Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006522.t1 | XP_013456604.1 | 98.2 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 4.30E-54 | 220.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006522.t1 | Q0DWQ7 | 50.5 | 103 | 49 | 2 | 8 | 109 | 7 | 108 | 1.4e-21 | 103.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006522.t1 | I3RZJ2 | 98.2 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 3.1e-54 | 220.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006522 | MS.gene006524 | PPI |
| MS.gene006522 | MS.gene052354 | PPI |
| MS.gene74458 | MS.gene006522 | PPI |
| MS.gene006522 | MS.gene001456 | PPI |
| MS.gene006522 | MS.gene006520 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006522.t1 | MTR_4g077240 | 98.165 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 1.12e-75 | 220 |
| MS.gene006522.t1 | MTR_5g008020 | 67.708 | 96 | 31 | 0 | 1 | 96 | 1 | 96 | 1.82e-43 | 137 |
| MS.gene006522.t1 | MTR_5g008020 | 61.111 | 108 | 39 | 1 | 1 | 105 | 1 | 108 | 8.48e-40 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006522.t1 | AT1G67250 | 65.421 | 107 | 37 | 0 | 3 | 109 | 2 | 108 | 5.84e-47 | 147 |
| MS.gene006522.t1 | AT5G38650 | 65.421 | 107 | 37 | 0 | 3 | 109 | 2 | 108 | 1.42e-46 | 146 |
| MS.gene006522.t1 | AT5G38660 | 65.421 | 107 | 37 | 0 | 3 | 109 | 292 | 398 | 2.07e-43 | 146 |
Find 32 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACAGGCAAATTCTTTCT+AGG | 0.239502 | 4.2:-32449935 | MS.gene006522:intron |
| CTGGGTTTGGAGACTGTTAC+AGG | 0.300396 | 4.2:-32448027 | MS.gene006522:CDS |
| TCCTTCTTCAATGCTGGGTT+TGG | 0.302948 | 4.2:-32448040 | MS.gene006522:CDS |
| GGTAATTCCTTCTTCAATGC+TGG | 0.336438 | 4.2:-32448046 | MS.gene006522:CDS |
| CACACCGATGTTCTTCGTTT+CGG | 0.369713 | 4.2:-32450381 | MS.gene006522:CDS |
| TGTAGGTTCCAGAGGCCTCC+AGG | 0.394850 | 4.2:-32448069 | MS.gene006522:intron |
| CGGTGTGGACACCTCCGATT+TGG | 0.398903 | 4.2:+32450397 | None:intergenic |
| GTAATTCCTTCTTCAATGCT+GGG | 0.431838 | 4.2:-32448045 | MS.gene006522:CDS |
| GAATTACCCCTGGAGGCCTC+TGG | 0.462918 | 4.2:+32448061 | None:intergenic |
| CAATGCAAAGTGAACTTGTA+TGG | 0.463197 | 4.2:-32449984 | MS.gene006522:CDS |
| AAGACCATTGCACACCAAAT+CGG | 0.493784 | 4.2:-32450411 | MS.gene006522:CDS |
| GTTCTTCGTTTCGGACTCCC+CGG | 0.510103 | 4.2:-32450372 | MS.gene006522:CDS |
| ACAGGAACTCTTGATCACTT+TGG | 0.516207 | 4.2:-32448009 | MS.gene006522:CDS |
| GTAGGTTCCAGAGGCCTCCA+GGG | 0.520667 | 4.2:-32448068 | MS.gene006522:intron |
