Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006524.t1 | XP_013456604.1 | 96.5 | 141 | 5 | 0 | 1 | 141 | 1 | 141 | 7.20E-73 | 283.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006524.t1 | Q0DWQ7 | 49.5 | 109 | 53 | 2 | 8 | 115 | 7 | 114 | 1.1e-21 | 104.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006524.t1 | I3RZJ2 | 96.5 | 141 | 5 | 0 | 1 | 141 | 1 | 141 | 5.2e-73 | 283.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006522 | MS.gene006524 | PPI |
| MS.gene052354 | MS.gene006524 | PPI |
| MS.gene74458 | MS.gene006524 | PPI |
| MS.gene006524 | MS.gene006520 | PPI |
| MS.gene006524 | MS.gene001456 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006524.t1 | MTR_4g077240 | 96.454 | 141 | 5 | 0 | 1 | 141 | 1 | 141 | 3.83e-98 | 280 |
| MS.gene006524.t1 | MTR_5g008020 | 61.871 | 139 | 34 | 1 | 1 | 139 | 1 | 120 | 1.99e-54 | 169 |
| MS.gene006524.t1 | MTR_5g008020 | 67.708 | 96 | 31 | 0 | 1 | 96 | 1 | 96 | 4.18e-42 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006524.t1 | AT1G67250 | 67.626 | 139 | 45 | 0 | 3 | 141 | 2 | 140 | 8.14e-68 | 204 |
| MS.gene006524.t1 | AT5G38650 | 68.613 | 137 | 43 | 0 | 3 | 139 | 2 | 138 | 1.59e-65 | 198 |
| MS.gene006524.t1 | AT5G38660 | 68.613 | 137 | 43 | 0 | 3 | 139 | 292 | 428 | 2.86e-62 | 199 |
Find 58 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGTTCATTAGAATTAA+AGG | 0.210110 | 4.2:-32404017 | MS.gene006524:intron |
| TTGACAGGCAAATTCTTTCT+AGG | 0.239502 | 4.2:-32407340 | MS.gene006524:intron |
| CACAAGTGTGCAATTAAATA+TGG | 0.290293 | 4.2:+32403943 | None:intergenic |
| CTGGGTTTGGAGACTGTTAC+AGG | 0.300396 | 4.2:-32405432 | MS.gene006524:CDS |
| TCCTTCTTCAATGCTGGGTT+TGG | 0.302948 | 4.2:-32405445 | MS.gene006524:CDS |
| AGTTCGCCTTGGTCTATCTA+AGG | 0.328350 | 4.2:-32404119 | MS.gene006524:CDS |
| GGTAATTCCTTCTTCAATGC+TGG | 0.336438 | 4.2:-32405451 | MS.gene006524:CDS |
| CACAAGTGTGCAATTAAATA+TGG | 0.358707 | 4.2:+32403985 | None:intergenic |
| CACACCGATGTTCTTCGTTT+CGG | 0.369713 | 4.2:-32407786 | MS.gene006524:CDS |
| TCGGATGCTATAAATGTTAC+GGG | 0.381859 | 4.2:-32403908 | MS.gene006524:CDS |
| TGTAGGTTCCAGAGGCCTCC+AGG | 0.394850 | 4.2:-32405474 | MS.gene006524:intron |
| CGGTGTGGACACCTCCGATT+TGG | 0.398903 | 4.2:+32407802 | None:intergenic |
| TGTTGTTCATTAGAATTAAA+GGG | 0.410309 | 4.2:-32404016 | MS.gene006524:intron |
| ACTTGTGTTTGCCTATGTTT+CGG | 0.421748 | 4.2:-32403927 | MS.gene006524:CDS |
| ACTTGTGTTTGCCTATGTTT+CGG | 0.421748 | 4.2:-32403969 | MS.gene006524:CDS |
| TTCGGATGCTATAAATGTTA+CGG | 0.422233 | 4.2:-32403909 | MS.gene006524:CDS |
| GTAATTCCTTCTTCAATGCT+GGG | 0.431838 | 4.2:-32405450 | MS.gene006524:CDS |
| GAATTACCCCTGGAGGCCTC+TGG | 0.462918 | 4.2:+32405466 | None:intergenic |
| CAATGCAAAGTGAACTTGTA+TGG | 0.463197 | 4.2:-32407389 | MS.gene006524:CDS |
| AAGACCATTGCACACCAAAT+CGG | 0.493784 | 4.2:-32407816 | MS.gene006524:CDS |
| GTTCTTCGTTTCGGACTCCC+CGG | 0.510103 | 4.2:-32407777 | MS.gene006524:CDS |
| ACAGGAACTCTTGATCACTT+TGG | 0.516207 | 4.2:-32405414 | MS.gene006524:CDS |
| AAATATGGCATCCGAAACAT+AGG | 0.518262 | 4.2:+32403958 | None:intergenic |
| ATGATTATGTGCTACAAAAG+AGG | 0.519341 | 4.2:+32403866 | None:intergenic |
| GTAGGTTCCAGAGGCCTCCA+GGG | 0.520667 | 4.2:-32405473 | MS.gene006524:intron |
| ATTTATAGCATCCGAAACAT+AGG | 0.521550 | 4.2:+32403916 | None:intergenic |
| CATTAGAATTAAAGGGTCCA+TGG | 0.523386 | 4.2:-32404009 | MS.gene006524:intron |
| TTGTTCCTTGTAGGTTCCAG+AGG | 0.530160 | 4.2:-32405482 | MS.gene006524:intron |
| CACTCAAGGAGGAACTTGAC+AGG | 0.531487 | 4.2:-32407355 | MS.gene006524:CDS |
| GTGCAATTAAATATGGTCCA+TGG | 0.535433 | 4.2:+32403992 | None:intergenic |
| TATATAATACTTGGGTACAC+TGG | 0.537892 | 4.2:+32404094 | None:intergenic |
| TCCAAACCCAGCATTGAAGA+AGG | 0.541603 | 4.2:+32405444 | None:intergenic |
