Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23567.t1 | XP_003623155.2 | 98 | 99 | 2 | 0 | 1 | 99 | 1 | 99 | 6.10E-47 | 196.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23567.t1 | Q9SI54 | 92.8 | 97 | 7 | 0 | 1 | 97 | 1 | 97 | 1.7e-45 | 183.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23567.t1 | G7L5K6 | 98.0 | 99 | 2 | 0 | 1 | 99 | 1 | 99 | 4.4e-47 | 196.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051241 | MS.gene23567 | 0.845781 | 3.28E-59 | -1.69E-46 |
| MS.gene055555 | MS.gene23567 | 0.801103 | 1.05E-48 | -1.69E-46 |
| MS.gene057079 | MS.gene23567 | 0.804049 | 2.60E-49 | -1.69E-46 |
| MS.gene060917 | MS.gene23567 | 0.841574 | 4.38E-58 | -1.69E-46 |
| MS.gene06118 | MS.gene23567 | 0.806311 | 8.75E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23567.t1 | MTR_7g065100 | 97.980 | 99 | 2 | 0 | 1 | 99 | 1 | 99 | 8.54e-66 | 193 |
| MS.gene23567.t1 | MTR_8g036205 | 96.512 | 86 | 3 | 0 | 1 | 86 | 1 | 86 | 3.47e-53 | 162 |
| MS.gene23567.t1 | MTR_7g104930 | 38.028 | 71 | 35 | 1 | 10 | 80 | 9 | 70 | 1.06e-12 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23567.t1 | AT2G03870 | 91.837 | 98 | 8 | 0 | 1 | 98 | 1 | 98 | 4.16e-61 | 181 |
| MS.gene23567.t1 | AT2G03870 | 91.837 | 98 | 8 | 0 | 1 | 98 | 1 | 98 | 4.16e-61 | 181 |
| MS.gene23567.t1 | AT2G23930 | 42.254 | 71 | 32 | 2 | 10 | 80 | 9 | 70 | 3.72e-13 | 59.7 |
| MS.gene23567.t1 | AT3G11500 | 39.437 | 71 | 34 | 1 | 10 | 80 | 9 | 70 | 2.23e-12 | 57.8 |
| MS.gene23567.t1 | AT3G11500 | 39.437 | 71 | 34 | 1 | 10 | 80 | 9 | 70 | 2.23e-12 | 57.8 |
Find 27 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGTGACAGGTACTCTAAA+AGG | 0.295589 | 8.4:+61188780 | MS.gene23567:intron |
| TTAGCAAAATTTGTTGATAA+AGG | 0.301879 | 8.4:+61186744 | MS.gene23567:CDS |
| TTGTCGCAATGCAGGTTTGC+AGG | 0.321708 | 8.4:+61190611 | MS.gene23567:intron |
| TACAATTAAGCCAAGACTTC+TGG | 0.324979 | 8.4:-61189938 | None:intergenic |
| GGTGTTCAAGTCAAGCTTAC+TGG | 0.353916 | 8.4:+61186765 | MS.gene23567:CDS |
| TCTTGAGGCAGATGGGGCCT+AGG | 0.394260 | 8.4:+61190693 | MS.gene23567:CDS |
| CCAGGACAAGGTTAAGTAAC+TGG | 0.396790 | 8.4:-61188809 | None:intergenic |
| TGGGAGGAAAGAAACTGTTC+TGG | 0.428213 | 8.4:+61186719 | MS.gene23567:CDS |
| GCCCCATCTGCCTCAAGAAA+GGG | 0.437926 | 8.4:-61190688 | None:intergenic |
| GGCCCCATCTGCCTCAAGAA+AGG | 0.483618 | 8.4:-61190689 | None:intergenic |
| AACCCCTTTCTTGAGGCAGA+TGG | 0.486249 | 8.4:+61190685 | MS.gene23567:CDS |
| ACCCCTTTCTTGAGGCAGAT+GGG | 0.488188 | 8.4:+61190686 | MS.gene23567:CDS |
| CCCCTTTCTTGAGGCAGATG+GGG | 0.488254 | 8.4:+61190687 | MS.gene23567:CDS |
| CCAGTTACTTAACCTTGTCC+TGG | 0.506664 | 8.4:+61188809 | MS.gene23567:CDS |
| TGTCGCAATGCAGGTTTGCA+GGG | 0.521696 | 8.4:+61190612 | MS.gene23567:intron |
| TAGTGACAGGTACTCTAAAA+GGG | 0.532671 | 8.4:+61188781 | MS.gene23567:intron |
