Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006520.t1 | XP_013456604.1 | 98.2 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 4.30E-54 | 220.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006520.t1 | Q0DWQ7 | 50.5 | 103 | 49 | 2 | 8 | 109 | 7 | 108 | 1.4e-21 | 103.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006520.t1 | I3RZJ2 | 98.2 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 3.1e-54 | 220.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052354 | MS.gene006520 | PPI |
| MS.gene74458 | MS.gene006520 | PPI |
| MS.gene006520 | MS.gene001456 | PPI |
| MS.gene006524 | MS.gene006520 | PPI |
| MS.gene006522 | MS.gene006520 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006520.t1 | MTR_4g077240 | 98.165 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 1.12e-75 | 220 |
| MS.gene006520.t1 | MTR_5g008020 | 67.708 | 96 | 31 | 0 | 1 | 96 | 1 | 96 | 1.82e-43 | 137 |
| MS.gene006520.t1 | MTR_5g008020 | 61.111 | 108 | 39 | 1 | 1 | 105 | 1 | 108 | 8.48e-40 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006520.t1 | AT1G67250 | 65.421 | 107 | 37 | 0 | 3 | 109 | 2 | 108 | 5.84e-47 | 147 |
| MS.gene006520.t1 | AT5G38650 | 65.421 | 107 | 37 | 0 | 3 | 109 | 2 | 108 | 1.42e-46 | 146 |
| MS.gene006520.t1 | AT5G38660 | 65.421 | 107 | 37 | 0 | 3 | 109 | 292 | 398 | 2.07e-43 | 146 |
Find 32 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACAGGCAAATTCTTTCT+AGG | 0.239502 | 4.2:-32493421 | MS.gene006520:intron |
| CTGGGTTTGGAGACTGTTAC+AGG | 0.300396 | 4.2:-32491513 | MS.gene006520:CDS |
| TCCTTCTTCAATGCTGGGTT+TGG | 0.302948 | 4.2:-32491526 | MS.gene006520:CDS |
| GGTAATTCCTTCTTCAATGC+TGG | 0.336438 | 4.2:-32491532 | MS.gene006520:CDS |
| CACACCGATGTTCTTCGTTT+CGG | 0.369713 | 4.2:-32493867 | MS.gene006520:CDS |
| TGTAGGTTCCAGAGGCCTCC+AGG | 0.394850 | 4.2:-32491555 | MS.gene006520:intron |
| CGGTGTGGACACCTCCGATT+TGG | 0.398903 | 4.2:+32493883 | None:intergenic |
| GTAATTCCTTCTTCAATGCT+GGG | 0.431838 | 4.2:-32491531 | MS.gene006520:CDS |
| GAATTACCCCTGGAGGCCTC+TGG | 0.462918 | 4.2:+32491547 | None:intergenic |
| CAATGCAAAGTGAACTTGTA+TGG | 0.463197 | 4.2:-32493470 | MS.gene006520:CDS |
| AAGACCATTGCACACCAAAT+CGG | 0.493784 | 4.2:-32493897 | MS.gene006520:CDS |
| GTTCTTCGTTTCGGACTCCC+CGG | 0.510103 | 4.2:-32493858 | MS.gene006520:CDS |
| ACAGGAACTCTTGATCACTT+TGG | 0.516207 | 4.2:-32491495 | MS.gene006520:CDS |
| GTAGGTTCCAGAGGCCTCCA+GGG | 0.520667 | 4.2:-32491554 | MS.gene006520:intron |