| ATTGGACATGCACCACGGAA+TGG | 0.546291 | 4.2:-32404143 | MS.gene006524:CDS |
| CACGGAATGGAAGTTCGCCT+TGG | 0.547717 | 4.2:-32404130 | MS.gene006524:CDS |
| ATTCCGTGGTGCATGTCCAA+TGG | 0.554833 | 4.2:+32404145 | None:intergenic |
| GTGTGGAAGAAGCTATGAAA+AGG | 0.569616 | 4.2:-32407412 | MS.gene006524:CDS |
| CTGTCAAGTTCCTCCTTGAG+TGG | 0.571910 | 4.2:+32407356 | None:intergenic |
| AACGATGTCACTCTTGACAC+CGG | 0.575887 | 4.2:+32407758 | None:intergenic |
| ACCTCCGATTTGGTGTGCAA+TGG | 0.590824 | 4.2:+32407812 | None:intergenic |
| ACGATGTCACTCTTGACACC+GGG | 0.595518 | 4.2:+32407759 | None:intergenic |
| GTTCGCCTTGGTCTATCTAA+GGG | 0.596428 | 4.2:-32404118 | MS.gene006524:CDS |
| CGGCCATTGGACATGCACCA+CGG | 0.610558 | 4.2:-32404148 | MS.gene006524:CDS |
| CGAAAAGTCTCTGATTCACG+AGG | 0.611926 | 4.2:+32404169 | None:intergenic |
| ATTGAAGAAGGAATTACCCC+TGG | 0.637004 | 4.2:+32405456 | None:intergenic |
| GGTGTCAAGAGTGACATCGT+TGG | 0.652058 | 4.2:-32407756 | MS.gene006524:CDS |
| ATTGGAGAGATGATTCGAGA+GGG | 0.655080 | 4.2:+32407727 | None:intergenic |
| CAAGGCGAACTTCCATTCCG+TGG | 0.661589 | 4.2:+32404131 | None:intergenic |
| TAGGTTCCAGAGGCCTCCAG+GGG | 0.666008 | 4.2:-32405472 | MS.gene006524:CDS |
| ACCATTGCACACCAAATCGG+AGG | 0.670349 | 4.2:-32407813 | MS.gene006524:CDS |
| GATTGGAGAGATGATTCGAG+AGG | 0.680344 | 4.2:+32407726 | None:intergenic |
| CGGATGCTATAAATGTTACG+GGG | 0.684518 | 4.2:-32403907 | MS.gene006524:CDS |
| TGTGCTACAAAAGAGGTATG+CGG | 0.685120 | 4.2:+32403873 | None:intergenic |
| GAGTCCGAAACGAAGAACAT+CGG | 0.687032 | 4.2:+32407782 | None:intergenic |
| CTGGTCCCTTAGATAGACCA+AGG | 0.705296 | 4.2:+32404113 | None:intergenic |
| GAAGAAGGAATTACCCCTGG+AGG | 0.721691 | 4.2:+32405459 | None:intergenic |
| GAAAAGTCTCTGATTCACGA+GGG | 0.726373 | 4.2:+32404170 | None:intergenic |
| CGAAACGAAGAACATCGGTG+TGG | 0.742333 | 4.2:+32407787 | None:intergenic |
| CGATGTCACTCTTGACACCG+GGG | 0.751960 | 4.2:+32407760 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAAAAAATTATGATT+TGG | + | chr4.2:32407356-32407375 | None:intergenic | 10.0% |
| !! | AAACTAAAAAATTATGATTT+GGG | + | chr4.2:32407355-32407374 | None:intergenic | 10.0% |
| !! | AATGAAAATGAAATATTATT+AGG | - | chr4.2:32406570-32406589 | MS.gene006524:intron | 10.0% |
| !! | AATTTAGGAAAAAAAAAATA+GGG | - | chr4.2:32404131-32404150 | MS.gene006524:CDS | 10.0% |
| !! | ATGAAAATGAAATATTATTA+GGG | - | chr4.2:32406571-32406590 | MS.gene006524:intron | 10.0% |
| !!! | TTGTTTTTTATTTTAAAGTT+TGG | - | chr4.2:32404218-32404237 | MS.gene006524:intron | 10.0% |
| !!! | TTTAATTTATCTATTTTTCA+AGG | - | chr4.2:32404406-32404425 | MS.gene006524:intron | 10.0% |
| !! | AAAATTTGTATTGTAGAAAT+TGG | - | chr4.2:32404822-32404841 | MS.gene006524:intron | 15.0% |
| !! | AAATGTGTTTATATAATACT+TGG | + | chr4.2:32407626-32407645 | None:intergenic | 15.0% |
| !! | AAATTTGTATTGTAGAAATT+GGG | - | chr4.2:32404823-32404842 | MS.gene006524:intron | 15.0% |
| !! | AATCTTAATAATGATACAAA+TGG | + | chr4.2:32407068-32407087 | None:intergenic | 15.0% |
| !! | AATGAAGCATAATTATAATA+TGG | + | chr4.2:32406709-32406728 | None:intergenic | 15.0% |
| !! | AATGTGTTTATATAATACTT+GGG | + | chr4.2:32407625-32407644 | None:intergenic | 15.0% |
| !! | ACCTTATATATAGATTATAT+AGG | - | chr4.2:32406878-32406897 | MS.gene006524:intron | 15.0% |
| !! | GAATTTAGGAAAAAAAAAAT+AGG | - | chr4.2:32404130-32404149 | MS.gene006524:CDS | 15.0% |
| !! | TCAAATATAAAAGAAAGAAA+TGG | - | chr4.2:32405411-32405430 | MS.gene006524:CDS | 15.0% |
| !! | TCCTATATAATCTATATATA+AGG | + | chr4.2:32406882-32406901 | None:intergenic | 15.0% |
| !! | TTATATATAGATTATATAGG+AGG | - | chr4.2:32406881-32406900 | MS.gene006524:intron | 15.0% |
| !!! | AATTTTTTAGTTTTAGCTAT+TGG | - | chr4.2:32407362-32407381 | MS.gene006524:CDS | 15.0% |
