AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051172

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051172.t1 MTR_7g065100 97.959 98 2 0 1 98 2 99 7.12e-65 191
MS.gene051172.t1 MTR_8g036205 96.471 85 3 0 1 85 2 86 2.76e-52 160
MS.gene051172.t1 MTR_7g104930 38.028 71 35 1 9 79 9 70 9.65e-13 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051172.t1 AT2G03870 91.753 97 8 0 1 97 2 98 3.92e-60 179
MS.gene051172.t1 AT2G03870 91.753 97 8 0 1 97 2 98 3.92e-60 179
MS.gene051172.t1 AT2G23930 42.254 71 32 2 9 79 9 70 3.23e-13 59.7
MS.gene051172.t1 AT3G11500 39.437 71 34 1 9 79 9 70 2.04e-12 57.8
MS.gene051172.t1 AT3G11500 39.437 71 34 1 9 79 9 70 2.04e-12 57.8

Find 27 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGTGACAGGTACTCTAAA+AGG 0.295589 8.2:+62958128 MS.gene051172:intron
TTAGCAAAATTTGTTGATAA+AGG 0.301879 8.2:+62956090 MS.gene051172:CDS
TTGTCGCAATGCAGGTTTGC+AGG 0.321708 8.2:+62960042 MS.gene051172:intron
TACAATCAAGCCAAGACTTC+TGG 0.348898 8.2:-62959336 None:intergenic
GGTGTTCAAGTCAAGCTTAC+TGG 0.353916 8.2:+62956111 MS.gene051172:CDS
TCTTGAGGCAGATGGGGCCT+AGG 0.394260 8.2:+62960124 MS.gene051172:CDS
CCAGGACAAGGTTAAGTAAC+TGG 0.396790 8.2:-62958157 None:intergenic
TGGGAGGAAAGAAACTGTTC+TGG 0.428213 8.2:+62956065 MS.gene051172:CDS
GCCCCATCTGCCTCAAGAAA+GGG 0.437926 8.2:-62960119 None:intergenic
GGCCCCATCTGCCTCAAGAA+AGG 0.483618 8.2:-62960120 None:intergenic
AACCCCTTTCTTGAGGCAGA+TGG 0.486249 8.2:+62960116 MS.gene051172:CDS
ACCCCTTTCTTGAGGCAGAT+GGG 0.488188 8.2:+62960117 MS.gene051172:CDS
CCCCTTTCTTGAGGCAGATG+GGG 0.488254 8.2:+62960118 MS.gene051172:CDS
CCAGTTACTTAACCTTGTCC+TGG 0.506664 8.2:+62958157 MS.gene051172:CDS
TGTCGCAATGCAGGTTTGCA+GGG 0.521696 8.2:+62960043 MS.gene051172:intron
TAGTGACAGGTACTCTAAAA+GGG 0.532671 8.2:+62958129 MS.gene051172:intron
ACAGATCAGACCAGAAGTCT+TGG 0.544721 8.2:+62959326 MS.gene051172:CDS
AAGCTTACTGGTGGCAGACA+AGG 0.544738 8.2:+62956123 MS.gene051172:CDS
AAAACTCAACAGCTTCATCC+AGG 0.561824 8.2:-62958175 None:intergenic
ATGCTTGTGTCGCCAACTGA+TGG 0.586363 8.2:+62960077 MS.gene051172:CDS
GTCGCAATGCAGGTTTGCAG+GGG 0.591955 8.2:+62960044 MS.gene051172:intron
GATTGCAAACCCCTTTCTTG+AGG 0.598586 8.2:+62960109 MS.gene051172:CDS
TGTGTCGCCAACTGATGGTA+CGG 0.598668 8.2:+62960082 MS.gene051172:CDS
ATCTCGTCCGTACCATCAGT+TGG 0.614027 8.2:-62960089 None:intergenic
CCCCATCTGCCTCAAGAAAG+GGG 0.629232 8.2:-62960118 None:intergenic
CAACAGCTTCATCCAGGACA+AGG 0.654174 8.2:-62958169 None:intergenic
GTTCAAGTCAAGCTTACTGG+TGG 0.669583 8.2:+62956114 MS.gene051172:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATAAAAAAGAGAA+AGG - chr8.2:62956164-62956183 None:intergenic 10.0%
!! CAAAAAAAAAAAAAAAAACA+TGG - chr8.2:62958232-62958251 None:intergenic 10.0%
!! TTGATTTAACAATAAATTTA+AGG + chr8.2:62956779-62956798 MS.gene051172:intron 10.0%
!!! AAATTTTTTTATTCAAAAGA+TGG - chr8.2:62957131-62957150 None:intergenic 10.0%
