Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052354.t1 | XP_013456604.1 | 97.9 | 142 | 3 | 0 | 1 | 142 | 1 | 142 | 3.80E-74 | 287.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052354.t1 | Q0DWQ7 | 49.5 | 109 | 53 | 2 | 8 | 115 | 7 | 114 | 8.3e-22 | 104.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052354.t1 | I3RZJ2 | 97.9 | 142 | 3 | 0 | 1 | 142 | 1 | 142 | 2.7e-74 | 287.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052354 | MS.gene006520 | PPI |
| MS.gene006522 | MS.gene052354 | PPI |
| MS.gene052354 | MS.gene001456 | PPI |
| MS.gene052354 | MS.gene006524 | PPI |
| MS.gene74458 | MS.gene052354 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052354.t1 | MTR_4g077240 | 97.887 | 142 | 3 | 0 | 1 | 142 | 1 | 142 | 4.35e-100 | 283 |
| MS.gene052354.t1 | MTR_5g008020 | 61.972 | 142 | 35 | 1 | 1 | 142 | 1 | 123 | 3.34e-56 | 171 |
| MS.gene052354.t1 | MTR_5g008020 | 67.708 | 96 | 31 | 0 | 1 | 96 | 1 | 96 | 1.16e-42 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052354.t1 | AT1G67250 | 67.857 | 140 | 45 | 0 | 3 | 142 | 2 | 141 | 4.64e-69 | 205 |
| MS.gene052354.t1 | AT5G38650 | 67.857 | 140 | 45 | 0 | 3 | 142 | 2 | 141 | 9.14e-67 | 199 |
| MS.gene052354.t1 | AT5G38660 | 67.857 | 140 | 45 | 0 | 3 | 142 | 292 | 431 | 2.81e-63 | 199 |
Find 45 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACAGGCAAATTCTTTCT+AGG | 0.239502 | 4.4:-33422735 | MS.gene052354:intron |
| CTGGGTTTGGAGACTGTTAC+AGG | 0.300396 | 4.4:-33420827 | MS.gene052354:CDS |
| TCCTTCTTCAATGCTGGGTT+TGG | 0.302948 | 4.4:-33420840 | MS.gene052354:CDS |
| AGTTCGCCTTGGTCTATCTA+AGG | 0.328350 | 4.4:-33419514 | MS.gene052354:CDS |
| GGTAATTCCTTCTTCAATGC+TGG | 0.336438 | 4.4:-33420846 | MS.gene052354:CDS |
| CACACCGATGTTCTTCGTTT+CGG | 0.369713 | 4.4:-33423181 | MS.gene052354:CDS |
| AAATGTGTTTATATAATACT+TGG | 0.379976 | 4.4:+33419480 | None:intergenic |
| TGTAGGTTCCAGAGGCCTCC+AGG | 0.394850 | 4.4:-33420869 | MS.gene052354:intron |
| CGGTGTGGACACCTCCGATT+TGG | 0.398903 | 4.4:+33423197 | None:intergenic |
| GTAATTCCTTCTTCAATGCT+GGG | 0.431838 | 4.4:-33420845 | MS.gene052354:CDS |
| GAATTACCCCTGGAGGCCTC+TGG | 0.462918 | 4.4:+33420861 | None:intergenic |
| CAATGCAAAGTGAACTTGTA+TGG | 0.463197 | 4.4:-33422784 | MS.gene052354:CDS |
| AAGACCATTGCACACCAAAT+CGG | 0.493784 | 4.4:-33423211 | MS.gene052354:CDS |
| GTTCTTCGTTTCGGACTCCC+CGG | 0.510103 | 4.4:-33423172 | MS.gene052354:CDS |
| ACAGGAACTCTTGATCACTT+TGG | 0.516207 | 4.4:-33420809 | MS.gene052354:CDS |
| GTAGGTTCCAGAGGCCTCCA+GGG | 0.520667 | 4.4:-33420868 | MS.gene052354:intron |