| !!! | ATTTTAATTTTTTGTCACTA+TGG | - | chr4.2:32406388-32406407 | MS.gene006524:intron | 15.0% |
| !!! | CTAAGAGTATTTTTTTTTTT+TGG | - | chr4.2:32405645-32405664 | MS.gene006524:intron | 15.0% |
| !!! | TTTTTTTTTTTGGAAAGAAT+AGG | - | chr4.2:32405655-32405674 | MS.gene006524:intron | 15.0% |
| !! | AAAAAAAAAATACTCTTAGC+AGG | + | chr4.2:32405644-32405663 | None:intergenic | 20.0% |
| !! | AAAAAAAAATACTCTTAGCA+GGG | + | chr4.2:32405643-32405662 | None:intergenic | 20.0% |
| !! | AATTTATTACTACATGCATT+GGG | + | chr4.2:32405490-32405509 | None:intergenic | 20.0% |
| !! | AATTTGTATTGTAGAAATTG+GGG | - | chr4.2:32404824-32404843 | MS.gene006524:intron | 20.0% |
| !! | CACTATTAAAAAGATAAACT+CGG | - | chr4.2:32405099-32405118 | MS.gene006524:intron | 20.0% |
| !! | CCAAAAAACAAAATAATGAA+AGG | + | chr4.2:32406353-32406372 | None:intergenic | 20.0% |
| !! | GTTATATGATCTAATTGAAT+AGG | - | chr4.2:32404191-32404210 | MS.gene006524:intron | 20.0% |
| !! | TGAAAAAACAACAATTAGAT+CGG | + | chr4.2:32404069-32404088 | None:intergenic | 20.0% |
| !! | TGTTGTTCATTAGAATTAAA+GGG | - | chr4.2:32407692-32407711 | MS.gene006524:intron | 20.0% |
| !! | TTACTCTGTTATTAACATAT+GGG | + | chr4.2:32405821-32405840 | None:intergenic | 20.0% |
| !!! | AGTATCTGAAATTAACATAT+GGG | + | chr4.2:32405733-32405752 | None:intergenic | 20.0% |
| !!! | ATATAAGGTTGAATGTTTTA+AGG | + | chr4.2:32406867-32406886 | None:intergenic | 20.0% |
| !!! | CCTTTCATTATTTTGTTTTT+TGG | - | chr4.2:32406350-32406369 | MS.gene006524:intron | 20.0% |
| !!! | TAGTATCTGAAATTAACATA+TGG | + | chr4.2:32405734-32405753 | None:intergenic | 20.0% |
| !!! | TGTATGTTGCTTATTATTTT+TGG | - | chr4.2:32407437-32407456 | MS.gene006524:intron | 20.0% |
| !!! | TTGTTGTTCATTAGAATTAA+AGG | - | chr4.2:32407691-32407710 | MS.gene006524:intron | 20.0% |
| ! | AACTCTTACTCTATTAATAG+TGG | - | chr4.2:32406742-32406761 | MS.gene006524:intron | 25.0% |
| ! | ACAAATAAATTAACGTGCTA+TGG | - | chr4.2:32405511-32405530 | MS.gene006524:intron | 25.0% |
| ! | ACAATCATCTCAAAACAAAA+AGG | + | chr4.2:32406937-32406956 | None:intergenic | 25.0% |
| ! | ACTAGTTAAGGAAACAAAAA+AGG | - | chr4.2:32406605-32406624 | MS.gene006524:intron | 25.0% |
| ! | AGCAAATCTTATGTTTAAAG+AGG | - | chr4.2:32405598-32405617 | MS.gene006524:intron | 25.0% |
| ! | ATAATAAAGTTGAACCAAAC+AGG | + | chr4.2:32406808-32406827 | None:intergenic | 25.0% |
| ! | ATTTGTATTGTAGAAATTGG+GGG | - | chr4.2:32404825-32404844 | MS.gene006524:intron | 25.0% |
| ! | CAATTTATTACTACATGCAT+TGG | + | chr4.2:32405491-32405510 | None:intergenic | 25.0% |
| ! | CTTACTCTGTTATTAACATA+TGG | + | chr4.2:32405822-32405841 | None:intergenic | 25.0% |
| ! | GAAAAAACAACAATTAGATC+GGG | + | chr4.2:32404068-32404087 | None:intergenic | 25.0% |
| ! | GTATCATTATTAAGATTCCA+AGG | - | chr4.2:32407071-32407090 | MS.gene006524:intron | 25.0% |
| ! | TATTATGCATAACTAAGCTT+TGG | - | chr4.2:32406822-32406841 | MS.gene006524:intron | 25.0% |
| ! | TTGAAAGGAAAATACTTTCT+GGG | - | chr4.2:32404669-32404688 | MS.gene006524:intron | 25.0% |
| !! | TAAAAAATTATGATTTGGGC+AGG | + | chr4.2:32407351-32407370 | None:intergenic | 25.0% |
| !! | TCATTCACAGTTCATATTTT+GGG | - | chr4.2:32405970-32405989 | MS.gene006524:intron | 25.0% |
| !! | TTCATTCACAGTTCATATTT+TGG | - | chr4.2:32405969-32405988 | MS.gene006524:intron | 25.0% |
| !!! | AGCTTTATTGTGATTATGAT+GGG | - | chr4.2:32407025-32407044 | MS.gene006524:intron | 25.0% |
| !!! | ATGTGTGTTTGTTTTCATTT+GGG | - | chr4.2:32404254-32404273 | MS.gene006524:intron | 25.0% |
| !!! | CAGGCTATATATAACTTTTT+TGG | + | chr4.2:32407332-32407351 | None:intergenic | 25.0% |
| !!! | CTATTGATCTTTGAAACATT+CGG | - | chr4.2:32406459-32406478 | MS.gene006524:intron | 25.0% |
| !!! | GGTTTTGAAGATTTTCTAAA+TGG | - | chr4.2:32406315-32406334 | MS.gene006524:intron | 25.0% |