| ACAGATCAGACCAGAAGTCT+TGG | 0.544721 | 8.4:+61189928 | MS.gene23567:CDS |
| AAGCTTACTGGTGGCAGACA+AGG | 0.544738 | 8.4:+61186777 | MS.gene23567:CDS |
| AAAACTCAACAGCTTCATCC+AGG | 0.561824 | 8.4:-61188827 | None:intergenic |
| ATGCTTGTGTCGCCAACTGA+TGG | 0.586363 | 8.4:+61190646 | MS.gene23567:CDS |
| GTCGCAATGCAGGTTTGCAG+GGG | 0.591955 | 8.4:+61190613 | MS.gene23567:intron |
| GATTGCAAACCCCTTTCTTG+AGG | 0.598586 | 8.4:+61190678 | MS.gene23567:CDS |
| TGTGTCGCCAACTGATGGTA+CGG | 0.598668 | 8.4:+61190651 | MS.gene23567:CDS |
| ATCTCGTCCGTACCATCAGT+TGG | 0.614027 | 8.4:-61190658 | None:intergenic |
| CCCCATCTGCCTCAAGAAAG+GGG | 0.629232 | 8.4:-61190687 | None:intergenic |
| CAACAGCTTCATCCAGGACA+AGG | 0.654174 | 8.4:-61188821 | None:intergenic |
| GTTCAAGTCAAGCTTACTGG+TGG | 0.669583 | 8.4:+61186768 | MS.gene23567:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATAAAAAAGAGAA+AGG | - | chr8.4:61186818-61186837 | None:intergenic | 10.0% |
| !! | TAAAATAAAGAAAAGAAATT+AGG | - | chr8.4:61186689-61186708 | None:intergenic | 10.0% |
| !! | TTGATTTAACAATAAATTTA+AGG | + | chr8.4:61187435-61187454 | MS.gene23567:intron | 10.0% |
| !! | TTTAAGAAAATGAAAATATT+TGG | - | chr8.4:61187662-61187681 | None:intergenic | 10.0% |
| !!! | AAATTTTTTTATTCAAAAGA+TGG | - | chr8.4:61187787-61187806 | None:intergenic | 10.0% |
| !! | ATGCAAAAAAAAAAAAAACA+TGG | - | chr8.4:61188884-61188903 | None:intergenic | 15.0% |
| !! | TATTTATTTCAATGTGTTAT+AGG | - | chr8.4:61188986-61189005 | None:intergenic | 15.0% |
| !!! | AAATGTTTTCTTATTTGTTT+TGG | + | chr8.4:61189417-61189436 | MS.gene23567:intron | 15.0% |
| !!! | CAAAATTCATATATTTGTTT+TGG | - | chr8.4:61190536-61190555 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTGTTTTGTTTTA+AGG | + | chr8.4:61188169-61188188 | MS.gene23567:intron | 15.0% |
| !!! | TTATGTTTTTAAAAAAGAGA+AGG | - | chr8.4:61189985-61190004 | None:intergenic | 15.0% |
| !!! | TTGATTTGCTTTTAATATTA+TGG | + | chr8.4:61187929-61187948 | MS.gene23567:intron | 15.0% |
| !!! | TTTATTTTATTTTTCAGTCT+GGG | + | chr8.4:61186700-61186719 | MS.gene23567:intron | 15.0% |
| !!! | TTTGTTTTTGAAGAAAAAAA+GGG | + | chr8.4:61189074-61189093 | MS.gene23567:intron | 15.0% |
| !! | AAAATGAAAATATTTGGATG+AGG | - | chr8.4:61187656-61187675 | None:intergenic | 20.0% |
| !! | AAACAAAAAAAACATACACA+AGG | - | chr8.4:61188162-61188181 | None:intergenic | 20.0% |
| !! | AAACAAAAAAATGTCAACTT+AGG | - | chr8.4:61189239-61189258 | None:intergenic | 20.0% |
| !! | AAACCTTGTTAAAATATAGA+AGG | + | chr8.4:61189135-61189154 | MS.gene23567:intron | 20.0% |
| !! | AAAGTAAACATTGAAGATTA+TGG | - | chr8.4:61188721-61188740 | None:intergenic | 20.0% |
| !! | AAATGAAAATATTTGGATGA+GGG | - | chr8.4:61187655-61187674 | None:intergenic | 20.0% |
| !! | AATGTAAAATGATACATGTT+TGG | + | chr8.4:61187395-61187414 | MS.gene23567:intron | 20.0% |
