Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74458.t1 | XP_013456604.1 | 98.2 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 4.30E-54 | 220.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74458.t1 | Q0DWQ7 | 50.5 | 103 | 49 | 2 | 8 | 109 | 7 | 108 | 1.4e-21 | 103.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74458.t1 | I3RZJ2 | 98.2 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 3.1e-54 | 220.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene74458 | 0.800203 | 1.61E-48 | -1.69E-46 |
| MS.gene050277 | MS.gene74458 | 0.819115 | 1.38E-52 | -1.69E-46 |
| MS.gene050320 | MS.gene74458 | 0.816552 | 5.21E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene74458 | 0.848303 | 6.68E-60 | -1.69E-46 |
| MS.gene050689 | MS.gene74458 | 0.808746 | 2.66E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene74458 | 0.860863 | 1.54E-63 | -1.69E-46 |
| MS.gene050838 | MS.gene74458 | 0.8252 | 5.34E-54 | -1.69E-46 |
| MS.gene050955 | MS.gene74458 | 0.834515 | 2.87E-56 | -1.69E-46 |
| MS.gene051003 | MS.gene74458 | 0.854648 | 1.07E-61 | -1.69E-46 |
| MS.gene051234 | MS.gene74458 | 0.814038 | 1.89E-51 | -1.69E-46 |
| MS.gene051245 | MS.gene74458 | 0.804952 | 1.69E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene74458 | 0.825215 | 5.29E-54 | -1.69E-46 |
| MS.gene051746 | MS.gene74458 | 0.803926 | 2.76E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene74458 | 0.807984 | 3.87E-50 | -1.69E-46 |
| MS.gene051756 | MS.gene74458 | 0.812785 | 3.56E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene74458 | 0.801739 | 7.81E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene74458 | 0.80917 | 2.16E-50 | -1.69E-46 |
| MS.gene052335 | MS.gene74458 | 0.812274 | 4.60E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene74458 | 0.817594 | 3.04E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene74458 | 0.814805 | 1.28E-51 | -1.69E-46 |
| MS.gene053109 | MS.gene74458 | 0.839122 | 1.91E-57 | -1.69E-46 |
| MS.gene053590 | MS.gene74458 | 0.838814 | 2.30E-57 | -1.69E-46 |
| MS.gene054403 | MS.gene74458 | 0.856248 | 3.66E-62 | -1.69E-46 |
| MS.gene05469 | MS.gene74458 | 0.846822 | 1.71E-59 | -1.69E-46 |
| MS.gene055311 | MS.gene74458 | 0.818222 | 2.19E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene74458 | 0.802563 | 5.29E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene74458 | 0.810031 | 1.41E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene74458 | 0.810875 | 9.27E-51 | -1.69E-46 |
| MS.gene056787 | MS.gene74458 | 0.815861 | 7.44E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene74458 | 0.811141 | 8.12E-51 | -1.69E-46 |
| MS.gene057206 | MS.gene74458 | 0.803775 | 2.97E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene74458 | 0.826418 | 2.74E-54 | -1.69E-46 |