| !!! | TATGTGTGTTTGTTTTCATT+TGG | - | chr4.2:32404253-32404272 | MS.gene006524:intron | 25.0% |
| !!! | TTTAGTTTTAGCTATTGGAT+TGG | - | chr4.2:32407367-32407386 | MS.gene006524:CDS | 25.0% |
| AAACACGGAAAGATTAAAAC+AGG | + | chr4.2:32404038-32404057 | None:intergenic | 30.0% | |
| AAACTGAAACAGAAAGAAAG+AGG | + | chr4.2:32404015-32404034 | None:intergenic | 30.0% | |
| AACATTAACAACGTTGAGAA+AGG | + | chr4.2:32407509-32407528 | None:intergenic | 30.0% | |
| AACTACAATCTGATAGATAC+CGG | + | chr4.2:32406985-32407004 | None:intergenic | 30.0% | |
| AACTGAAACAGAAAGAAAGA+GGG | + | chr4.2:32404014-32404033 | None:intergenic | 30.0% | |
| AATGAAATTTCTACTAGGAG+TGG | + | chr4.2:32405955-32405974 | None:intergenic | 30.0% | |
| ACTCACTACTAATACAAACA+AGG | + | chr4.2:32404468-32404487 | None:intergenic | 30.0% | |
| AGTGAGTGTTTGAATTTGTA+TGG | - | chr4.2:32404481-32404500 | MS.gene006524:intron | 30.0% | |
| AGTGTTTGAATTTGTATGGT+AGG | - | chr4.2:32404485-32404504 | MS.gene006524:intron | 30.0% | |
| ATATGTTAATTTCAGTCACC+GGG | - | chr4.2:32405905-32405924 | MS.gene006524:intron | 30.0% | |
| ATATTACCATTGTTCCTTGT+AGG | - | chr4.2:32406217-32406236 | MS.gene006524:intron | 30.0% | |
| ATTTATAGCATCCGAAACAT+AGG | + | chr4.2:32407795-32407814 | None:intergenic | 30.0% | |
| CACAAGTGTGCAATTAAATA+TGG | + | chr4.2:32407726-32407745 | None:intergenic | 30.0% | |
| CATATGTTAATTTCAGTCAC+CGG | - | chr4.2:32405904-32405923 | MS.gene006524:intron | 30.0% | |
| CCATATCCATATGAAAGAAT+AGG | + | chr4.2:32405771-32405790 | None:intergenic | 30.0% | |
| CCTATTCTTTCATATGGATA+TGG | - | chr4.2:32405768-32405787 | MS.gene006524:intron | 30.0% | |
| CGAACACATTTCTTCATAAT+CGG | + | chr4.2:32405218-32405237 | None:intergenic | 30.0% | |
| CGCAATCTTTAACTATATCA+TGG | + | chr4.2:32407413-32407432 | None:intergenic | 30.0% | |
| CTGTGAATGAAATTTCTACT+AGG | + | chr4.2:32405960-32405979 | None:intergenic | 30.0% | |
| CTTGAAAGGAAAATACTTTC+TGG | - | chr4.2:32404668-32404687 | MS.gene006524:intron | 30.0% | |
| GACTGAAATTAACATATGGA+TGG | + | chr4.2:32405902-32405921 | None:intergenic | 30.0% | |
| GCTTAAAATATTAACGCTAG+TGG | + | chr4.2:32407287-32407306 | None:intergenic | 30.0% | |
| TACAAATGGAACATAATTGC+AGG | + | chr4.2:32407054-32407073 | None:intergenic | 30.0% | |
| TACAAGGAACAATGGTAATA+TGG | + | chr4.2:32406218-32406237 | None:intergenic | 30.0% | |
| TATATAATACTTGGGTACAC+TGG | + | chr4.2:32407617-32407636 | None:intergenic | 30.0% | |
| TCAGATCCTATTCTTTCATA+TGG | - | chr4.2:32405762-32405781 | MS.gene006524:intron | 30.0% | |
| TCTCAAAACAAAAAGGAACT+TGG | + | chr4.2:32406930-32406949 | None:intergenic | 30.0% | |
| TGAATGTGAGTTAACTAACT+TGG | - | chr4.2:32404615-32404634 | MS.gene006524:intron | 30.0% | |
| TTCGGATGCTATAAATGTTA+CGG | - | chr4.2:32407799-32407818 | MS.gene006524:CDS | 30.0% | |
| ! | ACACTTTAAATTGATAACCG+TGG | - | chr4.2:32407104-32407123 | MS.gene006524:intron | 30.0% |
| ! | ATATAGGAGGAAGATGTTTT+TGG | - | chr4.2:32406894-32406913 | MS.gene006524:intron | 30.0% |
| ! | CTCTCTACTTGTTAAAAACA+AGG | + | chr4.2:32404798-32404817 | None:intergenic | 30.0% |
| ! | GCTTTATTGTGATTATGATG+GGG | - | chr4.2:32407026-32407045 | MS.gene006524:intron | 30.0% |
| ! | GTTAGAATTGTTTTCCTGTT+TGG | - | chr4.2:32406791-32406810 | MS.gene006524:intron | 30.0% |
| ! | TACTGTTCTTGTTTCCTTAA+GGG | - | chr4.2:32406667-32406686 | MS.gene006524:intron | 30.0% |
| ! | TCTTATGTTTAAAGAGGCAT+CGG | - | chr4.2:32405604-32405623 | MS.gene006524:intron | 30.0% |
| ! | TTACTGTTCTTGTTTCCTTA+AGG | - | chr4.2:32406666-32406685 | MS.gene006524:intron | 30.0% |
| ! | TTTTCCTAAATTCAAAACCC+TGG | + | chr4.2:32404123-32404142 | None:intergenic | 30.0% |
| !! | ACAGTTCATATTTTGGGTAA+TGG | - | chr4.2:32405976-32405995 | MS.gene006524:intron | 30.0% |
| !! | AGATTCATATGGATTTTGAC+CGG | + | chr4.2:32405855-32405874 | None:intergenic | 30.0% |
