGCCATGATTC+TGG | 0.264541 | 7.3:-36443262 | None:intergenic |
| ACCTTATTGGAGAATTTATA+AGG | 0.270680 | 7.3:+36444955 | MS.gene94675:CDS |
| ACCAGTCTTCCCAGGACTTC+TGG | 0.274716 | 7.3:-36443781 | None:intergenic |
| TCCTTAAAATCACAAGCTTT+TGG | 0.294485 | 7.3:-36442365 | None:intergenic |
| CTTATATCAGCCAATGTAAA+TGG | 0.296570 | 7.3:-36442497 | None:intergenic |
| TCCTTATAAATTCTCCAATA+AGG | 0.310337 | 7.3:-36444956 | None:intergenic |
| AAATTTAGCCTTTGAATTGT+TGG | 0.315210 | 7.3:-36442297 | None:intergenic |
| AATCATGACCAAGAACAAAA+AGG | 0.317453 | 7.3:-36442685 | None:intergenic |
| GACACAGCAAAACCTGTTCT+TGG | 0.325247 | 7.3:-36442275 | None:intergenic |
| CATCCCAGCAGTGACTTGTT+TGG | 0.326413 | 7.3:+36443813 | MS.gene94675:CDS |
| TCAATTCTTGTTCCCTATCA+TGG | 0.336107 | 7.3:+36443109 | MS.gene94675:CDS |
| TCTTAAATTTCATTCTGATT+TGG | 0.337793 | 7.3:-36445057 | None:intergenic |
| CCTAATCTTAACAGTGTTGT+TGG | 0.371102 | 7.3:+36443070 | MS.gene94675:CDS |
| AGTCACTGCTGGGATGGAAA+TGG | 0.376732 | 7.3:-36443806 | None:intergenic |
| GCTATGGTGGCATTGCTTGT+AGG | 0.377173 | 7.3:+36443882 | MS.gene94675:CDS |
| CCAACAACACTGTTAAGATT+AGG | 0.378693 | 7.3:-36443070 | None:intergenic |
| TAAAGCATGAGTAATGGAAT+TGG | 0.386548 | 7.3:-36443924 | None:intergenic |
| TCTTTCACCCAACAATGCTT+TGG | 0.388930 | 7.3:-36442530 | None:intergenic |
| TGATAACTTCTACTGCTTGT+TGG | 0.390054 | 7.3:+36443856 | MS.gene94675:CDS |
| ATGCAGTGGGCCAGAAGTCC+TGG | 0.395799 | 7.3:+36443771 | MS.gene94675:intron |
| CACTAATTTCAGAATCTGTT+TGG | 0.396613 | 7.3:-36445028 | None:intergenic |
| CAGCAATTCCAAAGCATTGT+TGG | 0.398283 | 7.3:+36442522 | MS.gene94675:CDS |
| TATAACATACCATCCATGAT+AGG | 0.403670 | 7.3:-36443122 | None:intergenic |
| GTGGCATTGCTTGTAGGATT+GGG | 0.423209 | 7.3:+36443888 | MS.gene94675:CDS |
| CAAACAGATTCTGAAATTAG+TGG | 0.428433 | 7.3:+36445029 | MS.gene94675:CDS |
| GTAGGATTGGGATTTACAAT+TGG | 0.429127 | 7.3:+36443900 | MS.gene94675:CDS |
| GTTAATCTTCTATGGCAACT+TGG | 0.430896 | 7.3:+36442204 | None:intergenic |
| ATTGTTGGGTGAAAGATTCA+TGG | 0.438978 | 7.3:+36442537 | MS.gene94675:CDS |
| GAGGCAGCAAGGCCTGTGTT+TGG | 0.442475 | 7.3:+36444888 | MS.gene94675:CDS |
| TAGGAATGGAGCTATCTTAG+AGG | 0.444853 | 7.3:+36444653 | MS.gene94675:intron |
| TTAATCTTCTATGGCAACTT+GGG | 0.445278 | 7.3:+36442205 | None:intergenic |
| TACTGCTTGTTGGACTGCTA+TGG | 0.447734 | 7.3:+36443866 | MS.gene94675:CDS |
| TCAATTGAGTCAACCCTCAA+TGG | 0.449956 | 7.3:-36442419 | None:intergenic |
| AGGTGATAGTGTGGAATTTG+AGG | 0.461549 | 7.3:-36444761 | None:intergenic |
| GTCACTGCTGGGATGGAAAT+GGG | 0.462406 | 7.3:-36443805 | None:intergenic |
| GGTGGCATTGCTTGTAGGAT+TGG | 0.463654 | 7.3:+36443887 | MS.gene94675:CDS |
| GCCAGAAGTCCTGGGAAGAC+TGG | 0.465518 | 7.3:+36443780 | MS.gene94675:CDS |
| AATTGAACAAGAACATGAAC+AGG | 0.467947 | 7.3:+36442436 | MS.gene94675:CDS |
| AGCAATTCCAAAGCATTGTT+GGG | 0.468648 | 7.3:+36442523 | MS.gene94675:CDS |
| ACAAGAACATGAACAGGAAC+AGG | 0.468800 | 7.3:+36442442 | MS.gene94675:CDS |
| TATACAGGAGAATTAGTCAT+AGG | 0.472631 | 7.3:+36443231 | MS.gene94675:intron |
| GTATTTCCAAAACCAAGAAC+AGG | 0.474801 | 7.3:+36442263 | MS.gene94675:CDS |
| CCTCTTTATTGGGCTGCTCA+AGG | 0.476332 | 7.3:+36442647 | MS.gene94675:CDS |