| TTGTTCCTTGTAGGTTCCAG+AGG | 0.530160 | 4.2:-32448077 | MS.gene006522:intron |
| CACTCAAGGAGGAACTTGAC+AGG | 0.531487 | 4.2:-32449950 | MS.gene006522:CDS |
| TCCAAACCCAGCATTGAAGA+AGG | 0.541603 | 4.2:+32448039 | None:intergenic |
| GTGTGGAAGAAGCTATGAAA+AGG | 0.569616 | 4.2:-32450007 | MS.gene006522:CDS |
| CTGTCAAGTTCCTCCTTGAG+TGG | 0.571910 | 4.2:+32449951 | None:intergenic |
| AACGATGTCACTCTTGACAC+CGG | 0.575887 | 4.2:+32450353 | None:intergenic |
| ACCTCCGATTTGGTGTGCAA+TGG | 0.590824 | 4.2:+32450407 | None:intergenic |
| ACGATGTCACTCTTGACACC+GGG | 0.595518 | 4.2:+32450354 | None:intergenic |
| ATTGAAGAAGGAATTACCCC+TGG | 0.637004 | 4.2:+32448051 | None:intergenic |
| GGTGTCAAGAGTGACATCGT+TGG | 0.652058 | 4.2:-32450351 | MS.gene006522:CDS |
| ATTGGAGAGATGATTCGAGA+GGG | 0.655080 | 4.2:+32450322 | None:intergenic |
| TAGGTTCCAGAGGCCTCCAG+GGG | 0.666008 | 4.2:-32448067 | MS.gene006522:CDS |
| ACCATTGCACACCAAATCGG+AGG | 0.670349 | 4.2:-32450408 | MS.gene006522:CDS |
| GATTGGAGAGATGATTCGAG+AGG | 0.680344 | 4.2:+32450321 | None:intergenic |
| GAGTCCGAAACGAAGAACAT+CGG | 0.687032 | 4.2:+32450377 | None:intergenic |
| GAAGAAGGAATTACCCCTGG+AGG | 0.721691 | 4.2:+32448054 | None:intergenic |
| CGAAACGAAGAACATCGGTG+TGG | 0.742333 | 4.2:+32450382 | None:intergenic |
| CGATGTCACTCTTGACACCG+GGG | 0.751960 | 4.2:+32450355 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAGGAAAAAAAAAATA+GGG | - | chr4.2:32448243-32448262 | MS.gene006522:intron | 10.0% |
| !!! | TTGTTTTTTATTTTAAAGTT+TGG | - | chr4.2:32448330-32448349 | MS.gene006522:intron | 10.0% |
| !!! | TTTAATTTATCTATTTTTCA+AGG | - | chr4.2:32448518-32448537 | MS.gene006522:intron | 10.0% |
| !! | AAAATTTGTATTGTAGAAAT+TGG | - | chr4.2:32448934-32448953 | MS.gene006522:intron | 15.0% |
| !! | AAATTTGTATTGTAGAAATT+GGG | - | chr4.2:32448935-32448954 | MS.gene006522:intron | 15.0% |
| !! | GAATTTAGGAAAAAAAAAAT+AGG | - | chr4.2:32448242-32448261 | MS.gene006522:intron | 15.0% |
| !! | TCAAATATAAAAGAAAGAAA+TGG | - | chr4.2:32449523-32449542 | MS.gene006522:intron | 15.0% |
| !!! | CTAAGAGTATTTTTTTTTTT+TGG | - | chr4.2:32449757-32449776 | MS.gene006522:intron | 15.0% |
| !!! | TTTTTTTTTTTGGAAAGAAT+AGG | - | chr4.2:32449767-32449786 | MS.gene006522:intron | 15.0% |
| !! | AAAAAAAAAATACTCTTAGC+AGG | + | chr4.2:32449756-32449775 | None:intergenic | 20.0% |
| !! | AAAAAAAAATACTCTTAGCA+GGG | + | chr4.2:32449755-32449774 | None:intergenic | 20.0% |
| !! | AATTTATTACTACATGCATT+GGG | + | chr4.2:32449602-32449621 | None:intergenic | 20.0% |