| !! | CAGTTCATATTTTGGGTAAT+GGG | - | chr4.2:32405977-32405996 | MS.gene006524:intron | 30.0% |
| !! | CTAGCGTTAATATTTTAAGC+AGG | - | chr4.2:32407287-32407306 | MS.gene006524:intron | 30.0% |
| !! | GAGCTTTATTGTGATTATGA+TGG | - | chr4.2:32407024-32407043 | MS.gene006524:intron | 30.0% |
| !!! | GCTTATTATTTTTGGCTCAT+TGG | - | chr4.2:32407445-32407464 | MS.gene006524:intron | 30.0% |
| !!! | TTCATTTGGGTGTTGTTTTT+AGG | - | chr4.2:32404267-32404286 | MS.gene006524:intron | 30.0% |
| AAATATGGCATCCGAAACAT+AGG | + | chr4.2:32407753-32407772 | None:intergenic | 35.0% | |
| AACCCCAATTATATCAAGCA+GGG | + | chr4.2:32406769-32406788 | None:intergenic | 35.0% | |
| AAGAAAGAGGGATTACAGAT+TGG | + | chr4.2:32404002-32404021 | None:intergenic | 35.0% | |
| AATGTTAACTAGTGCCCTTA+AGG | + | chr4.2:32406684-32406703 | None:intergenic | 35.0% | |
| ACTTGTGTTTGCCTATGTTT+CGG | - | chr4.2:32407739-32407758 | MS.gene006524:CDS | 35.0% | |
| AGATATCTCAACTGTGGTTA+TGG | + | chr4.2:32404891-32404910 | None:intergenic | 35.0% | |
| AGATCGGGTAAAGATAAACA+CGG | + | chr4.2:32404053-32404072 | None:intergenic | 35.0% | |
| AGCTCATATATTGGGGAAAT+AGG | - | chr4.2:32404520-32404539 | MS.gene006524:intron | 35.0% | |
| AGGCAAATTCTTTCTAGGTA+CGG | - | chr4.2:32404373-32404392 | MS.gene006524:intron | 35.0% | |
| ATATGGGAAACCATATCCAA+CGG | + | chr4.2:32405717-32405736 | None:intergenic | 35.0% | |
| CAATGCAAAGTGAACTTGTA+TGG | - | chr4.2:32404319-32404338 | MS.gene006524:intron | 35.0% | |
| CATTAGAATTAAAGGGTCCA+TGG | - | chr4.2:32407699-32407718 | MS.gene006524:intron | 35.0% | |
| CGGTGACTGAAATTAACATA+TGG | + | chr4.2:32405906-32405925 | None:intergenic | 35.0% | |
| CTCTCAAGTCAAAGTTTACA+TGG | + | chr4.2:32405140-32405159 | None:intergenic | 35.0% | |
| GAATGCAAGCTAAATCATGT+TGG | - | chr4.2:32406020-32406039 | MS.gene006524:intron | 35.0% | |
| GCAAATCATCAAATCACATG+AGG | + | chr4.2:32406119-32406138 | None:intergenic | 35.0% | |
| GTAATTCCTTCTTCAATGCT+GGG | - | chr4.2:32406258-32406277 | MS.gene006524:intron | 35.0% | |
| GTGAGTTAACTAACTTGGTA+TGG | - | chr4.2:32404620-32404639 | MS.gene006524:intron | 35.0% | |
| GTGCAATTAAATATGGTCCA+TGG | + | chr4.2:32407719-32407738 | None:intergenic | 35.0% | |
| GTTGGGTACTAAGATTCATA+TGG | + | chr4.2:32405866-32405885 | None:intergenic | 35.0% | |
| TAACCCCAATTATATCAAGC+AGG | + | chr4.2:32406770-32406789 | None:intergenic | 35.0% | |
| TACTGAATGAGGAACTTGAA+AGG | - | chr4.2:32404654-32404673 | MS.gene006524:intron | 35.0% | |
| TCAATCGCAGCTCATATATT+GGG | - | chr4.2:32404512-32404531 | MS.gene006524:intron | 35.0% | |
| TCATTCAGCAAAAGAAGCAA+CGG | + | chr4.2:32406555-32406574 | None:intergenic | 35.0% | |
| TCGGATGCTATAAATGTTAC+GGG | - | chr4.2:32407800-32407819 | MS.gene006524:CDS | 35.0% | |
| TTCAATCGCAGCTCATATAT+TGG | - | chr4.2:32404511-32404530 | MS.gene006524:intron | 35.0% | |
| TTGACAGGCAAATTCTTTCT+AGG | - | chr4.2:32404368-32404387 | MS.gene006524:intron | 35.0% | |
| TTTATTGCTAAGAGAGAGAG+TGG | - | chr4.2:32406174-32406193 | MS.gene006524:intron | 35.0% | |
| ! | AAAGTGTCATGTAAAGTCCT+TGG | + | chr4.2:32407091-32407110 | None:intergenic | 35.0% |
| ! | CACTGTGAAATCTGAGATAT+AGG | + | chr4.2:32405010-32405029 | None:intergenic | 35.0% |
| ! | TTTGAGACTCACAAATTGAC+AGG | + | chr4.2:32405579-32405598 | None:intergenic | 35.0% |
| ! | TTTTGATGTTAGCGATTCCA+GGG | - | chr4.2:32404103-32404122 | MS.gene006524:intron | 35.0% |
| !! | AGAGGTATGCGGTTTTTATA+TGG | + | chr4.2:32407827-32407846 | None:intergenic | 35.0% |
| !! | ATTTTGATGTTAGCGATTCC+AGG | - | chr4.2:32404102-32404121 | MS.gene006524:intron | 35.0% |
| !! | CCAAATCAAAGAGCTTTAGA+AGG | - | chr4.2:32405302-32405321 | MS.gene006524:intron | 35.0% |
| !! | CCTTCTAAAGCTCTTTGATT+TGG | + | chr4.2:32405305-32405324 | None:intergenic | 35.0% |