| TTGTTCCTTGTAGGTTCCAG+AGG | 0.530160 | 4.4:-33420877 | MS.gene052354:intron |
| CACTCAAGGAGGAACTTGAC+AGG | 0.531487 | 4.4:-33422750 | MS.gene052354:CDS |
| TATATAATACTTGGGTACAC+TGG | 0.537892 | 4.4:+33419489 | None:intergenic |
| TCCAAACCCAGCATTGAAGA+AGG | 0.541603 | 4.4:+33420839 | None:intergenic |
| ATTGGACATGCACCACGGAA+TGG | 0.546291 | 4.4:-33419538 | MS.gene052354:CDS |
| CACGGAATGGAAGTTCGCCT+TGG | 0.547717 | 4.4:-33419525 | MS.gene052354:CDS |
| ATTCCGTGGTGCATGTCCAA+TGG | 0.554833 | 4.4:+33419540 | None:intergenic |
| GTGTGGAAGAAGCTATGAAA+AGG | 0.569616 | 4.4:-33422807 | MS.gene052354:CDS |
| CTGTCAAGTTCCTCCTTGAG+TGG | 0.571910 | 4.4:+33422751 | None:intergenic |
| AATGTGTTTATATAATACTT+GGG | 0.572452 | 4.4:+33419481 | None:intergenic |
| AACGATGTCACTCTTGACAC+CGG | 0.575887 | 4.4:+33423153 | None:intergenic |
| ACCTCCGATTTGGTGTGCAA+TGG | 0.590824 | 4.4:+33423207 | None:intergenic |
| ACGATGTCACTCTTGACACC+GGG | 0.595518 | 4.4:+33423154 | None:intergenic |
| GTTCGCCTTGGTCTATCTAA+GGG | 0.596428 | 4.4:-33419513 | MS.gene052354:CDS |
| CGGCCATTGGACATGCACCA+CGG | 0.610558 | 4.4:-33419543 | MS.gene052354:CDS |
| CGAAAAGTCTCTGATTCACG+AGG | 0.611926 | 4.4:+33419564 | None:intergenic |
| ATTGAAGAAGGAATTACCCC+TGG | 0.637004 | 4.4:+33420851 | None:intergenic |
| GGTGTCAAGAGTGACATCGT+TGG | 0.652058 | 4.4:-33423151 | MS.gene052354:CDS |
| ATTGGAGAGATGATTCGAGA+GGG | 0.655080 | 4.4:+33423122 | None:intergenic |
| CAAGGCGAACTTCCATTCCG+TGG | 0.661589 | 4.4:+33419526 | None:intergenic |
| TAGGTTCCAGAGGCCTCCAG+GGG | 0.666008 | 4.4:-33420867 | MS.gene052354:CDS |
| ACCATTGCACACCAAATCGG+AGG | 0.670349 | 4.4:-33423208 | MS.gene052354:CDS |
| GATTGGAGAGATGATTCGAG+AGG | 0.680344 | 4.4:+33423121 | None:intergenic |
| GAGTCCGAAACGAAGAACAT+CGG | 0.687032 | 4.4:+33423177 | None:intergenic |
| CTGGTCCCTTAGATAGACCA+AGG | 0.705296 | 4.4:+33419508 | None:intergenic |
| GAAGAAGGAATTACCCCTGG+AGG | 0.721691 | 4.4:+33420854 | None:intergenic |
| GAAAAGTCTCTGATTCACGA+GGG | 0.726373 | 4.4:+33419565 | None:intergenic |
| CGAAACGAAGAACATCGGTG+TGG | 0.742333 | 4.4:+33423182 | None:intergenic |
| CGATGTCACTCTTGACACCG+GGG | 0.751960 | 4.4:+33423155 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAAATGAAATATTATT+AGG | - | chr4.4:33422181-33422200 | MS.gene052354:intron | 10.0% |
| !! | ATGAAAATGAAATATTATTA+GGG | - | chr4.4:33422182-33422201 | MS.gene052354:intron | 10.0% |
| !!! | TTGTTTTTTATTTTAAAGTT+TGG | - | chr4.4:33419829-33419848 | MS.gene052354:intron | 10.0% |
| !!! | TTTAATTTATCTATTTTTCA+AGG | - | chr4.4:33420017-33420036 | MS.gene052354:intron | 10.0% |
