Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001206.t1 | XP_003601577.1 | 96.7 | 180 | 6 | 0 | 1 | 180 | 24 | 203 | 1.90E-91 | 345.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001206.t1 | A7SLC8 | 54.5 | 165 | 72 | 1 | 2 | 166 | 21 | 182 | 4.9e-43 | 175.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001206.t1 | G7J9I9 | 96.7 | 180 | 6 | 0 | 1 | 180 | 24 | 203 | 1.4e-91 | 345.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene001206.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001206 | MS.gene055162 | PPI |
| MS.gene001206 | MS.gene051172 | PPI |
| MS.gene051241 | MS.gene001206 | PPI |
| MS.gene001206 | MS.gene051245 | PPI |
| MS.gene001206 | MS.gene23567 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001206.t1 | MTR_3g083200 | 96.667 | 180 | 6 | 0 | 1 | 180 | 24 | 203 | 5.73e-129 | 360 |
| MS.gene001206.t1 | MTR_3g083200 | 87.778 | 180 | 5 | 1 | 1 | 180 | 24 | 186 | 1.06e-112 | 318 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001206.t1 | AT2G04845 | 66.667 | 180 | 60 | 0 | 1 | 180 | 22 | 201 | 4.29e-85 | 250 |
| MS.gene001206.t1 | AT2G04845 | 69.677 | 155 | 47 | 0 | 1 | 155 | 22 | 176 | 1.61e-80 | 238 |
| MS.gene001206.t1 | AT2G04845 | 70.213 | 141 | 42 | 0 | 1 | 141 | 22 | 162 | 9.36e-74 | 220 |
| MS.gene001206.t1 | AT2G04845 | 70.213 | 141 | 42 | 0 | 1 | 141 | 22 | 162 | 1.38e-73 | 220 |
| MS.gene001206.t1 | AT2G04845 | 70.213 | 141 | 42 | 0 | 1 | 141 | 22 | 162 | 1.38e-73 | 220 |
Find 40 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATCCATTCATGATATT+TGG | 0.076576 | 3.1:-66023527 | None:intergenic |
| ACCAAGCATCTCCTCATTCT+TGG | 0.266496 | 3.1:-66027567 | None:intergenic |
| TTGGATAAAGACTTGCTTCT+TGG | 0.270404 | 3.1:+66023658 | MS.gene001206:CDS |
| TGCATCCATTCATGATATTT+GGG | 0.307846 | 3.1:-66023526 | None:intergenic |
| CAAGGAAACTTTCATTCTCT+TGG | 0.318845 | 3.1:+66023639 | MS.gene001206:CDS |
| GCCTTTGCTATTGAGAAGTT+GGG | 0.345000 | 3.1:+66024965 | MS.gene001206:CDS |
| ATTTCAACCTCTGCTATTTG+AGG | 0.378004 | 3.1:-66023844 | None:intergenic |
| CATAGCCGTGGCAAAGGACT+TGG | 0.395075 | 3.1:+66024917 | MS.gene001206:intron |
| TGAGGAGATGCTTGGTTTGA+TGG | 0.406506 | 3.1:+66027574 | MS.gene001206:CDS |
| CTTCTTGGAACCTTCTCTCA+TGG | 0.417969 | 3.1:+66023673 | MS.gene001206:CDS |
| GGCCTTTGCTATTGAGAAGT+TGG | 0.437922 | 3.1:+66024964 | MS.gene001206:CDS |
| ATACTCTTGTTCGAGAGAAA+GGG | 0.455235 | 3.1:-66023584 | None:intergenic |
| GATACTCTTGTTCGAGAGAA+AGG | 0.456194 | 3.1:-66023585 | None:intergenic |
| CTTGTTGAGATCACGTGACC+AGG | 0.456827 | 3.1:-66023620 | None:intergenic |
| ATTTGTTTGACAGGTGACTT+TGG | 0.470985 | 3.1:+66027526 | MS.gene001206:intron |
| ACGTTCCCAAATATCATGAA+TGG | 0.490153 | 3.1:+66023521 | MS.gene001206:CDS |
| CATGGTCAACCCCACGTTGA+AGG | 0.491566 | 3.1:+66023691 | MS.gene001206:CDS |
| ACATTATTGACCTTCAACGT+GGG | 0.501922 | 3.1:-66023701 | None:intergenic |
| TTGTTCGAGAGAAAGGGGTT+CGG | 0.511970 | 3.1:-66023578 | None:intergenic |
| GCCAAGAATGAGGAGATGCT+TGG | 0.528942 | 3.1:+66027566 | MS.gene001206:CDS |