| !! | AATTTGTATTGTAGAAATTG+GGG | - | chr4.2:32448936-32448955 | MS.gene006522:intron | 20.0% |
| !! | CACTATTAAAAAGATAAACT+CGG | - | chr4.2:32449211-32449230 | MS.gene006522:intron | 20.0% |
| !! | GTTATATGATCTAATTGAAT+AGG | - | chr4.2:32448303-32448322 | MS.gene006522:intron | 20.0% |
| !! | TGAAAAAACAACAATTAGAT+CGG | + | chr4.2:32448181-32448200 | None:intergenic | 20.0% |
| !! | TTACTCTGTTATTAACATAT+GGG | + | chr4.2:32449933-32449952 | None:intergenic | 20.0% |
| !!! | AGTATCTGAAATTAACATAT+GGG | + | chr4.2:32449845-32449864 | None:intergenic | 20.0% |
| !!! | TAGTATCTGAAATTAACATA+TGG | + | chr4.2:32449846-32449865 | None:intergenic | 20.0% |
| ! | ACAAATAAATTAACGTGCTA+TGG | - | chr4.2:32449623-32449642 | MS.gene006522:intron | 25.0% |
| ! | AGCAAATCTTATGTTTAAAG+AGG | - | chr4.2:32449710-32449729 | MS.gene006522:intron | 25.0% |
| ! | ATTTGTATTGTAGAAATTGG+GGG | - | chr4.2:32448937-32448956 | MS.gene006522:intron | 25.0% |
| ! | CAATTTATTACTACATGCAT+TGG | + | chr4.2:32449603-32449622 | None:intergenic | 25.0% |
| ! | CTTACTCTGTTATTAACATA+TGG | + | chr4.2:32449934-32449953 | None:intergenic | 25.0% |
| ! | GAAAAAACAACAATTAGATC+GGG | + | chr4.2:32448180-32448199 | None:intergenic | 25.0% |
| ! | TTGAAAGGAAAATACTTTCT+GGG | - | chr4.2:32448781-32448800 | MS.gene006522:intron | 25.0% |
| !! | TCATTCACAGTTCATATTTT+GGG | - | chr4.2:32450082-32450101 | MS.gene006522:intron | 25.0% |
| !! | TTCATTCACAGTTCATATTT+TGG | - | chr4.2:32450081-32450100 | MS.gene006522:intron | 25.0% |
| !!! | ATGTGTGTTTGTTTTCATTT+GGG | - | chr4.2:32448366-32448385 | MS.gene006522:intron | 25.0% |
| !!! | TATGTGTGTTTGTTTTCATT+TGG | - | chr4.2:32448365-32448384 | MS.gene006522:intron | 25.0% |
| AAACACGGAAAGATTAAAAC+AGG | + | chr4.2:32448150-32448169 | None:intergenic | 30.0% | |
| AAACTGAAACAGAAAGAAAG+AGG | + | chr4.2:32448127-32448146 | None:intergenic | 30.0% | |
| AACTGAAACAGAAAGAAAGA+GGG | + | chr4.2:32448126-32448145 | None:intergenic | 30.0% | |
| AATGAAATTTCTACTAGGAG+TGG | + | chr4.2:32450067-32450086 | None:intergenic | 30.0% | |
| ACTCACTACTAATACAAACA+AGG | + | chr4.2:32448580-32448599 | None:intergenic | 30.0% | |
| AGTGAGTGTTTGAATTTGTA+TGG | - | chr4.2:32448593-32448612 | MS.gene006522:intron | 30.0% | |
| AGTGTTTGAATTTGTATGGT+AGG | - | chr4.2:32448597-32448616 | MS.gene006522:intron | 30.0% | |
| ATATGTTAATTTCAGTCACC+GGG | - | chr4.2:32450017-32450036 | MS.gene006522:CDS | 30.0% | |
| ATATTACCATTGTTCCTTGT+AGG | - | chr4.2:32450329-32450348 | MS.gene006522:CDS | 30.0% | |