| !! | TATGTTAGACTCTGAAACCA+CGG | + | chr4.2:32407124-32407143 | None:intergenic | 35.0% |
| !! | TTTCAAGTTCCTCATTCAGT+AGG | + | chr4.2:32404655-32404674 | None:intergenic | 35.0% |
| !!! | ATTTTGGGTAATGGGAACAT+AGG | - | chr4.2:32405985-32406004 | MS.gene006524:intron | 35.0% |
| !!! | GATTCCAGGGTTTTGAATTT+AGG | - | chr4.2:32404116-32404135 | MS.gene006524:CDS | 35.0% |
| !!! | TGGGTGTTGTTTTTAGGTAA+GGG | - | chr4.2:32404273-32404292 | MS.gene006524:intron | 35.0% |
| !!! | TTGGGTGTTGTTTTTAGGTA+AGG | - | chr4.2:32404272-32404291 | MS.gene006524:intron | 35.0% |
| AAACAGCATATGACCAAACC+CGG | + | chr4.2:32405926-32405945 | None:intergenic | 40.0% | |
| AACATATGGATGGTCTCTTG+TGG | + | chr4.2:32405892-32405911 | None:intergenic | 40.0% | |
| AAGACCATTGCACACCAAAT+CGG | - | chr4.2:32403892-32403911 | MS.gene006524:CDS | 40.0% | |
| ACAGGAACTCTTGATCACTT+TGG | - | chr4.2:32406294-32406313 | MS.gene006524:intron | 40.0% | |
| ACATATGGATGGTCTCTTGT+GGG | + | chr4.2:32405891-32405910 | None:intergenic | 40.0% | |
| ACTTTCTGGGTACGAGTATT+TGG | - | chr4.2:32404682-32404701 | MS.gene006524:intron | 40.0% | |
| ATCTCAACTGTGGTTATGGA+AGG | + | chr4.2:32404887-32404906 | None:intergenic | 40.0% | |
| ATTGAAGAAGGAATTACCCC+TGG | + | chr4.2:32406255-32406274 | None:intergenic | 40.0% | |
| ATTGGAGAGATGATTCGAGA+GGG | + | chr4.2:32403984-32404003 | None:intergenic | 40.0% | |
| ATTGTGTCAGACTTCAGATC+AGG | - | chr4.2:32406952-32406971 | MS.gene006524:intron | 40.0% | |
| CAATCGCAGCTCATATATTG+GGG | - | chr4.2:32404513-32404532 | MS.gene006524:intron | 40.0% | |
| CGGATGCTATAAATGTTACG+GGG | - | chr4.2:32407801-32407820 | MS.gene006524:CDS | 40.0% | |
| GAAAAGTCTCTGATTCACGA+GGG | + | chr4.2:32407541-32407560 | None:intergenic | 40.0% | |
| GGATGTAGATATCTCAACTG+TGG | + | chr4.2:32404897-32404916 | None:intergenic | 40.0% | |
| GGCAAATTCTTTCTAGGTAC+GGG | - | chr4.2:32404374-32404393 | MS.gene006524:intron | 40.0% | |
| GGTAATTCCTTCTTCAATGC+TGG | - | chr4.2:32406257-32406276 | MS.gene006524:intron | 40.0% | |
| GGTCCCTGCTTGATATAATT+GGG | - | chr4.2:32406763-32406782 | MS.gene006524:intron | 40.0% | |
| GTCATGCAAGACACTAGTTA+AGG | - | chr4.2:32406593-32406612 | MS.gene006524:intron | 40.0% | |
| GTCCCTGCTTGATATAATTG+GGG | - | chr4.2:32406764-32406783 | MS.gene006524:intron | 40.0% | |
| GTGTGGAAGAAGCTATGAAA+AGG | - | chr4.2:32404296-32404315 | MS.gene006524:intron | 40.0% | |
| GTTAACTAACAGCGCAATGT+TGG | - | chr4.2:32406082-32406101 | MS.gene006524:intron | 40.0% | |
| TGGGGAAATAGGACAAACAA+TGG | - | chr4.2:32404531-32404550 | MS.gene006524:intron | 40.0% | |
| TGGTCCCTGCTTGATATAAT+TGG | - | chr4.2:32406762-32406781 | MS.gene006524:intron | 40.0% | |
| TGTATTGTAGAAATTGGGGG+TGG | - | chr4.2:32404828-32404847 | MS.gene006524:intron | 40.0% | |
| TTAATTTCAGTCACCGGGTT+TGG | - | chr4.2:32405910-32405929 | MS.gene006524:intron | 40.0% | |
| ! | CTCGTGAATCAGAGACTTTT+CGG | - | chr4.2:32407540-32407559 | MS.gene006524:intron | 40.0% |
| !! | AGCTGTTTTCCTACTGAATG+AGG | - | chr4.2:32404643-32404662 | MS.gene006524:intron | 40.0% |
| !! | ATGTGGCACTTTGTTGTTGT+TGG | - | chr4.2:32407469-32407488 | MS.gene006524:intron | 40.0% |
| !! | ATTGGTTCTGTCGTGAACTA+GGG | - | chr4.2:32407385-32407404 | MS.gene006524:CDS | 40.0% |
| !! | CTTCAGATCAGGTATTGAAC+CGG | - | chr4.2:32406963-32406982 | MS.gene006524:intron | 40.0% |
| !!! | ATTTTTGGCTCATTGGCATG+TGG | - | chr4.2:32407452-32407471 | MS.gene006524:intron | 40.0% |
| !!! | GGGTGTTGTTTTTAGGTAAG+GGG | - | chr4.2:32404274-32404293 | MS.gene006524:intron | 40.0% |
| !!! | TTGTTTTTAGGTAAGGGGTG+TGG | - | chr4.2:32404279-32404298 | MS.gene006524:intron | 40.0% |
| AACGATGTCACTCTTGACAC+CGG | + | chr4.2:32403953-32403972 | None:intergenic | 45.0% | |