| !! | AGAATTGAATTTATGATGTT+TGG | - | chr8.4:61187550-61187569 | None:intergenic | 20.0% |
| !! | ATTAAAGCTAAATATACACA+AGG | - | chr8.4:61189525-61189544 | None:intergenic | 20.0% |
| !! | ATTCCTTATTGATAAAACAT+TGG | + | chr8.4:61190056-61190075 | MS.gene23567:intron | 20.0% |
| !! | CAATAAACATAAAGTAAGTT+TGG | - | chr8.4:61188624-61188643 | None:intergenic | 20.0% |
| !! | GAATTGAATTTATGATGTTT+GGG | - | chr8.4:61187549-61187568 | None:intergenic | 20.0% |
| !! | TATTGATAAAACATTGGAAA+TGG | + | chr8.4:61190062-61190081 | MS.gene23567:intron | 20.0% |
| !! | TGGATACATTCATATAAATA+GGG | + | chr8.4:61186890-61186909 | MS.gene23567:intron | 20.0% |
| !! | TTAAAGCTAAATATACACAA+GGG | - | chr8.4:61189524-61189543 | None:intergenic | 20.0% |
| !! | TTGGATACATTCATATAAAT+AGG | + | chr8.4:61186889-61186908 | MS.gene23567:intron | 20.0% |
| !!! | AAAATAAAACACATGGATTT+TGG | - | chr8.4:61189875-61189894 | None:intergenic | 20.0% |
| !!! | AACAAATATATGAATTTTGC+TGG | + | chr8.4:61190537-61190556 | MS.gene23567:intron | 20.0% |
| !!! | ACAAATATATGAATTTTGCT+GGG | + | chr8.4:61190538-61190557 | MS.gene23567:intron | 20.0% |
| !!! | AGCTTTTTATCTGAAATAAT+TGG | + | chr8.4:61188228-61188247 | MS.gene23567:intron | 20.0% |
| !!! | ATAATTGATTTTGACATGTT+TGG | - | chr8.4:61187612-61187631 | None:intergenic | 20.0% |
| !!! | CTTTATTTTATTTTTCAGTC+TGG | + | chr8.4:61186699-61186718 | MS.gene23567:intron | 20.0% |
| !!! | CTTTGTTTTTGAAGAAAAAA+AGG | + | chr8.4:61189073-61189092 | MS.gene23567:intron | 20.0% |
| !!! | GCTTTTTATCTGAAATAATT+GGG | + | chr8.4:61188229-61188248 | MS.gene23567:intron | 20.0% |
| !!! | TCTTATCATTAAATTGATTC+TGG | + | chr8.4:61186849-61186868 | MS.gene23567:intron | 20.0% |
| !!! | TTAGCAAAATTTGTTGATAA+AGG | + | chr8.4:61186744-61186763 | MS.gene23567:CDS | 20.0% |
| !!! | TTATGGATATTCTTATTTGT+AGG | + | chr8.4:61187946-61187965 | MS.gene23567:intron | 20.0% |
| !!! | TTTCCAATGTTTTATCAATA+AGG | - | chr8.4:61190062-61190081 | None:intergenic | 20.0% |
| !!! | TTTCCTTCTATATTTTAACA+AGG | - | chr8.4:61189141-61189160 | None:intergenic | 20.0% |
| ! | AAAAAAAAAAAACATGGAGC+TGG | - | chr8.4:61188878-61188897 | None:intergenic | 25.0% |
| ! | AAAGTTCATCTAATTCATTC+AGG | + | chr8.4:61189033-61189052 | MS.gene23567:intron | 25.0% |
| ! | AAATACAGCTTGTATAGAAA+GGG | + | chr8.4:61189001-61189020 | MS.gene23567:intron | 25.0% |
| ! | AAGTAAGATAAATATGCGAA+AGG | - | chr8.4:61186620-61186639 | None:intergenic | 25.0% |
| ! | AAGTTCATCTAATTCATTCA+GGG | + | chr8.4:61189034-61189053 | MS.gene23567:intron | 25.0% |
| ! | AATAATTGCTCTATTTGGAT+TGG | + | chr8.4:61188366-61188385 | MS.gene23567:intron | 25.0% |
| ! | AATACTTGTTTCAGAACTTA+TGG | + | chr8.4:61188422-61188441 | MS.gene23567:intron | 25.0% |
| ! | AATATTACCTAAGCACTTAA+AGG | + | chr8.4:61189272-61189291 | MS.gene23567:intron | 25.0% |