!! TATTTATTTCAATGTGTTAT+AGG - chr8.2:62958381-62958400 None:intergenic 15.0%
!! TTTAAGAAAATGAAAATGTT+TGG - chr8.2:62957006-62957025 None:intergenic 15.0%
!!! AAATGTTTTCTTATTTGTTT+TGG + chr8.2:62958815-62958834 MS.gene051172:intron 15.0%
!!! CAAAATTCATATATTTGTTT+TGG - chr8.2:62959967-62959986 None:intergenic 15.0%
!!! GTTTTTTTTGTTTTGTTTTA+AGG + chr8.2:62957513-62957532 MS.gene051172:intron 15.0%
!!! TTATGTTTTTAAAAAAGAGA+AGG - chr8.2:62959383-62959402 None:intergenic 15.0%
!!! TTGATTTGCTTTTAATATTA+TGG + chr8.2:62957273-62957292 MS.gene051172:intron 15.0%
!!! TTTGTTTTTGAAGAAAAAAA+GGG + chr8.2:62958469-62958488 MS.gene051172:intron 15.0%
!! AAACAAAAAAAACATACACA+AGG - chr8.2:62957506-62957525 None:intergenic 20.0%
!! AAACAAAAAAATGTCAACTT+AGG - chr8.2:62958634-62958653 None:intergenic 20.0%
!! AAACCTTGTTAAAATATAGA+AGG + chr8.2:62958530-62958549 MS.gene051172:intron 20.0%
!! AAAGTAAACATTGAAGATTA+TGG - chr8.2:62958069-62958088 None:intergenic 20.0%
!! AAATACAGTTTGTATAGAAA+GGG + chr8.2:62958396-62958415 MS.gene051172:intron 20.0%
!! AATGTAAAATGATACATGTT+TGG + chr8.2:62956739-62956758 MS.gene051172:intron 20.0%
!! AGAATTGAATTTATGATGTT+TGG - chr8.2:62956894-62956913 None:intergenic 20.0%
!! ATTAAAGCTAAATATACACA+AGG - chr8.2:62958923-62958942 None:intergenic 20.0%
!! ATTCCTTATTGATAAAACAT+TGG + chr8.2:62959454-62959473 MS.gene051172:intron 20.0%
!! CAATAAACATAAAGTAAGTT+TGG - chr8.2:62957972-62957991 None:intergenic 20.0%
!! GAATTGAATTTATGATGTTT+GGG - chr8.2:62956893-62956912 None:intergenic 20.0%
!! TAAATACAGTTTGTATAGAA+AGG + chr8.2:62958395-62958414 MS.gene051172:intron 20.0%
!! TATTGATAAAACATTGGAAA+TGG + chr8.2:62959460-62959479 MS.gene051172:intron 20.0%
!! TGGATACATTCATATAAATA+GGG + chr8.2:62956236-62956255 MS.gene051172:intron 20.0%
!! TTAAAGCTAAATATACACAA+GGG - chr8.2:62958922-62958941 None:intergenic 20.0%
!! TTGGATACATTCATATAAAT+AGG + chr8.2:62956235-62956254 MS.gene051172:intron 20.0%
!!! AAAATAAAACACATGGATTT+TGG - chr8.2:62959273-62959292 None:intergenic 20.0%
!!! AAATGAGAGATATTCTAAAA+AGG + chr8.2:62957829-62957848 MS.gene051172:intron 20.0%
!!! AACAAATATATGAATTTTGC+TGG + chr8.2:62959968-62959987 MS.gene051172:intron 20.0%
!!! ACAAATATATGAATTTTGCT+GGG + chr8.2:62959969-62959988 MS.gene051172:intron 20.0%
!!! AGCTTTTTATCTGAAATAAT+TGG + chr8.2:62957572-62957591 MS.gene051172:intron 20.0%
!!! ATAATTGATTTTGACATGTT+TGG - chr8.2:62956956-62956975 None:intergenic 20.0%
!!! CATCTTTCCTTTATAAATTT+TGG + chr8.2:62958327-62958346 MS.gene051172:intron 20.0%
!!! CTTTGTTTTTGAAGAAAAAA+AGG + chr8.2:62958468-62958487 MS.gene051172:intron 20.0%
!!! GCTTTTTATCTGAAATAATT+GGG + chr8.2:62957573-62957592 MS.gene051172:intron 20.0%
!!! GTGAGTTTTTTAAATTGTAA+GGG + chr8.2:62957595-62957614 MS.gene051172:intron 20.0%
!!! TCTTATCATTAAATTGATTC+TGG + chr8.2:62956195-62956214 MS.gene051172:intron 20.0%