| MS.gene058055 | MS.gene74458 | 0.80264 | 5.10E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene74458 | 0.811818 | 5.79E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene74458 | 0.801006 | 1.10E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene74458 | 0.802692 | 4.97E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene74458 | 0.810524 | 1.10E-50 | -1.69E-46 |
| MS.gene060463 | MS.gene74458 | 0.802019 | 6.84E-49 | -1.69E-46 |
| MS.gene060465 | MS.gene74458 | 0.81029 | 1.24E-50 | -1.69E-46 |
| MS.gene060702 | MS.gene74458 | 0.811881 | 5.61E-51 | -1.69E-46 |
| MS.gene061145 | MS.gene74458 | 0.802623 | 5.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74458 | MS.gene006522 | PPI |
| MS.gene74458 | MS.gene006520 | PPI |
| MS.gene74458 | MS.gene006524 | PPI |
| MS.gene74458 | MS.gene052354 | PPI |
| MS.gene74458 | MS.gene001456 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74458.t1 | MTR_4g077240 | 98.165 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 1.12e-75 | 220 |
| MS.gene74458.t1 | MTR_5g008020 | 67.708 | 96 | 31 | 0 | 1 | 96 | 1 | 96 | 1.82e-43 | 137 |
| MS.gene74458.t1 | MTR_5g008020 | 61.111 | 108 | 39 | 1 | 1 | 105 | 1 | 108 | 8.48e-40 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74458.t1 | AT1G67250 | 65.421 | 107 | 37 | 0 | 3 | 109 | 2 | 108 | 5.84e-47 | 147 |
| MS.gene74458.t1 | AT5G38650 | 65.421 | 107 | 37 | 0 | 3 | 109 | 2 | 108 | 1.42e-46 | 146 |
| MS.gene74458.t1 | AT5G38660 | 65.421 | 107 | 37 | 0 | 3 | 109 | 292 | 398 | 2.07e-43 | 146 |
Find 32 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACAGGCAAATTCTTTCT+AGG | 0.239502 | 4.2:-32461198 | MS.gene74458:intron |
| CTGGGTTTGGAGACTGTTAC+AGG | 0.300396 | 4.2:-32459292 | MS.gene74458:CDS |
| TCCTTCTTCAATGCTGGGTT+TGG | 0.302948 | 4.2:-32459305 | MS.gene74458:CDS |
| GGTAATTCCTTCTTCAATGC+TGG | 0.336438 | 4.2:-32459311 | MS.gene74458:CDS |
| CACACCGATGTTCTTCGTTT+CGG | 0.369713 | 4.2:-32461644 | MS.gene74458:CDS |
| TGTAGGTTCCAGAGGCCTCC+AGG | 0.394850 | 4.2:-32459334 | MS.gene74458:intron |
| CGGTGTGGACACCTCCGATT+TGG | 0.398903 | 4.2:+32461660 | None:intergenic |
| GTAATTCCTTCTTCAATGCT+GGG | 0.431838 | 4.2:-32459310 | MS.gene74458:CDS |
| GAATTACCCCTGGAGGCCTC+TGG | 0.462918 | 4.2:+32459326 | None:intergenic |
| CAATGCAAAGTGAACTTGTA+TGG | 0.463197 | 4.2:-32461247 | MS.gene74458:CDS |
| AAGACCATTGCACACCAAAT+CGG | 0.493784 | 4.2:-32461674 | MS.gene74458:CDS |
| GTTCTTCGTTTCGGACTCCC+CGG | 0.510103 | 4.2:-32461635 | MS.gene74458:CDS |
| ACAGGAACTCTTGATCACTT+TGG | 0.516207 | 4.2:-32459274 | MS.gene74458:CDS |
| GTAGGTTCCAGAGGCCTCCA+GGG | 0.520667 | 4.2:-32459333 | MS.gene74458:intron |
| TTGTTCCTTGTAGGTTCCAG+AGG | 0.530160 | 4.2:-32459342 | MS.gene74458:intron |
| CACTCAAGGAGGAACTTGAC+AGG | 0.531487 | 4.2:-32461213 | MS.gene74458:CDS |
| TCCAAACCCAGCATTGAAGA+AGG | 0.541603 | 4.2:+32459304 | None:intergenic |