| ! | ATAATTGCTCTATTTGGATT+GGG | + | chr8.4:61188367-61188386 | MS.gene23567:intron | 25.0% |
| ! | ATATTACCTAAGCACTTAAA+GGG | + | chr8.4:61189273-61189292 | MS.gene23567:intron | 25.0% |
| ! | CAAAATCAATTATACATGTG+TGG | + | chr8.4:61187619-61187638 | MS.gene23567:intron | 25.0% |
| ! | CACAGTTAATAACATACATA+AGG | - | chr8.4:61188200-61188219 | None:intergenic | 25.0% |
| ! | CAGATGAATAGATAAGAAAA+GGG | + | chr8.4:61190148-61190167 | MS.gene23567:intron | 25.0% |
| ! | GATGAAATAATTGCTCTATT+TGG | + | chr8.4:61188361-61188380 | MS.gene23567:intron | 25.0% |
| ! | GGCTTAAAGTAATTTATGTT+TGG | + | chr8.4:61186870-61186889 | MS.gene23567:intron | 25.0% |
| ! | TAAATACAGCTTGTATAGAA+AGG | + | chr8.4:61189000-61189019 | MS.gene23567:intron | 25.0% |
| ! | TACAACAAAACAAATGTCTT+GGG | - | chr8.4:61190344-61190363 | None:intergenic | 25.0% |
| ! | TACATTCATATAAATAGGGT+TGG | + | chr8.4:61186894-61186913 | MS.gene23567:intron | 25.0% |
| ! | TCAGATGAATAGATAAGAAA+AGG | + | chr8.4:61190147-61190166 | MS.gene23567:intron | 25.0% |
| ! | TGATTCTGTAAAATTGATTG+TGG | + | chr8.4:61186978-61186997 | MS.gene23567:intron | 25.0% |
| ! | TTGAAAAAATAAGTACGAGT+AGG | - | chr8.4:61189735-61189754 | None:intergenic | 25.0% |
| !! | AAACGAGAGATATTCTAAAA+AGG | + | chr8.4:61188485-61188504 | MS.gene23567:intron | 25.0% |
| !! | AACTAAAAGTGATTTGTGTT+TGG | - | chr8.4:61187233-61187252 | None:intergenic | 25.0% |
| !! | AATGTTTACTTTAGAGATGA+GGG | + | chr8.4:61188729-61188748 | MS.gene23567:intron | 25.0% |
| !! | AATTCAAATTTTGCCAAGAA+TGG | - | chr8.4:61190402-61190421 | None:intergenic | 25.0% |
| !! | AATTTGTCACAAAGATGTTT+TGG | + | chr8.4:61190091-61190110 | MS.gene23567:intron | 25.0% |
| !! | ACTAAAAGTGATTTGTGTTT+GGG | - | chr8.4:61187232-61187251 | None:intergenic | 25.0% |
| !! | ATGGTTCTTTCAATTTTCAA+TGG | + | chr8.4:61188665-61188684 | MS.gene23567:intron | 25.0% |
| !! | ATTCAAATTTTGCCAAGAAT+GGG | - | chr8.4:61190401-61190420 | None:intergenic | 25.0% |
| !! | CAAGTAAAATCAATTTTGGA+GGG | - | chr8.4:61187126-61187145 | None:intergenic | 25.0% |
| !! | GCTTCAAGTAAAATCAATTT+TGG | - | chr8.4:61187130-61187149 | None:intergenic | 25.0% |
| !! | GTATTTTGTAGAATTGCTTT+TGG | - | chr8.4:61187270-61187289 | None:intergenic | 25.0% |
| !! | TCAAGTAAAATCAATTTTGG+AGG | - | chr8.4:61187127-61187146 | None:intergenic | 25.0% |
| !! | TTAATACAATTCTTTGCTGT+GGG | + | chr8.4:61188339-61188358 | MS.gene23567:intron | 25.0% |
| !!! | ATTTGTTTTGTTGTACAAGT+AGG | + | chr8.4:61190349-61190368 | MS.gene23567:intron | 25.0% |
| !!! | GTGAGTTTTTCAAATTGTAA+GGG | + | chr8.4:61188251-61188270 | MS.gene23567:intron | 25.0% |
| !!! | GTTTTTAAAAAAGAGAAGGT+GGG | - | chr8.4:61189981-61190000 | None:intergenic | 25.0% |
| !!! | TCTATTTTAAGAGTGAAACT+AGG | + | chr8.4:61189700-61189719 | MS.gene23567:intron | 25.0% |