| CATATGTTAATTTCAGTCAC+CGG | - | chr4.2:32450016-32450035 | MS.gene006522:CDS | 30.0% | |
| CCATATCCATATGAAAGAAT+AGG | + | chr4.2:32449883-32449902 | None:intergenic | 30.0% | |
| CCTATTCTTTCATATGGATA+TGG | - | chr4.2:32449880-32449899 | MS.gene006522:intron | 30.0% | |
| CGAACACATTTCTTCATAAT+CGG | + | chr4.2:32449330-32449349 | None:intergenic | 30.0% | |
| CTGTGAATGAAATTTCTACT+AGG | + | chr4.2:32450072-32450091 | None:intergenic | 30.0% | |
| CTTGAAAGGAAAATACTTTC+TGG | - | chr4.2:32448780-32448799 | MS.gene006522:intron | 30.0% | |
| GACTGAAATTAACATATGGA+TGG | + | chr4.2:32450014-32450033 | None:intergenic | 30.0% | |
| TACAAGGAACAATGGTAATA+TGG | + | chr4.2:32450330-32450349 | None:intergenic | 30.0% | |
| TCAGATCCTATTCTTTCATA+TGG | - | chr4.2:32449874-32449893 | MS.gene006522:intron | 30.0% | |
| TGAATGTGAGTTAACTAACT+TGG | - | chr4.2:32448727-32448746 | MS.gene006522:intron | 30.0% | |
| ! | CTCTCTACTTGTTAAAAACA+AGG | + | chr4.2:32448910-32448929 | None:intergenic | 30.0% |
| ! | TCTTATGTTTAAAGAGGCAT+CGG | - | chr4.2:32449716-32449735 | MS.gene006522:intron | 30.0% |
| ! | TTTTCCTAAATTCAAAACCC+TGG | + | chr4.2:32448235-32448254 | None:intergenic | 30.0% |
| !! | ACAGTTCATATTTTGGGTAA+TGG | - | chr4.2:32450088-32450107 | MS.gene006522:intron | 30.0% |
| !! | AGATTCATATGGATTTTGAC+CGG | + | chr4.2:32449967-32449986 | None:intergenic | 30.0% |
| !! | CAGTTCATATTTTGGGTAAT+GGG | - | chr4.2:32450089-32450108 | MS.gene006522:intron | 30.0% |
| !!! | TTCATTTGGGTGTTGTTTTT+AGG | - | chr4.2:32448379-32448398 | MS.gene006522:intron | 30.0% |
| AAGAAAGAGGGATTACAGAT+TGG | + | chr4.2:32448114-32448133 | None:intergenic | 35.0% | |
| AGATATCTCAACTGTGGTTA+TGG | + | chr4.2:32449003-32449022 | None:intergenic | 35.0% | |
| AGATCGGGTAAAGATAAACA+CGG | + | chr4.2:32448165-32448184 | None:intergenic | 35.0% | |
| AGCTCATATATTGGGGAAAT+AGG | - | chr4.2:32448632-32448651 | MS.gene006522:intron | 35.0% | |
| AGGCAAATTCTTTCTAGGTA+CGG | - | chr4.2:32448485-32448504 | MS.gene006522:intron | 35.0% | |
| ATATGGGAAACCATATCCAA+CGG | + | chr4.2:32449829-32449848 | None:intergenic | 35.0% | |
| CAATGCAAAGTGAACTTGTA+TGG | - | chr4.2:32448431-32448450 | MS.gene006522:intron | 35.0% | |
| CGGTGACTGAAATTAACATA+TGG | + | chr4.2:32450018-32450037 | None:intergenic | 35.0% | |
| CTCTCAAGTCAAAGTTTACA+TGG | + | chr4.2:32449252-32449271 | None:intergenic | 35.0% | |
| GAATGCAAGCTAAATCATGT+TGG | - | chr4.2:32450132-32450151 | MS.gene006522:intron | 35.0% | |
