Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001456.t1 | XP_013456604.1 | 97.9 | 142 | 3 | 0 | 1 | 142 | 1 | 142 | 3.80E-74 | 287.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001456.t1 | Q0DWQ7 | 49.5 | 109 | 53 | 2 | 8 | 115 | 7 | 114 | 8.3e-22 | 104.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001456.t1 | I3RZJ2 | 97.9 | 142 | 3 | 0 | 1 | 142 | 1 | 142 | 2.7e-74 | 287.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052354 | MS.gene001456 | PPI |
| MS.gene006522 | MS.gene001456 | PPI |
| MS.gene006520 | MS.gene001456 | PPI |
| MS.gene74458 | MS.gene001456 | PPI |
| MS.gene006524 | MS.gene001456 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001456.t1 | MTR_4g077240 | 97.887 | 142 | 3 | 0 | 1 | 142 | 1 | 142 | 4.35e-100 | 283 |
| MS.gene001456.t1 | MTR_5g008020 | 61.972 | 142 | 35 | 1 | 1 | 142 | 1 | 123 | 3.34e-56 | 171 |
| MS.gene001456.t1 | MTR_5g008020 | 67.708 | 96 | 31 | 0 | 1 | 96 | 1 | 96 | 1.16e-42 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001456.t1 | AT1G67250 | 67.857 | 140 | 45 | 0 | 3 | 142 | 2 | 141 | 4.64e-69 | 205 |
| MS.gene001456.t1 | AT5G38650 | 67.857 | 140 | 45 | 0 | 3 | 142 | 2 | 141 | 9.14e-67 | 199 |
| MS.gene001456.t1 | AT5G38660 | 67.857 | 140 | 45 | 0 | 3 | 142 | 292 | 431 | 2.81e-63 | 199 |
Find 45 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACAGGCAAATTCTTTCT+AGG | 0.239502 | 4.2:-32423286 | MS.gene001456:intron |
| CTGGGTTTGGAGACTGTTAC+AGG | 0.300396 | 4.2:-32421378 | MS.gene001456:CDS |
| TCCTTCTTCAATGCTGGGTT+TGG | 0.302948 | 4.2:-32421391 | MS.gene001456:CDS |
| AGTTCGCCTTGGTCTATCTA+AGG | 0.328350 | 4.2:-32420065 | MS.gene001456:CDS |
| GGTAATTCCTTCTTCAATGC+TGG | 0.336438 | 4.2:-32421397 | MS.gene001456:CDS |
| CACACCGATGTTCTTCGTTT+CGG | 0.369713 | 4.2:-32423732 | MS.gene001456:CDS |
| AAATGTGTTTATATAATACT+TGG | 0.379976 | 4.2:+32420031 | None:intergenic |
| TGTAGGTTCCAGAGGCCTCC+AGG | 0.394850 | 4.2:-32421420 | MS.gene001456:intron |
| CGGTGTGGACACCTCCGATT+TGG | 0.398903 | 4.2:+32423748 | None:intergenic |
| GTAATTCCTTCTTCAATGCT+GGG | 0.431838 | 4.2:-32421396 | MS.gene001456:CDS |
| GAATTACCCCTGGAGGCCTC+TGG | 0.462918 | 4.2:+32421412 | None:intergenic |
| CAATGCAAAGTGAACTTGTA+TGG | 0.463197 | 4.2:-32423335 | MS.gene001456:CDS |
| AAGACCATTGCACACCAAAT+CGG | 0.493784 | 4.2:-32423762 | MS.gene001456:CDS |
| GTTCTTCGTTTCGGACTCCC+CGG | 0.510103 | 4.2:-32423723 | MS.gene001456:CDS |
| ACAGGAACTCTTGATCACTT+TGG | 0.516207 | 4.2:-32421360 | MS.gene001456:CDS |
| GTAGGTTCCAGAGGCCTCCA+GGG | 0.520667 | 4.2:-32421419 | MS.gene001456:intron |
| TTGTTCCTTGTAGGTTCCAG+AGG | 0.530160 | 4.2:-32421428 | MS.gene001456:intron |
| CACTCAAGGAGGAACTTGAC+AGG | 0.531487 | 4.2:-32423301 | MS.gene001456:CDS |
| TATATAATACTTGGGTACAC+TGG | 0.537892 | 4.2:+32420040 | None:intergenic |
| TCCAAACCCAGCATTGAAGA+AGG | 0.541603 | 4.2:+32421390 | None:intergenic |
| ATTGGACATGCACCACGGAA+TGG | 0.546291 | 4.2:-32420089 | MS.gene001456:CDS |
| CACGGAATGGAAGTTCGCCT+TGG | 0.547717 | 4.2:-32420076 | MS.gene001456:CDS |
| ATTCCGTGGTGCATGTCCAA+TGG | 0.554833 | 4.2:+32420091 | None:intergenic |
| GTGTGGAAGAAGCTATGAAA+AGG | 0.569616 | 4.2:-32423358 | MS.gene001456:CDS |
| CTGTCAAGTTCCTCCTTGAG+TGG | 0.571910 | 4.2:+32423302 | None:intergenic |
| AATGTGTTTATATAATACTT+GGG | 0.572452 | 4.2:+32420032 | None:intergenic |
| AACGATGTCACTCTTGACAC+CGG | 0.575887 | 4.2:+32423704 | None:intergenic |
| ACCTCCGATTTGGTGTGCAA+TGG | 0.590824 | 4.2:+32423758 | None:intergenic |