| !!! | TGTTTTTAAAAAAGAGAAGG+TGG | - | chr8.4:61189982-61190001 | None:intergenic | 25.0% |
| !!! | TTTCCTATTGAACCATTTTT+GGG | + | chr8.4:61188280-61188299 | MS.gene23567:intron | 25.0% |
| !!! | TTTTAATTCATCACCCATTT+TGG | - | chr8.4:61189326-61189345 | None:intergenic | 25.0% |
| AAGGGAAAACACTTACTAAT+TGG | + | chr8.4:61190166-61190185 | MS.gene23567:intron | 30.0% | |
| ACAACCTTGTAAAATCATCT+CGG | + | chr8.4:61189669-61189688 | MS.gene23567:intron | 30.0% | |
| AGTTAAAGCAGTATCAATGT+GGG | - | chr8.4:61189385-61189404 | None:intergenic | 30.0% | |
| ATGATCAGTACTAGGAAAAA+GGG | + | chr8.4:61190289-61190308 | MS.gene23567:intron | 30.0% | |
| CAGCACAAAAATAAAACACA+TGG | - | chr8.4:61189882-61189901 | None:intergenic | 30.0% | |
| CTACAATTTCTAACTGTGTT+TGG | + | chr8.4:61187011-61187030 | MS.gene23567:intron | 30.0% | |
| CTTAATACAATTCTTTGCTG+TGG | + | chr8.4:61188338-61188357 | MS.gene23567:intron | 30.0% | |
| GTACAACAAAACAAATGTCT+TGG | - | chr8.4:61190345-61190364 | None:intergenic | 30.0% | |
| GTTTGCTTGCAAATCTTTAT+TGG | + | chr8.4:61190207-61190226 | MS.gene23567:intron | 30.0% | |
| TAAAAAAGAGAAAGGTGAGT+TGG | - | chr8.4:61186810-61186829 | None:intergenic | 30.0% | |
| TTATAGGAAAGATGAAGTCA+TGG | - | chr8.4:61188970-61188989 | None:intergenic | 30.0% | |
| ! | ACTATATAGTTACTTTGCAG+AGG | - | chr8.4:61189785-61189804 | None:intergenic | 30.0% |
| ! | ATATTCTAAAAAGGTTGAGG+TGG | + | chr8.4:61188494-61188513 | MS.gene23567:intron | 30.0% |
| ! | ATGTTTACTTTAGAGATGAG+GGG | + | chr8.4:61188730-61188749 | MS.gene23567:intron | 30.0% |
| ! | ATTTGTTGAATTGTAGTGAC+AGG | + | chr8.4:61188768-61188787 | MS.gene23567:intron | 30.0% |
| ! | CAATGTTTACTTTAGAGATG+AGG | + | chr8.4:61188728-61188747 | MS.gene23567:intron | 30.0% |
| ! | CTAAAAGTGATTTGTGTTTG+GGG | - | chr8.4:61187231-61187250 | None:intergenic | 30.0% |
| ! | CTATATAGTTACTTTGCAGA+GGG | - | chr8.4:61189784-61189803 | None:intergenic | 30.0% |
| ! | CTTTCCTATTGAACCATTTT+TGG | + | chr8.4:61188279-61188298 | MS.gene23567:intron | 30.0% |
| ! | GAGATATTCTAAAAAGGTTG+AGG | + | chr8.4:61188491-61188510 | MS.gene23567:intron | 30.0% |
| ! | TTCAAATTTTGCCAAGAATG+GGG | - | chr8.4:61190400-61190419 | None:intergenic | 30.0% |
| !! | GGTGAGTTTTTCAAATTGTA+AGG | + | chr8.4:61188250-61188269 | MS.gene23567:intron | 30.0% |
| !! | TACACCTCTAAAATCAATTC+TGG | - | chr8.4:61187054-61187073 | None:intergenic | 30.0% |
| !! | TTCCTATTGAACCATTTTTG+GGG | + | chr8.4:61188281-61188300 | MS.gene23567:intron | 30.0% |
| !! | TTTTCAATGGATTCTTGTCT+TGG | + | chr8.4:61188678-61188697 | MS.gene23567:intron | 30.0% |
| !!! | AAGCTACAATTTGTTGCTTT+TGG | - | chr8.4:61187480-61187499 | None:intergenic | 30.0% |
| !!! | ATTTTATTTTTCAGTCTGGG+AGG | + | chr8.4:61186703-61186722 | MS.gene23567:intron | 30.0% |
| !!! | TAGGTCAATATGTCTTGTTT+TGG | + | chr8.4:61187965-61187984 | MS.gene23567:intron | 30.0% |