| TGGACCAAACAAGTCACTGC+TGG | 0.478611 | 7.3:-36443817 | None:intergenic |
| GTGACTTACTTGCACCATCA+TGG | 0.478921 | 7.3:+36444085 | MS.gene94675:CDS |
| AATTCTCCAATAAGGTGAAA+AGG | 0.487740 | 7.3:-36444948 | None:intergenic |
| AATAACATTCACCATGACAT+TGG | 0.490823 | 7.3:+36444713 | MS.gene94675:CDS |
| CTATTGACCGCGATTATGGA+TGG | 0.507864 | 7.3:+36444687 | MS.gene94675:CDS |
| GAGAGGAAACTTACAACATA+CGG | 0.509379 | 7.3:-36443954 | None:intergenic |
| GAGTTACCAGAGTTTGATCC+TGG | 0.511019 | 7.3:+36442464 | MS.gene94675:CDS |
| GAATGTGAGTACTCCATTGA+GGG | 0.511988 | 7.3:+36442406 | MS.gene94675:CDS |
| GGTGATAGTGTGGAATTTGA+GGG | 0.516178 | 7.3:-36444760 | None:intergenic |
| GGATATGCAAGCAATGGAAA+AGG | 0.519991 | 7.3:-36443645 | None:intergenic |
| TTTAAGGAAAAGAGAAAATG+GGG | 0.522052 | 7.3:+36442380 | MS.gene94675:CDS |
| AGGACTCATCACCAGAATCA+TGG | 0.529486 | 7.3:+36443251 | MS.gene94675:CDS |
| TGCTGTGTCCAACAATTCAA+AGG | 0.531533 | 7.3:+36442289 | MS.gene94675:CDS |
| AAATGACGAGTCTTGGCATC+CGG | 0.531545 | 7.3:+36443283 | MS.gene94675:CDS |
| GATCATTATGTTAGTGACAC+TGG | 0.532354 | 7.3:+36444990 | MS.gene94675:CDS |
| TTCACCACCACCATTTACAT+TGG | 0.537892 | 7.3:+36442487 | MS.gene94675:CDS |
| TTCTTGTTCCCTATCATGGA+TGG | 0.540256 | 7.3:+36443113 | MS.gene94675:CDS |
| GACAAATTACCTTGGTATCG+TGG | 0.541472 | 7.3:+36444115 | MS.gene94675:CDS |
| ATGTTGAAAATGACGAGTCT+TGG | 0.543891 | 7.3:+36443276 | MS.gene94675:CDS |
| CCAATAAGGTGAAAAGGAAG+AGG | 0.544622 | 7.3:-36444942 | None:intergenic |
| TGAATGTGAGTACTCCATTG+AGG | 0.554279 | 7.3:+36442405 | MS.gene94675:CDS |
| AAATGGGAACCAGTCTTCCC+AGG | 0.559704 | 7.3:-36443789 | None:intergenic |
| ACTCCATAAAGCATGAGTAA+TGG | 0.560961 | 7.3:-36443930 | None:intergenic |
| CAAACAAGTCACTGCTGGGA+TGG | 0.566530 | 7.3:-36443812 | None:intergenic |
| GGACCAAACAAGTCACTGCT+GGG | 0.570996 | 7.3:-36443816 | None:intergenic |
| GTAAATGGTGGTGGTGAACC+AGG | 0.571749 | 7.3:-36442482 | None:intergenic |
| GTTTGCAGACTGAGGCAGCA+AGG | 0.573397 | 7.3:+36444877 | MS.gene94675:intron |
| TGCTTGTTGGACTGCTATGG+TGG | 0.574412 | 7.3:+36443869 | MS.gene94675:CDS |
| TTTGGAAATACTGGAGCAAG+TGG | 0.574925 | 7.3:-36442251 | None:intergenic |
| TGCAGTGGGCCAGAAGTCCT+GGG | 0.574948 | 7.3:+36443772 | MS.gene94675:intron |
| CCTTGAGCAGCCCAATAAAG+AGG | 0.576755 | 7.3:-36442647 | None:intergenic |
| TACACAGGATATGCAAGCAA+TGG | 0.581321 | 7.3:-36443651 | None:intergenic |
| AGATACTCACAGCTTCAACT+AGG | 0.590574 | 7.3:-36444781 | None:intergenic |
| AGTGTGGAATTTGAGGGAAA+AGG | 0.599823 | 7.3:-36444754 | None:intergenic |
| TTGTAATATTCTCCAAACAC+AGG | 0.600552 | 7.3:-36444900 | None:intergenic |
| ATAACATACCATCCATGATA+GGG | 0.602793 | 7.3:-36443121 | None:intergenic |
| GAATGGAGCTATCTTAGAGG+TGG | 0.607399 | 7.3:+36444656 | MS.gene94675:CDS |
| ATTACCTTGGTATCGTGGAA+AGG | 0.611215 | 7.3:+36444120 | MS.gene94675:CDS |
| GTCATGAAGACAAATTACCT+TGG | 0.612404 | 7.3:+36444107 | MS.gene94675:CDS |
| GGTGAACCAGGATCAAACTC+TGG | 0.614380 | 7.3:-36442470 | None:intergenic |
| GCTTCAACTAGGTGATAGTG+TGG | 0.622119 | 7.3:-36444770 | None:intergenic |
| TCAGCCAATGTAAATGGTGG+TGG | 0.634606 | 7.3:-36442491 | None:intergenic |
| TGACATGAGTTCCAATGTCA+TGG | 0.641062 | 7.3:-36444724 | None:intergenic |