!!! TTAATACAATTATTTGCTGT+GGG + chr8.2:62957683-62957702 MS.gene051172:intron 20.0%
!!! TTAGCAAAATTTGTTGATAA+AGG + chr8.2:62956090-62956109 MS.gene051172:CDS 20.0%
!!! TTATGGATATTCTTATTTGT+AGG + chr8.2:62957290-62957309 MS.gene051172:intron 20.0%
!!! TTTCCAATGTTTTATCAATA+AGG - chr8.2:62959460-62959479 None:intergenic 20.0%
!!! TTTCCTTCTATATTTTAACA+AGG - chr8.2:62958536-62958555 None:intergenic 20.0%
! AAAAAAAAAAAACATGGAGC+TGG - chr8.2:62958226-62958245 None:intergenic 25.0%
! AAAATGAAAATGTTTGGATG+AGG - chr8.2:62957000-62957019 None:intergenic 25.0%
! AAAGTTCATCTAATTCATTC+AGG + chr8.2:62958428-62958447 MS.gene051172:intron 25.0%
! AAATGAAAATGTTTGGATGA+GGG - chr8.2:62956999-62957018 None:intergenic 25.0%
! AAGTTCATCTAATTCATTCA+GGG + chr8.2:62958429-62958448 MS.gene051172:intron 25.0%
! AATAATTGCTCTATTTGGAT+TGG + chr8.2:62957710-62957729 MS.gene051172:intron 25.0%
! AATACTTGTTTCAGAACTTA+TGG + chr8.2:62957766-62957785 MS.gene051172:intron 25.0%
! ATAATTGCTCTATTTGGATT+GGG + chr8.2:62957711-62957730 MS.gene051172:intron 25.0%
! ATTACCTAATAAGCACTTAA+AGG + chr8.2:62958670-62958689 MS.gene051172:intron 25.0%
! ATTCACTCAAAATCAATTCT+CGG - chr8.2:62956305-62956324 None:intergenic 25.0%
! CAAAATCAATTATACATGTG+TGG + chr8.2:62956963-62956982 MS.gene051172:intron 25.0%
! CACAGTTAATAACATACATA+AGG - chr8.2:62957544-62957563 None:intergenic 25.0%
! CAGATGAATAGATAAGAAAA+GGG + chr8.2:62959546-62959565 MS.gene051172:intron 25.0%
! GATGAAATAATTGCTCTATT+TGG + chr8.2:62957705-62957724 MS.gene051172:intron 25.0%
! GGCTTAAAGTAATTTATGTT+TGG + chr8.2:62956216-62956235 MS.gene051172:intron 25.0%
! TACAACAAAACAAATGTCTT+GGG - chr8.2:62959742-62959761 None:intergenic 25.0%
! TACATTCATATAAATAGGGT+TGG + chr8.2:62956240-62956259 MS.gene051172:intron 25.0%
! TAGCGATCCAAAATTTATAA+AGG - chr8.2:62958293-62958312 None:intergenic 25.0%
! TCAGATGAATAGATAAGAAA+AGG + chr8.2:62959545-62959564 MS.gene051172:intron 25.0%
! TGATTCTGTAAAATTGATTG+TGG + chr8.2:62956325-62956344 MS.gene051172:intron 25.0%
! TTACCTAATAAGCACTTAAA+GGG + chr8.2:62958671-62958690 MS.gene051172:intron 25.0%
! TTGAAAAAATAAGTACGAGT+AGG - chr8.2:62959133-62959152 None:intergenic 25.0%
!! AACTAAAAGTGATTTGTGTT+TGG - chr8.2:62956577-62956596 None:intergenic 25.0%
!! AATGTTTACTTTAGAGATGA+GGG + chr8.2:62958077-62958096 MS.gene051172:intron 25.0%
!! AATTCAAATTTTGCCAAGAA+TGG - chr8.2:62959800-62959819 None:intergenic 25.0%
!! AATTTGTCACAAAGATGTTT+TGG + chr8.2:62959489-62959508 MS.gene051172:intron 25.0%
!! ACTAAAAGTGATTTGTGTTT+GGG - chr8.2:62956576-62956595 None:intergenic 25.0%
!! ATGGTTCTTTCAATTTTCAA+TGG + chr8.2:62958013-62958032 MS.gene051172:intron 25.0%
!! ATTCAAATTTTGCCAAGAAT+GGG - chr8.2:62959799-62959818 None:intergenic 25.0%
!! CAAGTAAAATCAATTTTGGA+GGG - chr8.2:62956469-62956488 None:intergenic 25.0%
!! CTTAATACAATTATTTGCTG+TGG + chr8.2:62957682-62957701 MS.gene051172:intron 25.0%