| !! | AAAATTTGTATTGTAGAAAT+TGG | - | chr4.4:33420433-33420452 | MS.gene052354:intron | 15.0% |
| !! | AAATTTGTATTGTAGAAATT+GGG | - | chr4.4:33420434-33420453 | MS.gene052354:intron | 15.0% |
| !! | AATCTTAATAATGATACAAA+TGG | + | chr4.4:33422679-33422698 | None:intergenic | 15.0% |
| !! | AATGAAGCATAATTATAATA+TGG | + | chr4.4:33422320-33422339 | None:intergenic | 15.0% |
| !! | ACCTTATATATAGATTATAT+AGG | - | chr4.4:33422489-33422508 | MS.gene052354:intron | 15.0% |
| !! | GAATTTAGGAAAAAAAAATA+GGG | - | chr4.4:33419742-33419761 | MS.gene052354:intron | 15.0% |
| !! | TCAAATATAAAAGAAAGAAA+TGG | - | chr4.4:33421022-33421041 | MS.gene052354:intron | 15.0% |
| !! | TCCTATATAATCTATATATA+AGG | + | chr4.4:33422493-33422512 | None:intergenic | 15.0% |
| !! | TGAATTTAGGAAAAAAAAAT+AGG | - | chr4.4:33419741-33419760 | MS.gene052354:intron | 15.0% |
| !!! | AATTTTTTAGTTTTAGCTAT+TGG | - | chr4.4:33422973-33422992 | MS.gene052354:intron | 15.0% |
| !!! | ATTTTAATTTTTTGTCACTA+TGG | - | chr4.4:33421999-33422018 | MS.gene052354:intron | 15.0% |
| !!! | CTAAGAGTATTTTTTTTTTT+TGG | - | chr4.4:33421256-33421275 | MS.gene052354:intron | 15.0% |
| !!! | TTTTTTTTTTTGGAAAGAAT+AGG | - | chr4.4:33421266-33421285 | MS.gene052354:intron | 15.0% |
| !! | AAAAAAAAAATACTCTTAGC+AGG | + | chr4.4:33421255-33421274 | None:intergenic | 20.0% |
| !! | AAAAAAAAATACTCTTAGCA+GGG | + | chr4.4:33421254-33421273 | None:intergenic | 20.0% |
| !! | AATTTATTACTACATGCATT+GGG | + | chr4.4:33421101-33421120 | None:intergenic | 20.0% |
| !! | AATTTGTATTGTAGAAATTG+GGG | - | chr4.4:33420435-33420454 | MS.gene052354:intron | 20.0% |
| !! | CACTATTAAAAAGATAAACT+CGG | - | chr4.4:33420710-33420729 | MS.gene052354:intron | 20.0% |
| !! | CCAAAAAACAAAATAATGAA+AGG | + | chr4.4:33421964-33421983 | None:intergenic | 20.0% |
| !! | GTTATATGATCTAATTGAAT+AGG | - | chr4.4:33419802-33419821 | MS.gene052354:intron | 20.0% |
| !! | TGAAAAAACAACAATTAGAT+CGG | + | chr4.4:33419680-33419699 | None:intergenic | 20.0% |
| !! | TTACTCTGTTATTAACATAT+GGG | + | chr4.4:33421432-33421451 | None:intergenic | 20.0% |
| !!! | AGTATCTGAAATTAACATAT+GGG | + | chr4.4:33421344-33421363 | None:intergenic | 20.0% |
| !!! | ATATAAGGTTGAATGTTTTA+AGG | + | chr4.4:33422478-33422497 | None:intergenic | 20.0% |
| !!! | CCTTTCATTATTTTGTTTTT+TGG | - | chr4.4:33421961-33421980 | MS.gene052354:intron | 20.0% |
| !!! | TAAAAAATTATGATTTGTGC+AGG | + | chr4.4:33422962-33422981 | None:intergenic | 20.0% |
| !!! | TAGTATCTGAAATTAACATA+TGG | + | chr4.4:33421345-33421364 | None:intergenic | 20.0% |
| !!! | TGTATGTTGCTTATTATTTT+TGG | - | chr4.4:33423048-33423067 | MS.gene052354:intron | 20.0% |