| TTGTTCCTTGTAGGTTCCAG+AGG | 0.530160 | 4.2:-32491563 | MS.gene006520:intron |
| CACTCAAGGAGGAACTTGAC+AGG | 0.531487 | 4.2:-32493436 | MS.gene006520:CDS |
| TCCAAACCCAGCATTGAAGA+AGG | 0.541603 | 4.2:+32491525 | None:intergenic |
| GTGTGGAAGAAGCTATGAAA+AGG | 0.569616 | 4.2:-32493493 | MS.gene006520:CDS |
| CTGTCAAGTTCCTCCTTGAG+TGG | 0.571910 | 4.2:+32493437 | None:intergenic |
| AACGATGTCACTCTTGACAC+CGG | 0.575887 | 4.2:+32493839 | None:intergenic |
| ACCTCCGATTTGGTGTGCAA+TGG | 0.590824 | 4.2:+32493893 | None:intergenic |
| ACGATGTCACTCTTGACACC+GGG | 0.595518 | 4.2:+32493840 | None:intergenic |
| ATTGAAGAAGGAATTACCCC+TGG | 0.637004 | 4.2:+32491537 | None:intergenic |
| GGTGTCAAGAGTGACATCGT+TGG | 0.652058 | 4.2:-32493837 | MS.gene006520:CDS |
| ATTGGAGAGATGATTCGAGA+GGG | 0.655080 | 4.2:+32493808 | None:intergenic |
| TAGGTTCCAGAGGCCTCCAG+GGG | 0.666008 | 4.2:-32491553 | MS.gene006520:CDS |
| ACCATTGCACACCAAATCGG+AGG | 0.670349 | 4.2:-32493894 | MS.gene006520:CDS |
| GATTGGAGAGATGATTCGAG+AGG | 0.680344 | 4.2:+32493807 | None:intergenic |
| GAGTCCGAAACGAAGAACAT+CGG | 0.687032 | 4.2:+32493863 | None:intergenic |
| GAAGAAGGAATTACCCCTGG+AGG | 0.721691 | 4.2:+32491540 | None:intergenic |
| CGAAACGAAGAACATCGGTG+TGG | 0.742333 | 4.2:+32493868 | None:intergenic |
| CGATGTCACTCTTGACACCG+GGG | 0.751960 | 4.2:+32493841 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAGGAAAAAAAAAATA+GGG | - | chr4.2:32491729-32491748 | MS.gene006520:intron | 10.0% |
| !!! | TTGTTTTTTATTTTAAAGTT+TGG | - | chr4.2:32491816-32491835 | MS.gene006520:intron | 10.0% |
| !!! | TTTAATTTATCTATTTTTCA+AGG | - | chr4.2:32492004-32492023 | MS.gene006520:intron | 10.0% |
| !! | AAAATTTGTATTGTAGAAAT+TGG | - | chr4.2:32492420-32492439 | MS.gene006520:intron | 15.0% |
| !! | AAATTTGTATTGTAGAAATT+GGG | - | chr4.2:32492421-32492440 | MS.gene006520:intron | 15.0% |
| !! | GAATTTAGGAAAAAAAAAAT+AGG | - | chr4.2:32491728-32491747 | MS.gene006520:intron | 15.0% |
| !! | TCAAATATAAAAGAAAGAAA+TGG | - | chr4.2:32493009-32493028 | MS.gene006520:intron | 15.0% |
| !!! | CTAAGAGTATTTTTTTTTTT+TGG | - | chr4.2:32493243-32493262 | MS.gene006520:intron | 15.0% |
| !!! | TTTTTTTTTTTGGAAAGAAT+AGG | - | chr4.2:32493253-32493272 | MS.gene006520:intron | 15.0% |
| !! | AAAAAAAAAATACTCTTAGC+AGG | + | chr4.2:32493242-32493261 | None:intergenic | 20.0% |
| !! | AAAAAAAAATACTCTTAGCA+GGG | + | chr4.2:32493241-32493260 | None:intergenic | 20.0% |
| !! | AATTTATTACTACATGCATT+GGG | + | chr4.2:32493088-32493107 | None:intergenic | 20.0% |