| AAATAACTTACAAGGTACAC+AGG | 0.642457 | 7.3:-36443666 | None:intergenic |
| ATTTGTCTTCATGACCATGA+TGG | 0.654713 | 7.3:-36444099 | None:intergenic |
| AGTACCTTTCCACGATACCA+AGG | 0.662444 | 7.3:-36444124 | None:intergenic |
| ATATCAGCCAATGTAAATGG+TGG | 0.666664 | 7.3:-36442494 | None:intergenic |
| TATTAATCCATCCATAATCG+CGG | 0.702360 | 7.3:-36444694 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATATGTAAACTAAAAT+CGG | - | chr7.3:36444618-36444637 | None:intergenic | 10.0% |
| !! | ATTTGAATATTAATTAGTTC+TGG | + | chr7.3:36443714-36443733 | MS.gene94675:intron | 15.0% |
| !! | TAGTATAAAATATTGTCAAA+CGG | - | chr7.3:36442845-36442864 | None:intergenic | 15.0% |
| !!! | TACTTTTAATTTTTTTGCTA+TGG | + | chr7.3:36442945-36442964 | MS.gene94675:intron | 15.0% |
| !! | AAATTCTAGTCAAAATTTGT+AGG | - | chr7.3:36443698-36443717 | None:intergenic | 20.0% |
| !! | AGAAAAAATATTTAAGAGCT+TGG | + | chr7.3:36443590-36443609 | MS.gene94675:CDS | 20.0% |
| !! | AGTATTCTTAAATGAGAAAA+TGG | - | chr7.3:36443509-36443528 | None:intergenic | 20.0% |
| !! | TCCTTAAAATTCTAATACAA+AGG | + | chr7.3:36443544-36443563 | MS.gene94675:intron | 20.0% |
| !!! | AATTCAAAGGCTAAATTTTT+AGG | + | chr7.3:36442302-36442321 | MS.gene94675:CDS | 20.0% |
| !!! | ACCTTTGTATTAGAATTTTA+AGG | - | chr7.3:36443548-36443567 | None:intergenic | 20.0% |
| !!! | ATTTTAAGGAAAAGAGAAAA+TGG | + | chr7.3:36442378-36442397 | MS.gene94675:CDS | 20.0% |
| !!! | TTAATCTTTATCTGTTGATT+AGG | + | chr7.3:36444634-36444653 | MS.gene94675:intron | 20.0% |
| !!! | TTTGATTTTGATTGTTGTTT+TGG | + | chr7.3:36443013-36443032 | MS.gene94675:intron | 20.0% |
| !!! | TTTTAAGGAAAAGAGAAAAT+GGG | + | chr7.3:36442379-36442398 | MS.gene94675:CDS | 20.0% |
| !!! | TTTTAATTTTCATTAGACGT+CGG | + | chr7.3:36443459-36443478 | MS.gene94675:intron | 20.0% |
| ! | AATTGATCAATGAAAAAGAG+AGG | - | chr7.3:36443974-36443993 | None:intergenic | 25.0% |
| ! | ACCTTATTGGAGAATTTATA+AGG | + | chr7.3:36444955-36444974 | MS.gene94675:CDS | 25.0% |
| ! | TATGTTTACCTTGATTATAC+AGG | + | chr7.3:36443216-36443235 | MS.gene94675:intron | 25.0% |
| ! | TATTGGATCAATGTACAATT+GGG | - | chr7.3:36444218-36444237 | None:intergenic | 25.0% |
| ! | TCCTTATAAATTCTCCAATA+AGG | - | chr7.3:36444959-36444978 | None:intergenic | 25.0% |
| ! | TTATTGGATCAATGTACAAT+TGG | - | chr7.3:36444219-36444238 | None:intergenic | 25.0% |
| ! | TTCAGTCAAATATCAGATAT+TGG | + | chr7.3:36444190-36444209 | MS.gene94675:intron | 25.0% |
| ! | TTCTTAATAATTGGATGGTT+TGG | + | chr7.3:36442624-36442643 | MS.gene94675:CDS | 25.0% |
| ! | TTGTAAACGCAATTTGAAAA+AGG | + | chr7.3:36443429-36443448 | MS.gene94675:intron | 25.0% |
| ! | TTGTCGATAGTAGAAAATAA+CGG | + | chr7.3:36442771-36442790 | MS.gene94675:intron | 25.0% |
| ! | TTTAAGGAAAAGAGAAAATG+GGG | + | chr7.3:36442380-36442399 | MS.gene94675:CDS | 25.0% |
| !! | AAATTTAGCCTTTGAATTGT+TGG | - | chr7.3:36442300-36442319 | None:intergenic | 25.0% |
| !! | ATTTAGAGCAAAGTCAAATT+AGG | - | chr7.3:36444036-36444055 | None:intergenic | 25.0% |
| !! | CATGAATTTTCATTAGATGT+CGG | - | chr7.3:36443388-36443407 | None:intergenic | 25.0% |
| !! | TGCTTTTCTTAATAATTGGA+TGG | + | chr7.3:36442619-36442638 | MS.gene94675:CDS | 25.0% |
| !! | TTTTCATTGATCAATTAGCA+TGG | + | chr7.3:36443978-36443997 | MS.gene94675:intron | 25.0% |