| GCAGTGGCTTGAAGTAGAGA+AGG | 0.544829 | 3.1:-66023553 | None:intergenic |
| AGTATCAGATGCAACTCTCC+TGG | 0.549318 | 3.1:+66023602 | MS.gene001206:CDS |
| TGTTAGCATAGCCGTGGCAA+AGG | 0.550626 | 3.1:+66024911 | MS.gene001206:intron |
| CCGCTATTTGCAGCTATGGT+TGG | 0.553290 | 3.1:+66023787 | MS.gene001206:intron |
| TCATGATATTTGGGAACGTG+AGG | 0.569678 | 3.1:-66023517 | None:intergenic |
| GAGGAGATGCTTGGTTTGAT+GGG | 0.572308 | 3.1:+66027575 | MS.gene001206:CDS |
| CCTTTGCTATTGAGAAGTTG+GGG | 0.572445 | 3.1:+66024966 | MS.gene001206:CDS |
| AATAACACAAGCCAAGAATG+AGG | 0.587170 | 3.1:+66027556 | MS.gene001206:CDS |
| AGAAAGGGGTTCGGAAGCAG+TGG | 0.587837 | 3.1:-66023569 | None:intergenic |
| CCTTTCCAAGTCCTTTGCCA+CGG | 0.588992 | 3.1:-66024922 | None:intergenic |
| AACATTATTGACCTTCAACG+TGG | 0.591929 | 3.1:-66023702 | None:intergenic |
| TACTCTTGTTCGAGAGAAAG+GGG | 0.600981 | 3.1:-66023583 | None:intergenic |
| CCGTGGCAAAGGACTTGGAA+AGG | 0.603951 | 3.1:+66024922 | MS.gene001206:CDS |
| CCCCAACTTCTCAATAGCAA+AGG | 0.607006 | 3.1:-66024966 | None:intergenic |
| CTGGTCACGTGATCTCAACA+AGG | 0.618601 | 3.1:+66023621 | MS.gene001206:CDS |
| TTATGATAGCTGAACAAACC+AGG | 0.634003 | 3.1:+66023866 | MS.gene001206:CDS |
| CATTATTGACCTTCAACGTG+GGG | 0.634827 | 3.1:-66023700 | None:intergenic |
| CAGTGGCTTGAAGTAGAGAA+GGG | 0.645058 | 3.1:-66023552 | None:intergenic |
| CAATGATCCTCAAATAGCAG+AGG | 0.657129 | 3.1:+66023837 | MS.gene001206:CDS |
| GTGGGGTTGACCATGAGAGA+AGG | 0.659157 | 3.1:-66023683 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCTAAATTATCTATTT+AGG | - | chr3.1:66025130-66025149 | None:intergenic | 10.0% |
| !! | TATTCTAAATTATCTATTTA+GGG | - | chr3.1:66025129-66025148 | None:intergenic | 10.0% |
| !! | TTTAAGAAATATGATAGAAT+AGG | + | chr3.1:66026188-66026207 | MS.gene001206:intron | 15.0% |
| !! | TTTGAATAAAAATGACATAA+TGG | - | chr3.1:66023995-66024014 | None:intergenic | 15.0% |
| !!! | CTTTTTAAAATCAAACTTTT+CGG | + | chr3.1:66027120-66027139 | MS.gene001206:intron | 15.0% |
| !!! | TGTTATTGTAATTTTAACTA+AGG | + | chr3.1:66026974-66026993 | MS.gene001206:intron | 15.0% |
| !!! | TTGAATATTTAAAATTGTGA+CGG | - | chr3.1:66024634-66024653 | None:intergenic | 15.0% |
| !!! | TTTTAAATTTAGAACATAGA+TGG | - | chr3.1:66024753-66024772 | None:intergenic | 15.0% |
| !! | AAATGCTCAAAATTTGTATT+TGG | + | chr3.1:66024535-66024554 | MS.gene001206:intron | 20.0% |
| !! | ATATTCTCGATTATCTATTT+AGG | - | chr3.1:66025292-66025311 | None:intergenic | 20.0% |
| !! | ATGGTTAAAACAAAAACTTA+AGG | - | chr3.1:66027350-66027369 | None:intergenic | 20.0% |
| !! | ATGTTTCATAAACTACAAAA+AGG | - | chr3.1:66026040-66026059 | None:intergenic | 20.0% |
| !! | CTGAAAAATAGAAATTGAAT+GGG | + | chr3.1:66025516-66025535 | MS.gene001206:intron | 20.0% |
| !! | TCTGAAAAATAGAAATTGAA+TGG | + | chr3.1:66025515-66025534 | MS.gene001206:intron | 20.0% |
| !! | TGAAAAATAGAAATTGAATG+GGG | + | chr3.1:66025517-66025536 | MS.gene001206:intron | 20.0% |
| !! | TGTTTCATAAACTACAAAAA+GGG | - | chr3.1:66026039-66026058 | None:intergenic | 20.0% |
| !!! | AAAACTTTTCAGGTTAAAAT+TGG | + | chr3.1:66024992-66025011 | MS.gene001206:CDS | 20.0% |