| !! | AATTTGTATTGTAGAAATTG+GGG | - | chr4.2:32492422-32492441 | MS.gene006520:intron | 20.0% |
| !! | CACTATTAAAAAGATAAACT+CGG | - | chr4.2:32492697-32492716 | MS.gene006520:intron | 20.0% |
| !! | GTTATATGATCTAATTGAAT+AGG | - | chr4.2:32491789-32491808 | MS.gene006520:intron | 20.0% |
| !! | TGAAAAAACAACAATTAGAT+CGG | + | chr4.2:32491667-32491686 | None:intergenic | 20.0% |
| !! | TTACTCTGTTATTAACATAT+GGG | + | chr4.2:32493419-32493438 | None:intergenic | 20.0% |
| !!! | AGTATCTGAAATTAACATAT+GGG | + | chr4.2:32493331-32493350 | None:intergenic | 20.0% |
| !!! | TAGTATCTGAAATTAACATA+TGG | + | chr4.2:32493332-32493351 | None:intergenic | 20.0% |
| ! | ACAAATAAATTAACGTGCTA+TGG | - | chr4.2:32493109-32493128 | MS.gene006520:intron | 25.0% |
| ! | AGCAAATCTTATGTTTAAAG+AGG | - | chr4.2:32493196-32493215 | MS.gene006520:intron | 25.0% |
| ! | ATTTGTATTGTAGAAATTGG+GGG | - | chr4.2:32492423-32492442 | MS.gene006520:intron | 25.0% |
| ! | CAATTTATTACTACATGCAT+TGG | + | chr4.2:32493089-32493108 | None:intergenic | 25.0% |
| ! | CTTACTCTGTTATTAACATA+TGG | + | chr4.2:32493420-32493439 | None:intergenic | 25.0% |
| ! | GAAAAAACAACAATTAGATC+GGG | + | chr4.2:32491666-32491685 | None:intergenic | 25.0% |
| ! | TTGAAAGGAAAATACTTTCT+GGG | - | chr4.2:32492267-32492286 | MS.gene006520:intron | 25.0% |
| !! | TCATTCACAGTTCATATTTT+GGG | - | chr4.2:32493568-32493587 | MS.gene006520:intron | 25.0% |
| !! | TTCATTCACAGTTCATATTT+TGG | - | chr4.2:32493567-32493586 | MS.gene006520:intron | 25.0% |
| !!! | ATGTGTGTTTGTTTTCATTT+GGG | - | chr4.2:32491852-32491871 | MS.gene006520:intron | 25.0% |
| !!! | TATGTGTGTTTGTTTTCATT+TGG | - | chr4.2:32491851-32491870 | MS.gene006520:intron | 25.0% |
| AAACACGGAAAGATTAAAAC+AGG | + | chr4.2:32491636-32491655 | None:intergenic | 30.0% | |
| AAACTGAAACAGAAAGAAAG+AGG | + | chr4.2:32491613-32491632 | None:intergenic | 30.0% | |
| AACTGAAACAGAAAGAAAGA+GGG | + | chr4.2:32491612-32491631 | None:intergenic | 30.0% | |
| AATGAAATTTCTACTAGGAG+TGG | + | chr4.2:32493553-32493572 | None:intergenic | 30.0% | |
| ACTCACTACTAATACAAACA+AGG | + | chr4.2:32492066-32492085 | None:intergenic | 30.0% | |
| AGTGAGTGTTTGAATTTGTA+TGG | - | chr4.2:32492079-32492098 | MS.gene006520:intron | 30.0% | |
| AGTGTTTGAATTTGTATGGT+AGG | - | chr4.2:32492083-32492102 | MS.gene006520:intron | 30.0% | |
| ATATGTTAATTTCAGTCACC+GGG | - | chr4.2:32493503-32493522 | MS.gene006520:CDS | 30.0% | |
| ATATTACCATTGTTCCTTGT+AGG | - | chr4.2:32493815-32493834 | MS.gene006520:CDS | 30.0% | |