| !!! | AAATTTTTAGGCACAAAACA+AGG | + | chr7.3:36442314-36442333 | MS.gene94675:CDS | 25.0% |
| !!! | AGAGATGTTGTTATTGTTTT+TGG | + | chr7.3:36442581-36442600 | MS.gene94675:CDS | 25.0% |
| !!! | ATATTAATTAGTTCTGGTAG+AGG | + | chr7.3:36443720-36443739 | MS.gene94675:intron | 25.0% |
| !!! | ATTAGCATGGTTTTAGTTTT+TGG | + | chr7.3:36443991-36444010 | MS.gene94675:intron | 25.0% |
| !!! | TGTTGTTATTGTTTTTGGTT+TGG | + | chr7.3:36442586-36442605 | MS.gene94675:CDS | 25.0% |
| AAATAACTTACAAGGTACAC+AGG | - | chr7.3:36443669-36443688 | None:intergenic | 30.0% | |
| AATAACATTCACCATGACAT+TGG | + | chr7.3:36444713-36444732 | MS.gene94675:CDS | 30.0% | |
| AATCATGACCAAGAACAAAA+AGG | - | chr7.3:36442688-36442707 | None:intergenic | 30.0% | |
| AATTCTCCAATAAGGTGAAA+AGG | - | chr7.3:36444951-36444970 | None:intergenic | 30.0% | |
| AATTGAACAAGAACATGAAC+AGG | + | chr7.3:36442436-36442455 | MS.gene94675:CDS | 30.0% | |
| ATAACATACCATCCATGATA+GGG | - | chr7.3:36443124-36443143 | None:intergenic | 30.0% | |
| ATCAATCAAATTTCGATCGT+TGG | + | chr7.3:36444299-36444318 | MS.gene94675:intron | 30.0% | |
| ATCATGACCAAGAACAAAAA+GGG | - | chr7.3:36442687-36442706 | None:intergenic | 30.0% | |
| ATTCCATTACTCATGCTTTA+TGG | + | chr7.3:36443927-36443946 | MS.gene94675:CDS | 30.0% | |
| CACTAATTTCAGAATCTGTT+TGG | - | chr7.3:36445031-36445050 | None:intergenic | 30.0% | |
| CTAATTCTCCTGTATAATCA+AGG | - | chr7.3:36443227-36443246 | None:intergenic | 30.0% | |
| CTCTATCTTAGTTGAAACAA+TGG | + | chr7.3:36444802-36444821 | MS.gene94675:intron | 30.0% | |
| CTTATATCAGCCAATGTAAA+TGG | - | chr7.3:36442500-36442519 | None:intergenic | 30.0% | |
| GGCACAATAAATAACTTACA+AGG | - | chr7.3:36443677-36443696 | None:intergenic | 30.0% | |
| TATAACATACCATCCATGAT+AGG | - | chr7.3:36443125-36443144 | None:intergenic | 30.0% | |
| TATACAGGAGAATTAGTCAT+AGG | + | chr7.3:36443231-36443250 | MS.gene94675:intron | 30.0% | |
| TATTAATCCATCCATAATCG+CGG | - | chr7.3:36444697-36444716 | None:intergenic | 30.0% | |
| TTAATCCAACAGACGAAATA+TGG | + | chr7.3:36444546-36444565 | MS.gene94675:intron | 30.0% | |
| TTGTAATATTCTCCAAACAC+AGG | - | chr7.3:36444903-36444922 | None:intergenic | 30.0% | |
| ! | AATTGAAGGTTTTTGTGATG+TGG | + | chr7.3:36444053-36444072 | MS.gene94675:intron | 30.0% |
| ! | ACCAAAAGCTTGTGATTTTA+AGG | + | chr7.3:36442364-36442383 | MS.gene94675:CDS | 30.0% |
| ! | CTTTATCTGTTGATTAGGAA+TGG | + | chr7.3:36444639-36444658 | MS.gene94675:intron | 30.0% |
| ! | TAAAGCATGAGTAATGGAAT+TGG | - | chr7.3:36443927-36443946 | None:intergenic | 30.0% |
| ! | TCCTTAAAATCACAAGCTTT+TGG | - | chr7.3:36442368-36442387 | None:intergenic | 30.0% |
| ! | TTGACTTTGCTCTAAATTGA+AGG | + | chr7.3:36444039-36444058 | MS.gene94675:intron | 30.0% |
| ! | TTTTTGTTCTTGGTCATGAT+TGG | + | chr7.3:36442687-36442706 | MS.gene94675:CDS | 30.0% |
| !! | CAAACAGATTCTGAAATTAG+TGG | + | chr7.3:36445029-36445048 | MS.gene94675:CDS | 30.0% |
| !! | TTTTGCTATGGTTGACTTTT+GGG | + | chr7.3:36442957-36442976 | MS.gene94675:intron | 30.0% |
| !! | TTTTTGCTATGGTTGACTTT+TGG | + | chr7.3:36442956-36442975 | MS.gene94675:intron | 30.0% |
| !!! | AGTGATTTGTTTTTAGAGTC+AGG | + | chr7.3:36444832-36444851 | MS.gene94675:intron | 30.0% |