!! GCTTCAAGTAAAATCAATTT+TGG - chr8.2:62956473-62956492 None:intergenic 25.0%
!! GTATTTTGTAGAATTGCTTT+TGG - chr8.2:62956614-62956633 None:intergenic 25.0%
!! TCAAGTAAAATCAATTTTGG+AGG - chr8.2:62956470-62956489 None:intergenic 25.0%
!!! ATTTGTTTTGTTGTACAAGT+AGG + chr8.2:62959747-62959766 MS.gene051172:intron 25.0%
!!! GGTGAGTTTTTTAAATTGTA+AGG + chr8.2:62957594-62957613 MS.gene051172:intron 25.0%
!!! GTTTTTAAAAAAGAGAAGGT+GGG - chr8.2:62959379-62959398 None:intergenic 25.0%
!!! TCTATTTTAAGAGTGAAACT+AGG + chr8.2:62959098-62959117 MS.gene051172:intron 25.0%
!!! TGTTTTTAAAAAAGAGAAGG+TGG - chr8.2:62959380-62959399 None:intergenic 25.0%
!!! TTTCCTATTGAACCATTTTT+GGG + chr8.2:62957624-62957643 MS.gene051172:intron 25.0%
!!! TTTTAATTCATCACCCATTT+TGG - chr8.2:62958724-62958743 None:intergenic 25.0%
AAGGGAAAACACTTACTAAT+TGG + chr8.2:62959564-62959583 MS.gene051172:intron 30.0%
ACAACCTTGTAAAATCATCT+CGG + chr8.2:62959067-62959086 MS.gene051172:intron 30.0%
AGTTAAAGCAGTATCAATGT+GGG - chr8.2:62958783-62958802 None:intergenic 30.0%
ATAAAGGAAAGATGAAGTCA+TGG - chr8.2:62958321-62958340 None:intergenic 30.0%
ATGATCAGTACTAGGAAAAA+GGG + chr8.2:62959687-62959706 MS.gene051172:intron 30.0%
CAGCACAAAAATAAAACACA+TGG - chr8.2:62959280-62959299 None:intergenic 30.0%
CTACAATTTCTAACTGTGTT+TGG + chr8.2:62956358-62956377 MS.gene051172:intron 30.0%
GTACAACAAAACAAATGTCT+TGG - chr8.2:62959743-62959762 None:intergenic 30.0%
GTTTGCTTGCAAATCTTTAT+TGG + chr8.2:62959605-62959624 MS.gene051172:intron 30.0%
TAAAAAAGAGAAAGGTGAGT+TGG - chr8.2:62956156-62956175 None:intergenic 30.0%
TTATAGGAAAGATGAAGTCA+TGG - chr8.2:62958365-62958384 None:intergenic 30.0%
TTTGGGCATATTATTACTGT+TGG + chr8.2:62960006-62960025 MS.gene051172:intron 30.0%
! ACTATATAGTTACTTTGCAG+AGG - chr8.2:62959183-62959202 None:intergenic 30.0%
! ATATTCTAAAAAGGTTGAGG+TGG + chr8.2:62957838-62957857 MS.gene051172:intron 30.0%
! ATGTTTACTTTAGAGATGAG+GGG + chr8.2:62958078-62958097 MS.gene051172:intron 30.0%
! ATTTGTTGAATTGTAGTGAC+AGG + chr8.2:62958116-62958135 MS.gene051172:intron 30.0%
! CAATGTTTACTTTAGAGATG+AGG + chr8.2:62958076-62958095 MS.gene051172:intron 30.0%
! CTAAAAGTGATTTGTGTTTG+GGG - chr8.2:62956575-62956594 None:intergenic 30.0%
! CTATATAGTTACTTTGCAGA+GGG - chr8.2:62959182-62959201 None:intergenic 30.0%
! CTTTCCTATTGAACCATTTT+TGG + chr8.2:62957623-62957642 MS.gene051172:intron 30.0%
! GAGATATTCTAAAAAGGTTG+AGG + chr8.2:62957835-62957854 MS.gene051172:intron 30.0%
! TAAAAGTGATTTGTGTTTGG+GGG - chr8.2:62956574-62956593 None:intergenic 30.0%
! TTCAAATTTTGCCAAGAATG+GGG - chr8.2:62959798-62959817 None:intergenic 30.0%
!! TTCCTATTGAACCATTTTTG+GGG + chr8.2:62957625-62957644 MS.gene051172:intron 30.0%
!! TTTTCAATGGATTCTTGTCT+TGG + chr8.2:62958026-62958045 MS.gene051172:intron 30.0%
!!! AAGCTACAATTTGTTGCTTT+TGG - chr8.2:62956824-62956843 None:intergenic 30.0%