| CATATGTTAATTTCAGTCAC+CGG | - | chr4.2:32493502-32493521 | MS.gene006520:CDS | 30.0% | |
| CCATATCCATATGAAAGAAT+AGG | + | chr4.2:32493369-32493388 | None:intergenic | 30.0% | |
| CCTATTCTTTCATATGGATA+TGG | - | chr4.2:32493366-32493385 | MS.gene006520:intron | 30.0% | |
| CGAACACATTTCTTCATAAT+CGG | + | chr4.2:32492816-32492835 | None:intergenic | 30.0% | |
| CTGTGAATGAAATTTCTACT+AGG | + | chr4.2:32493558-32493577 | None:intergenic | 30.0% | |
| CTTGAAAGGAAAATACTTTC+TGG | - | chr4.2:32492266-32492285 | MS.gene006520:intron | 30.0% | |
| GACTGAAATTAACATATGGA+TGG | + | chr4.2:32493500-32493519 | None:intergenic | 30.0% | |
| TACAAGGAACAATGGTAATA+TGG | + | chr4.2:32493816-32493835 | None:intergenic | 30.0% | |
| TCAGATCCTATTCTTTCATA+TGG | - | chr4.2:32493360-32493379 | MS.gene006520:intron | 30.0% | |
| TGAATGTGAGTTAACTAACT+TGG | - | chr4.2:32492213-32492232 | MS.gene006520:intron | 30.0% | |
| ! | CTCTCTACTTGTTAAAAACA+AGG | + | chr4.2:32492396-32492415 | None:intergenic | 30.0% |
| ! | TCTTATGTTTAAAGAGGCAT+CGG | - | chr4.2:32493202-32493221 | MS.gene006520:intron | 30.0% |
| ! | TTTTCCTAAATTCAAAACCC+TGG | + | chr4.2:32491721-32491740 | None:intergenic | 30.0% |
| !! | ACAGTTCATATTTTGGGTAA+TGG | - | chr4.2:32493574-32493593 | MS.gene006520:intron | 30.0% |
| !! | AGATTCATATGGATTTTGAC+CGG | + | chr4.2:32493453-32493472 | None:intergenic | 30.0% |
| !! | CAGTTCATATTTTGGGTAAT+GGG | - | chr4.2:32493575-32493594 | MS.gene006520:intron | 30.0% |
| !!! | TTCATTTGGGTGTTGTTTTT+AGG | - | chr4.2:32491865-32491884 | MS.gene006520:intron | 30.0% |
| AAGAAAGAGGGATTACAGAT+TGG | + | chr4.2:32491600-32491619 | None:intergenic | 35.0% | |
| AGATATCTCAACTGTGGTTA+TGG | + | chr4.2:32492489-32492508 | None:intergenic | 35.0% | |
| AGATCGGGTAAAGATAAACA+CGG | + | chr4.2:32491651-32491670 | None:intergenic | 35.0% | |
| AGCTCATATATTGGGGAAAT+AGG | - | chr4.2:32492118-32492137 | MS.gene006520:intron | 35.0% | |
| AGGCAAATTCTTTCTAGGTA+CGG | - | chr4.2:32491971-32491990 | MS.gene006520:intron | 35.0% | |
| ATATGGGAAACCATATCCAA+CGG | + | chr4.2:32493315-32493334 | None:intergenic | 35.0% | |
| CAATGCAAAGTGAACTTGTA+TGG | - | chr4.2:32491917-32491936 | MS.gene006520:intron | 35.0% | |
| CGGTGACTGAAATTAACATA+TGG | + | chr4.2:32493504-32493523 | None:intergenic | 35.0% | |
| CTCTCAAGTCAAAGTTTACA+TGG | + | chr4.2:32492738-32492757 | None:intergenic | 35.0% | |
| GAATGCAAGCTAAATCATGT+TGG | - | chr4.2:32493618-32493637 | MS.gene006520:intron | 35.0% | |