| GTGTGGAAGAAGCTATGAAA+AGG | 0.569616 | 4.2:-32461270 | MS.gene74458:CDS |
| CTGTCAAGTTCCTCCTTGAG+TGG | 0.571910 | 4.2:+32461214 | None:intergenic |
| AACGATGTCACTCTTGACAC+CGG | 0.575887 | 4.2:+32461616 | None:intergenic |
| ACCTCCGATTTGGTGTGCAA+TGG | 0.590824 | 4.2:+32461670 | None:intergenic |
| ACGATGTCACTCTTGACACC+GGG | 0.595518 | 4.2:+32461617 | None:intergenic |
| ATTGAAGAAGGAATTACCCC+TGG | 0.637004 | 4.2:+32459316 | None:intergenic |
| GGTGTCAAGAGTGACATCGT+TGG | 0.652058 | 4.2:-32461614 | MS.gene74458:CDS |
| ATTGGAGAGATGATTCGAGA+GGG | 0.655080 | 4.2:+32461585 | None:intergenic |
| TAGGTTCCAGAGGCCTCCAG+GGG | 0.666008 | 4.2:-32459332 | MS.gene74458:CDS |
| ACCATTGCACACCAAATCGG+AGG | 0.670349 | 4.2:-32461671 | MS.gene74458:CDS |
| GATTGGAGAGATGATTCGAG+AGG | 0.680344 | 4.2:+32461584 | None:intergenic |
| GAGTCCGAAACGAAGAACAT+CGG | 0.687032 | 4.2:+32461640 | None:intergenic |
| GAAGAAGGAATTACCCCTGG+AGG | 0.721691 | 4.2:+32459319 | None:intergenic |
| CGAAACGAAGAACATCGGTG+TGG | 0.742333 | 4.2:+32461645 | None:intergenic |
| CGATGTCACTCTTGACACCG+GGG | 0.751960 | 4.2:+32461618 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAGGAAAAAAAAAATA+GGG | - | chr4.2:32459508-32459527 | MS.gene74458:intron | 10.0% |
| !!! | TTGTTTTTTATTTTAAAGTT+TGG | - | chr4.2:32459595-32459614 | MS.gene74458:intron | 10.0% |
| !!! | TTTAATTTATCTATTTTTCA+AGG | - | chr4.2:32459783-32459802 | MS.gene74458:intron | 10.0% |
| !! | AAAATTTGTATTGTAGAAAT+TGG | - | chr4.2:32460199-32460218 | MS.gene74458:intron | 15.0% |
| !! | AAATTTGTATTGTAGAAATT+GGG | - | chr4.2:32460200-32460219 | MS.gene74458:intron | 15.0% |
| !! | GAATTTAGGAAAAAAAAAAT+AGG | - | chr4.2:32459507-32459526 | MS.gene74458:intron | 15.0% |
| !! | TCAAATATAAAAGAAAGAAA+TGG | - | chr4.2:32460786-32460805 | MS.gene74458:intron | 15.0% |
| !!! | CTAAGAGTATTTTTTTTTTT+TGG | - | chr4.2:32461020-32461039 | MS.gene74458:intron | 15.0% |
| !!! | TTTTTTTTTTTGGAAAGAAT+AGG | - | chr4.2:32461030-32461049 | MS.gene74458:intron | 15.0% |
| !! | AAAAAAAAAATACTCTTAGC+AGG | + | chr4.2:32461019-32461038 | None:intergenic | 20.0% |
| !! | AAAAAAAAATACTCTTAGCA+GGG | + | chr4.2:32461018-32461037 | None:intergenic | 20.0% |
| !! | AATTTATTACTACATGCATT+GGG | + | chr4.2:32460865-32460884 | None:intergenic | 20.0% |
| !! | AATTTGTATTGTAGAAATTG+GGG | - | chr4.2:32460201-32460220 | MS.gene74458:intron | 20.0% |
| !! | ACACTATTAAAAAGATAACT+CGG | - | chr4.2:32460474-32460493 | MS.gene74458:intron | 20.0% |
| !! | GTTATATGATCTAATTGAAT+AGG | - | chr4.2:32459568-32459587 | MS.gene74458:intron | 20.0% |
| !! | TGAAAAAACAACAATTAGAT+CGG | + | chr4.2:32459446-32459465 | None:intergenic | 20.0% |
| !! | TTACTCTGTTATTAACATAT+GGG | + | chr4.2:32461196-32461215 | None:intergenic | 20.0% |
| !!! | AGTATCTGAAATTAACATAT+GGG | + | chr4.2:32461108-32461127 | None:intergenic | 20.0% |