| AAAAGTCCCTTTAAGTGCTT+AGG | - | chr8.4:61189282-61189301 | None:intergenic | 35.0% | |
| AATTCTTGTAGAAGCTGAAC+TGG | - | chr8.4:61187324-61187343 | None:intergenic | 35.0% | |
| AGAGTCAAAAGTGATTCTAG+AGG | - | chr8.4:61187577-61187596 | None:intergenic | 35.0% | |
| CACTTACTAATTGGAACTGA+TGG | + | chr8.4:61190175-61190194 | MS.gene23567:intron | 35.0% | |
| CTCAATACACTTGACATGAA+AGG | - | chr8.4:61189593-61189612 | None:intergenic | 35.0% | |
| GAAAGTTCAGTCATGCAATA+TGG | + | chr8.4:61189479-61189498 | MS.gene23567:intron | 35.0% | |
| GAGTTAAAGCAGTATCAATG+TGG | - | chr8.4:61189386-61189405 | None:intergenic | 35.0% | |
| GATGATCAGTACTAGGAAAA+AGG | + | chr8.4:61190288-61190307 | MS.gene23567:intron | 35.0% | |
| TAAACGTTTGTTCGCAGTTA+TGG | + | chr8.4:61188455-61188474 | MS.gene23567:intron | 35.0% | |
| TAACTGCGAACAAACGTTTA+AGG | - | chr8.4:61188455-61188474 | None:intergenic | 35.0% | |
| TACAATTAAGCCAAGACTTC+TGG | - | chr8.4:61189941-61189960 | None:intergenic | 35.0% | |
| TACCCCAAAAATGGTTCAAT+AGG | - | chr8.4:61188286-61188305 | None:intergenic | 35.0% | |
| ! | TAGTGACAGGTACTCTAAAA+GGG | + | chr8.4:61188781-61188800 | MS.gene23567:intron | 35.0% |
| ! | TGCGAAAGGTGATGAAATTT+TGG | - | chr8.4:61186606-61186625 | None:intergenic | 35.0% |
| ! | TGTAGTTTTCAGTGGATCAT+CGG | - | chr8.4:61189911-61189930 | None:intergenic | 35.0% |
| ! | TTTGCCGAGATGATTTTACA+AGG | - | chr8.4:61189676-61189695 | None:intergenic | 35.0% |
| !! | AGAATCACTTTTGACTCTCT+AGG | + | chr8.4:61187579-61187598 | MS.gene23567:intron | 35.0% |
| !! | GAAGCTGTTGAGTTTTTAAG+AGG | + | chr8.4:61188834-61188853 | MS.gene23567:CDS | 35.0% |
| !!! | AACCATTTTTGGGGTATTCT+TGG | + | chr8.4:61188290-61188309 | MS.gene23567:intron | 35.0% |
| AAAACTCAACAGCTTCATCC+AGG | - | chr8.4:61188830-61188849 | None:intergenic | 40.0% | |
| ACATGTGTCTTTGCAGTGTT+TGG | + | chr8.4:61187687-61187706 | MS.gene23567:intron | 40.0% | |
| CACCAAGAATACCCCAAAAA+TGG | - | chr8.4:61188295-61188314 | None:intergenic | 40.0% | |
| CATTCAGGGCATATGATTGT+TGG | + | chr8.4:61189048-61189067 | MS.gene23567:intron | 40.0% | |
| GAACCATAGCATGAACACAA+AGG | - | chr8.4:61188652-61188671 | None:intergenic | 40.0% | |
| GTAGTGACAGGTACTCTAAA+AGG | + | chr8.4:61188780-61188799 | MS.gene23567:intron | 40.0% | |
| TCTCCTTTGTGTTCATGCTA+TGG | + | chr8.4:61188646-61188665 | MS.gene23567:intron | 40.0% | |
| TGGCTTTCGCTATCACAATT+TGG | - | chr8.4:61189306-61189325 | None:intergenic | 40.0% | |
| TGTTTGGTATCTGTGTCTGT+CGG | + | chr8.4:61187703-61187722 | MS.gene23567:intron | 40.0% | |
| ! | CTCTATTTGGATTGGGTTCT+AGG | + | chr8.4:61188374-61188393 | MS.gene23567:intron | 40.0% |
| ! | GTAGTTTTCAGTGGATCATC+GGG | - | chr8.4:61189910-61189929 | None:intergenic | 40.0% |
| ! | GTCTGATCTGTAGTTTTCAG+TGG | - | chr8.4:61189919-61189938 | None:intergenic | 40.0% |