| AAGCAGTCGAGATGATTGTG+TGG | - | chr4.2:32405326-32405345 | MS.gene006524:intron | 45.0% | |
| AGAAATTGGGGGTGGATGAT+CGG | - | chr4.2:32404836-32404855 | MS.gene006524:intron | 45.0% | |
| AGTTCGCCTTGGTCTATCTA+AGG | - | chr4.2:32407589-32407608 | MS.gene006524:intron | 45.0% | |
| CAATCCACATTCCAAACGGA+CGG | + | chr4.2:32404924-32404943 | None:intergenic | 45.0% | |
| CACACCGATGTTCTTCGTTT+CGG | - | chr4.2:32403922-32403941 | MS.gene006524:CDS | 45.0% | |
| CGAAAAGTCTCTGATTCACG+AGG | + | chr4.2:32407542-32407561 | None:intergenic | 45.0% | |
| CGACCAATCCACATTCCAAA+CGG | + | chr4.2:32404928-32404947 | None:intergenic | 45.0% | |
| CTGGAACCTACAAGGAACAA+TGG | + | chr4.2:32406226-32406245 | None:intergenic | 45.0% | |
| GAGTCCGAAACGAAGAACAT+CGG | + | chr4.2:32403929-32403948 | None:intergenic | 45.0% | |
| GATTGGAGAGATGATTCGAG+AGG | + | chr4.2:32403985-32404004 | None:intergenic | 45.0% | |
| GTGTTCGAATCACCATGCTT+AGG | - | chr4.2:32405231-32405250 | MS.gene006524:intron | 45.0% | |
| GTTCGCCTTGGTCTATCTAA+GGG | - | chr4.2:32407590-32407609 | MS.gene006524:intron | 45.0% | |
| TCCTTCTTCAATGCTGGGTT+TGG | - | chr4.2:32406263-32406282 | MS.gene006524:intron | 45.0% | |
| TGACTCAAGCTCAAGAGTAG+AGG | + | chr4.2:32405394-32405413 | None:intergenic | 45.0% | |
| TGCAATATGCCACCTAAGCA+TGG | + | chr4.2:32405246-32405265 | None:intergenic | 45.0% | |
| TTCGAATCACCATGCTTAGG+TGG | - | chr4.2:32405234-32405253 | MS.gene006524:intron | 45.0% | |
| TTGTTCCTTGTAGGTTCCAG+AGG | - | chr4.2:32406226-32406245 | MS.gene006524:intron | 45.0% | |
| ! | ATCAGAGACTTTTCGGCCAT+TGG | - | chr4.2:32407547-32407566 | MS.gene006524:intron | 45.0% |
| ! | ATGGTCTCTTGTGGGTTGTT+GGG | + | chr4.2:32405883-32405902 | None:intergenic | 45.0% |
| ! | TCCAAACCCAGCATTGAAGA+AGG | + | chr4.2:32406267-32406286 | None:intergenic | 45.0% |
| !! | CGTTTGGAATGTGGATTGGT+CGG | - | chr4.2:32404926-32404945 | MS.gene006524:intron | 45.0% |
| !! | GATTGGTTCTGTCGTGAACT+AGG | - | chr4.2:32407384-32407403 | MS.gene006524:CDS | 45.0% |
| !! | GTTTGGAATGTGGATTGGTC+GGG | - | chr4.2:32404927-32404946 | MS.gene006524:intron | 45.0% |
| ACATTCCAAACGGACGGTGA+TGG | + | chr4.2:32404918-32404937 | None:intergenic | 50.0% | |
| ACCATTGCACACCAAATCGG+AGG | - | chr4.2:32403895-32403914 | MS.gene006524:CDS | 50.0% | |
| ACGATGTCACTCTTGACACC+GGG | + | chr4.2:32403952-32403971 | None:intergenic | 50.0% | |
| ACTAACAGCGCAATGTTGGC+TGG | - | chr4.2:32406086-32406105 | MS.gene006524:intron | 50.0% | |
| ATTCCGTGGTGCATGTCCAA+TGG | + | chr4.2:32407566-32407585 | None:intergenic | 50.0% | |
| ATTGGACATGCACCACGGAA+TGG | - | chr4.2:32407565-32407584 | MS.gene006524:intron | 50.0% | |
| CACTCAAGGAGGAACTTGAC+AGG | - | chr4.2:32404353-32404372 | MS.gene006524:intron | 50.0% | |
| CAGAGTAAGAATAGCAGCGC+CGG | - | chr4.2:32405833-32405852 | MS.gene006524:intron | 50.0% | |
| CGAAACGAAGAACATCGGTG+TGG | + | chr4.2:32403924-32403943 | None:intergenic | 50.0% | |
| CTGGGTTTGGAGACTGTTAC+AGG | - | chr4.2:32406276-32406295 | MS.gene006524:intron | 50.0% | |
| CTGGTCCCTTAGATAGACCA+AGG | + | chr4.2:32407598-32407617 | None:intergenic | 50.0% | |
| CTGTCAAGTTCCTCCTTGAG+TGG | + | chr4.2:32404355-32404374 | None:intergenic | 50.0% | |
| GAAGAAGGAATTACCCCTGG+AGG | + | chr4.2:32406252-32406271 | None:intergenic | 50.0% | |
| GGTGTCAAGAGTGACATCGT+TGG | - | chr4.2:32403952-32403971 | MS.gene006524:CDS | 50.0% | |
| TACATCCATCACCGTCCGTT+TGG | - | chr4.2:32404910-32404929 | MS.gene006524:intron | 50.0% | |
| TCGAGATGATTGTGTGGCAG+TGG | - | chr4.2:32405332-32405351 | MS.gene006524:intron | 50.0% | |
| TGGATATGGTTGTCGCGCAT+CGG | - | chr4.2:32405782-32405801 | MS.gene006524:intron | 50.0% | |
| TGTGGCAGTGGCAAGTATTC+TGG | - | chr4.2:32405344-32405363 | MS.gene006524:intron | 50.0% | |
| ! | ATCACCGTCCGTTTGGAATG+TGG | - | chr4.2:32404917-32404936 | MS.gene006524:intron | 50.0% |