| ACGATGTCACTCTTGACACC+GGG | 0.595518 | 4.2:+32423705 | None:intergenic |
| GTTCGCCTTGGTCTATCTAA+GGG | 0.596428 | 4.2:-32420064 | MS.gene001456:CDS |
| CGGCCATTGGACATGCACCA+CGG | 0.610558 | 4.2:-32420094 | MS.gene001456:CDS |
| CGAAAAGTCTCTGATTCACG+AGG | 0.611926 | 4.2:+32420115 | None:intergenic |
| ATTGAAGAAGGAATTACCCC+TGG | 0.637004 | 4.2:+32421402 | None:intergenic |
| GGTGTCAAGAGTGACATCGT+TGG | 0.652058 | 4.2:-32423702 | MS.gene001456:CDS |
| ATTGGAGAGATGATTCGAGA+GGG | 0.655080 | 4.2:+32423673 | None:intergenic |
| CAAGGCGAACTTCCATTCCG+TGG | 0.661589 | 4.2:+32420077 | None:intergenic |
| TAGGTTCCAGAGGCCTCCAG+GGG | 0.666008 | 4.2:-32421418 | MS.gene001456:CDS |
| ACCATTGCACACCAAATCGG+AGG | 0.670349 | 4.2:-32423759 | MS.gene001456:CDS |
| GATTGGAGAGATGATTCGAG+AGG | 0.680344 | 4.2:+32423672 | None:intergenic |
| GAGTCCGAAACGAAGAACAT+CGG | 0.687032 | 4.2:+32423728 | None:intergenic |
| CTGGTCCCTTAGATAGACCA+AGG | 0.705296 | 4.2:+32420059 | None:intergenic |
| GAAGAAGGAATTACCCCTGG+AGG | 0.721691 | 4.2:+32421405 | None:intergenic |
| GAAAAGTCTCTGATTCACGA+GGG | 0.726373 | 4.2:+32420116 | None:intergenic |
| CGAAACGAAGAACATCGGTG+TGG | 0.742333 | 4.2:+32423733 | None:intergenic |
| CGATGTCACTCTTGACACCG+GGG | 0.751960 | 4.2:+32423706 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAAAAAATTATGATT+TGG | + | chr4.2:32423518-32423537 | None:intergenic | 10.0% |
| !! | AAACTAAAAAATTATGATTT+GGG | + | chr4.2:32423517-32423536 | None:intergenic | 10.0% |
| !! | AATGAAAATGAAATATTATT+AGG | - | chr4.2:32422732-32422751 | MS.gene001456:intron | 10.0% |
| !! | AATTTAGGAAAAAAAAAATA+GGG | - | chr4.2:32420293-32420312 | MS.gene001456:intron | 10.0% |
| !! | ATGAAAATGAAATATTATTA+GGG | - | chr4.2:32422733-32422752 | MS.gene001456:intron | 10.0% |
| !!! | TTGTTTTTTATTTTAAAGTT+TGG | - | chr4.2:32420380-32420399 | MS.gene001456:intron | 10.0% |
| !!! | TTTAATTTATCTATTTTTCA+AGG | - | chr4.2:32420568-32420587 | MS.gene001456:intron | 10.0% |
| !! | AAAATTTGTATTGTAGAAAT+TGG | - | chr4.2:32420984-32421003 | MS.gene001456:intron | 15.0% |
| !! | AAATTTGTATTGTAGAAATT+GGG | - | chr4.2:32420985-32421004 | MS.gene001456:intron | 15.0% |
| !! | AATCTTAATAATGATACAAA+TGG | + | chr4.2:32423230-32423249 | None:intergenic | 15.0% |
| !! | AATGAAGCATAATTATAATA+TGG | + | chr4.2:32422871-32422890 | None:intergenic | 15.0% |
| !! | ACCTTATATATAGATTATAT+AGG | - | chr4.2:32423040-32423059 | MS.gene001456:intron | 15.0% |
| !! | GAATTTAGGAAAAAAAAAAT+AGG | - | chr4.2:32420292-32420311 | MS.gene001456:intron | 15.0% |
| !! | TCAAATATAAAAGAAAGAAA+TGG | - | chr4.2:32421573-32421592 | MS.gene001456:intron | 15.0% |
| !! | TCCTATATAATCTATATATA+AGG | + | chr4.2:32423044-32423063 | None:intergenic | 15.0% |
| !! | TTATATATAGATTATATAGG+AGG | - | chr4.2:32423043-32423062 | MS.gene001456:intron | 15.0% |
| !!! | AATTTTTTAGTTTTAGCTAT+TGG | - | chr4.2:32423524-32423543 | MS.gene001456:intron | 15.0% |
| !!! | ATTTTAATTTTTTGTCACTA+TGG | - | chr4.2:32422550-32422569 | MS.gene001456:intron | 15.0% |
| !!! | CTAAGAGTATTTTTTTTTTT+TGG | - | chr4.2:32421807-32421826 | MS.gene001456:intron | 15.0% |
| !!! | TTTTTTTTTTTGGAAAGAAT+AGG | - | chr4.2:32421817-32421836 | MS.gene001456:intron | 15.0% |
| !! | AAAAAAAAAATACTCTTAGC+AGG | + | chr4.2:32421806-32421825 | None:intergenic | 20.0% |
| !! | AAAAAAAAATACTCTTAGCA+GGG | + | chr4.2:32421805-32421824 | None:intergenic | 20.0% |
| !! | AATTTATTACTACATGCATT+GGG | + | chr4.2:32421652-32421671 | None:intergenic | 20.0% |