| !!! | CTGCTGCTTTTCTTAATAAT+TGG | + | chr7.3:36442615-36442634 | MS.gene94675:CDS | 30.0% |
| !!! | TGTTGTTTTGGAATTTTCAG+TGG | + | chr7.3:36443025-36443044 | MS.gene94675:intron | 30.0% |
| !!! | TTTTTGGTTTGTAGATGTGT+CGG | + | chr7.3:36444276-36444295 | MS.gene94675:intron | 30.0% |
| ACAGTCAAGATTTGACTGAA+TGG | - | chr7.3:36444400-36444419 | None:intergenic | 35.0% | |
| ACTCCATAAAGCATGAGTAA+TGG | - | chr7.3:36443933-36443952 | None:intergenic | 35.0% | |
| AGAGAATGTTATCTTCTCAC+CGG | - | chr7.3:36443305-36443324 | None:intergenic | 35.0% | |
| ATATCAGCCAATGTAAATGG+TGG | - | chr7.3:36442497-36442516 | None:intergenic | 35.0% | |
| ATGTTGAAAATGACGAGTCT+TGG | + | chr7.3:36443276-36443295 | MS.gene94675:CDS | 35.0% | |
| ATTGTTGGGTGAAAGATTCA+TGG | + | chr7.3:36442537-36442556 | MS.gene94675:CDS | 35.0% | |
| ATTTGTCTTCATGACCATGA+TGG | - | chr7.3:36444102-36444121 | None:intergenic | 35.0% | |
| CAAACCAAAAAACACATTGG+TGG | - | chr7.3:36444376-36444395 | None:intergenic | 35.0% | |
| CAAATCTTGACTGTTTGATG+AGG | + | chr7.3:36444406-36444425 | MS.gene94675:intron | 35.0% | |
| CAGTCGAAACTTTGACTAAA+TGG | - | chr7.3:36444508-36444527 | None:intergenic | 35.0% | |
| CAGTGCAGTAAAGTCATATT+TGG | - | chr7.3:36444432-36444451 | None:intergenic | 35.0% | |
| CCAACAACACTGTTAAGATT+AGG | - | chr7.3:36443073-36443092 | None:intergenic | 35.0% | |
| CCTAATCTTAACAGTGTTGT+TGG | + | chr7.3:36443070-36443089 | MS.gene94675:CDS | 35.0% | |
| CTAGTCTGTACAGTCATATT+TGG | - | chr7.3:36444352-36444371 | None:intergenic | 35.0% | |
| GAGAGGAAACTTACAACATA+CGG | - | chr7.3:36443957-36443976 | None:intergenic | 35.0% | |
| GATCATTATGTTAGTGACAC+TGG | + | chr7.3:36444990-36445009 | MS.gene94675:CDS | 35.0% | |
| GGACAAACCAAAAAACACAT+TGG | - | chr7.3:36444379-36444398 | None:intergenic | 35.0% | |
| GTAGGATTGGGATTTACAAT+TGG | + | chr7.3:36443900-36443919 | MS.gene94675:CDS | 35.0% | |
| GTATTTCCAAAACCAAGAAC+AGG | + | chr7.3:36442263-36442282 | MS.gene94675:CDS | 35.0% | |
| GTCATGAAGACAAATTACCT+TGG | + | chr7.3:36444107-36444126 | MS.gene94675:CDS | 35.0% | |
| GTTTACAAAGTACGCTTACA+TGG | - | chr7.3:36443417-36443436 | None:intergenic | 35.0% | |
| TACAGTCATATTTGGCCTAT+CGG | - | chr7.3:36444344-36444363 | None:intergenic | 35.0% | |
| TCAATTCTTGTTCCCTATCA+TGG | + | chr7.3:36443109-36443128 | MS.gene94675:CDS | 35.0% | |
| TGATAACTTCTACTGCTTGT+TGG | + | chr7.3:36443856-36443875 | MS.gene94675:CDS | 35.0% | |
| TGTTGTTCTTTGAATGCAGT+GGG | + | chr7.3:36443758-36443777 | MS.gene94675:intron | 35.0% | |
| TTAGTCAAAGTTTCGACTGT+TGG | + | chr7.3:36444509-36444528 | MS.gene94675:intron | 35.0% | |
| TTGATCCAATAAGCGAGATA+TGG | + | chr7.3:36444227-36444246 | MS.gene94675:intron | 35.0% | |
| ! | ATCACATCCTTTTTCTCACT+TGG | - | chr7.3:36443840-36443859 | None:intergenic | 35.0% |
| ! | TTGTTCAAATTTTGCTACGC+AGG | + | chr7.3:36442795-36442814 | MS.gene94675:intron | 35.0% |
| ! | TTGTTGTTCTTTGAATGCAG+TGG | + | chr7.3:36443757-36443776 | MS.gene94675:intron | 35.0% |
| ! | TTTTGTGATGTGGTTGGATT+TGG | + | chr7.3:36444063-36444082 | MS.gene94675:CDS | 35.0% |
| !! | AAGACTCGTCATTTTCAACA+TGG | - | chr7.3:36443277-36443296 | None:intergenic | 35.0% |
| !! | ACTTGGGTTTTATCAGAATG+TGG | + | chr7.3:36442221-36442240 | MS.gene94675:CDS | 35.0% |