| !!! | TAGTATCTGAAATTAACATA+TGG | + | chr4.2:32461109-32461128 | None:intergenic | 20.0% |
| ! | ACAAATAAATTAACGTGCTA+TGG | - | chr4.2:32460886-32460905 | MS.gene74458:intron | 25.0% |
| ! | AGCAAATCTTATGTTTAAAG+AGG | - | chr4.2:32460973-32460992 | MS.gene74458:intron | 25.0% |
| ! | ATTTGTATTGTAGAAATTGG+GGG | - | chr4.2:32460202-32460221 | MS.gene74458:intron | 25.0% |
| ! | CAATTTATTACTACATGCAT+TGG | + | chr4.2:32460866-32460885 | None:intergenic | 25.0% |
| ! | CTTACTCTGTTATTAACATA+TGG | + | chr4.2:32461197-32461216 | None:intergenic | 25.0% |
| ! | GAAAAAACAACAATTAGATC+GGG | + | chr4.2:32459445-32459464 | None:intergenic | 25.0% |
| ! | TTGAAAGGAAAATACTTTCT+GGG | - | chr4.2:32460046-32460065 | MS.gene74458:intron | 25.0% |
| !! | TCATTCACAGTTCATATTTT+GGG | - | chr4.2:32461345-32461364 | MS.gene74458:intron | 25.0% |
| !! | TTCATTCACAGTTCATATTT+TGG | - | chr4.2:32461344-32461363 | MS.gene74458:intron | 25.0% |
| !!! | ATGTGTGTTTGTTTTCATTT+GGG | - | chr4.2:32459631-32459650 | MS.gene74458:intron | 25.0% |
| !!! | TATGTGTGTTTGTTTTCATT+TGG | - | chr4.2:32459630-32459649 | MS.gene74458:intron | 25.0% |
| AAACACGGAAAGATTAAAAC+AGG | + | chr4.2:32459415-32459434 | None:intergenic | 30.0% | |
| AAACTGAAACAGAAAGAAAG+AGG | + | chr4.2:32459392-32459411 | None:intergenic | 30.0% | |
| AACTGAAACAGAAAGAAAGA+GGG | + | chr4.2:32459391-32459410 | None:intergenic | 30.0% | |
| AATGAAATTTCTACTAGGAG+TGG | + | chr4.2:32461330-32461349 | None:intergenic | 30.0% | |
| ACTCACTACTAATACAAACA+AGG | + | chr4.2:32459845-32459864 | None:intergenic | 30.0% | |
| AGTGAGTGTTTGAATTTGTA+TGG | - | chr4.2:32459858-32459877 | MS.gene74458:intron | 30.0% | |
| AGTGTTTGAATTTGTATGGT+AGG | - | chr4.2:32459862-32459881 | MS.gene74458:intron | 30.0% | |
| ATATGTTAATTTCAGTCACC+GGG | - | chr4.2:32461280-32461299 | MS.gene74458:CDS | 30.0% | |
| ATATTACCATTGTTCCTTGT+AGG | - | chr4.2:32461592-32461611 | MS.gene74458:CDS | 30.0% | |
| CATATGTTAATTTCAGTCAC+CGG | - | chr4.2:32461279-32461298 | MS.gene74458:CDS | 30.0% | |
| CCATATCCATATGAAAGAAT+AGG | + | chr4.2:32461146-32461165 | None:intergenic | 30.0% | |
| CCTATTCTTTCATATGGATA+TGG | - | chr4.2:32461143-32461162 | MS.gene74458:intron | 30.0% | |
| CGAACACATTTCTTCATAAT+CGG | + | chr4.2:32460593-32460612 | None:intergenic | 30.0% | |
| CTGTGAATGAAATTTCTACT+AGG | + | chr4.2:32461335-32461354 | None:intergenic | 30.0% | |
| CTTGAAAGGAAAATACTTTC+TGG | - | chr4.2:32460045-32460064 | MS.gene74458:intron | 30.0% | |
| GACTGAAATTAACATATGGA+TGG | + | chr4.2:32461277-32461296 | None:intergenic | 30.0% | |
| TACAAGGAACAATGGTAATA+TGG | + | chr4.2:32461593-32461612 | None:intergenic | 30.0% | |
| TCAGATCCTATTCTTTCATA+TGG | - | chr4.2:32461137-32461156 | MS.gene74458:intron | 30.0% | |
| TGAATGTGAGTTAACTAACT+TGG | - | chr4.2:32459992-32460011 | MS.gene74458:intron | 30.0% | |
| ! | CTCTCTACTTGTTAAAAACA+AGG | + | chr4.2:32460175-32460194 | None:intergenic | 30.0% |