| !!! | AAAATATTCTTTTAGAACCA+TGG | + | chr3.1:66026663-66026682 | MS.gene001206:intron | 20.0% |
| !!! | AATGTTTTAATAGATATCTC+AGG | + | chr3.1:66024355-66024374 | MS.gene001206:intron | 20.0% |
| !!! | CGAAAAGTTTGATTTTAAAA+AGG | - | chr3.1:66027122-66027141 | None:intergenic | 20.0% |
| !!! | TAATTTCAAATTTTCAACAG+AGG | + | chr3.1:66026857-66026876 | MS.gene001206:intron | 20.0% |
| !!! | TGAAGTTACAGTTTTTTTAT+TGG | + | chr3.1:66026583-66026602 | MS.gene001206:intron | 20.0% |
| !!! | TTTCTATTTTTCAGATAAAC+AGG | - | chr3.1:66025510-66025529 | None:intergenic | 20.0% |
| ! | AATCAATTCTATAAAAGCCA+TGG | - | chr3.1:66026683-66026702 | None:intergenic | 25.0% |
| ! | AATTTGTATTTGGTCTCAAT+TGG | + | chr3.1:66024545-66024564 | MS.gene001206:intron | 25.0% |
| ! | ACCATTTATAATGTGTGTTA+AGG | - | chr3.1:66025716-66025735 | None:intergenic | 25.0% |
| ! | ACCTTAACACACATTATAAA+TGG | + | chr3.1:66025712-66025731 | MS.gene001206:intron | 25.0% |
| ! | ATGCTCTACTTGATTTATAA+AGG | - | chr3.1:66024438-66024457 | None:intergenic | 25.0% |
| ! | ATTGATCAATTCAATGACTT+TGG | - | chr3.1:66025968-66025987 | None:intergenic | 25.0% |
| ! | ATTGTCTTATGTATTAAGAC+AGG | - | chr3.1:66025219-66025238 | None:intergenic | 25.0% |
| ! | GAATATAGAATCGAAATACA+AGG | + | chr3.1:66025346-66025365 | MS.gene001206:intron | 25.0% |
| ! | GATGAAAATTACTTTAGTAC+AGG | + | chr3.1:66024412-66024431 | MS.gene001206:intron | 25.0% |
| ! | GATTAAGGTAAATTGAAATC+TGG | + | chr3.1:66027084-66027103 | MS.gene001206:intron | 25.0% |
| ! | GTTAAGGTTATTATAGAACT+TGG | - | chr3.1:66025700-66025719 | None:intergenic | 25.0% |
| ! | TAAGAGTTGTTAATTACTTG+AGG | - | chr3.1:66026340-66026359 | None:intergenic | 25.0% |
| ! | TATAAATAGGAGAACACAAA+GGG | - | chr3.1:66026295-66026314 | None:intergenic | 25.0% |
| ! | TGTCTTAATACATAAGACAA+AGG | + | chr3.1:66025218-66025237 | MS.gene001206:intron | 25.0% |
| ! | TGTCTTAATACATAAGACAA+TGG | + | chr3.1:66025218-66025237 | MS.gene001206:intron | 25.0% |
| ! | TTACTTCTTAATTTAATCGC+TGG | + | chr3.1:66025771-66025790 | MS.gene001206:intron | 25.0% |
| ! | TTTGTCTTATGTATTAAGAC+AGG | - | chr3.1:66025383-66025402 | None:intergenic | 25.0% |
| !! | GAACTTAGGATTTAGAATAA+TGG | - | chr3.1:66026386-66026405 | None:intergenic | 25.0% |
| !! | GTTTATTATGTTCTGAATGA+TGG | - | chr3.1:66027369-66027388 | None:intergenic | 25.0% |
| !! | TCTACTTGTTAAATTCTCTA+TGG | + | chr3.1:66026437-66026456 | MS.gene001206:intron | 25.0% |
| !! | TGAAAATTTTGTCCATCAAA+TGG | - | chr3.1:66025852-66025871 | None:intergenic | 25.0% |
| !!! | AAAGCCTTTAAAATGAAAGA+TGG | - | chr3.1:66026538-66026557 | None:intergenic | 25.0% |
| !!! | AAGTTAGAGGTGTTAAAAAT+AGG | + | chr3.1:66024381-66024400 | MS.gene001206:intron | 25.0% |
| !!! | ACAGTGCTATTTGTATAAAT+AGG | - | chr3.1:66026308-66026327 | None:intergenic | 25.0% |
| !!! | ATCTAGAAGTCTTATGTTTT+GGG | + | chr3.1:66024822-66024841 | MS.gene001206:intron | 25.0% |
| !!! | ATCTTTCATTTTAAAGGCTT+TGG | + | chr3.1:66026537-66026556 | MS.gene001206:intron | 25.0% |