| !! | AGCAATTCCAAAGCATTGTT+GGG | + | chr7.3:36442523-36442542 | MS.gene94675:CDS | 35.0% |
| !! | TTTGGAATTTTCAGTGGTCA+TGG | + | chr7.3:36443031-36443050 | MS.gene94675:intron | 35.0% |
| !!! | GACTTTTGGGTTGTAGAATT+TGG | + | chr7.3:36442970-36442989 | MS.gene94675:intron | 35.0% |
| !!! | GTTCTTGGTTTTGGAAATAC+TGG | - | chr7.3:36442263-36442282 | None:intergenic | 35.0% |
| !!! | TAGACCACCAATGTGTTTTT+TGG | + | chr7.3:36444369-36444388 | MS.gene94675:intron | 35.0% |
| AAAAGACTGTACTGCTACAG+AGG | - | chr7.3:36444171-36444190 | None:intergenic | 40.0% | |
| AACAAAAAGGGCCCAAAACA+TGG | - | chr7.3:36442675-36442694 | None:intergenic | 40.0% | |
| ACAAGAACATGAACAGGAAC+AGG | + | chr7.3:36442442-36442461 | MS.gene94675:CDS | 40.0% | |
| ACTACTATTGACCGCGATTA+TGG | + | chr7.3:36444683-36444702 | MS.gene94675:CDS | 40.0% | |
| AGATACTCACAGCTTCAACT+AGG | - | chr7.3:36444784-36444803 | None:intergenic | 40.0% | |
| AGTGTGGAATTTGAGGGAAA+AGG | - | chr7.3:36444757-36444776 | None:intergenic | 40.0% | |
| ATATTTGGCCTATCGGATCA+AGG | - | chr7.3:36444337-36444356 | None:intergenic | 40.0% | |
| ATGACTTTACTGCACTGAGA+CGG | + | chr7.3:36444435-36444454 | MS.gene94675:intron | 40.0% | |
| ATGAGAAAATGGCACATGCA+CGG | - | chr7.3:36443498-36443517 | None:intergenic | 40.0% | |
| ATTACCTTGGTATCGTGGAA+AGG | + | chr7.3:36444120-36444139 | MS.gene94675:CDS | 40.0% | |
| CAATTGTACCTTGATCCGAT+AGG | + | chr7.3:36444326-36444345 | MS.gene94675:intron | 40.0% | |
| CCAATAAGGTGAAAAGGAAG+AGG | - | chr7.3:36444945-36444964 | None:intergenic | 40.0% | |
| CGAGATATGGCTACATTGAT+CGG | + | chr7.3:36444240-36444259 | MS.gene94675:intron | 40.0% | |
| GAATGTGAGTACTCCATTGA+GGG | + | chr7.3:36442406-36442425 | MS.gene94675:CDS | 40.0% | |
| GACAAATTACCTTGGTATCG+TGG | + | chr7.3:36444115-36444134 | MS.gene94675:CDS | 40.0% | |
| GGATATGCAAGCAATGGAAA+AGG | - | chr7.3:36443648-36443667 | None:intergenic | 40.0% | |
| GTTTGGTCCAAGTGAGAAAA+AGG | + | chr7.3:36443830-36443849 | MS.gene94675:CDS | 40.0% | |
| TACACAGGATATGCAAGCAA+TGG | - | chr7.3:36443654-36443673 | None:intergenic | 40.0% | |
| TAGGAATGGAGCTATCTTAG+AGG | + | chr7.3:36444653-36444672 | MS.gene94675:intron | 40.0% | |
| TCAATTGAGTCAACCCTCAA+TGG | - | chr7.3:36442422-36442441 | None:intergenic | 40.0% | |
| TCTTTCACCCAACAATGCTT+TGG | - | chr7.3:36442533-36442552 | None:intergenic | 40.0% | |
| TGAATGTGAGTACTCCATTG+AGG | + | chr7.3:36442405-36442424 | MS.gene94675:CDS | 40.0% | |
| TGACATGAGTTCCAATGTCA+TGG | - | chr7.3:36444727-36444746 | None:intergenic | 40.0% | |
| TGCTGTGTCCAACAATTCAA+AGG | + | chr7.3:36442289-36442308 | MS.gene94675:CDS | 40.0% | |
| TGTAGCCATATCTCGCTTAT+TGG | - | chr7.3:36444235-36444254 | None:intergenic | 40.0% | |
| TTCACCACCACCATTTACAT+TGG | + | chr7.3:36442487-36442506 | MS.gene94675:CDS | 40.0% | |
| TTCTTGTTCCCTATCATGGA+TGG | + | chr7.3:36443113-36443132 | MS.gene94675:CDS | 40.0% | |
| TTTCAACATGGCCATGATTC+TGG | - | chr7.3:36443265-36443284 | None:intergenic | 40.0% | |
| TTTGGAAATACTGGAGCAAG+TGG | - | chr7.3:36442254-36442273 | None:intergenic | 40.0% | |
| ! | AGGTGATAGTGTGGAATTTG+AGG | - | chr7.3:36444764-36444783 | None:intergenic | 40.0% |
| ! | CCTCTTCCTTTTCACCTTAT+TGG | + | chr7.3:36444942-36444961 | MS.gene94675:CDS | 40.0% |