| ! | TCTTATGTTTAAAGAGGCAT+CGG | - | chr4.2:32460979-32460998 | MS.gene74458:intron | 30.0% |
| ! | TTTTCCTAAATTCAAAACCC+TGG | + | chr4.2:32459500-32459519 | None:intergenic | 30.0% |
| !! | ACAGTTCATATTTTGGGTAA+TGG | - | chr4.2:32461351-32461370 | MS.gene74458:intron | 30.0% |
| !! | AGATTCATATGGATTTTGAC+CGG | + | chr4.2:32461230-32461249 | None:intergenic | 30.0% |
| !! | CAGTTCATATTTTGGGTAAT+GGG | - | chr4.2:32461352-32461371 | MS.gene74458:intron | 30.0% |
| !!! | TTCATTTGGGTGTTGTTTTT+AGG | - | chr4.2:32459644-32459663 | MS.gene74458:intron | 30.0% |
| AAGAAAGAGGGATTACAGAT+TGG | + | chr4.2:32459379-32459398 | None:intergenic | 35.0% | |
| AGATATCTCAACTGTGGTTA+TGG | + | chr4.2:32460268-32460287 | None:intergenic | 35.0% | |
| AGATCGGGTAAAGATAAACA+CGG | + | chr4.2:32459430-32459449 | None:intergenic | 35.0% | |
| AGCTCATATATTGGGGAAAT+AGG | - | chr4.2:32459897-32459916 | MS.gene74458:intron | 35.0% | |
| AGGCAAATTCTTTCTAGGTA+CGG | - | chr4.2:32459750-32459769 | MS.gene74458:intron | 35.0% | |
| ATATGGGAAACCATATCCAA+CGG | + | chr4.2:32461092-32461111 | None:intergenic | 35.0% | |
| CAATGCAAAGTGAACTTGTA+TGG | - | chr4.2:32459696-32459715 | MS.gene74458:intron | 35.0% | |
| CGGTGACTGAAATTAACATA+TGG | + | chr4.2:32461281-32461300 | None:intergenic | 35.0% | |
| CTCTCAAGTCAAAGTTTACA+TGG | + | chr4.2:32460515-32460534 | None:intergenic | 35.0% | |
| GAATGCAAGCTAAATCATGT+TGG | - | chr4.2:32461395-32461414 | MS.gene74458:intron | 35.0% | |
| GCAAATCATCAAATCACATG+AGG | + | chr4.2:32461494-32461513 | None:intergenic | 35.0% | |
| GTAATTCCTTCTTCAATGCT+GGG | - | chr4.2:32461633-32461652 | MS.gene74458:CDS | 35.0% | |
| GTGAGTTAACTAACTTGGTA+TGG | - | chr4.2:32459997-32460016 | MS.gene74458:intron | 35.0% | |
| GTTGGGTACTAAGATTCATA+TGG | + | chr4.2:32461241-32461260 | None:intergenic | 35.0% | |
| TACTGAATGAGGAACTTGAA+AGG | - | chr4.2:32460031-32460050 | MS.gene74458:intron | 35.0% | |
| TCAATCGCAGCTCATATATT+GGG | - | chr4.2:32459889-32459908 | MS.gene74458:intron | 35.0% | |
| TTCAATCGCAGCTCATATAT+TGG | - | chr4.2:32459888-32459907 | MS.gene74458:intron | 35.0% | |
| TTGACAGGCAAATTCTTTCT+AGG | - | chr4.2:32459745-32459764 | MS.gene74458:intron | 35.0% | |
| TTTATTGCTAAGAGAGAGAG+TGG | - | chr4.2:32461549-32461568 | MS.gene74458:intron | 35.0% | |
| ! | CACTGTGAAATCTGAGATAT+AGG | + | chr4.2:32460386-32460405 | None:intergenic | 35.0% |
| ! | TTTGAGACTCACAAATTGAC+AGG | + | chr4.2:32460954-32460973 | None:intergenic | 35.0% |
| ! | TTTTGATGTTAGCGATTCCA+GGG | - | chr4.2:32459480-32459499 | MS.gene74458:intron | 35.0% |
| !! | ATTTTGATGTTAGCGATTCC+AGG | - | chr4.2:32459479-32459498 | MS.gene74458:intron | 35.0% |
| !! | CCAAATCAAAGAGCTTTAGA+AGG | - | chr4.2:32460677-32460696 | MS.gene74458:intron | 35.0% |
| !! | CCTTCTAAAGCTCTTTGATT+TGG | + | chr4.2:32460680-32460699 | None:intergenic | 35.0% |