!!! TAGGTCAATATGTCTTGTTT+TGG + chr8.2:62957309-62957328 MS.gene051172:intron 30.0%
AATTCTTGTAGAAGCTGAAC+TGG - chr8.2:62956668-62956687 None:intergenic 35.0%
AGAGTCAAAAGTGATTCTAG+AGG - chr8.2:62956921-62956940 None:intergenic 35.0%
AGTCCCTTTAAGTGCTTATT+AGG - chr8.2:62958677-62958696 None:intergenic 35.0%
CACTTACTAATTGGAACTGA+TGG + chr8.2:62959573-62959592 MS.gene051172:intron 35.0%
CTCAATACACTTGACATGAA+AGG - chr8.2:62958991-62959010 None:intergenic 35.0%
GAAAGTTCAGTCATGCAATA+TGG + chr8.2:62958877-62958896 MS.gene051172:intron 35.0%
GAGTTAAAGCAGTATCAATG+TGG - chr8.2:62958784-62958803 None:intergenic 35.0%
GATGATCAGTACTAGGAAAA+AGG + chr8.2:62959686-62959705 MS.gene051172:intron 35.0%
TACACCTCGAAAATCAATTC+TGG - chr8.2:62956401-62956420 None:intergenic 35.0%
TACCCCAAAAATGGTTCAAT+AGG - chr8.2:62957630-62957649 None:intergenic 35.0%
TATCCTTAAACGTTTGTTCG+CGG + chr8.2:62957793-62957812 MS.gene051172:intron 35.0%
! TAGTGACAGGTACTCTAAAA+GGG + chr8.2:62958129-62958148 MS.gene051172:intron 35.0%
! TGTAGTTTTCAGTGGATCAT+CGG - chr8.2:62959309-62959328 None:intergenic 35.0%
! TTTGCCGAGATGATTTTACA+AGG - chr8.2:62959074-62959093 None:intergenic 35.0%
!! AGAATCACTTTTGACTCTCT+AGG + chr8.2:62956923-62956942 MS.gene051172:intron 35.0%
!! GAAGCTGTTGAGTTTTTAAG+AGG + chr8.2:62958182-62958201 MS.gene051172:CDS 35.0%
!!! AACCATTTTTGGGGTATTCT+TGG + chr8.2:62957634-62957653 MS.gene051172:intron 35.0%
AAAACTCAACAGCTTCATCC+AGG - chr8.2:62958178-62958197 None:intergenic 40.0%
ACATGTGTCTTTGCAGTGTT+TGG + chr8.2:62957031-62957050 MS.gene051172:intron 40.0%
CACCAAGAATACCCCAAAAA+TGG - chr8.2:62957639-62957658 None:intergenic 40.0%
CATTCAGGGCATATGATTGT+TGG + chr8.2:62958443-62958462 MS.gene051172:intron 40.0%
GAACCATAGCATGAACACAA+AGG - chr8.2:62958000-62958019 None:intergenic 40.0%
GTAGTGACAGGTACTCTAAA+AGG + chr8.2:62958128-62958147 MS.gene051172:intron 40.0%
TAAACGTTTGTTCGCGGTTA+TGG + chr8.2:62957799-62957818 MS.gene051172:intron 40.0%
TAACCGCGAACAAACGTTTA+AGG - chr8.2:62957799-62957818 None:intergenic 40.0%
TACAATCAAGCCAAGACTTC+TGG - chr8.2:62959339-62959358 None:intergenic 40.0%
TCTCCTTTGTGTTCATGCTA+TGG + chr8.2:62957994-62958013 MS.gene051172:intron 40.0%
TGGCTTTCGCTATCACAATT+TGG - chr8.2:62958704-62958723 None:intergenic 40.0%
TGTTTGGTATCTGTGTCTGT+CGG + chr8.2:62957047-62957066 MS.gene051172:intron 40.0%
! CTCTATTTGGATTGGGTTCT+AGG + chr8.2:62957718-62957737 MS.gene051172:intron 40.0%
! GTAGTTTTCAGTGGATCATC+GGG - chr8.2:62959308-62959327 None:intergenic 40.0%
! GTCTGATCTGTAGTTTTCAG+TGG - chr8.2:62959317-62959336 None:intergenic 40.0%
! GTGATAGCGAAAGCCAAAAT+GGG + chr8.2:62958708-62958727 MS.gene051172:intron 40.0%
! TCAATGGATTCTTGTCTTGG+AGG + chr8.2:62958029-62958048 MS.gene051172:intron 40.0%
! TGTGATAGCGAAAGCCAAAA+TGG + chr8.2:62958707-62958726 MS.gene051172:intron 40.0%
! TGTTTGGTTCCACTTCTAGA+GGG + chr8.2:62956374-62956393 MS.gene051172:intron 40.0%