| GCAAATCATCAAATCACATG+AGG | + | chr4.2:32493717-32493736 | None:intergenic | 35.0% | |
| GTAATTCCTTCTTCAATGCT+GGG | - | chr4.2:32493856-32493875 | MS.gene006520:CDS | 35.0% | |
| GTGAGTTAACTAACTTGGTA+TGG | - | chr4.2:32492218-32492237 | MS.gene006520:intron | 35.0% | |
| GTTGGGTACTAAGATTCATA+TGG | + | chr4.2:32493464-32493483 | None:intergenic | 35.0% | |
| TACTGAATGAGGAACTTGAA+AGG | - | chr4.2:32492252-32492271 | MS.gene006520:intron | 35.0% | |
| TCAATCGCAGCTCATATATT+GGG | - | chr4.2:32492110-32492129 | MS.gene006520:intron | 35.0% | |
| TTCAATCGCAGCTCATATAT+TGG | - | chr4.2:32492109-32492128 | MS.gene006520:intron | 35.0% | |
| TTGACAGGCAAATTCTTTCT+AGG | - | chr4.2:32491966-32491985 | MS.gene006520:intron | 35.0% | |
| TTTATTGCTAAGAGAGAGAG+TGG | - | chr4.2:32493772-32493791 | MS.gene006520:intron | 35.0% | |
| ! | CACTGTGAAATCTGAGATAT+AGG | + | chr4.2:32492608-32492627 | None:intergenic | 35.0% |
| ! | TTTGAGACTCACAAATTGAC+AGG | + | chr4.2:32493177-32493196 | None:intergenic | 35.0% |
| ! | TTTTGATGTTAGCGATTCCA+GGG | - | chr4.2:32491701-32491720 | MS.gene006520:intron | 35.0% |
| !! | ATTTTGATGTTAGCGATTCC+AGG | - | chr4.2:32491700-32491719 | MS.gene006520:intron | 35.0% |
| !! | CCAAATCAAAGAGCTTTAGA+AGG | - | chr4.2:32492900-32492919 | MS.gene006520:intron | 35.0% |
| !! | CCTTCTAAAGCTCTTTGATT+TGG | + | chr4.2:32492903-32492922 | None:intergenic | 35.0% |
| !! | TTTCAAGTTCCTCATTCAGT+AGG | + | chr4.2:32492253-32492272 | None:intergenic | 35.0% |
| !!! | ATTTTGGGTAATGGGAACAT+AGG | - | chr4.2:32493583-32493602 | MS.gene006520:intron | 35.0% |
| !!! | GATTCCAGGGTTTTGAATTT+AGG | - | chr4.2:32491714-32491733 | MS.gene006520:intron | 35.0% |
| !!! | TGGGTGTTGTTTTTAGGTAA+GGG | - | chr4.2:32491871-32491890 | MS.gene006520:intron | 35.0% |
| !!! | TTGGGTGTTGTTTTTAGGTA+AGG | - | chr4.2:32491870-32491889 | MS.gene006520:intron | 35.0% |
| AAACAGCATATGACCAAACC+CGG | + | chr4.2:32493524-32493543 | None:intergenic | 40.0% | |
| AACATATGGATGGTCTCTTG+TGG | + | chr4.2:32493490-32493509 | None:intergenic | 40.0% | |
| AAGACCATTGCACACCAAAT+CGG | - | chr4.2:32491490-32491509 | MS.gene006520:CDS | 40.0% | |
| ACAGGAACTCTTGATCACTT+TGG | - | chr4.2:32493892-32493911 | MS.gene006520:CDS | 40.0% | |
| ACATATGGATGGTCTCTTGT+GGG | + | chr4.2:32493489-32493508 | None:intergenic | 40.0% | |
| ACTTTCTGGGTACGAGTATT+TGG | - | chr4.2:32492280-32492299 | MS.gene006520:intron | 40.0% | |
| ATCTCAACTGTGGTTATGGA+AGG | + | chr4.2:32492485-32492504 | None:intergenic | 40.0% | |
| ATTGAAGAAGGAATTACCCC+TGG | + | chr4.2:32493853-32493872 | None:intergenic | 40.0% | |