| ! | GTGATAGCGAAAGCCAAAAT+GGG | + | chr8.4:61189310-61189329 | MS.gene23567:intron | 40.0% |
| ! | TCAATGGATTCTTGTCTTGG+AGG | + | chr8.4:61188681-61188700 | MS.gene23567:intron | 40.0% |
| ! | TGTGATAGCGAAAGCCAAAA+TGG | + | chr8.4:61189309-61189328 | MS.gene23567:intron | 40.0% |
| !! | GGGTCCAGAATTGATTTTAG+AGG | + | chr8.4:61187047-61187066 | MS.gene23567:intron | 40.0% |
| !! | TCCTAGTACTGATCATCATG+TGG | - | chr8.4:61190285-61190304 | None:intergenic | 40.0% |
| !!! | CTAGTTTTACTCCCCATTCT+TGG | + | chr8.4:61190386-61190405 | MS.gene23567:intron | 40.0% |
| !!! | TGGATTGGGTTCTAGGTTTT+GGG | + | chr8.4:61188381-61188400 | MS.gene23567:intron | 40.0% |
| !!! | TTGGATTGGGTTCTAGGTTT+TGG | + | chr8.4:61188380-61188399 | MS.gene23567:intron | 40.0% |
| AAGCTGAACTGGTTGTGCAT+GGG | - | chr8.4:61187313-61187332 | None:intergenic | 45.0% | |
| ACAGATCAGACCAGAAGTCT+TGG | + | chr8.4:61189928-61189947 | MS.gene23567:CDS | 45.0% | |
| CCAGGACAAGGTTAAGTAAC+TGG | - | chr8.4:61188812-61188831 | None:intergenic | 45.0% | |
| CCAGTTACTTAACCTTGTCC+TGG | + | chr8.4:61188809-61188828 | MS.gene23567:CDS | 45.0% | |
| GATTGCAAACCCCTTTCTTG+AGG | + | chr8.4:61190678-61190697 | MS.gene23567:CDS | 45.0% | |
| GCATGACTGAACTTTCAAGC+AGG | - | chr8.4:61189475-61189494 | None:intergenic | 45.0% | |
| GCCACATGATGATCAGTACT+AGG | + | chr8.4:61190281-61190300 | MS.gene23567:intron | 45.0% | |
| GGTGTTCAAGTCAAGCTTAC+TGG | + | chr8.4:61186765-61186784 | MS.gene23567:CDS | 45.0% | |
| GTTCAAGTCAAGCTTACTGG+TGG | + | chr8.4:61186768-61186787 | MS.gene23567:CDS | 45.0% | |
| TCAGTACTAGGAAAAAGGGC+AGG | + | chr8.4:61190293-61190312 | MS.gene23567:intron | 45.0% | |
| TGGGAGGAAAGAAACTGTTC+TGG | + | chr8.4:61186719-61186738 | MS.gene23567:CDS | 45.0% | |
| ! | GGGATGACAAAGCAGGTTTT+GGG | + | chr8.4:61190558-61190577 | MS.gene23567:intron | 45.0% |
| ! | TGGGATGACAAAGCAGGTTT+TGG | + | chr8.4:61190557-61190576 | MS.gene23567:intron | 45.0% |
| ! | TGTTTGGTTCCACTTCTCGA+GGG | + | chr8.4:61187027-61187046 | MS.gene23567:intron | 45.0% |
| ! | TTTTGCTGGGATGACAAAGC+AGG | + | chr8.4:61190551-61190570 | MS.gene23567:intron | 45.0% |
| !! | AACTGCTTTTGTCGCAATGC+AGG | + | chr8.4:61190603-61190622 | MS.gene23567:intron | 45.0% |
| !!! | GATTGGGTTCTAGGTTTTGG+GGG | + | chr8.4:61188383-61188402 | MS.gene23567:intron | 45.0% |
| !!! | GGATTGGGTTCTAGGTTTTG+GGG | + | chr8.4:61188382-61188401 | MS.gene23567:intron | 45.0% |
| !!! | AATTTTTTAAGAAAATTAAA+AGG | - | chr8.4:61189100-61189119 | None:intergenic | 5.0% |
| !!! | ATTTTGAAATTTATAAATTT+TGG | + | chr8.4:61188932-61188951 | MS.gene23567:intron | 5.0% |
| !!! | TTTTTTAAAAACATAATTTA+TGG | + | chr8.4:61189989-61190008 | MS.gene23567:intron | 5.0% |
| AACCCCTTTCTTGAGGCAGA+TGG | + | chr8.4:61190685-61190704 | MS.gene23567:CDS | 50.0% | |