| !!! | GCATATGTATACTTTTTAAC+TGG | + | chr3.1:66024593-66024612 | MS.gene001206:intron | 25.0% |
| AAAAAAAGATAGAGAAGCAG+CGG | - | chr3.1:66025064-66025083 | None:intergenic | 30.0% | |
| AAACAAGGTTATCCATTTGA+TGG | + | chr3.1:66025837-66025856 | MS.gene001206:intron | 30.0% | |
| AAGAAGAAAACCGCATATAA+CGG | - | chr3.1:66027467-66027486 | None:intergenic | 30.0% | |
| AATCAATTCATATGAAGCCA+TGG | - | chr3.1:66026088-66026107 | None:intergenic | 30.0% | |
| AGCGGTTATGATTATGATTA+TGG | - | chr3.1:66025577-66025596 | None:intergenic | 30.0% | |
| AGTTACAAGCTAAGTGATTA+AGG | + | chr3.1:66027069-66027088 | MS.gene001206:intron | 30.0% | |
| ATAGTCAAAACAATTGAGAC+TGG | - | chr3.1:66027024-66027043 | None:intergenic | 30.0% | |
| ATATCTCAGGTAAAAGTTAG+AGG | + | chr3.1:66024368-66024387 | MS.gene001206:intron | 30.0% | |
| CATCAACCTGTTTAAAAAAC+TGG | + | chr3.1:66025033-66025052 | MS.gene001206:CDS | 30.0% | |
| CTCTTCATATTAAATGCATG+AGG | + | chr3.1:66025085-66025104 | MS.gene001206:intron | 30.0% | |
| GAAGAATATTCTTTGAACCA+TGG | + | chr3.1:66026068-66026087 | MS.gene001206:intron | 30.0% | |
| GAATATAGAGTCGAAATACA+AGG | + | chr3.1:66025184-66025203 | MS.gene001206:intron | 30.0% | |
| GTATAAATAGGAGAACACAA+AGG | - | chr3.1:66026296-66026315 | None:intergenic | 30.0% | |
| GTCATGATTGTAACTTATTG+AGG | + | chr3.1:66024225-66024244 | MS.gene001206:intron | 30.0% | |
| TAACAGTTTGTGAAATCAAC+AGG | - | chr3.1:66027191-66027210 | None:intergenic | 30.0% | |
| TAGAATATCACTTCTGATAC+TGG | + | chr3.1:66025316-66025335 | MS.gene001206:intron | 30.0% | |
| TAGTCAAAACAATTGAGACT+GGG | - | chr3.1:66027023-66027042 | None:intergenic | 30.0% | |
| TCAGCAACAAGTTTATAAGT+AGG | - | chr3.1:66023894-66023913 | None:intergenic | 30.0% | |
| TGCATCCATTCATGATATTT+GGG | - | chr3.1:66023529-66023548 | None:intergenic | 30.0% | |
| TGTCATCTCTACAACATAAA+AGG | + | chr3.1:66024512-66024531 | MS.gene001206:intron | 30.0% | |
| TGTCTTTCTTTGTCTTTGTT+AGG | + | chr3.1:66026131-66026150 | MS.gene001206:intron | 30.0% | |
| TTAAAATGAAAGATGGACAG+AGG | - | chr3.1:66026531-66026550 | None:intergenic | 30.0% | |
| TTGCATCCATTCATGATATT+TGG | - | chr3.1:66023530-66023549 | None:intergenic | 30.0% | |
| TTGTAAGTTGTTGTCAAACA+AGG | + | chr3.1:66025822-66025841 | MS.gene001206:intron | 30.0% | |
| TTTCAGATAAACAGGTAGAA+AGG | - | chr3.1:66025502-66025521 | None:intergenic | 30.0% | |
| ! | AAGACAAAGGTACATTATAC+AGG | + | chr3.1:66025395-66025414 | MS.gene001206:intron | 30.0% |
| ! | ACATAGCAACATTTTCAAAG+AGG | + | chr3.1:66026824-66026843 | MS.gene001206:CDS | 30.0% |
| ! | AGACAAAGGTACATTATACA+GGG | + | chr3.1:66025396-66025415 | MS.gene001206:intron | 30.0% |
| ! | AGAGTATTCTCTATTGTGAA+GGG | - | chr3.1:66026239-66026258 | None:intergenic | 30.0% |
| ! | CTGTCCATCTTTCATTTTAA+AGG | + | chr3.1:66026531-66026550 | MS.gene001206:intron | 30.0% |
| ! | TAGAGTATTCTCTATTGTGA+AGG | - | chr3.1:66026240-66026259 | None:intergenic | 30.0% |
| !! | AAGTTCTGGAAAACTTGTAT+TGG | + | chr3.1:66024708-66024727 | MS.gene001206:intron | 30.0% |
| !! | CATCTAGAAGTCTTATGTTT+TGG | + | chr3.1:66024821-66024840 | MS.gene001206:intron | 30.0% |