| GCAAATCATCAAATCACATG+AGG | + | chr4.2:32450231-32450250 | None:intergenic | 35.0% | |
| GTAATTCCTTCTTCAATGCT+GGG | - | chr4.2:32450370-32450389 | MS.gene006522:CDS | 35.0% | |
| GTGAGTTAACTAACTTGGTA+TGG | - | chr4.2:32448732-32448751 | MS.gene006522:intron | 35.0% | |
| GTTGGGTACTAAGATTCATA+TGG | + | chr4.2:32449978-32449997 | None:intergenic | 35.0% | |
| TACTGAATGAGGAACTTGAA+AGG | - | chr4.2:32448766-32448785 | MS.gene006522:intron | 35.0% | |
| TCAATCGCAGCTCATATATT+GGG | - | chr4.2:32448624-32448643 | MS.gene006522:intron | 35.0% | |
| TTCAATCGCAGCTCATATAT+TGG | - | chr4.2:32448623-32448642 | MS.gene006522:intron | 35.0% | |
| TTGACAGGCAAATTCTTTCT+AGG | - | chr4.2:32448480-32448499 | MS.gene006522:intron | 35.0% | |
| TTTATTGCTAAGAGAGAGAG+TGG | - | chr4.2:32450286-32450305 | MS.gene006522:intron | 35.0% | |
| ! | CACTGTGAAATCTGAGATAT+AGG | + | chr4.2:32449122-32449141 | None:intergenic | 35.0% |
| ! | TTTGAGACTCACAAATTGAC+AGG | + | chr4.2:32449691-32449710 | None:intergenic | 35.0% |
| ! | TTTTGATGTTAGCGATTCCA+GGG | - | chr4.2:32448215-32448234 | MS.gene006522:intron | 35.0% |
| !! | ATTTTGATGTTAGCGATTCC+AGG | - | chr4.2:32448214-32448233 | MS.gene006522:intron | 35.0% |
| !! | CCAAATCAAAGAGCTTTAGA+AGG | - | chr4.2:32449414-32449433 | MS.gene006522:intron | 35.0% |
| !! | CCTTCTAAAGCTCTTTGATT+TGG | + | chr4.2:32449417-32449436 | None:intergenic | 35.0% |
| !! | TTTCAAGTTCCTCATTCAGT+AGG | + | chr4.2:32448767-32448786 | None:intergenic | 35.0% |
| !!! | ATTTTGGGTAATGGGAACAT+AGG | - | chr4.2:32450097-32450116 | MS.gene006522:intron | 35.0% |
| !!! | GATTCCAGGGTTTTGAATTT+AGG | - | chr4.2:32448228-32448247 | MS.gene006522:intron | 35.0% |
| !!! | TGGGTGTTGTTTTTAGGTAA+GGG | - | chr4.2:32448385-32448404 | MS.gene006522:intron | 35.0% |
| !!! | TTGGGTGTTGTTTTTAGGTA+AGG | - | chr4.2:32448384-32448403 | MS.gene006522:intron | 35.0% |
| AAACAGCATATGACCAAACC+CGG | + | chr4.2:32450038-32450057 | None:intergenic | 40.0% | |
| AACATATGGATGGTCTCTTG+TGG | + | chr4.2:32450004-32450023 | None:intergenic | 40.0% | |
| AAGACCATTGCACACCAAAT+CGG | - | chr4.2:32448004-32448023 | MS.gene006522:CDS | 40.0% | |
| ACAGGAACTCTTGATCACTT+TGG | - | chr4.2:32450406-32450425 | MS.gene006522:CDS | 40.0% | |
| ACATATGGATGGTCTCTTGT+GGG | + | chr4.2:32450003-32450022 | None:intergenic | 40.0% | |
| ACTTTCTGGGTACGAGTATT+TGG | - | chr4.2:32448794-32448813 | MS.gene006522:intron | 40.0% | |
| ATCTCAACTGTGGTTATGGA+AGG | + | chr4.2:32448999-32449018 | None:intergenic | 40.0% | |
| ATTGAAGAAGGAATTACCCC+TGG | + | chr4.2:32450367-32450386 | None:intergenic | 40.0% | |