| !! | TTTCAAGTTCCTCATTCAGT+AGG | + | chr4.2:32460032-32460051 | None:intergenic | 35.0% |
| !!! | ATTTTGGGTAATGGGAACAT+AGG | - | chr4.2:32461360-32461379 | MS.gene74458:intron | 35.0% |
| !!! | GATTCCAGGGTTTTGAATTT+AGG | - | chr4.2:32459493-32459512 | MS.gene74458:intron | 35.0% |
| !!! | TGGGTGTTGTTTTTAGGTAA+GGG | - | chr4.2:32459650-32459669 | MS.gene74458:intron | 35.0% |
| !!! | TTGGGTGTTGTTTTTAGGTA+AGG | - | chr4.2:32459649-32459668 | MS.gene74458:intron | 35.0% |
| AAACAGCATATGACCAAACC+CGG | + | chr4.2:32461301-32461320 | None:intergenic | 40.0% | |
| AACATATGGATGGTCTCTTG+TGG | + | chr4.2:32461267-32461286 | None:intergenic | 40.0% | |
| AAGACCATTGCACACCAAAT+CGG | - | chr4.2:32459269-32459288 | MS.gene74458:CDS | 40.0% | |
| ACAGGAACTCTTGATCACTT+TGG | - | chr4.2:32461669-32461688 | MS.gene74458:CDS | 40.0% | |
| ACATATGGATGGTCTCTTGT+GGG | + | chr4.2:32461266-32461285 | None:intergenic | 40.0% | |
| ACTTTCTGGGTACGAGTATT+TGG | - | chr4.2:32460059-32460078 | MS.gene74458:intron | 40.0% | |
| ATCTCAACTGTGGTTATGGA+AGG | + | chr4.2:32460264-32460283 | None:intergenic | 40.0% | |
| ATTGAAGAAGGAATTACCCC+TGG | + | chr4.2:32461630-32461649 | None:intergenic | 40.0% | |
| ATTGGAGAGATGATTCGAGA+GGG | + | chr4.2:32459361-32459380 | None:intergenic | 40.0% | |
| CAATCGCAGCTCATATATTG+GGG | - | chr4.2:32459890-32459909 | MS.gene74458:intron | 40.0% | |
| GGATGTAGATATCTCAACTG+TGG | + | chr4.2:32460274-32460293 | None:intergenic | 40.0% | |
| GGCAAATTCTTTCTAGGTAC+GGG | - | chr4.2:32459751-32459770 | MS.gene74458:intron | 40.0% | |
| GGTAATTCCTTCTTCAATGC+TGG | - | chr4.2:32461632-32461651 | MS.gene74458:CDS | 40.0% | |
| GTGTGGAAGAAGCTATGAAA+AGG | - | chr4.2:32459673-32459692 | MS.gene74458:intron | 40.0% | |
| GTTAACTAACAGCGCAATGT+TGG | - | chr4.2:32461457-32461476 | MS.gene74458:intron | 40.0% | |
| TGGGGAAATAGGACAAACAA+TGG | - | chr4.2:32459908-32459927 | MS.gene74458:intron | 40.0% | |
| TGTATTGTAGAAATTGGGGG+TGG | - | chr4.2:32460205-32460224 | MS.gene74458:intron | 40.0% | |
| TTAATTTCAGTCACCGGGTT+TGG | - | chr4.2:32461285-32461304 | MS.gene74458:intron | 40.0% | |
| !! | AGCTGTTTTCCTACTGAATG+AGG | - | chr4.2:32460020-32460039 | MS.gene74458:intron | 40.0% |
| !!! | GGGTGTTGTTTTTAGGTAAG+GGG | - | chr4.2:32459651-32459670 | MS.gene74458:intron | 40.0% |
| !!! | TTGTTTTTAGGTAAGGGGTG+TGG | - | chr4.2:32459656-32459675 | MS.gene74458:intron | 40.0% |
| AACGATGTCACTCTTGACAC+CGG | + | chr4.2:32459330-32459349 | None:intergenic | 45.0% | |
| AAGCAGTCGAGATGATTGTG+TGG | - | chr4.2:32460701-32460720 | MS.gene74458:intron | 45.0% | |
| AGAAATTGGGGGTGGATGAT+CGG | - | chr4.2:32460213-32460232 | MS.gene74458:intron | 45.0% | |
| CACACCGATGTTCTTCGTTT+CGG | - | chr4.2:32459299-32459318 | MS.gene74458:CDS | 45.0% | |
| CCAATCACATTCCAAACGGA+CGG | + | chr4.2:32460301-32460320 | None:intergenic | 45.0% | |