| !! | TTGTTCCTAATTTGTTTGAC+AGG | + | chr3.1:66027517-66027536 | MS.gene001206:intron | 30.0% |
| !!! | CAGTTTTTTAAACAGGTTGA+TGG | - | chr3.1:66025035-66025054 | None:intergenic | 30.0% |
| AACATTATTGACCTTCAACG+TGG | - | chr3.1:66023705-66023724 | None:intergenic | 35.0% | |
| AAGACAATGGTACATTACAC+AGG | + | chr3.1:66025231-66025250 | MS.gene001206:intron | 35.0% | |
| AATAACACAAGCCAAGAATG+AGG | + | chr3.1:66027556-66027575 | MS.gene001206:CDS | 35.0% | |
| ACAAGGAAACATGTGCATAA+CGG | - | chr3.1:66025603-66025622 | None:intergenic | 35.0% | |
| ACATTATTGACCTTCAACGT+GGG | - | chr3.1:66023704-66023723 | None:intergenic | 35.0% | |
| ACGTTCCCAAATATCATGAA+TGG | + | chr3.1:66023521-66023540 | MS.gene001206:CDS | 35.0% | |
| AGACAATGGTACATTACACA+GGG | + | chr3.1:66025232-66025251 | MS.gene001206:intron | 35.0% | |
| AGACTTCTAGATGAAAAACC+CGG | - | chr3.1:66024814-66024833 | None:intergenic | 35.0% | |
| AGGCCTTCAATAAGAAATGT+TGG | - | chr3.1:66023924-66023943 | None:intergenic | 35.0% | |
| AGTCACCTGTCAAACAAATT+AGG | - | chr3.1:66027525-66027544 | None:intergenic | 35.0% | |
| AGTGATCAAAAGTGAGATCA+AGG | - | chr3.1:66024882-66024901 | None:intergenic | 35.0% | |
| ATACAGGGAAATGCATGAAT+TGG | + | chr3.1:66025411-66025430 | MS.gene001206:intron | 35.0% | |
| ATACTCTTGTTCGAGAGAAA+GGG | - | chr3.1:66023587-66023606 | None:intergenic | 35.0% | |
| ATGGTAGAATTAATCTCGAG+AGG | + | chr3.1:66025731-66025750 | MS.gene001206:intron | 35.0% | |
| ATTTGTTTGACAGGTGACTT+TGG | + | chr3.1:66027526-66027545 | MS.gene001206:intron | 35.0% | |
| CAAGGAAACTTTCATTCTCT+TGG | + | chr3.1:66023639-66023658 | MS.gene001206:CDS | 35.0% | |
| CAAGTTTATAAGTAGGTACC+TGG | - | chr3.1:66023887-66023906 | None:intergenic | 35.0% | |
| CATATCCAAGTAAAGCAAGT+TGG | + | chr3.1:66024283-66024302 | MS.gene001206:intron | 35.0% | |
| CTAGATATAAAAGCTTTCCC+CGG | + | chr3.1:66024792-66024811 | MS.gene001206:intron | 35.0% | |
| GAAGTAATGCTCAATTACCA+TGG | - | chr3.1:66025758-66025777 | None:intergenic | 35.0% | |
| GAGTATTCTCTATTGTGAAG+GGG | - | chr3.1:66026238-66026257 | None:intergenic | 35.0% | |
| GAGTTGTTAATTACTTGAGG+TGG | - | chr3.1:66026337-66026356 | None:intergenic | 35.0% | |
| GCTCCAACATTTCTTATTGA+AGG | + | chr3.1:66023918-66023937 | MS.gene001206:intron | 35.0% | |
| GGATAAAGTGAGAAATTGTC+AGG | - | chr3.1:66025664-66025683 | None:intergenic | 35.0% | |
| GGTAGCATACACATTAAACA+AGG | - | chr3.1:66025620-66025639 | None:intergenic | 35.0% | |
| GTAAATGTAATCACATGCTC+CGG | - | chr3.1:66023969-66023988 | None:intergenic | 35.0% | |
| TAGAACATCACTTCTGATAC+TGG | + | chr3.1:66025154-66025173 | MS.gene001206:intron | 35.0% | |
| TAGATATAAAAGCTTTCCCC+GGG | + | chr3.1:66024793-66024812 | MS.gene001206:intron | 35.0% | |
| TATGCAAGCATATGAGACTA+AGG | - | chr3.1:66024578-66024597 | None:intergenic | 35.0% | |
| TCAGTATTGCATGTAGTTCA+AGG | + | chr3.1:66025869-66025888 | MS.gene001206:intron | 35.0% | |
| TTAATGTGTATGCTACCCTA+AGG | + | chr3.1:66025623-66025642 | MS.gene001206:intron | 35.0% | |