| ATTGGAGAGATGATTCGAGA+GGG | + | chr4.2:32448096-32448115 | None:intergenic | 40.0% | |
| CAATCGCAGCTCATATATTG+GGG | - | chr4.2:32448625-32448644 | MS.gene006522:intron | 40.0% | |
| GGATGTAGATATCTCAACTG+TGG | + | chr4.2:32449009-32449028 | None:intergenic | 40.0% | |
| GGCAAATTCTTTCTAGGTAC+GGG | - | chr4.2:32448486-32448505 | MS.gene006522:intron | 40.0% | |
| GGTAATTCCTTCTTCAATGC+TGG | - | chr4.2:32450369-32450388 | MS.gene006522:CDS | 40.0% | |
| GTGTGGAAGAAGCTATGAAA+AGG | - | chr4.2:32448408-32448427 | MS.gene006522:intron | 40.0% | |
| GTTAACTAACAGCGCAATGT+TGG | - | chr4.2:32450194-32450213 | MS.gene006522:intron | 40.0% | |
| TGGGGAAATAGGACAAACAA+TGG | - | chr4.2:32448643-32448662 | MS.gene006522:intron | 40.0% | |
| TGTATTGTAGAAATTGGGGG+TGG | - | chr4.2:32448940-32448959 | MS.gene006522:intron | 40.0% | |
| TTAATTTCAGTCACCGGGTT+TGG | - | chr4.2:32450022-32450041 | MS.gene006522:intron | 40.0% | |
| !! | AGCTGTTTTCCTACTGAATG+AGG | - | chr4.2:32448755-32448774 | MS.gene006522:intron | 40.0% |
| !!! | GGGTGTTGTTTTTAGGTAAG+GGG | - | chr4.2:32448386-32448405 | MS.gene006522:intron | 40.0% |
| !!! | TTGTTTTTAGGTAAGGGGTG+TGG | - | chr4.2:32448391-32448410 | MS.gene006522:intron | 40.0% |
| AACGATGTCACTCTTGACAC+CGG | + | chr4.2:32448065-32448084 | None:intergenic | 45.0% | |
| AAGCAGTCGAGATGATTGTG+TGG | - | chr4.2:32449438-32449457 | MS.gene006522:intron | 45.0% | |
| AGAAATTGGGGGTGGATGAT+CGG | - | chr4.2:32448948-32448967 | MS.gene006522:intron | 45.0% | |
| CAATCCACATTCCAAACGGA+CGG | + | chr4.2:32449036-32449055 | None:intergenic | 45.0% | |
| CACACCGATGTTCTTCGTTT+CGG | - | chr4.2:32448034-32448053 | MS.gene006522:CDS | 45.0% | |
| CGACCAATCCACATTCCAAA+CGG | + | chr4.2:32449040-32449059 | None:intergenic | 45.0% | |
| CTGGAACCTACAAGGAACAA+TGG | + | chr4.2:32450338-32450357 | None:intergenic | 45.0% | |
| GAGTCCGAAACGAAGAACAT+CGG | + | chr4.2:32448041-32448060 | None:intergenic | 45.0% | |
| GATTGGAGAGATGATTCGAG+AGG | + | chr4.2:32448097-32448116 | None:intergenic | 45.0% | |
| GTGTTCGAATCACCATGCTT+AGG | - | chr4.2:32449343-32449362 | MS.gene006522:intron | 45.0% | |
| TCCTTCTTCAATGCTGGGTT+TGG | - | chr4.2:32450375-32450394 | MS.gene006522:CDS | 45.0% | |
| TGACTCAAGCTCAAGAGTAG+AGG | + | chr4.2:32449506-32449525 | None:intergenic | 45.0% | |
| TGCAATATGCCACCTAAGCA+TGG | + | chr4.2:32449358-32449377 | None:intergenic | 45.0% | |
| TTCGAATCACCATGCTTAGG+TGG | - | chr4.2:32449346-32449365 | MS.gene006522:intron | 45.0% | |