!! TCCTAGTACTGATCATCATG+TGG - chr8.2:62959683-62959702 None:intergenic 40.0%
!!! CTAGTTTTACTCCCCATTCT+TGG + chr8.2:62959784-62959803 MS.gene051172:intron 40.0%
!!! TGGATTGGGTTCTAGGTTTT+GGG + chr8.2:62957725-62957744 MS.gene051172:intron 40.0%
!!! TTGGATTGGGTTCTAGGTTT+TGG + chr8.2:62957724-62957743 MS.gene051172:intron 40.0%
AAGCTGAACTGGTTGTGCAT+GGG - chr8.2:62956657-62956676 None:intergenic 45.0%
ACAGATCAGACCAGAAGTCT+TGG + chr8.2:62959326-62959345 MS.gene051172:CDS 45.0%
CCAGGACAAGGTTAAGTAAC+TGG - chr8.2:62958160-62958179 None:intergenic 45.0%
CCAGTTACTTAACCTTGTCC+TGG + chr8.2:62958157-62958176 MS.gene051172:CDS 45.0%
GATTGCAAACCCCTTTCTTG+AGG + chr8.2:62960109-62960128 MS.gene051172:CDS 45.0%
GCATGACTGAACTTTCAAGC+AGG - chr8.2:62958873-62958892 None:intergenic 45.0%
GCCACATGATGATCAGTACT+AGG + chr8.2:62959679-62959698 MS.gene051172:intron 45.0%
GGTGTTCAAGTCAAGCTTAC+TGG + chr8.2:62956111-62956130 MS.gene051172:CDS 45.0%
GTTCAAGTCAAGCTTACTGG+TGG + chr8.2:62956114-62956133 MS.gene051172:CDS 45.0%
TCAGTACTAGGAAAAAGGGC+AGG + chr8.2:62959691-62959710 MS.gene051172:intron 45.0%
TGGGAGGAAAGAAACTGTTC+TGG + chr8.2:62956065-62956084 MS.gene051172:CDS 45.0%
! AATTCTGGACCCTCTAGAAG+TGG - chr8.2:62956386-62956405 None:intergenic 45.0%
! GGGATGACAAAGCAGGTTTT+GGG + chr8.2:62959989-62960008 MS.gene051172:intron 45.0%
! GTGTTTGGTTCCACTTCTAG+AGG + chr8.2:62956373-62956392 MS.gene051172:intron 45.0%
! TGGGATGACAAAGCAGGTTT+TGG + chr8.2:62959988-62960007 MS.gene051172:intron 45.0%
! TTTTGCTGGGATGACAAAGC+AGG + chr8.2:62959982-62960001 MS.gene051172:intron 45.0%
!! AACTGCTTTTGTCGCAATGC+AGG + chr8.2:62960034-62960053 MS.gene051172:intron 45.0%
!! GGGTCCAGAATTGATTTTCG+AGG + chr8.2:62956394-62956413 MS.gene051172:intron 45.0%
!!! GATTGGGTTCTAGGTTTTGG+GGG + chr8.2:62957727-62957746 MS.gene051172:intron 45.0%
!!! GGATTGGGTTCTAGGTTTTG+GGG + chr8.2:62957726-62957745 MS.gene051172:intron 45.0%
!!! ATTTTGAAATTTATAAATTT+TGG + chr8.2:62958283-62958302 MS.gene051172:intron 5.0%
!!! ATTTTTTTAAGAAAATTAAA+AGG - chr8.2:62958495-62958514 None:intergenic 5.0%
!!! TTTTTTAAAAACATAATTTA+TGG + chr8.2:62959387-62959406 MS.gene051172:intron 5.0%
AACCCCTTTCTTGAGGCAGA+TGG + chr8.2:62960116-62960135 MS.gene051172:CDS 50.0%
AAGCTTACTGGTGGCAGACA+AGG + chr8.2:62956123-62956142 MS.gene051172:CDS 50.0%
ACCCCTTTCTTGAGGCAGAT+GGG + chr8.2:62960117-62960136 MS.gene051172:CDS 50.0%
AGCTGAACTGGTTGTGCATG+GGG - chr8.2:62956656-62956675 None:intergenic 50.0%
ATCTCGTCCGTACCATCAGT+TGG - chr8.2:62960092-62960111 None:intergenic 50.0%
ATGCTTGTGTCGCCAACTGA+TGG + chr8.2:62960077-62960096 MS.gene051172:CDS 50.0%
CAACAGCTTCATCCAGGACA+AGG - chr8.2:62958172-62958191 None:intergenic 50.0%
GAAGCTGAACTGGTTGTGCA+TGG - chr8.2:62956658-62956677 None:intergenic 50.0%
TGTGTCGCCAACTGATGGTA+CGG + chr8.2:62960082-62960101 MS.gene051172:CDS 50.0%