| TTATGATAGCTGAACAAACC+AGG | + | chr3.1:66023866-66023885 | MS.gene001206:CDS | 35.0% | |
| TTATTGAGGATGCATGTGTT+GGG | + | chr3.1:66024239-66024258 | MS.gene001206:intron | 35.0% | |
| TTCTGTTCCATTCCATTCTT+GGG | - | chr3.1:66026159-66026178 | None:intergenic | 35.0% | |
| TTTCTGTTCCATTCCATTCT+TGG | - | chr3.1:66026160-66026179 | None:intergenic | 35.0% | |
| ! | ACAGTGTTCCTTCATTTTGA+AGG | + | chr3.1:66025935-66025954 | MS.gene001206:intron | 35.0% |
| ! | ATTTCAACCTCTGCTATTTG+AGG | - | chr3.1:66023847-66023866 | None:intergenic | 35.0% |
| ! | CAACTTGCTTTACTTGGATA+TGG | - | chr3.1:66024285-66024304 | None:intergenic | 35.0% |
| ! | TAAGTGCAAGTTGAACCTTA+GGG | - | chr3.1:66025641-66025660 | None:intergenic | 35.0% |
| ! | TTGGATAAAGACTTGCTTCT+TGG | + | chr3.1:66023658-66023677 | MS.gene001206:CDS | 35.0% |
| !! | GAACTTGGCTTTTACAACTA+AGG | - | chr3.1:66025685-66025704 | None:intergenic | 35.0% |
| !! | TTCCTTCATTTTGAAGGATG+TGG | + | chr3.1:66025941-66025960 | MS.gene001206:intron | 35.0% |
| !! | TTTTCCAGAACTTGTTCCAT+GGG | - | chr3.1:66024701-66024720 | None:intergenic | 35.0% |
| !!! | GACAGACCAGTTTTTTAAAC+AGG | - | chr3.1:66025042-66025061 | None:intergenic | 35.0% |
| !!! | GGAGTCTGTTTTGATAATGA+TGG | + | chr3.1:66024943-66024962 | MS.gene001206:CDS | 35.0% |
| !!! | TGTGTTTTAGCCGTTATATG+CGG | + | chr3.1:66027454-66027473 | MS.gene001206:intron | 35.0% |
| !!! | TTTTTTTGTTAGCATAGCCG+TGG | + | chr3.1:66024905-66024924 | MS.gene001206:intron | 35.0% |
| AAACCACTTGAGAAGAGAGA+GGG | - | chr3.1:66026738-66026757 | None:intergenic | 40.0% | |
| AATCCACAAGCTATGTCAAC+AGG | - | chr3.1:66026779-66026798 | None:intergenic | 40.0% | |
| AATTAATCTCGAGAGGACCA+TGG | + | chr3.1:66025738-66025757 | MS.gene001206:intron | 40.0% | |
| ACACAGGGAAATACATGAAC+TGG | + | chr3.1:66025247-66025266 | MS.gene001206:intron | 40.0% | |
| ACATGTGCATAACGGTTTAG+CGG | - | chr3.1:66025595-66025614 | None:intergenic | 40.0% | |
| ACTTCTAGATGAAAAACCCG+GGG | - | chr3.1:66024812-66024831 | None:intergenic | 40.0% | |
| ACTTGAAGCAAGAGACTGTT+AGG | - | chr3.1:66026408-66026427 | None:intergenic | 40.0% | |
| CAAGAGACTGTTAGGAACTT+AGG | - | chr3.1:66026400-66026419 | None:intergenic | 40.0% | |
| CAATGATCCTCAAATAGCAG+AGG | + | chr3.1:66023837-66023856 | MS.gene001206:CDS | 40.0% | |
| CACAGGGAAATACATGAACT+GGG | + | chr3.1:66025248-66025267 | MS.gene001206:intron | 40.0% | |
| CACTTCTGATACTGGATAAC+TGG | + | chr3.1:66025162-66025181 | MS.gene001206:intron | 40.0% | |
| CATTATTGACCTTCAACGTG+GGG | - | chr3.1:66023703-66023722 | None:intergenic | 40.0% | |
| CTGGGTCAAAATGTAACACT+CGG | + | chr3.1:66025266-66025285 | MS.gene001206:intron | 40.0% | |
| CTTATTGAGGATGCATGTGT+TGG | + | chr3.1:66024238-66024257 | MS.gene001206:intron | 40.0% | |
| CTTTGTTAGGAACCCAAGAA+TGG | + | chr3.1:66026144-66026163 | MS.gene001206:intron | 40.0% | |
| GACCACATCCTTCAAAATGA+AGG | - | chr3.1:66025946-66025965 | None:intergenic | 40.0% | |
| GACTTCTAGATGAAAAACCC+GGG | - | chr3.1:66024813-66024832 | None:intergenic | 40.0% | |
| GATACTCTTGTTCGAGAGAA+AGG | - | chr3.1:66023588-66023607 | None:intergenic | 40.0% | |