| ! | GAAGGTTTTTGTGATGTGGT+TGG | + | chr7.3:36444057-36444076 | MS.gene94675:intron | 40.0% |
| ! | GATGGTTTGGCCTCTTTATT+GGG | + | chr7.3:36442637-36442656 | MS.gene94675:CDS | 40.0% |
| ! | GCAAAACCTGTTCTTGGTTT+TGG | - | chr7.3:36442272-36442291 | None:intergenic | 40.0% |
| ! | GGTGATAGTGTGGAATTTGA+GGG | - | chr7.3:36444763-36444782 | None:intergenic | 40.0% |
| ! | TGCTCAAGGAACCATGTTTT+GGG | + | chr7.3:36442661-36442680 | MS.gene94675:CDS | 40.0% |
| ! | TTTTGGGCCCTTTTTGTTCT+TGG | + | chr7.3:36442677-36442696 | MS.gene94675:CDS | 40.0% |
| !! | CAGCAATTCCAAAGCATTGT+TGG | + | chr7.3:36442522-36442541 | MS.gene94675:CDS | 40.0% |
| !! | TTTGCTTTGTTTGCAGACTG+AGG | + | chr7.3:36444869-36444888 | MS.gene94675:intron | 40.0% |
| AAATGACGAGTCTTGGCATC+CGG | + | chr7.3:36443283-36443302 | MS.gene94675:CDS | 45.0% | |
| AGGACTCATCACCAGAATCA+TGG | + | chr7.3:36443251-36443270 | MS.gene94675:CDS | 45.0% | |
| AGTACCTTTCCACGATACCA+AGG | - | chr7.3:36444127-36444146 | None:intergenic | 45.0% | |
| CTATTGACCGCGATTATGGA+TGG | + | chr7.3:36444687-36444706 | MS.gene94675:CDS | 45.0% | |
| GAATGGAGCTATCTTAGAGG+TGG | + | chr7.3:36444656-36444675 | MS.gene94675:CDS | 45.0% | |
| GACACAGCAAAACCTGTTCT+TGG | - | chr7.3:36442278-36442297 | None:intergenic | 45.0% | |
| GAGTTACCAGAGTTTGATCC+TGG | + | chr7.3:36442464-36442483 | MS.gene94675:CDS | 45.0% | |
| GTGACTTACTTGCACCATCA+TGG | + | chr7.3:36444085-36444104 | MS.gene94675:CDS | 45.0% | |
| GTGGCATTGCTTGTAGGATT+GGG | + | chr7.3:36443888-36443907 | MS.gene94675:CDS | 45.0% | |
| TCAGCCAATGTAAATGGTGG+TGG | - | chr7.3:36442494-36442513 | None:intergenic | 45.0% | |
| TGACTTTACTGCACTGAGAC+GGG | + | chr7.3:36444436-36444455 | MS.gene94675:intron | 45.0% | |
| ! | CTGCTCAAGGAACCATGTTT+TGG | + | chr7.3:36442660-36442679 | MS.gene94675:CDS | 45.0% |
| ! | GCTTCAACTAGGTGATAGTG+TGG | - | chr7.3:36444773-36444792 | None:intergenic | 45.0% |
| ! | GGAAGAGGAGCTGATTTCTT+TGG | - | chr7.3:36444930-36444949 | None:intergenic | 45.0% |
| ! | GGATGGTTTGGCCTCTTTAT+TGG | + | chr7.3:36442636-36442655 | MS.gene94675:CDS | 45.0% |
| ! | TACTGCTTGTTGGACTGCTA+TGG | + | chr7.3:36443866-36443885 | MS.gene94675:CDS | 45.0% |
| !!! | CGGATGACTGCTAGTCTTTT+TGG | + | chr7.3:36444260-36444279 | MS.gene94675:intron | 45.0% |
| AAATGGGAACCAGTCTTCCC+AGG | - | chr7.3:36443792-36443811 | None:intergenic | 50.0% | |
| AGTCACTGCTGGGATGGAAA+TGG | - | chr7.3:36443809-36443828 | None:intergenic | 50.0% | |
| CAAACAAGTCACTGCTGGGA+TGG | - | chr7.3:36443815-36443834 | None:intergenic | 50.0% | |
| CAGACGAAATATGGCCGCAT+TGG | + | chr7.3:36444555-36444574 | MS.gene94675:intron | 50.0% | |
| CCTCTTTATTGGGCTGCTCA+AGG | + | chr7.3:36442647-36442666 | MS.gene94675:CDS | 50.0% | |
| CCTTGAGCAGCCCAATAAAG+AGG | - | chr7.3:36442650-36442669 | None:intergenic | 50.0% | |
| GCTATGGTGGCATTGCTTGT+AGG | + | chr7.3:36443882-36443901 | MS.gene94675:CDS | 50.0% | |
| GGACCAAACAAGTCACTGCT+GGG | - | chr7.3:36443819-36443838 | None:intergenic | 50.0% | |
| GGTGAACCAGGATCAAACTC+TGG | - | chr7.3:36442473-36442492 | None:intergenic | 50.0% | |
| GGTGGCATTGCTTGTAGGAT+TGG | + | chr7.3:36443887-36443906 | MS.gene94675:CDS | 50.0% | |
| GTCACTGCTGGGATGGAAAT+GGG | - | chr7.3:36443808-36443827 | None:intergenic | 50.0% | |