! GGGGTATTCTTGGTGAGCAT+TGG + chr8.2:62957644-62957663 MS.gene051172:intron 50.0%
CCCCATCTGCCTCAAGAAAG+GGG - chr8.2:62960121-62960140 None:intergenic 55.0%
CCCCTTTCTTGAGGCAGATG+GGG + chr8.2:62960118-62960137 MS.gene051172:CDS 55.0%
GCCCCATCTGCCTCAAGAAA+GGG - chr8.2:62960122-62960141 None:intergenic 55.0%
CTTGAGGCAGATGGGGCCTA+GGG + chr8.2:62960125-62960144 MS.gene051172:CDS 60.0%
GGCCCCATCTGCCTCAAGAA+AGG - chr8.2:62960123-62960142 None:intergenic 60.0%
TCTTGAGGCAGATGGGGCCT+AGG + chr8.2:62960124-62960143 MS.gene051172:CDS 60.0%
TTGAGGCAGATGGGGCCTAG+GGG + chr8.2:62960126-62960145 MS.gene051172:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 62956063 62960145 62956063 ID=MS.gene051172
chr8.2 mRNA 62956063 62960145 62956063 ID=MS.gene051172.t1;Parent=MS.gene051172
chr8.2 exon 62956063 62956144 62956063 ID=MS.gene051172.t1.exon1;Parent=MS.gene051172.t1
chr8.2 CDS 62956063 62956144 62956063 ID=cds.MS.gene051172.t1;Parent=MS.gene051172.t1
chr8.2 exon 62958132 62958203 62958132 ID=MS.gene051172.t1.exon2;Parent=MS.gene051172.t1
chr8.2 CDS 62958132 62958203 62958132 ID=cds.MS.gene051172.t1;Parent=MS.gene051172.t1
chr8.2 exon 62959303 62959355 62959303 ID=MS.gene051172.t1.exon3;Parent=MS.gene051172.t1
chr8.2 CDS 62959303 62959355 62959303 ID=cds.MS.gene051172.t1;Parent=MS.gene051172.t1
chr8.2 exon 62960056 62960145 62960056 ID=MS.gene051172.t1.exon4;Parent=MS.gene051172.t1
chr8.2 CDS 62960056 62960145 62960056 ID=cds.MS.gene051172.t1;Parent=MS.gene051172.t1
Gene Sequence

>MS.gene051172

TCTGGGAGGAAAGAAACTGTTCTGGATTTAGCAAAATTTGTTGATAAAGGTGTTCAAGTCAAGCTTACTGGTGGCAGACAAGGTATATAACCAACTCACCTTTCTCTTTTTTATTTTATTTTATACGTTTCTTCTTATCATTAAATTGATTCTGGCTTAAAGTAATTTATGTTTGGATACATTCATATAAATAGGGTTGGACAAAAGTCAATTATTGAGACAAAACTTTCAAATTTTAGCCGAGAATTGATTTTGAGTGAATTGATTCTGTAAAATTGATTGTGGAATTTAGAAGCTACAATTTCTAACTGTGTTTGGTTCCACTTCTAGAGGGTCCAGAATTGATTTTCGAGGTGTATAATTGATTCTGACATGTTTGCTTTTATCGAGTAGAATTTATTCTCCCTCCAAAATTGATTTTACTTGAAGCTAGAATTTGTAGTTTTTGATTCTAGATTTGATTTTCTGACACAAATTTATAGTTCAACTTACTTTTACATGAATATATCCCCCAAACACAAATCACTTTTAGTTAGAATTACTTTTAACCAAAAGCAATTCTACAAAATACTTCTATCAAAATCAATTCTCCCCATGCACAACCAGTTCAGCTTCTACAAGAATTGATTTTGAGTGAATTGATTATGTAAAATTGATTCTACATAAAAGTGAGTTGAATGTAAAATGATACATGTTTGGATGTTTTTATATAAAAGTTGATTTAACAATAAATTTAAGGCTAGAATCAATTGTAGTAGCCAAAAGCAACAAATTGTAGCTTCAAGTAGAATCAATTCTACAAGCAAAATCAATTCTACTTTAAATCACCCAAACATCATAAATTCAATTCTACAACCTCTAGAATCACTTTTGACTCTCTAGGATTGAAACCAAACATGTCAAAATCAATTATACATGTGTGGAATCAATATTCCCTCATCCAAACATTTTCATTTTCTTAAATTATTACATGTGTCTTTGCAGTGTTTGGTATCTGTGTCTGTCGGAGTGCTTCTCAGTTTGAGAGTTTGTCAAATGTCATTTTCTCTAGCTTGAGTTTAGTTACCATCTTTTGAATAAAAAAATTTAGAATTTTAATTGCAATTTTGTACTAAGATTTGAAGTTCTTCGAGAAAATATTGTCTGATTTTGAGTTTGTAGTCGTTTTTGTTTGTCGAGATTGAATTATTTGTGTGCACTGCTTTGTGTGTTGATTTGCTTTTAATATTATGGATATTCTTATTTGTAGGTCAATATGTCTTGTTTTGGATTCACTTCTTTAATATTTCATTCTATTCTTCTGAATTTTGTATGCAAATAACATTACATAGTTTATATTTTGTATTAATTTTGTAATTCTGCTAGTCAACTTTTATATGACGACAATGAATGATGAAAATCTAGAATATTAAATTCATACAAAAGTAAATAATTGATAATCCTTGTGTATGTTTTTTTTGTTTTGTTTTAAGGAAAGTCCTTATGTATGTTATTAACTGTGTTATGTGCAGCTTTTTATCTGAAATAATTGGGTGAGTTTTTTAAATTGTAAGGGTGTCACTTTCCTATTGAACCATTTTTGGGGTATTCTTGGTGAGCATTGGTAGTGTGAGTGCGCACTTAATACAATTATTTGCTGTGGGATGAAATAATTGCTCTATTTGGATTGGGTTCTAGGTTTTGGGGGCTTCTCAATTGAGATAAATACTTGTTTCAGAACTTATGGAATATATCCTTAAACGTTTGTTCGCGGTTATGGAGAATTTAAATGAGAGATATTCTAAAAAGGTTGAGGTGGAGAAATTAATTTTAACTTGTTTAAGAAGTTATTTATTTAGAAGTCTCATAGTCATTGCTTGATCATTTCAACTTTTCTTTTCATTGAACTTCTTGTTGAGAAGTATATCCAAACTTACTTTATGTTTATTGCTTCTCCTTTGTGTTCATGCTATGGTTCTTTCAATTTTCAATGGATTCTTGTCTTGGAGGATATCTTGTCTTCTCCATAATCTTCAATGTTTACTTTAGAGATGAGGGGTCTAACATAATTACAATTTGTTGAATTGTAGTGACAGGTACTCTAAAAGGGTATGACCAGTTACTTAACCTTGTCCTGGATGAAGCTGTTGAGTTTTTAAGAGGTAAATACTACATAGTGTACCAGCTCCATGTTTTTTTTTTTTTTTTTGCATTTAGTAACTTGATTAGTCAATTGCATATATTTTGAAATTTATAAATTTTGGATCGCTATAATGCCATGACTTCATCTTTCCTTTATAAATTTTGGATCGCTATGATGCCATGACTTCATCTTTCCTATAACACATTGAAATAAATACAGTTTGTATAGAAAGGGAATAAAGAGAAAGTTCATCTAATTCATTCAGGGCATATGATTGTTGGTGCTTTGTTTTTGAAGAAAAAAAGGGCCTTTTAATTTTCTTAAAAAAATATATCATAATTAGATAAACCTTGTTAAAATATAGAAGGAAAAAAAACAGTTTTAGTTATTATCTCAAAATCTAGAAAAATGATTCTGCACACAAGCTGTCATAAATGTGCTTTTCACCTAAGTTGACATTTTTTTGTTTTTTTTTTCTTCACAATATTACCTAATAAGCACTTAAAGGGACTTTTACCAAATTGTGATAGCGAAAGCCAAAATGGGTGATGAATTAAAAGTAGCACACTTTAACATCACTTCTCAACTGAAATTGCCCACATTGATACTGCTTTAACTCGTTGTTGTTCAAAATGTTTTCTTATTTGTTTTGGCAATATGTAAAATGTCAACATCTATATGATTGCCTGCTTGAAAGTTCAGTCATGCAATATGGACTATAGAGTCATGATGCACCCTTGTGTATATTTAGCTTTAATGAATAATTTACAACAAATATCATACATAGTTTCGTTCATGCTAAGCCTTTCATGTCAAGTGTATTGAGCTCAGTCATTCTGATGTAGTTTGATAGTGTCTGATAAACTGATACATATTTGTCATACAACCTTGTAAAATCATCTCGGCAAAACTGTCTATTTTAAGAGTGAAACTAGGTTTTGTTTGCCTACTCGTACTTATTTTTTCAAAGTAGTGCTTGATAAGAATATTAATGCCCTCTGCAAAGTAACTATATAGTTTCTAAGAAGTAGTGTTGAATAGTTAAATCTTATTAACATAAGAACAGCTTTACATATTCTTTGTAACCAAAATCCATGTGTTTTATTTTTGTGCTGCAGATCCCGATGATCCACTGAAAACTACAGATCAGACCAGAAGTCTTGGCTTGATTGTATGCTTCTTTCATTCTTTCCCACCTTCTCTTTTTTAAAAACATAATTTATGGTCTATTTATTAGAGTACTATAATTGTTTTCTAATTTCATAGTCAATTCCTTATTGATAAAACATTGGAAATGGAAACATAATTTGTCACAAAGATGTTTTGGTTTTCTAATTAATCTAGCTTGTCATGAGTTTAGTCAGATGAATAGATAAGAAAAGGGAAAACACTTACTAATTGGAACTGATGGAAAGTTCTTGTTTGCTTGCAAATCTTTATTGGAAAGTAAAAATGTGAAGATATAAGCTGAATTTGCAGTTTCATAATTTTTTTGCCACATGATGATCAGTACTAGGAAAAAGGGCAGGATTATATTGTTGTCATACTCTAGTTCCCAAGACATTTGTTTTGTTGTACAAGTAGGAGCTGTGAATGTTACTAGTTTTACTCCCCATTCTTGGCAAAATTTGAATTTGATGTAAATTTGAAATTTATATCAAATTTGCAAATGCTTATTTTGAAATTTATATCAAATTTGCAAATGCTTATTAGCACTTAATATCGTTTGTGACTAATTAACAGCATGCATTGAGAAAACATTTCTTGTAAGTTACACAACCAAAACAAATATATGAATTTTGCTGGGATGACAAAGCAGGTTTTGGGCATATTATTACTGTTGGAACTAAACTGCTTTTGTCGCAATGCAGGTTTGCAGGGGAACTGCTGTCATGCTTGTGTCGCCAACTGATGGTACGGACGAGATTGCAAACCCCTTTCTTGAGGCAGATGGGGCCTAG
Protein sequence

>MS.gene051172.t1

SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLIVCRGTAVMLVSPTDGTDEIANPFLEADGA