| GGCACATATGCATTGTATCT+AGG | + | chr3.1:66025890-66025909 | MS.gene001206:intron | 40.0% | |
| TAACAGTCTCTTGCTTCAAG+TGG | + | chr3.1:66026407-66026426 | MS.gene001206:intron | 40.0% | |
| TACTCTTGTTCGAGAGAAAG+GGG | - | chr3.1:66023586-66023605 | None:intergenic | 40.0% | |
| TAGTCAACGTGTCAATGTGT+AGG | + | chr3.1:66024024-66024043 | MS.gene001206:intron | 40.0% | |
| TATTGTGAAGGGGAAACTCT+TGG | - | chr3.1:66026228-66026247 | None:intergenic | 40.0% | |
| TCATGATATTTGGGAACGTG+AGG | - | chr3.1:66023520-66023539 | None:intergenic | 40.0% | |
| TTAGGAACCCAAGAATGGAA+TGG | + | chr3.1:66026149-66026168 | MS.gene001206:intron | 40.0% | |
| ! | ATAGCTTGTGGATTTGATGC+AGG | + | chr3.1:66026785-66026804 | MS.gene001206:intron | 40.0% |
| ! | CAACACCAACTTGCTTTACT+TGG | - | chr3.1:66024291-66024310 | None:intergenic | 40.0% |
| ! | GTAAGTGCAAGTTGAACCTT+AGG | - | chr3.1:66025642-66025661 | None:intergenic | 40.0% |
| ! | GTTGGGGATCAAAACTTTTC+AGG | + | chr3.1:66024982-66025001 | MS.gene001206:CDS | 40.0% |
| ! | TAGCTTGTCGATTGATGTAG+AGG | + | chr3.1:66026466-66026485 | MS.gene001206:intron | 40.0% |
| ! | TAGCTTGTGGATTTGATGCA+GGG | + | chr3.1:66026786-66026805 | MS.gene001206:intron | 40.0% |
| ! | TTGAAGCACTAACACAGAGA+CGG | - | chr3.1:66024199-66024218 | None:intergenic | 40.0% |
| !! | CCTTTGCTATTGAGAAGTTG+GGG | + | chr3.1:66024966-66024985 | MS.gene001206:CDS | 40.0% |
| !! | GCCTTTGCTATTGAGAAGTT+GGG | + | chr3.1:66024965-66024984 | MS.gene001206:CDS | 40.0% |
| !! | GTTTTCCAGAACTTGTTCCA+TGG | - | chr3.1:66024702-66024721 | None:intergenic | 40.0% |
| ACCAAGCATCTCCTCATTCT+TGG | - | chr3.1:66027570-66027589 | None:intergenic | 45.0% | |
| AGCTTGTGGATTTGATGCAG+GGG | + | chr3.1:66026787-66026806 | MS.gene001206:intron | 45.0% | |
| AGTATCAGATGCAACTCTCC+TGG | + | chr3.1:66023602-66023621 | MS.gene001206:CDS | 45.0% | |
| ATTGAAGGCCTGTCTAGTGT+CGG | + | chr3.1:66023933-66023952 | MS.gene001206:intron | 45.0% | |
| CAGTGGCTTGAAGTAGAGAA+GGG | - | chr3.1:66023555-66023574 | None:intergenic | 45.0% | |
| CCAACCATAGCTGCAAATAG+CGG | - | chr3.1:66023790-66023809 | None:intergenic | 45.0% | |
| CCCCAACTTCTCAATAGCAA+AGG | - | chr3.1:66024969-66024988 | None:intergenic | 45.0% | |
| CTTCTTGGAACCTTCTCTCA+TGG | + | chr3.1:66023673-66023692 | MS.gene001206:CDS | 45.0% | |
| GAAACCACTTGAGAAGAGAG+AGG | - | chr3.1:66026739-66026758 | None:intergenic | 45.0% | |
| TAAACCATTCCACAGACCCA+TGG | + | chr3.1:66024682-66024701 | MS.gene001206:intron | 45.0% | |
| TCTCCTGTTGACATAGCTTG+TGG | + | chr3.1:66026773-66026792 | MS.gene001206:intron | 45.0% | |
| TTGTTCGAGAGAAAGGGGTT+CGG | - | chr3.1:66023581-66023600 | None:intergenic | 45.0% | |
| ! | GAGGAGATGCTTGGTTTGAT+GGG | + | chr3.1:66027575-66027594 | MS.gene001206:CDS | 45.0% |
| ! | TGAGGAGATGCTTGGTTTGA+TGG | + | chr3.1:66027574-66027593 | MS.gene001206:CDS | 45.0% |
| !! | GGCCTTTGCTATTGAGAAGT+TGG | + | chr3.1:66024964-66024983 | MS.gene001206:CDS | 45.0% |
| CAGACCCATGGAACAAGTTC+TGG | + | chr3.1:66024694-66024713 | MS.gene001206:intron | 50.0% | |