| !! | AATTTGTATTGTAGAAATTG+GGG | - | chr4.2:32420986-32421005 | MS.gene001456:intron | 20.0% |
| !! | CACTATTAAAAAGATAAACT+CGG | - | chr4.2:32421261-32421280 | MS.gene001456:intron | 20.0% |
| !! | CCAAAAAACAAAATAATGAA+AGG | + | chr4.2:32422515-32422534 | None:intergenic | 20.0% |
| !! | GTTATATGATCTAATTGAAT+AGG | - | chr4.2:32420353-32420372 | MS.gene001456:intron | 20.0% |
| !! | TGAAAAAACAACAATTAGAT+CGG | + | chr4.2:32420231-32420250 | None:intergenic | 20.0% |
| !! | TTACTCTGTTATTAACATAT+GGG | + | chr4.2:32421983-32422002 | None:intergenic | 20.0% |
| !!! | AGTATCTGAAATTAACATAT+GGG | + | chr4.2:32421895-32421914 | None:intergenic | 20.0% |
| !!! | ATATAAGGTTGAATGTTTTA+AGG | + | chr4.2:32423029-32423048 | None:intergenic | 20.0% |
| !!! | CCTTTCATTATTTTGTTTTT+TGG | - | chr4.2:32422512-32422531 | MS.gene001456:intron | 20.0% |
| !!! | TAGTATCTGAAATTAACATA+TGG | + | chr4.2:32421896-32421915 | None:intergenic | 20.0% |
| !!! | TGTATGTTGCTTATTATTTT+TGG | - | chr4.2:32423599-32423618 | MS.gene001456:intron | 20.0% |
| ! | AACTCTTACTCTATTAATAG+TGG | - | chr4.2:32422904-32422923 | MS.gene001456:intron | 25.0% |
| ! | ACAAATAAATTAACGTGCTA+TGG | - | chr4.2:32421673-32421692 | MS.gene001456:intron | 25.0% |
| ! | ACAATCATCTCAAAACAAAA+AGG | + | chr4.2:32423099-32423118 | None:intergenic | 25.0% |
| ! | ACTAGTTAAGGAAACAAAAA+AGG | - | chr4.2:32422767-32422786 | MS.gene001456:intron | 25.0% |
| ! | AGCAAATCTTATGTTTAAAG+AGG | - | chr4.2:32421760-32421779 | MS.gene001456:intron | 25.0% |
| ! | ATAATAAAGTTGAACCAAAC+AGG | + | chr4.2:32422970-32422989 | None:intergenic | 25.0% |
| ! | ATTTGTATTGTAGAAATTGG+GGG | - | chr4.2:32420987-32421006 | MS.gene001456:intron | 25.0% |
| ! | CAATTTATTACTACATGCAT+TGG | + | chr4.2:32421653-32421672 | None:intergenic | 25.0% |
| ! | CTTACTCTGTTATTAACATA+TGG | + | chr4.2:32421984-32422003 | None:intergenic | 25.0% |
| ! | GAAAAAACAACAATTAGATC+GGG | + | chr4.2:32420230-32420249 | None:intergenic | 25.0% |
| ! | GTATCATTATTAAGATTCCA+AGG | - | chr4.2:32423233-32423252 | MS.gene001456:intron | 25.0% |
| ! | TATTATGCATAACTAAGCTT+TGG | - | chr4.2:32422984-32423003 | MS.gene001456:intron | 25.0% |
| ! | TTGAAAGGAAAATACTTTCT+GGG | - | chr4.2:32420831-32420850 | MS.gene001456:intron | 25.0% |
| !! | TAAAAAATTATGATTTGGGC+AGG | + | chr4.2:32423513-32423532 | None:intergenic | 25.0% |
| !! | TCATTCACAGTTCATATTTT+GGG | - | chr4.2:32422132-32422151 | MS.gene001456:intron | 25.0% |
| !! | TTCATTCACAGTTCATATTT+TGG | - | chr4.2:32422131-32422150 | MS.gene001456:intron | 25.0% |
| !!! | AGCTTTATTGTGATTATGAT+GGG | - | chr4.2:32423187-32423206 | MS.gene001456:intron | 25.0% |
| !!! | ATGTGTGTTTGTTTTCATTT+GGG | - | chr4.2:32420416-32420435 | MS.gene001456:intron | 25.0% |
| !!! | CAGGCTATATATAACTTTTT+TGG | + | chr4.2:32423494-32423513 | None:intergenic | 25.0% |
| !!! | CTATTGATCTTTGAAACATT+CGG | - | chr4.2:32422621-32422640 | MS.gene001456:intron | 25.0% |
| !!! | GGTTTTGAAGATTTTCTAAA+TGG | - | chr4.2:32422477-32422496 | MS.gene001456:intron | 25.0% |
| !!! | TATGTGTGTTTGTTTTCATT+TGG | - | chr4.2:32420415-32420434 | MS.gene001456:intron | 25.0% |
| !!! | TTTAGTTTTAGCTATTGGAT+TGG | - | chr4.2:32423529-32423548 | MS.gene001456:intron | 25.0% |
| AAACACGGAAAGATTAAAAC+AGG | + | chr4.2:32420200-32420219 | None:intergenic | 30.0% | |
| AAACTGAAACAGAAAGAAAG+AGG | + | chr4.2:32420177-32420196 | None:intergenic | 30.0% | |
| AACATTAACAACGTTGAGAA+AGG | + | chr4.2:32423671-32423690 | None:intergenic | 30.0% | |