| TTGTTCCTTGTAGGTTCCAG+AGG | - | chr4.2:32450338-32450357 | MS.gene006522:CDS | 45.0% | |
| ! | ATGGTCTCTTGTGGGTTGTT+GGG | + | chr4.2:32449995-32450014 | None:intergenic | 45.0% |
| ! | TCCAAACCCAGCATTGAAGA+AGG | + | chr4.2:32450379-32450398 | None:intergenic | 45.0% |
| !! | CGTTTGGAATGTGGATTGGT+CGG | - | chr4.2:32449038-32449057 | MS.gene006522:intron | 45.0% |
| !! | GTTTGGAATGTGGATTGGTC+GGG | - | chr4.2:32449039-32449058 | MS.gene006522:intron | 45.0% |
| ACATTCCAAACGGACGGTGA+TGG | + | chr4.2:32449030-32449049 | None:intergenic | 50.0% | |
| ACCATTGCACACCAAATCGG+AGG | - | chr4.2:32448007-32448026 | MS.gene006522:CDS | 50.0% | |
| ACGATGTCACTCTTGACACC+GGG | + | chr4.2:32448064-32448083 | None:intergenic | 50.0% | |
| ACTAACAGCGCAATGTTGGC+TGG | - | chr4.2:32450198-32450217 | MS.gene006522:intron | 50.0% | |
| CACTCAAGGAGGAACTTGAC+AGG | - | chr4.2:32448465-32448484 | MS.gene006522:intron | 50.0% | |
| CAGAGTAAGAATAGCAGCGC+CGG | - | chr4.2:32449945-32449964 | MS.gene006522:CDS | 50.0% | |
| CGAAACGAAGAACATCGGTG+TGG | + | chr4.2:32448036-32448055 | None:intergenic | 50.0% | |
| CTGGGTTTGGAGACTGTTAC+AGG | - | chr4.2:32450388-32450407 | MS.gene006522:CDS | 50.0% | |
| CTGTCAAGTTCCTCCTTGAG+TGG | + | chr4.2:32448467-32448486 | None:intergenic | 50.0% | |
| GAAGAAGGAATTACCCCTGG+AGG | + | chr4.2:32450364-32450383 | None:intergenic | 50.0% | |
| GGTGTCAAGAGTGACATCGT+TGG | - | chr4.2:32448064-32448083 | MS.gene006522:CDS | 50.0% | |
| TACATCCATCACCGTCCGTT+TGG | - | chr4.2:32449022-32449041 | MS.gene006522:intron | 50.0% | |
| TCGAGATGATTGTGTGGCAG+TGG | - | chr4.2:32449444-32449463 | MS.gene006522:intron | 50.0% | |
| TGGATATGGTTGTCGCGCAT+CGG | - | chr4.2:32449894-32449913 | MS.gene006522:intron | 50.0% | |
| TGTGGCAGTGGCAAGTATTC+TGG | - | chr4.2:32449456-32449475 | MS.gene006522:intron | 50.0% | |
| ! | ATCACCGTCCGTTTGGAATG+TGG | - | chr4.2:32449029-32449048 | MS.gene006522:intron | 50.0% |
| ! | CGTCCGTTTGGAATGTGGAT+TGG | - | chr4.2:32449034-32449053 | MS.gene006522:intron | 50.0% |
| ! | GATGGTCTCTTGTGGGTTGT+TGG | + | chr4.2:32449996-32450015 | None:intergenic | 50.0% |
| !! | ACCTCCGATTTGGTGTGCAA+TGG | + | chr4.2:32448011-32448030 | None:intergenic | 50.0% |
| !! | TGTCGCGCATCGGTTGAATA+TGG | - | chr4.2:32449904-32449923 | MS.gene006522:intron | 50.0% |
| !!! | AGCTGCTTTTCCACTCAAGG+AGG | - | chr4.2:32448454-32448473 | MS.gene006522:intron | 50.0% |
| !!! | TGGAGCTGCTTTTCCACTCA+AGG | - | chr4.2:32448451-32448470 | MS.gene006522:intron | 50.0% |