| ! | AAACACGAAAAGATTAAAAC+AGG | + | chr4.4:33419649-33419668 | None:intergenic | 25.0% |
| ! | AAATTGAAACAGAAAGAAAG+AGG | + | chr4.4:33419626-33419645 | None:intergenic | 25.0% |
| ! | AACTCTTACTCTATTAATAG+TGG | - | chr4.4:33422353-33422372 | MS.gene052354:intron | 25.0% |
| ! | AATTGAAACAGAAAGAAAGA+GGG | + | chr4.4:33419625-33419644 | None:intergenic | 25.0% |
| ! | ACAAATAAATTAACGTGCTA+TGG | - | chr4.4:33421122-33421141 | MS.gene052354:intron | 25.0% |
| ! | ACAATCATCTCAAAACAAAA+AGG | + | chr4.4:33422548-33422567 | None:intergenic | 25.0% |
| ! | ACTAGTTAAGGAAACAAAAA+AGG | - | chr4.4:33422216-33422235 | MS.gene052354:intron | 25.0% |
| ! | AGCAAATCTTATGTTTAAAG+AGG | - | chr4.4:33421209-33421228 | MS.gene052354:intron | 25.0% |
| ! | ATAATAAAGTTGAACCAAAC+AGG | + | chr4.4:33422419-33422438 | None:intergenic | 25.0% |
| ! | ATTTGTATTGTAGAAATTGG+GGG | - | chr4.4:33420436-33420455 | MS.gene052354:intron | 25.0% |
| ! | CAATTTATTACTACATGCAT+TGG | + | chr4.4:33421102-33421121 | None:intergenic | 25.0% |
| ! | CTTACTCTGTTATTAACATA+TGG | + | chr4.4:33421433-33421452 | None:intergenic | 25.0% |
| ! | GAAAAAACAACAATTAGATC+GGG | + | chr4.4:33419679-33419698 | None:intergenic | 25.0% |
| ! | GTATCATTATTAAGATTCCA+AGG | - | chr4.4:33422682-33422701 | MS.gene052354:intron | 25.0% |
| ! | TATTATGCATAACTAAGCTT+TGG | - | chr4.4:33422433-33422452 | MS.gene052354:intron | 25.0% |
| ! | TTGAAAGGAAAATACTTTCT+GGG | - | chr4.4:33420280-33420299 | MS.gene052354:intron | 25.0% |
| !! | ATATAGGAGTAAGATGTTTT+TGG | - | chr4.4:33422505-33422524 | MS.gene052354:intron | 25.0% |
| !! | TCATTCACAGTTCATATTTT+GGG | - | chr4.4:33421581-33421600 | MS.gene052354:intron | 25.0% |
| !! | TTCATTCACAGTTCATATTT+TGG | - | chr4.4:33421580-33421599 | MS.gene052354:intron | 25.0% |
| !!! | AGCTTTATTGTGATTATGAT+GGG | - | chr4.4:33422636-33422655 | MS.gene052354:intron | 25.0% |
| !!! | ATGTGTGTTTGTTTTCATTT+GGG | - | chr4.4:33419865-33419884 | MS.gene052354:intron | 25.0% |
| !!! | CAGGCTATATATAACTTTTT+TGG | + | chr4.4:33422943-33422962 | None:intergenic | 25.0% |
| !!! | CTATTGATCTTTGAAACATT+CGG | - | chr4.4:33422070-33422089 | MS.gene052354:intron | 25.0% |
| !!! | GGTTTTGAAGATTTTCTAAA+TGG | - | chr4.4:33421926-33421945 | MS.gene052354:intron | 25.0% |
| !!! | TATGTGTGTTTGTTTTCATT+TGG | - | chr4.4:33419864-33419883 | MS.gene052354:intron | 25.0% |
| !!! | TTTAGTTTTAGCTATTGGAT+TGG | - | chr4.4:33422978-33422997 | MS.gene052354:intron | 25.0% |
| AACATTAACAACGTTGAGAA+AGG | + | chr4.4:33423120-33423139 | None:intergenic | 30.0% | |
| AACTACAATCTGATAGATAC+CGG | + | chr4.4:33422596-33422615 | None:intergenic | 30.0% | |