| AACTACAATCTGATAGATAC+CGG | + | chr4.2:32423147-32423166 | None:intergenic | 30.0% | |
| AACTGAAACAGAAAGAAAGA+GGG | + | chr4.2:32420176-32420195 | None:intergenic | 30.0% | |
| AATGAAATTTCTACTAGGAG+TGG | + | chr4.2:32422117-32422136 | None:intergenic | 30.0% | |
| ACTCACTACTAATACAAACA+AGG | + | chr4.2:32420630-32420649 | None:intergenic | 30.0% | |
| AGTGAGTGTTTGAATTTGTA+TGG | - | chr4.2:32420643-32420662 | MS.gene001456:intron | 30.0% | |
| AGTGTTTGAATTTGTATGGT+AGG | - | chr4.2:32420647-32420666 | MS.gene001456:intron | 30.0% | |
| ATATGTTAATTTCAGTCACC+GGG | - | chr4.2:32422067-32422086 | MS.gene001456:intron | 30.0% | |
| ATATTACCATTGTTCCTTGT+AGG | - | chr4.2:32422379-32422398 | MS.gene001456:intron | 30.0% | |
| CATATGTTAATTTCAGTCAC+CGG | - | chr4.2:32422066-32422085 | MS.gene001456:intron | 30.0% | |
| CCATATCCATATGAAAGAAT+AGG | + | chr4.2:32421933-32421952 | None:intergenic | 30.0% | |
| CCTATTCTTTCATATGGATA+TGG | - | chr4.2:32421930-32421949 | MS.gene001456:intron | 30.0% | |
| CGAACACATTTCTTCATAAT+CGG | + | chr4.2:32421380-32421399 | None:intergenic | 30.0% | |
| CGCAATCTTTAACTATATCA+TGG | + | chr4.2:32423575-32423594 | None:intergenic | 30.0% | |
| CTGTGAATGAAATTTCTACT+AGG | + | chr4.2:32422122-32422141 | None:intergenic | 30.0% | |
| CTTGAAAGGAAAATACTTTC+TGG | - | chr4.2:32420830-32420849 | MS.gene001456:intron | 30.0% | |
| GACTGAAATTAACATATGGA+TGG | + | chr4.2:32422064-32422083 | None:intergenic | 30.0% | |
| GCTTAAAATATTAACGCTAG+TGG | + | chr4.2:32423449-32423468 | None:intergenic | 30.0% | |
| TACAAATGGAACATAATTGC+AGG | + | chr4.2:32423216-32423235 | None:intergenic | 30.0% | |
| TACAAGGAACAATGGTAATA+TGG | + | chr4.2:32422380-32422399 | None:intergenic | 30.0% | |
| TATATAATACTTGGGTACAC+TGG | + | chr4.2:32423779-32423798 | None:intergenic | 30.0% | |
| TCAGATCCTATTCTTTCATA+TGG | - | chr4.2:32421924-32421943 | MS.gene001456:intron | 30.0% | |
| TCTCAAAACAAAAAGGAACT+TGG | + | chr4.2:32423092-32423111 | None:intergenic | 30.0% | |
| TGAATGTGAGTTAACTAACT+TGG | - | chr4.2:32420777-32420796 | MS.gene001456:intron | 30.0% | |
| ! | ACACTTTAAATTGATAACCG+TGG | - | chr4.2:32423266-32423285 | MS.gene001456:intron | 30.0% |
| ! | ATATAGGAGGAAGATGTTTT+TGG | - | chr4.2:32423056-32423075 | MS.gene001456:intron | 30.0% |
| ! | CTCTCTACTTGTTAAAAACA+AGG | + | chr4.2:32420960-32420979 | None:intergenic | 30.0% |
| ! | GCTTTATTGTGATTATGATG+GGG | - | chr4.2:32423188-32423207 | MS.gene001456:intron | 30.0% |
| ! | GTTAGAATTGTTTTCCTGTT+TGG | - | chr4.2:32422953-32422972 | MS.gene001456:intron | 30.0% |
| ! | TACTGTTCTTGTTTCCTTAA+GGG | - | chr4.2:32422829-32422848 | MS.gene001456:intron | 30.0% |
| ! | TCTTATGTTTAAAGAGGCAT+CGG | - | chr4.2:32421766-32421785 | MS.gene001456:intron | 30.0% |
| ! | TTACTGTTCTTGTTTCCTTA+AGG | - | chr4.2:32422828-32422847 | MS.gene001456:intron | 30.0% |
| ! | TTTTCCTAAATTCAAAACCC+TGG | + | chr4.2:32420285-32420304 | None:intergenic | 30.0% |
| !! | ACAGTTCATATTTTGGGTAA+TGG | - | chr4.2:32422138-32422157 | MS.gene001456:intron | 30.0% |
| !! | AGATTCATATGGATTTTGAC+CGG | + | chr4.2:32422017-32422036 | None:intergenic | 30.0% |
| !! | CAGTTCATATTTTGGGTAAT+GGG | - | chr4.2:32422139-32422158 | MS.gene001456:intron | 30.0% |
| !! | CTAGCGTTAATATTTTAAGC+AGG | - | chr4.2:32423449-32423468 | MS.gene001456:intron | 30.0% |
| !! | GAGCTTTATTGTGATTATGA+TGG | - | chr4.2:32423186-32423205 | MS.gene001456:intron | 30.0% |
| !!! | GCTTATTATTTTTGGCTCAT+TGG | - | chr4.2:32423607-32423626 | MS.gene001456:intron | 30.0% |