| ! | CGTCCGTTTGGAATGTGGAT+TGG | - | chr4.2:32404922-32404941 | MS.gene006524:intron | 50.0% |
| ! | GATGGTCTCTTGTGGGTTGT+TGG | + | chr4.2:32405884-32405903 | None:intergenic | 50.0% |
| !! | ACCTCCGATTTGGTGTGCAA+TGG | + | chr4.2:32403899-32403918 | None:intergenic | 50.0% |
| !! | TGTCGCGCATCGGTTGAATA+TGG | - | chr4.2:32405792-32405811 | MS.gene006524:intron | 50.0% |
| !!! | AGCTGCTTTTCCACTCAAGG+AGG | - | chr4.2:32404342-32404361 | MS.gene006524:intron | 50.0% |
| !!! | TGGAGCTGCTTTTCCACTCA+AGG | - | chr4.2:32404339-32404358 | MS.gene006524:intron | 50.0% |
| AGCAGCGCATCCGTTGGATA+TGG | - | chr4.2:32405704-32405723 | MS.gene006524:intron | 55.0% | |
| ATTGGGGGTGGATGATCGGT+TGG | - | chr4.2:32404840-32404859 | MS.gene006524:intron | 55.0% | |
| CAACGGATGCGCTGCTATTC+TGG | + | chr4.2:32405700-32405719 | None:intergenic | 55.0% | |
| CAAGGCGAACTTCCATTCCG+TGG | + | chr4.2:32407580-32407599 | None:intergenic | 55.0% | |
| CACGGAATGGAAGTTCGCCT+TGG | - | chr4.2:32407578-32407597 | MS.gene006524:intron | 55.0% | |
| CAGAATAGCAGCGCATCCGT+TGG | - | chr4.2:32405698-32405717 | MS.gene006524:intron | 55.0% | |
| CGATGTCACTCTTGACACCG+GGG | + | chr4.2:32403951-32403970 | None:intergenic | 55.0% | |
| GTTCTTCGTTTCGGACTCCC+CGG | - | chr4.2:32403931-32403950 | MS.gene006524:CDS | 55.0% | |
| !! | AATGTGGATTGGTCGGGTCG+TGG | - | chr4.2:32404933-32404952 | MS.gene006524:intron | 55.0% |
| !! | CGTGGATTGGTTGGGCTTTC+AGG | - | chr4.2:32404951-32404970 | MS.gene006524:intron | 55.0% |
| CGGCCATTGGACATGCACCA+CGG | - | chr4.2:32407560-32407579 | MS.gene006524:intron | 60.0% | |
| CGGTGTGGACACCTCCGATT+TGG | + | chr4.2:32403909-32403928 | None:intergenic | 60.0% | |
| GAATTACCCCTGGAGGCCTC+TGG | + | chr4.2:32406245-32406264 | None:intergenic | 60.0% | |
| GTAGGTTCCAGAGGCCTCCA+GGG | - | chr4.2:32406235-32406254 | MS.gene006524:intron | 60.0% | |
| TAGGTTCCAGAGGCCTCCAG+GGG | - | chr4.2:32406236-32406255 | MS.gene006524:intron | 60.0% | |
| TGTAGGTTCCAGAGGCCTCC+AGG | - | chr4.2:32406234-32406253 | MS.gene006524:intron | 60.0% | |
| ! | ACAGCGCAATGTTGGCTGGC+TGG | - | chr4.2:32406090-32406109 | MS.gene006524:intron | 60.0% |
| !! | GGAGGCCTCTGGAACCTACA+AGG | + | chr4.2:32406234-32406253 | None:intergenic | 60.0% |
| !! | GGATTGGTCGGGTCGTGGAT+TGG | - | chr4.2:32404938-32404957 | MS.gene006524:intron | 60.0% |
| !! | GGTCGGGTCGTGGATTGGTT+GGG | - | chr4.2:32404943-32404962 | MS.gene006524:intron | 60.0% |
| !! | TGGTCGGGTCGTGGATTGGT+TGG | - | chr4.2:32404942-32404961 | MS.gene006524:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 32403877 | 32407853 | 32403877 | ID=MS.gene006524 |
| chr4.2 | mRNA | 32403877 | 32407853 | 32403877 | ID=MS.gene006524.t1;Parent=MS.gene006524 |
| chr4.2 | exon | 32407725 | 32407853 | 32407725 | ID=MS.gene006524.t1.exon1;Parent=MS.gene006524.t1 |
| chr4.2 | CDS | 32407725 | 32407853 | 32407725 | ID=cds.MS.gene006524.t1;Parent=MS.gene006524.t1 |
| chr4.2 | exon | 32407341 | 32407441 | 32407341 | ID=MS.gene006524.t1.exon2;Parent=MS.gene006524.t1 |
| chr4.2 | CDS | 32407341 | 32407441 | 32407341 | ID=cds.MS.gene006524.t1;Parent=MS.gene006524.t1 |
| chr4.2 | exon | 32405394 | 32405491 | 32405394 | ID=MS.gene006524.t1.exon3;Parent=MS.gene006524.t1 |
| chr4.2 | CDS | 32405394 | 32405491 | 32405394 | ID=cds.MS.gene006524.t1;Parent=MS.gene006524.t1 |
| chr4.2 | exon | 32404104 | 32404193 | 32404104 | ID=MS.gene006524.t1.exon4;Parent=MS.gene006524.t1 |
| chr4.2 | CDS | 32404104 | 32404193 | 32404104 | ID=cds.MS.gene006524.t1;Parent=MS.gene006524.t1 |
| chr4.2 | exon | 32403877 | 32404025 | 32403877 | ID=MS.gene006524.t1.exon5;Parent=MS.gene006524.t1 |
| chr4.2 | CDS | 32403877 | 32404025 | 32403877 | ID=cds.MS.gene006524.t1;Parent=MS.gene006524.t1 |
| Gene Sequence |
| Protein sequence |