| AATGAAATTTCTACTAGGAG+TGG | + | chr4.4:33421566-33421585 | None:intergenic | 30.0% | |
| ACTCACTACTAATACAAACA+AGG | + | chr4.4:33420079-33420098 | None:intergenic | 30.0% | |
| AGTGAGTGTTTGAATTTGTA+TGG | - | chr4.4:33420092-33420111 | MS.gene052354:intron | 30.0% | |
| AGTGTTTGAATTTGTATGGT+AGG | - | chr4.4:33420096-33420115 | MS.gene052354:intron | 30.0% | |
| ATATGTTAATTTCAGTCACC+GGG | - | chr4.4:33421516-33421535 | MS.gene052354:intron | 30.0% | |
| ATATTACCATTGTTCCTTGT+AGG | - | chr4.4:33421828-33421847 | MS.gene052354:intron | 30.0% | |
| CATATGTTAATTTCAGTCAC+CGG | - | chr4.4:33421515-33421534 | MS.gene052354:intron | 30.0% | |
| CCATATCCATATGAAAGAAT+AGG | + | chr4.4:33421382-33421401 | None:intergenic | 30.0% | |
| CCTATTCTTTCATATGGATA+TGG | - | chr4.4:33421379-33421398 | MS.gene052354:intron | 30.0% | |
| CGAACACATTTCTTCATAAT+CGG | + | chr4.4:33420829-33420848 | None:intergenic | 30.0% | |
| CGCAATCTTTAACTATATCA+TGG | + | chr4.4:33423024-33423043 | None:intergenic | 30.0% | |
| CTGTGAATGAAATTTCTACT+AGG | + | chr4.4:33421571-33421590 | None:intergenic | 30.0% | |
| CTTGAAAGGAAAATACTTTC+TGG | - | chr4.4:33420279-33420298 | MS.gene052354:intron | 30.0% | |
| GACTGAAATTAACATATGGA+TGG | + | chr4.4:33421513-33421532 | None:intergenic | 30.0% | |
| TACAAATGGAACATAATTGC+AGG | + | chr4.4:33422665-33422684 | None:intergenic | 30.0% | |
| TACAAGGAACAATGGTAATA+TGG | + | chr4.4:33421829-33421848 | None:intergenic | 30.0% | |
| TATATAATACTTGGGTACAC+TGG | + | chr4.4:33423228-33423247 | None:intergenic | 30.0% | |
| TCAGATCCTATTCTTTCATA+TGG | - | chr4.4:33421373-33421392 | MS.gene052354:intron | 30.0% | |
| TCTCAAAACAAAAAGGAACT+TGG | + | chr4.4:33422541-33422560 | None:intergenic | 30.0% | |
| TGAATGTGAGTTAACTAACT+TGG | - | chr4.4:33420226-33420245 | MS.gene052354:intron | 30.0% | |
| ! | ACACTTTAAATTGATAACCG+TGG | - | chr4.4:33422715-33422734 | MS.gene052354:intron | 30.0% |
| ! | CTCTCTACTTGTTAAAAACA+AGG | + | chr4.4:33420409-33420428 | None:intergenic | 30.0% |
| ! | GCTTTATTGTGATTATGATG+GGG | - | chr4.4:33422637-33422656 | MS.gene052354:intron | 30.0% |
| ! | GTTAGAATTGTTTTCCTGTT+TGG | - | chr4.4:33422402-33422421 | MS.gene052354:intron | 30.0% |
| ! | TACTGTTCTTGTTTCCTTAA+GGG | - | chr4.4:33422278-33422297 | MS.gene052354:intron | 30.0% |
| ! | TCTTATGTTTAAAGAGGCAT+CGG | - | chr4.4:33421215-33421234 | MS.gene052354:intron | 30.0% |
| ! | TTACTGTTCTTGTTTCCTTA+AGG | - | chr4.4:33422277-33422296 | MS.gene052354:intron | 30.0% |
| ! | TTTTCCTAAATTCAAAACCC+TGG | + | chr4.4:33419735-33419754 | None:intergenic | 30.0% |