| !!! | TTCATTTGGGTGTTGTTTTT+AGG | - | chr4.2:32420429-32420448 | MS.gene001456:intron | 30.0% |
| AACCCCAATTATATCAAGCA+GGG | + | chr4.2:32422931-32422950 | None:intergenic | 35.0% | |
| AAGAAAGAGGGATTACAGAT+TGG | + | chr4.2:32420164-32420183 | None:intergenic | 35.0% | |
| AATGTTAACTAGTGCCCTTA+AGG | + | chr4.2:32422846-32422865 | None:intergenic | 35.0% | |
| AGATATCTCAACTGTGGTTA+TGG | + | chr4.2:32421053-32421072 | None:intergenic | 35.0% | |
| AGATCGGGTAAAGATAAACA+CGG | + | chr4.2:32420215-32420234 | None:intergenic | 35.0% | |
| AGCTCATATATTGGGGAAAT+AGG | - | chr4.2:32420682-32420701 | MS.gene001456:intron | 35.0% | |
| AGGCAAATTCTTTCTAGGTA+CGG | - | chr4.2:32420535-32420554 | MS.gene001456:intron | 35.0% | |
| ATATGGGAAACCATATCCAA+CGG | + | chr4.2:32421879-32421898 | None:intergenic | 35.0% | |
| CAATGCAAAGTGAACTTGTA+TGG | - | chr4.2:32420481-32420500 | MS.gene001456:intron | 35.0% | |
| CGGTGACTGAAATTAACATA+TGG | + | chr4.2:32422068-32422087 | None:intergenic | 35.0% | |
| CTCTCAAGTCAAAGTTTACA+TGG | + | chr4.2:32421302-32421321 | None:intergenic | 35.0% | |
| GAATGCAAGCTAAATCATGT+TGG | - | chr4.2:32422182-32422201 | MS.gene001456:intron | 35.0% | |
| GCAAATCATCAAATCACATG+AGG | + | chr4.2:32422281-32422300 | None:intergenic | 35.0% | |
| GTAATTCCTTCTTCAATGCT+GGG | - | chr4.2:32422420-32422439 | MS.gene001456:intron | 35.0% | |
| GTGAGTTAACTAACTTGGTA+TGG | - | chr4.2:32420782-32420801 | MS.gene001456:intron | 35.0% | |
| GTTGGGTACTAAGATTCATA+TGG | + | chr4.2:32422028-32422047 | None:intergenic | 35.0% | |
| TAACCCCAATTATATCAAGC+AGG | + | chr4.2:32422932-32422951 | None:intergenic | 35.0% | |
| TACTGAATGAGGAACTTGAA+AGG | - | chr4.2:32420816-32420835 | MS.gene001456:intron | 35.0% | |
| TCAATCGCAGCTCATATATT+GGG | - | chr4.2:32420674-32420693 | MS.gene001456:intron | 35.0% | |
| TCATTCAGCAAAAGAAGCAA+CGG | + | chr4.2:32422717-32422736 | None:intergenic | 35.0% | |
| TTCAATCGCAGCTCATATAT+TGG | - | chr4.2:32420673-32420692 | MS.gene001456:intron | 35.0% | |
| TTGACAGGCAAATTCTTTCT+AGG | - | chr4.2:32420530-32420549 | MS.gene001456:intron | 35.0% | |
| TTTATTGCTAAGAGAGAGAG+TGG | - | chr4.2:32422336-32422355 | MS.gene001456:intron | 35.0% | |
| ! | AAAGTGTCATGTAAAGTCCT+TGG | + | chr4.2:32423253-32423272 | None:intergenic | 35.0% |
| ! | CACTGTGAAATCTGAGATAT+AGG | + | chr4.2:32421172-32421191 | None:intergenic | 35.0% |
| ! | TTTGAGACTCACAAATTGAC+AGG | + | chr4.2:32421741-32421760 | None:intergenic | 35.0% |
| ! | TTTTGATGTTAGCGATTCCA+GGG | - | chr4.2:32420265-32420284 | MS.gene001456:intron | 35.0% |
| !! | ATTTTGATGTTAGCGATTCC+AGG | - | chr4.2:32420264-32420283 | MS.gene001456:intron | 35.0% |
| !! | CCAAATCAAAGAGCTTTAGA+AGG | - | chr4.2:32421464-32421483 | MS.gene001456:intron | 35.0% |
| !! | CCTTCTAAAGCTCTTTGATT+TGG | + | chr4.2:32421467-32421486 | None:intergenic | 35.0% |
| !! | TATGTTAGACTCTGAAACCA+CGG | + | chr4.2:32423286-32423305 | None:intergenic | 35.0% |
| !! | TTTCAAGTTCCTCATTCAGT+AGG | + | chr4.2:32420817-32420836 | None:intergenic | 35.0% |
| !!! | ATTTTGGGTAATGGGAACAT+AGG | - | chr4.2:32422147-32422166 | MS.gene001456:intron | 35.0% |
| !!! | GATTCCAGGGTTTTGAATTT+AGG | - | chr4.2:32420278-32420297 | MS.gene001456:intron | 35.0% |
| !!! | TGGGTGTTGTTTTTAGGTAA+GGG | - | chr4.2:32420435-32420454 | MS.gene001456:intron | 35.0% |
| !!! | TTGGGTGTTGTTTTTAGGTA+AGG | - | chr4.2:32420434-32420453 | MS.gene001456:intron | 35.0% |