| CCGACCAATCACATTCCAAA+CGG | + | chr4.2:32460305-32460324 | None:intergenic | 45.0% | |
| CTGGAACCTACAAGGAACAA+TGG | + | chr4.2:32461601-32461620 | None:intergenic | 45.0% | |
| GAGTCCGAAACGAAGAACAT+CGG | + | chr4.2:32459306-32459325 | None:intergenic | 45.0% | |
| GATTGGAGAGATGATTCGAG+AGG | + | chr4.2:32459362-32459381 | None:intergenic | 45.0% | |
| GTGTTCGAATCACCATGCTT+AGG | - | chr4.2:32460606-32460625 | MS.gene74458:intron | 45.0% | |
| TCCTTCTTCAATGCTGGGTT+TGG | - | chr4.2:32461638-32461657 | MS.gene74458:CDS | 45.0% | |
| TGACTCAAGCTCAAGAGTAG+AGG | + | chr4.2:32460769-32460788 | None:intergenic | 45.0% | |
| TGCAATATGCCACCTAAGCA+TGG | + | chr4.2:32460621-32460640 | None:intergenic | 45.0% | |
| TTCGAATCACCATGCTTAGG+TGG | - | chr4.2:32460609-32460628 | MS.gene74458:intron | 45.0% | |
| TTGTTCCTTGTAGGTTCCAG+AGG | - | chr4.2:32461601-32461620 | MS.gene74458:CDS | 45.0% | |
| ! | ATGGTCTCTTGTGGGTTGTT+GGG | + | chr4.2:32461258-32461277 | None:intergenic | 45.0% |
| ! | CCGTTTGGAATGTGATTGGT+CGG | - | chr4.2:32460302-32460321 | MS.gene74458:intron | 45.0% |
| ! | CGTTTGGAATGTGATTGGTC+GGG | - | chr4.2:32460303-32460322 | MS.gene74458:intron | 45.0% |
| ! | TCCAAACCCAGCATTGAAGA+AGG | + | chr4.2:32461642-32461661 | None:intergenic | 45.0% |
| ACATTCCAAACGGACGGTGA+TGG | + | chr4.2:32460295-32460314 | None:intergenic | 50.0% | |
| ACCATTGCACACCAAATCGG+AGG | - | chr4.2:32459272-32459291 | MS.gene74458:CDS | 50.0% | |
| ACGATGTCACTCTTGACACC+GGG | + | chr4.2:32459329-32459348 | None:intergenic | 50.0% | |
| ACTAACAGCGCAATGTTGGC+TGG | - | chr4.2:32461461-32461480 | MS.gene74458:intron | 50.0% | |
| CACTCAAGGAGGAACTTGAC+AGG | - | chr4.2:32459730-32459749 | MS.gene74458:intron | 50.0% | |
| CAGAGTAAGAATAGCAGCGC+CGG | - | chr4.2:32461208-32461227 | MS.gene74458:CDS | 50.0% | |
| CGAAACGAAGAACATCGGTG+TGG | + | chr4.2:32459301-32459320 | None:intergenic | 50.0% | |
| CTGGGTTTGGAGACTGTTAC+AGG | - | chr4.2:32461651-32461670 | MS.gene74458:CDS | 50.0% | |
| CTGTCAAGTTCCTCCTTGAG+TGG | + | chr4.2:32459732-32459751 | None:intergenic | 50.0% | |
| GAAGAAGGAATTACCCCTGG+AGG | + | chr4.2:32461627-32461646 | None:intergenic | 50.0% | |
| GGTGTCAAGAGTGACATCGT+TGG | - | chr4.2:32459329-32459348 | MS.gene74458:CDS | 50.0% | |
| TACATCCATCACCGTCCGTT+TGG | - | chr4.2:32460287-32460306 | MS.gene74458:intron | 50.0% | |
| TCGAGATGATTGTGTGGCAG+TGG | - | chr4.2:32460707-32460726 | MS.gene74458:intron | 50.0% | |
| TGGATATGGTTGTCGCGCAT+CGG | - | chr4.2:32461157-32461176 | MS.gene74458:intron | 50.0% | |
| TGTGGCAGTGGCAAGTATTC+TGG | - | chr4.2:32460719-32460738 | MS.gene74458:intron | 50.0% | |
| ! | CCGTCCGTTTGGAATGTGAT+TGG | - | chr4.2:32460298-32460317 | MS.gene74458:intron | 50.0% |
| ! | GATGGTCTCTTGTGGGTTGT+TGG | + | chr4.2:32461259-32461278 | None:intergenic | 50.0% |