| CCGCTATTTGCAGCTATGGT+TGG | + | chr3.1:66023787-66023806 | MS.gene001206:intron | 50.0% | |
| CCTTTCCAAGTCCTTTGCCA+CGG | - | chr3.1:66024925-66024944 | None:intergenic | 50.0% | |
| CTGGTCACGTGATCTCAACA+AGG | + | chr3.1:66023621-66023640 | MS.gene001206:CDS | 50.0% | |
| CTTGTTGAGATCACGTGACC+AGG | - | chr3.1:66023623-66023642 | None:intergenic | 50.0% | |
| GCAGTGGCTTGAAGTAGAGA+AGG | - | chr3.1:66023556-66023575 | None:intergenic | 50.0% | |
| GCCAAGAATGAGGAGATGCT+TGG | + | chr3.1:66027566-66027585 | MS.gene001206:CDS | 50.0% | |
| TCTCCCTCTCTCTTCTCAAG+TGG | + | chr3.1:66026732-66026751 | MS.gene001206:intron | 50.0% | |
| TGTGAAGGGGAAACTCTTGG+AGG | - | chr3.1:66026225-66026244 | None:intergenic | 50.0% | |
| TGTTAGCATAGCCGTGGCAA+AGG | + | chr3.1:66024911-66024930 | MS.gene001206:intron | 50.0% | |
| TGTTCCATGGGTCTGTGGAA+TGG | - | chr3.1:66024689-66024708 | None:intergenic | 50.0% | |
| TTGAAGGCCTGTCTAGTGTC+GGG | + | chr3.1:66023934-66023953 | MS.gene001206:intron | 50.0% | |
| ! | GAACTTGTTCCATGGGTCTG+TGG | - | chr3.1:66024694-66024713 | None:intergenic | 50.0% |
| ! | TGTGCCGCTATTTGCAGCTA+TGG | + | chr3.1:66023783-66023802 | MS.gene001206:intron | 50.0% |
| AGAAAGGGGTTCGGAAGCAG+TGG | - | chr3.1:66023572-66023591 | None:intergenic | 55.0% | |
| CATAGCCGTGGCAAAGGACT+TGG | + | chr3.1:66024917-66024936 | MS.gene001206:intron | 55.0% | |
| CATGGTCAACCCCACGTTGA+AGG | + | chr3.1:66023691-66023710 | MS.gene001206:CDS | 55.0% | |
| CCGTGGCAAAGGACTTGGAA+AGG | + | chr3.1:66024922-66024941 | MS.gene001206:CDS | 55.0% | |
| GTGGGGTTGACCATGAGAGA+AGG | - | chr3.1:66023686-66023705 | None:intergenic | 55.0% | |
| TCACATGCCCGACACTAGAC+AGG | - | chr3.1:66023944-66023963 | None:intergenic | 55.0% | |
| ! | TAGTGTCGGGCATGTGACAC+CGG | + | chr3.1:66023947-66023966 | MS.gene001206:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 66023511 | 66027619 | 66023511 | ID=MS.gene001206 |
| chr3.1 | mRNA | 66023511 | 66027619 | 66023511 | ID=MS.gene001206.t1;Parent=MS.gene001206 |
| chr3.1 | exon | 66023511 | 66023712 | 66023511 | ID=MS.gene001206.t1.exon1;Parent=MS.gene001206.t1 |
| chr3.1 | CDS | 66023511 | 66023712 | 66023511 | ID=cds.MS.gene001206.t1;Parent=MS.gene001206.t1 |
| chr3.1 | exon | 66023800 | 66023887 | 66023800 | ID=MS.gene001206.t1.exon2;Parent=MS.gene001206.t1 |
| chr3.1 | CDS | 66023800 | 66023887 | 66023800 | ID=cds.MS.gene001206.t1;Parent=MS.gene001206.t1 |
| chr3.1 | exon | 66024922 | 66025054 | 66024922 | ID=MS.gene001206.t1.exon3;Parent=MS.gene001206.t1 |
| chr3.1 | CDS | 66024922 | 66025054 | 66024922 | ID=cds.MS.gene001206.t1;Parent=MS.gene001206.t1 |
| chr3.1 | exon | 66026807 | 66026845 | 66026807 | ID=MS.gene001206.t1.exon4;Parent=MS.gene001206.t1 |
| chr3.1 | CDS | 66026807 | 66026845 | 66026807 | ID=cds.MS.gene001206.t1;Parent=MS.gene001206.t1 |
| chr3.1 | exon | 66027539 | 66027619 | 66027539 | ID=MS.gene001206.t1.exon5;Parent=MS.gene001206.t1 |
| chr3.1 | CDS | 66027539 | 66027619 | 66027539 | ID=cds.MS.gene001206.t1;Parent=MS.gene001206.t1 |
| Gene Sequence |
| Protein sequence |