| AAACAGCATATGACCAAACC+CGG | + | chr4.2:32422088-32422107 | None:intergenic | 40.0% | |
| AACATATGGATGGTCTCTTG+TGG | + | chr4.2:32422054-32422073 | None:intergenic | 40.0% | |
| AAGACCATTGCACACCAAAT+CGG | - | chr4.2:32420054-32420073 | MS.gene001456:CDS | 40.0% | |
| ACAGGAACTCTTGATCACTT+TGG | - | chr4.2:32422456-32422475 | MS.gene001456:intron | 40.0% | |
| ACATATGGATGGTCTCTTGT+GGG | + | chr4.2:32422053-32422072 | None:intergenic | 40.0% | |
| ACTTTCTGGGTACGAGTATT+TGG | - | chr4.2:32420844-32420863 | MS.gene001456:intron | 40.0% | |
| ATCTCAACTGTGGTTATGGA+AGG | + | chr4.2:32421049-32421068 | None:intergenic | 40.0% | |
| ATTGAAGAAGGAATTACCCC+TGG | + | chr4.2:32422417-32422436 | None:intergenic | 40.0% | |
| ATTGGAGAGATGATTCGAGA+GGG | + | chr4.2:32420146-32420165 | None:intergenic | 40.0% | |
| ATTGTGTCAGACTTCAGATC+AGG | - | chr4.2:32423114-32423133 | MS.gene001456:intron | 40.0% | |
| CAATCGCAGCTCATATATTG+GGG | - | chr4.2:32420675-32420694 | MS.gene001456:intron | 40.0% | |
| GAAAAGTCTCTGATTCACGA+GGG | + | chr4.2:32423703-32423722 | None:intergenic | 40.0% | |
| GGATGTAGATATCTCAACTG+TGG | + | chr4.2:32421059-32421078 | None:intergenic | 40.0% | |
| GGCAAATTCTTTCTAGGTAC+GGG | - | chr4.2:32420536-32420555 | MS.gene001456:intron | 40.0% | |
| GGTAATTCCTTCTTCAATGC+TGG | - | chr4.2:32422419-32422438 | MS.gene001456:intron | 40.0% | |
| GGTCCCTGCTTGATATAATT+GGG | - | chr4.2:32422925-32422944 | MS.gene001456:intron | 40.0% | |
| GTCATGCAAGACACTAGTTA+AGG | - | chr4.2:32422755-32422774 | MS.gene001456:intron | 40.0% | |
| GTCCCTGCTTGATATAATTG+GGG | - | chr4.2:32422926-32422945 | MS.gene001456:intron | 40.0% | |
| GTGTGGAAGAAGCTATGAAA+AGG | - | chr4.2:32420458-32420477 | MS.gene001456:intron | 40.0% | |
| GTTAACTAACAGCGCAATGT+TGG | - | chr4.2:32422244-32422263 | MS.gene001456:intron | 40.0% | |
| TGGGGAAATAGGACAAACAA+TGG | - | chr4.2:32420693-32420712 | MS.gene001456:intron | 40.0% | |
| TGGTCCCTGCTTGATATAAT+TGG | - | chr4.2:32422924-32422943 | MS.gene001456:intron | 40.0% | |
| TGTATTGTAGAAATTGGGGG+TGG | - | chr4.2:32420990-32421009 | MS.gene001456:intron | 40.0% | |
| TTAATTTCAGTCACCGGGTT+TGG | - | chr4.2:32422072-32422091 | MS.gene001456:intron | 40.0% | |
| ! | CTCGTGAATCAGAGACTTTT+CGG | - | chr4.2:32423702-32423721 | MS.gene001456:CDS | 40.0% |
| !! | AGCTGTTTTCCTACTGAATG+AGG | - | chr4.2:32420805-32420824 | MS.gene001456:intron | 40.0% |
| !! | ATGTGGCACTTTGTTGTTGT+TGG | - | chr4.2:32423631-32423650 | MS.gene001456:intron | 40.0% |
| !! | ATTGGTTCTGTCGTGAACTA+GGG | - | chr4.2:32423547-32423566 | MS.gene001456:intron | 40.0% |
| !! | CTTCAGATCAGGTATTGAAC+CGG | - | chr4.2:32423125-32423144 | MS.gene001456:intron | 40.0% |
| !!! | ATTTTTGGCTCATTGGCATG+TGG | - | chr4.2:32423614-32423633 | MS.gene001456:intron | 40.0% |
| !!! | GGGTGTTGTTTTTAGGTAAG+GGG | - | chr4.2:32420436-32420455 | MS.gene001456:intron | 40.0% |
| !!! | TTGTTTTTAGGTAAGGGGTG+TGG | - | chr4.2:32420441-32420460 | MS.gene001456:intron | 40.0% |
| AACGATGTCACTCTTGACAC+CGG | + | chr4.2:32420115-32420134 | None:intergenic | 45.0% | |
| AAGCAGTCGAGATGATTGTG+TGG | - | chr4.2:32421488-32421507 | MS.gene001456:intron | 45.0% | |
| AGAAATTGGGGGTGGATGAT+CGG | - | chr4.2:32420998-32421017 | MS.gene001456:intron | 45.0% | |
| AGTTCGCCTTGGTCTATCTA+AGG | - | chr4.2:32423751-32423770 | MS.gene001456:CDS | 45.0% | |
| CAATCCACATTCCAAACGGA+CGG | + | chr4.2:32421086-32421105 | None:intergenic | 45.0% | |
| CACACCGATGTTCTTCGTTT+CGG | - | chr4.2:32420084-32420103 | MS.gene001456:CDS | 45.0% | |