| TGCGGCCATATTTCGTCTGT+TGG | - | chr7.3:36444554-36444573 | None:intergenic | 50.0% | |
| TGGACCAAACAAGTCACTGC+TGG | - | chr7.3:36443820-36443839 | None:intergenic | 50.0% | |
| ! | CGAAATATGGCCGCATTGGT+TGG | + | chr7.3:36444559-36444578 | MS.gene94675:intron | 50.0% |
| ! | TGCTTGTTGGACTGCTATGG+TGG | + | chr7.3:36443869-36443888 | MS.gene94675:CDS | 50.0% |
| !! | ATATGGCCGCATTGGTTGGA+CGG | + | chr7.3:36444563-36444582 | MS.gene94675:intron | 50.0% |
| !! | CATCCCAGCAGTGACTTGTT+TGG | + | chr7.3:36443813-36443832 | MS.gene94675:CDS | 50.0% |
| !! | GTAAATGGTGGTGGTGAACC+AGG | - | chr7.3:36442485-36442504 | None:intergenic | 50.0% |
| ACCAGTCTTCCCAGGACTTC+TGG | - | chr7.3:36443784-36443803 | None:intergenic | 55.0% | |
| GTTTGCAGACTGAGGCAGCA+AGG | + | chr7.3:36444877-36444896 | MS.gene94675:intron | 55.0% | |
| TTGCAGCCGTCCAACCAATG+CGG | - | chr7.3:36444572-36444591 | None:intergenic | 55.0% | |
| ATGCAGTGGGCCAGAAGTCC+TGG | + | chr7.3:36443771-36443790 | MS.gene94675:intron | 60.0% | |
| GAGGCAGCAAGGCCTGTGTT+TGG | + | chr7.3:36444888-36444907 | MS.gene94675:CDS | 60.0% | |
| GCCAGAAGTCCTGGGAAGAC+TGG | + | chr7.3:36443780-36443799 | MS.gene94675:CDS | 60.0% | |
| TGCAGTGGGCCAGAAGTCCT+GGG | + | chr7.3:36443772-36443791 | MS.gene94675:intron | 60.0% | |
| ! | CTGAGACGGGCATCGCTAAC+TGG | + | chr7.3:36444449-36444468 | MS.gene94675:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 36442215 | 36445070 | 36442215 | ID=MS.gene94675 |
| chr7.3 | mRNA | 36442215 | 36445070 | 36442215 | ID=MS.gene94675.t1;Parent=MS.gene94675 |
| chr7.3 | exon | 36442215 | 36442708 | 36442215 | ID=MS.gene94675.t1.exon1;Parent=MS.gene94675.t1 |
| chr7.3 | CDS | 36442215 | 36442708 | 36442215 | ID=cds.MS.gene94675.t1;Parent=MS.gene94675.t1 |
| chr7.3 | exon | 36443045 | 36443134 | 36443045 | ID=MS.gene94675.t1.exon2;Parent=MS.gene94675.t1 |
| chr7.3 | CDS | 36443045 | 36443134 | 36443045 | ID=cds.MS.gene94675.t1;Parent=MS.gene94675.t1 |
| chr7.3 | exon | 36443238 | 36443304 | 36443238 | ID=MS.gene94675.t1.exon3;Parent=MS.gene94675.t1 |
| chr7.3 | CDS | 36443238 | 36443304 | 36443238 | ID=cds.MS.gene94675.t1;Parent=MS.gene94675.t1 |
| chr7.3 | exon | 36443585 | 36443677 | 36443585 | ID=MS.gene94675.t1.exon4;Parent=MS.gene94675.t1 |
| chr7.3 | CDS | 36443585 | 36443677 | 36443585 | ID=cds.MS.gene94675.t1;Parent=MS.gene94675.t1 |
| chr7.3 | exon | 36443777 | 36443962 | 36443777 | ID=MS.gene94675.t1.exon5;Parent=MS.gene94675.t1 |
| chr7.3 | CDS | 36443777 | 36443962 | 36443777 | ID=cds.MS.gene94675.t1;Parent=MS.gene94675.t1 |
| chr7.3 | exon | 36444061 | 36444141 | 36444061 | ID=MS.gene94675.t1.exon6;Parent=MS.gene94675.t1 |
| chr7.3 | CDS | 36444061 | 36444141 | 36444061 | ID=cds.MS.gene94675.t1;Parent=MS.gene94675.t1 |
| chr7.3 | exon | 36444656 | 36444793 | 36444656 | ID=MS.gene94675.t1.exon7;Parent=MS.gene94675.t1 |
| chr7.3 | CDS | 36444656 | 36444793 | 36444656 | ID=cds.MS.gene94675.t1;Parent=MS.gene94675.t1 |
| chr7.3 | exon | 36444885 | 36445070 | 36444885 | ID=MS.gene94675.t1.exon8;Parent=MS.gene94675.t1 |
| chr7.3 | CDS | 36444885 | 36445070 | 36444885 | ID=cds.MS.gene94675.t1;Parent=MS.gene94675.t1 |
| Gene Sequence |
| Protein sequence |