| ATTGGAGAGATGATTCGAGA+GGG | + | chr4.2:32491582-32491601 | None:intergenic | 40.0% | |
| CAATCGCAGCTCATATATTG+GGG | - | chr4.2:32492111-32492130 | MS.gene006520:intron | 40.0% | |
| GGATGTAGATATCTCAACTG+TGG | + | chr4.2:32492495-32492514 | None:intergenic | 40.0% | |
| GGCAAATTCTTTCTAGGTAC+GGG | - | chr4.2:32491972-32491991 | MS.gene006520:intron | 40.0% | |
| GGTAATTCCTTCTTCAATGC+TGG | - | chr4.2:32493855-32493874 | MS.gene006520:CDS | 40.0% | |
| GTGTGGAAGAAGCTATGAAA+AGG | - | chr4.2:32491894-32491913 | MS.gene006520:intron | 40.0% | |
| GTTAACTAACAGCGCAATGT+TGG | - | chr4.2:32493680-32493699 | MS.gene006520:intron | 40.0% | |
| TGGGGAAATAGGACAAACAA+TGG | - | chr4.2:32492129-32492148 | MS.gene006520:intron | 40.0% | |
| TGTATTGTAGAAATTGGGGG+TGG | - | chr4.2:32492426-32492445 | MS.gene006520:intron | 40.0% | |
| TTAATTTCAGTCACCGGGTT+TGG | - | chr4.2:32493508-32493527 | MS.gene006520:intron | 40.0% | |
| !! | AGCTGTTTTCCTACTGAATG+AGG | - | chr4.2:32492241-32492260 | MS.gene006520:intron | 40.0% |
| !!! | GGGTGTTGTTTTTAGGTAAG+GGG | - | chr4.2:32491872-32491891 | MS.gene006520:intron | 40.0% |
| !!! | TTGTTTTTAGGTAAGGGGTG+TGG | - | chr4.2:32491877-32491896 | MS.gene006520:intron | 40.0% |
| AACGATGTCACTCTTGACAC+CGG | + | chr4.2:32491551-32491570 | None:intergenic | 45.0% | |
| AAGCAGTCGAGATGATTGTG+TGG | - | chr4.2:32492924-32492943 | MS.gene006520:intron | 45.0% | |
| AGAAATTGGGGGTGGATGAT+CGG | - | chr4.2:32492434-32492453 | MS.gene006520:intron | 45.0% | |
| CAATCCACATTCCAAACGGA+CGG | + | chr4.2:32492522-32492541 | None:intergenic | 45.0% | |
| CACACCGATGTTCTTCGTTT+CGG | - | chr4.2:32491520-32491539 | MS.gene006520:CDS | 45.0% | |
| CGACCAATCCACATTCCAAA+CGG | + | chr4.2:32492526-32492545 | None:intergenic | 45.0% | |
| CTGGAACCTACAAGGAACAA+TGG | + | chr4.2:32493824-32493843 | None:intergenic | 45.0% | |
| GAGTCCGAAACGAAGAACAT+CGG | + | chr4.2:32491527-32491546 | None:intergenic | 45.0% | |
| GATTGGAGAGATGATTCGAG+AGG | + | chr4.2:32491583-32491602 | None:intergenic | 45.0% | |
| GTGTTCGAATCACCATGCTT+AGG | - | chr4.2:32492829-32492848 | MS.gene006520:intron | 45.0% | |
| TCCTTCTTCAATGCTGGGTT+TGG | - | chr4.2:32493861-32493880 | MS.gene006520:CDS | 45.0% | |
| TGACTCAAGCTCAAGAGTAG+AGG | + | chr4.2:32492992-32493011 | None:intergenic | 45.0% | |
| TGCAATATGCCACCTAAGCA+TGG | + | chr4.2:32492844-32492863 | None:intergenic | 45.0% | |
| TTCGAATCACCATGCTTAGG+TGG | - | chr4.2:32492832-32492851 | MS.gene006520:intron | 45.0% | |