| CGAAAAGTCTCTGATTCACG+AGG | + | chr4.2:32423704-32423723 | None:intergenic | 45.0% | |
| CGACCAATCCACATTCCAAA+CGG | + | chr4.2:32421090-32421109 | None:intergenic | 45.0% | |
| CTGGAACCTACAAGGAACAA+TGG | + | chr4.2:32422388-32422407 | None:intergenic | 45.0% | |
| GAGTCCGAAACGAAGAACAT+CGG | + | chr4.2:32420091-32420110 | None:intergenic | 45.0% | |
| GATTGGAGAGATGATTCGAG+AGG | + | chr4.2:32420147-32420166 | None:intergenic | 45.0% | |
| GTGTTCGAATCACCATGCTT+AGG | - | chr4.2:32421393-32421412 | MS.gene001456:CDS | 45.0% | |
| GTTCGCCTTGGTCTATCTAA+GGG | - | chr4.2:32423752-32423771 | MS.gene001456:CDS | 45.0% | |
| TCCTTCTTCAATGCTGGGTT+TGG | - | chr4.2:32422425-32422444 | MS.gene001456:intron | 45.0% | |
| TGACTCAAGCTCAAGAGTAG+AGG | + | chr4.2:32421556-32421575 | None:intergenic | 45.0% | |
| TGCAATATGCCACCTAAGCA+TGG | + | chr4.2:32421408-32421427 | None:intergenic | 45.0% | |
| TTCGAATCACCATGCTTAGG+TGG | - | chr4.2:32421396-32421415 | MS.gene001456:CDS | 45.0% | |
| TTGTTCCTTGTAGGTTCCAG+AGG | - | chr4.2:32422388-32422407 | MS.gene001456:intron | 45.0% | |
| ! | ATCAGAGACTTTTCGGCCAT+TGG | - | chr4.2:32423709-32423728 | MS.gene001456:CDS | 45.0% |
| ! | ATGGTCTCTTGTGGGTTGTT+GGG | + | chr4.2:32422045-32422064 | None:intergenic | 45.0% |
| ! | TCCAAACCCAGCATTGAAGA+AGG | + | chr4.2:32422429-32422448 | None:intergenic | 45.0% |
| !! | CGTTTGGAATGTGGATTGGT+CGG | - | chr4.2:32421088-32421107 | MS.gene001456:intron | 45.0% |
| !! | GATTGGTTCTGTCGTGAACT+AGG | - | chr4.2:32423546-32423565 | MS.gene001456:intron | 45.0% |
| !! | GTTTGGAATGTGGATTGGTC+GGG | - | chr4.2:32421089-32421108 | MS.gene001456:intron | 45.0% |
| ACATTCCAAACGGACGGTGA+TGG | + | chr4.2:32421080-32421099 | None:intergenic | 50.0% | |
| ACCATTGCACACCAAATCGG+AGG | - | chr4.2:32420057-32420076 | MS.gene001456:CDS | 50.0% | |
| ACGATGTCACTCTTGACACC+GGG | + | chr4.2:32420114-32420133 | None:intergenic | 50.0% | |
| ACTAACAGCGCAATGTTGGC+TGG | - | chr4.2:32422248-32422267 | MS.gene001456:intron | 50.0% | |
| ATTCCGTGGTGCATGTCCAA+TGG | + | chr4.2:32423728-32423747 | None:intergenic | 50.0% | |
| ATTGGACATGCACCACGGAA+TGG | - | chr4.2:32423727-32423746 | MS.gene001456:CDS | 50.0% | |
| CACTCAAGGAGGAACTTGAC+AGG | - | chr4.2:32420515-32420534 | MS.gene001456:intron | 50.0% | |
| CAGAGTAAGAATAGCAGCGC+CGG | - | chr4.2:32421995-32422014 | MS.gene001456:intron | 50.0% | |
| CGAAACGAAGAACATCGGTG+TGG | + | chr4.2:32420086-32420105 | None:intergenic | 50.0% | |
| CTGGGTTTGGAGACTGTTAC+AGG | - | chr4.2:32422438-32422457 | MS.gene001456:intron | 50.0% | |
| CTGGTCCCTTAGATAGACCA+AGG | + | chr4.2:32423760-32423779 | None:intergenic | 50.0% | |
| CTGTCAAGTTCCTCCTTGAG+TGG | + | chr4.2:32420517-32420536 | None:intergenic | 50.0% | |
| GAAGAAGGAATTACCCCTGG+AGG | + | chr4.2:32422414-32422433 | None:intergenic | 50.0% | |
| GGTGTCAAGAGTGACATCGT+TGG | - | chr4.2:32420114-32420133 | MS.gene001456:CDS | 50.0% | |
| TACATCCATCACCGTCCGTT+TGG | - | chr4.2:32421072-32421091 | MS.gene001456:intron | 50.0% | |
| TCGAGATGATTGTGTGGCAG+TGG | - | chr4.2:32421494-32421513 | MS.gene001456:intron | 50.0% | |
| TGGATATGGTTGTCGCGCAT+CGG | - | chr4.2:32421944-32421963 | MS.gene001456:intron | 50.0% | |
| TGTGGCAGTGGCAAGTATTC+TGG | - | chr4.2:32421506-32421525 | MS.gene001456:intron | 50.0% | |
| ! | ATCACCGTCCGTTTGGAATG+TGG | - | chr4.2:32421079-32421098 | MS.gene001456:intron | 50.0% |
| ! | CGTCCGTTTGGAATGTGGAT+TGG | - | chr4.2:32421084-32421103 | MS.gene001456:intron | 50.0% |