| !! | ACCTCCGATTTGGTGTGCAA+TGG | + | chr4.2:32459276-32459295 | None:intergenic | 50.0% |
| !! | TGTCGCGCATCGGTTGAATA+TGG | - | chr4.2:32461167-32461186 | MS.gene74458:intron | 50.0% |
| !!! | AGCTGCTTTTCCACTCAAGG+AGG | - | chr4.2:32459719-32459738 | MS.gene74458:intron | 50.0% |
| !!! | TGGAGCTGCTTTTCCACTCA+AGG | - | chr4.2:32459716-32459735 | MS.gene74458:intron | 50.0% |
| AGCAGCGCATCCGTTGGATA+TGG | - | chr4.2:32461079-32461098 | MS.gene74458:intron | 55.0% | |
| ATTGGGGGTGGATGATCGGT+TGG | - | chr4.2:32460217-32460236 | MS.gene74458:intron | 55.0% | |
| CAACGGATGCGCTGCTATTC+TGG | + | chr4.2:32461075-32461094 | None:intergenic | 55.0% | |
| CAGAATAGCAGCGCATCCGT+TGG | - | chr4.2:32461073-32461092 | MS.gene74458:intron | 55.0% | |
| CGATGTCACTCTTGACACCG+GGG | + | chr4.2:32459328-32459347 | None:intergenic | 55.0% | |
| GTTCTTCGTTTCGGACTCCC+CGG | - | chr4.2:32459308-32459327 | MS.gene74458:CDS | 55.0% | |
| ! | GAATGTGATTGGTCGGGTCG+TGG | - | chr4.2:32460309-32460328 | MS.gene74458:intron | 55.0% |
| ! | TGATTGGTCGGGTCGTGGAT+TGG | - | chr4.2:32460314-32460333 | MS.gene74458:intron | 55.0% |
| !! | CGTGGATTGGTTGGGCTTTC+AGG | - | chr4.2:32460327-32460346 | MS.gene74458:intron | 55.0% |
| CGGTGTGGACACCTCCGATT+TGG | + | chr4.2:32459286-32459305 | None:intergenic | 60.0% | |
| GAATTACCCCTGGAGGCCTC+TGG | + | chr4.2:32461620-32461639 | None:intergenic | 60.0% | |
| GTAGGTTCCAGAGGCCTCCA+GGG | - | chr4.2:32461610-32461629 | MS.gene74458:CDS | 60.0% | |
| TAGGTTCCAGAGGCCTCCAG+GGG | - | chr4.2:32461611-32461630 | MS.gene74458:CDS | 60.0% | |
| TGTAGGTTCCAGAGGCCTCC+AGG | - | chr4.2:32461609-32461628 | MS.gene74458:CDS | 60.0% | |
| ! | ACAGCGCAATGTTGGCTGGC+TGG | - | chr4.2:32461465-32461484 | MS.gene74458:intron | 60.0% |
| !! | GGAGGCCTCTGGAACCTACA+AGG | + | chr4.2:32461609-32461628 | None:intergenic | 60.0% |
| !! | GGTCGGGTCGTGGATTGGTT+GGG | - | chr4.2:32460319-32460338 | MS.gene74458:intron | 60.0% |
| !! | TGGTCGGGTCGTGGATTGGT+TGG | - | chr4.2:32460318-32460337 | MS.gene74458:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 32459254 | 32461711 | 32459254 | ID=MS.gene74458 |
| chr4.2 | mRNA | 32459254 | 32461711 | 32459254 | ID=MS.gene74458.t1;Parent=MS.gene74458 |
| chr4.2 | exon | 32461583 | 32461711 | 32461583 | ID=MS.gene74458.t1.exon1;Parent=MS.gene74458.t1 |
| chr4.2 | CDS | 32461583 | 32461711 | 32461583 | ID=cds.MS.gene74458.t1;Parent=MS.gene74458.t1 |
| chr4.2 | exon | 32461199 | 32461299 | 32461199 | ID=MS.gene74458.t1.exon2;Parent=MS.gene74458.t1 |
| chr4.2 | CDS | 32461199 | 32461299 | 32461199 | ID=cds.MS.gene74458.t1;Parent=MS.gene74458.t1 |
| chr4.2 | exon | 32459254 | 32459351 | 32459254 | ID=MS.gene74458.t1.exon3;Parent=MS.gene74458.t1 |
| chr4.2 | CDS | 32459254 | 32459351 | 32459254 | ID=cds.MS.gene74458.t1;Parent=MS.gene74458.t1 |
| Gene Sequence |
| Protein sequence |