| TTGTTCCTTGTAGGTTCCAG+AGG | - | chr4.2:32493824-32493843 | MS.gene006520:CDS | 45.0% | |
| ! | ATGGTCTCTTGTGGGTTGTT+GGG | + | chr4.2:32493481-32493500 | None:intergenic | 45.0% |
| ! | TCCAAACCCAGCATTGAAGA+AGG | + | chr4.2:32493865-32493884 | None:intergenic | 45.0% |
| !! | CGTTTGGAATGTGGATTGGT+CGG | - | chr4.2:32492524-32492543 | MS.gene006520:intron | 45.0% |
| !! | GTTTGGAATGTGGATTGGTC+GGG | - | chr4.2:32492525-32492544 | MS.gene006520:intron | 45.0% |
| ACATTCCAAACGGACGGTGA+TGG | + | chr4.2:32492516-32492535 | None:intergenic | 50.0% | |
| ACCATTGCACACCAAATCGG+AGG | - | chr4.2:32491493-32491512 | MS.gene006520:CDS | 50.0% | |
| ACGATGTCACTCTTGACACC+GGG | + | chr4.2:32491550-32491569 | None:intergenic | 50.0% | |
| ACTAACAGCGCAATGTTGGC+TGG | - | chr4.2:32493684-32493703 | MS.gene006520:intron | 50.0% | |
| CACTCAAGGAGGAACTTGAC+AGG | - | chr4.2:32491951-32491970 | MS.gene006520:intron | 50.0% | |
| CAGAGTAAGAATAGCAGCGC+CGG | - | chr4.2:32493431-32493450 | MS.gene006520:CDS | 50.0% | |
| CGAAACGAAGAACATCGGTG+TGG | + | chr4.2:32491522-32491541 | None:intergenic | 50.0% | |
| CTGGGTTTGGAGACTGTTAC+AGG | - | chr4.2:32493874-32493893 | MS.gene006520:CDS | 50.0% | |
| CTGTCAAGTTCCTCCTTGAG+TGG | + | chr4.2:32491953-32491972 | None:intergenic | 50.0% | |
| GAAGAAGGAATTACCCCTGG+AGG | + | chr4.2:32493850-32493869 | None:intergenic | 50.0% | |
| GGTGTCAAGAGTGACATCGT+TGG | - | chr4.2:32491550-32491569 | MS.gene006520:CDS | 50.0% | |
| TACATCCATCACCGTCCGTT+TGG | - | chr4.2:32492508-32492527 | MS.gene006520:intron | 50.0% | |
| TCGAGATGATTGTGTGGCAG+TGG | - | chr4.2:32492930-32492949 | MS.gene006520:intron | 50.0% | |
| TGGATATGGTTGTCGCGCAT+CGG | - | chr4.2:32493380-32493399 | MS.gene006520:intron | 50.0% | |
| TGTGGCAGTGGCAAGTATTC+TGG | - | chr4.2:32492942-32492961 | MS.gene006520:intron | 50.0% | |
| ! | ATCACCGTCCGTTTGGAATG+TGG | - | chr4.2:32492515-32492534 | MS.gene006520:intron | 50.0% |
| ! | CGTCCGTTTGGAATGTGGAT+TGG | - | chr4.2:32492520-32492539 | MS.gene006520:intron | 50.0% |
| ! | GATGGTCTCTTGTGGGTTGT+TGG | + | chr4.2:32493482-32493501 | None:intergenic | 50.0% |
| !! | ACCTCCGATTTGGTGTGCAA+TGG | + | chr4.2:32491497-32491516 | None:intergenic | 50.0% |
| !! | TGTCGCGCATCGGTTGAATA+TGG | - | chr4.2:32493390-32493409 | MS.gene006520:intron | 50.0% |
| !!! | AGCTGCTTTTCCACTCAAGG+AGG | - | chr4.2:32491940-32491959 | MS.gene006520:intron | 50.0% |
| !!! | TGGAGCTGCTTTTCCACTCA+AGG | - | chr4.2:32491937-32491956 | MS.gene006520:intron | 50.0% |