| ! | GATGGTCTCTTGTGGGTTGT+TGG | + | chr4.2:32422046-32422065 | None:intergenic | 50.0% |
| !! | ACCTCCGATTTGGTGTGCAA+TGG | + | chr4.2:32420061-32420080 | None:intergenic | 50.0% |
| !! | TGTCGCGCATCGGTTGAATA+TGG | - | chr4.2:32421954-32421973 | MS.gene001456:intron | 50.0% |
| !!! | AGCTGCTTTTCCACTCAAGG+AGG | - | chr4.2:32420504-32420523 | MS.gene001456:intron | 50.0% |
| !!! | TGGAGCTGCTTTTCCACTCA+AGG | - | chr4.2:32420501-32420520 | MS.gene001456:intron | 50.0% |
| AGCAGCGCATCCGTTGGATA+TGG | - | chr4.2:32421866-32421885 | MS.gene001456:intron | 55.0% | |
| ATTGGGGGTGGATGATCGGT+TGG | - | chr4.2:32421002-32421021 | MS.gene001456:intron | 55.0% | |
| CAACGGATGCGCTGCTATTC+TGG | + | chr4.2:32421862-32421881 | None:intergenic | 55.0% | |
| CAAGGCGAACTTCCATTCCG+TGG | + | chr4.2:32423742-32423761 | None:intergenic | 55.0% | |
| CACGGAATGGAAGTTCGCCT+TGG | - | chr4.2:32423740-32423759 | MS.gene001456:CDS | 55.0% | |
| CAGAATAGCAGCGCATCCGT+TGG | - | chr4.2:32421860-32421879 | MS.gene001456:intron | 55.0% | |
| CGATGTCACTCTTGACACCG+GGG | + | chr4.2:32420113-32420132 | None:intergenic | 55.0% | |
| GTTCTTCGTTTCGGACTCCC+CGG | - | chr4.2:32420093-32420112 | MS.gene001456:CDS | 55.0% | |
| !! | AATGTGGATTGGTCGGGTCG+TGG | - | chr4.2:32421095-32421114 | MS.gene001456:intron | 55.0% |
| !! | CGTGGATTGGTTGGGCTTTC+AGG | - | chr4.2:32421113-32421132 | MS.gene001456:intron | 55.0% |
| CGGCCATTGGACATGCACCA+CGG | - | chr4.2:32423722-32423741 | MS.gene001456:CDS | 60.0% | |
| CGGTGTGGACACCTCCGATT+TGG | + | chr4.2:32420071-32420090 | None:intergenic | 60.0% | |
| GAATTACCCCTGGAGGCCTC+TGG | + | chr4.2:32422407-32422426 | None:intergenic | 60.0% | |
| GTAGGTTCCAGAGGCCTCCA+GGG | - | chr4.2:32422397-32422416 | MS.gene001456:intron | 60.0% | |
| TAGGTTCCAGAGGCCTCCAG+GGG | - | chr4.2:32422398-32422417 | MS.gene001456:intron | 60.0% | |
| TGTAGGTTCCAGAGGCCTCC+AGG | - | chr4.2:32422396-32422415 | MS.gene001456:intron | 60.0% | |
| ! | ACAGCGCAATGTTGGCTGGC+TGG | - | chr4.2:32422252-32422271 | MS.gene001456:intron | 60.0% |
| !! | GGAGGCCTCTGGAACCTACA+AGG | + | chr4.2:32422396-32422415 | None:intergenic | 60.0% |
| !! | GGATTGGTCGGGTCGTGGAT+TGG | - | chr4.2:32421100-32421119 | MS.gene001456:intron | 60.0% |
| !! | GGTCGGGTCGTGGATTGGTT+GGG | - | chr4.2:32421105-32421124 | MS.gene001456:intron | 60.0% |
| !! | TGGTCGGGTCGTGGATTGGT+TGG | - | chr4.2:32421104-32421123 | MS.gene001456:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 32420039 | 32423799 | 32420039 | ID=MS.gene001456 |
| chr4.2 | mRNA | 32420039 | 32423799 | 32420039 | ID=MS.gene001456.t1;Parent=MS.gene001456 |
| chr4.2 | exon | 32423671 | 32423799 | 32423671 | ID=MS.gene001456.t1.exon1;Parent=MS.gene001456.t1 |
| chr4.2 | CDS | 32423671 | 32423799 | 32423671 | ID=cds.MS.gene001456.t1;Parent=MS.gene001456.t1 |
| chr4.2 | exon | 32423287 | 32423387 | 32423287 | ID=MS.gene001456.t1.exon2;Parent=MS.gene001456.t1 |
| chr4.2 | CDS | 32423287 | 32423387 | 32423287 | ID=cds.MS.gene001456.t1;Parent=MS.gene001456.t1 |
| chr4.2 | exon | 32421340 | 32421437 | 32421340 | ID=MS.gene001456.t1.exon3;Parent=MS.gene001456.t1 |
| chr4.2 | CDS | 32421340 | 32421437 | 32421340 | ID=cds.MS.gene001456.t1;Parent=MS.gene001456.t1 |
| chr4.2 | exon | 32420039 | 32420139 | 32420039 | ID=MS.gene001456.t1.exon4;Parent=MS.gene001456.t1 |
| chr4.2 | CDS | 32420039 | 32420139 | 32420039 | ID=cds.MS.gene001456.t1;Parent=MS.gene001456.t1 |
| Gene Sequence |
| Protein sequence |