| AGCAGCGCATCCGTTGGATA+TGG | - | chr4.2:32449816-32449835 | MS.gene006522:intron | 55.0% | |
| ATTGGGGGTGGATGATCGGT+TGG | - | chr4.2:32448952-32448971 | MS.gene006522:intron | 55.0% | |
| CAACGGATGCGCTGCTATTC+TGG | + | chr4.2:32449812-32449831 | None:intergenic | 55.0% | |
| CAGAATAGCAGCGCATCCGT+TGG | - | chr4.2:32449810-32449829 | MS.gene006522:intron | 55.0% | |
| CGATGTCACTCTTGACACCG+GGG | + | chr4.2:32448063-32448082 | None:intergenic | 55.0% | |
| GTTCTTCGTTTCGGACTCCC+CGG | - | chr4.2:32448043-32448062 | MS.gene006522:CDS | 55.0% | |
| !! | AATGTGGATTGGTCGGGTCG+TGG | - | chr4.2:32449045-32449064 | MS.gene006522:intron | 55.0% |
| !! | CGTGGATTGGTTGGGCTTTC+AGG | - | chr4.2:32449063-32449082 | MS.gene006522:intron | 55.0% |
| CGGTGTGGACACCTCCGATT+TGG | + | chr4.2:32448021-32448040 | None:intergenic | 60.0% | |
| GAATTACCCCTGGAGGCCTC+TGG | + | chr4.2:32450357-32450376 | None:intergenic | 60.0% | |
| GTAGGTTCCAGAGGCCTCCA+GGG | - | chr4.2:32450347-32450366 | MS.gene006522:CDS | 60.0% | |
| TAGGTTCCAGAGGCCTCCAG+GGG | - | chr4.2:32450348-32450367 | MS.gene006522:CDS | 60.0% | |
| TGTAGGTTCCAGAGGCCTCC+AGG | - | chr4.2:32450346-32450365 | MS.gene006522:CDS | 60.0% | |
| ! | ACAGCGCAATGTTGGCTGGC+TGG | - | chr4.2:32450202-32450221 | MS.gene006522:intron | 60.0% |
| !! | GGAGGCCTCTGGAACCTACA+AGG | + | chr4.2:32450346-32450365 | None:intergenic | 60.0% |
| !! | GGATTGGTCGGGTCGTGGAT+TGG | - | chr4.2:32449050-32449069 | MS.gene006522:intron | 60.0% |
| !! | GGTCGGGTCGTGGATTGGTT+GGG | - | chr4.2:32449055-32449074 | MS.gene006522:intron | 60.0% |
| !! | TGGTCGGGTCGTGGATTGGT+TGG | - | chr4.2:32449054-32449073 | MS.gene006522:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 32447989 | 32450448 | 32447989 | ID=MS.gene006522 |
| chr4.2 | mRNA | 32447989 | 32450448 | 32447989 | ID=MS.gene006522.t1;Parent=MS.gene006522 |
| chr4.2 | exon | 32450320 | 32450448 | 32450320 | ID=MS.gene006522.t1.exon1;Parent=MS.gene006522.t1 |
| chr4.2 | CDS | 32450320 | 32450448 | 32450320 | ID=cds.MS.gene006522.t1;Parent=MS.gene006522.t1 |
| chr4.2 | exon | 32449936 | 32450036 | 32449936 | ID=MS.gene006522.t1.exon2;Parent=MS.gene006522.t1 |
| chr4.2 | CDS | 32449936 | 32450036 | 32449936 | ID=cds.MS.gene006522.t1;Parent=MS.gene006522.t1 |
| chr4.2 | exon | 32447989 | 32448086 | 32447989 | ID=MS.gene006522.t1.exon3;Parent=MS.gene006522.t1 |
| chr4.2 | CDS | 32447989 | 32448086 | 32447989 | ID=cds.MS.gene006522.t1;Parent=MS.gene006522.t1 |
| Gene Sequence |
| Protein sequence |