| AGCAGCGCATCCGTTGGATA+TGG | - | chr4.2:32493302-32493321 | MS.gene006520:intron | 55.0% | |
| ATTGGGGGTGGATGATCGGT+TGG | - | chr4.2:32492438-32492457 | MS.gene006520:intron | 55.0% | |
| CAACGGATGCGCTGCTATTC+TGG | + | chr4.2:32493298-32493317 | None:intergenic | 55.0% | |
| CAGAATAGCAGCGCATCCGT+TGG | - | chr4.2:32493296-32493315 | MS.gene006520:intron | 55.0% | |
| CGATGTCACTCTTGACACCG+GGG | + | chr4.2:32491549-32491568 | None:intergenic | 55.0% | |
| GTTCTTCGTTTCGGACTCCC+CGG | - | chr4.2:32491529-32491548 | MS.gene006520:CDS | 55.0% | |
| !! | AATGTGGATTGGTCGGGTCG+TGG | - | chr4.2:32492531-32492550 | MS.gene006520:intron | 55.0% |
| !! | CGTGGATTGGTTGGGCTTTC+AGG | - | chr4.2:32492549-32492568 | MS.gene006520:intron | 55.0% |
| CGGTGTGGACACCTCCGATT+TGG | + | chr4.2:32491507-32491526 | None:intergenic | 60.0% | |
| GAATTACCCCTGGAGGCCTC+TGG | + | chr4.2:32493843-32493862 | None:intergenic | 60.0% | |
| GTAGGTTCCAGAGGCCTCCA+GGG | - | chr4.2:32493833-32493852 | MS.gene006520:CDS | 60.0% | |
| TAGGTTCCAGAGGCCTCCAG+GGG | - | chr4.2:32493834-32493853 | MS.gene006520:CDS | 60.0% | |
| TGTAGGTTCCAGAGGCCTCC+AGG | - | chr4.2:32493832-32493851 | MS.gene006520:CDS | 60.0% | |
| ! | ACAGCGCAATGTTGGCTGGC+TGG | - | chr4.2:32493688-32493707 | MS.gene006520:intron | 60.0% |
| !! | GGAGGCCTCTGGAACCTACA+AGG | + | chr4.2:32493832-32493851 | None:intergenic | 60.0% |
| !! | GGATTGGTCGGGTCGTGGAT+TGG | - | chr4.2:32492536-32492555 | MS.gene006520:intron | 60.0% |
| !! | GGTCGGGTCGTGGATTGGTT+GGG | - | chr4.2:32492541-32492560 | MS.gene006520:intron | 60.0% |
| !! | TGGTCGGGTCGTGGATTGGT+TGG | - | chr4.2:32492540-32492559 | MS.gene006520:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 32491475 | 32493934 | 32491475 | ID=MS.gene006520 |
| chr4.2 | mRNA | 32491475 | 32493934 | 32491475 | ID=MS.gene006520.t1;Parent=MS.gene006520 |
| chr4.2 | exon | 32493806 | 32493934 | 32493806 | ID=MS.gene006520.t1.exon1;Parent=MS.gene006520.t1 |
| chr4.2 | CDS | 32493806 | 32493934 | 32493806 | ID=cds.MS.gene006520.t1;Parent=MS.gene006520.t1 |
| chr4.2 | exon | 32493422 | 32493522 | 32493422 | ID=MS.gene006520.t1.exon2;Parent=MS.gene006520.t1 |
| chr4.2 | CDS | 32493422 | 32493522 | 32493422 | ID=cds.MS.gene006520.t1;Parent=MS.gene006520.t1 |
| chr4.2 | exon | 32491475 | 32491572 | 32491475 | ID=MS.gene006520.t1.exon3;Parent=MS.gene006520.t1 |
| chr4.2 | CDS | 32491475 | 32491572 | 32491475 | ID=cds.MS.gene006520.t1;Parent=MS.gene006520.t1 |
| Gene Sequence |
| Protein sequence |