| AAGCTTACTGGTGGCAGACA+AGG | + | chr8.4:61186777-61186796 | MS.gene23567:CDS | 50.0% | |
| AATTCTGGACCCTCGAGAAG+TGG | - | chr8.4:61187039-61187058 | None:intergenic | 50.0% | |
| ACCCCTTTCTTGAGGCAGAT+GGG | + | chr8.4:61190686-61190705 | MS.gene23567:CDS | 50.0% | |
| AGCTGAACTGGTTGTGCATG+GGG | - | chr8.4:61187312-61187331 | None:intergenic | 50.0% | |
| ATCTCGTCCGTACCATCAGT+TGG | - | chr8.4:61190661-61190680 | None:intergenic | 50.0% | |
| ATGCTTGTGTCGCCAACTGA+TGG | + | chr8.4:61190646-61190665 | MS.gene23567:CDS | 50.0% | |
| CAACAGCTTCATCCAGGACA+AGG | - | chr8.4:61188824-61188843 | None:intergenic | 50.0% | |
| GAAGCTGAACTGGTTGTGCA+TGG | - | chr8.4:61187314-61187333 | None:intergenic | 50.0% | |
| TGTCGCAATGCAGGTTTGCA+GGG | + | chr8.4:61190612-61190631 | MS.gene23567:intron | 50.0% | |
| TGTGTCGCCAACTGATGGTA+CGG | + | chr8.4:61190651-61190670 | MS.gene23567:CDS | 50.0% | |
| TTGTCGCAATGCAGGTTTGC+AGG | + | chr8.4:61190611-61190630 | MS.gene23567:intron | 50.0% | |
| ! | GGGGTATTCTTGGTGAGCAT+TGG | + | chr8.4:61188300-61188319 | MS.gene23567:intron | 50.0% |
| ! | GTGTTTGGTTCCACTTCTCG+AGG | + | chr8.4:61187026-61187045 | MS.gene23567:intron | 50.0% |
| CCCCATCTGCCTCAAGAAAG+GGG | - | chr8.4:61190690-61190709 | None:intergenic | 55.0% | |
| CCCCTTTCTTGAGGCAGATG+GGG | + | chr8.4:61190687-61190706 | MS.gene23567:CDS | 55.0% | |
| GCCCCATCTGCCTCAAGAAA+GGG | - | chr8.4:61190691-61190710 | None:intergenic | 55.0% | |
| GTCGCAATGCAGGTTTGCAG+GGG | + | chr8.4:61190613-61190632 | MS.gene23567:intron | 55.0% | |
| GGCCCCATCTGCCTCAAGAA+AGG | - | chr8.4:61190692-61190711 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 61186587 | 61190714 | 61186587 | ID=MS.gene23567 |
| chr8.4 | mRNA | 61186587 | 61190714 | 61186587 | ID=MS.gene23567.t1;Parent=MS.gene23567 |
| chr8.4 | exon | 61186587 | 61186589 | 61186587 | ID=MS.gene23567.t1.exon1;Parent=MS.gene23567.t1 |
| chr8.4 | CDS | 61186587 | 61186589 | 61186587 | ID=cds.MS.gene23567.t1;Parent=MS.gene23567.t1 |
| chr8.4 | exon | 61186717 | 61186798 | 61186717 | ID=MS.gene23567.t1.exon2;Parent=MS.gene23567.t1 |
| chr8.4 | CDS | 61186717 | 61186798 | 61186717 | ID=cds.MS.gene23567.t1;Parent=MS.gene23567.t1 |
| chr8.4 | exon | 61188784 | 61188855 | 61188784 | ID=MS.gene23567.t1.exon3;Parent=MS.gene23567.t1 |
| chr8.4 | CDS | 61188784 | 61188855 | 61188784 | ID=cds.MS.gene23567.t1;Parent=MS.gene23567.t1 |
| chr8.4 | exon | 61189905 | 61189957 | 61189905 | ID=MS.gene23567.t1.exon4;Parent=MS.gene23567.t1 |
| chr8.4 | CDS | 61189905 | 61189957 | 61189905 | ID=cds.MS.gene23567.t1;Parent=MS.gene23567.t1 |
| chr8.4 | exon | 61190625 | 61190714 | 61190625 | ID=MS.gene23567.t1.exon5;Parent=MS.gene23567.t1 |
| chr8.4 | CDS | 61190625 | 61190714 | 61190625 | ID=cds.MS.gene23567.t1;Parent=MS.gene23567.t1 |
| Gene Sequence |
| Protein sequence |