| !! | ACAGTTCATATTTTGGGTAA+TGG | - | chr4.4:33421587-33421606 | MS.gene052354:intron | 30.0% |
| !! | AGATTCATATGGATTTTGAC+CGG | + | chr4.4:33421466-33421485 | None:intergenic | 30.0% |
| !! | CAGTTCATATTTTGGGTAAT+GGG | - | chr4.4:33421588-33421607 | MS.gene052354:intron | 30.0% |
| !! | CTAGCGTTAATATTTTAAGC+AGG | - | chr4.4:33422898-33422917 | MS.gene052354:intron | 30.0% |
| !! | GAGCTTTATTGTGATTATGA+TGG | - | chr4.4:33422635-33422654 | MS.gene052354:intron | 30.0% |
| !!! | ATTTCCAGGGTTTTGAATTT+AGG | - | chr4.4:33419728-33419747 | MS.gene052354:intron | 30.0% |
| !!! | GCTTATTATTTTTGGCTCAT+TGG | - | chr4.4:33423056-33423075 | MS.gene052354:intron | 30.0% |
| !!! | TTCATTTGGGTGTTGTTTTT+AGG | - | chr4.4:33419878-33419897 | MS.gene052354:intron | 30.0% |
| AACCCCAATTATATCAAGCA+GGG | + | chr4.4:33422380-33422399 | None:intergenic | 35.0% | |
| AAGAAAGAGGGATTACAGAT+TGG | + | chr4.4:33419613-33419632 | None:intergenic | 35.0% | |
| AATGTTAACTAGTGCCCTTA+AGG | + | chr4.4:33422295-33422314 | None:intergenic | 35.0% | |
| AGATATCTCAACTGTGGTTA+TGG | + | chr4.4:33420502-33420521 | None:intergenic | 35.0% | |
| AGCTCATATATTGGGGAAAT+AGG | - | chr4.4:33420131-33420150 | MS.gene052354:intron | 35.0% | |
| AGGCAAATTCTTTCTAGGTA+CGG | - | chr4.4:33419984-33420003 | MS.gene052354:intron | 35.0% | |
| ATATGGGAAACCATATCCAA+CGG | + | chr4.4:33421328-33421347 | None:intergenic | 35.0% | |
| CAATGCAAAGTGAACTTGTA+TGG | - | chr4.4:33419930-33419949 | MS.gene052354:intron | 35.0% | |
| CGGTGACTGAAATTAACATA+TGG | + | chr4.4:33421517-33421536 | None:intergenic | 35.0% | |
| CTCTCAAGTCAAAGTTTACA+TGG | + | chr4.4:33420751-33420770 | None:intergenic | 35.0% | |
| GAATGCAAGCTAAATCATGT+TGG | - | chr4.4:33421631-33421650 | MS.gene052354:intron | 35.0% | |
| GCAAATCATCAAATCACATG+AGG | + | chr4.4:33421730-33421749 | None:intergenic | 35.0% | |
| GTAATTCCTTCTTCAATGCT+GGG | - | chr4.4:33421869-33421888 | MS.gene052354:intron | 35.0% | |
| GTGAGTTAACTAACTTGGTA+TGG | - | chr4.4:33420231-33420250 | MS.gene052354:intron | 35.0% | |
| GTTGGGTACTAAGATTCATA+TGG | + | chr4.4:33421477-33421496 | None:intergenic | 35.0% | |
| TAACCCCAATTATATCAAGC+AGG | + | chr4.4:33422381-33422400 | None:intergenic | 35.0% | |
| TACTGAATGAGGAACTTGAA+AGG | - | chr4.4:33420265-33420284 | MS.gene052354:intron | 35.0% | |
| TCAATCGCAGCTCATATATT+GGG | - | chr4.4:33420123-33420142 | MS.gene052354:intron | 35.0% | |
| TCATTCAGCAAAAGAAGCAA+CGG | + | chr4.4:33422166-33422185 | None:intergenic | 35.0% | |
| TTCAATCGCAGCTCATATAT+TGG | - | chr4.4:33420122-33420141 | MS.gene052354:intron | 35.0% | |
| TTGACAGGCAAATTCTTTCT+AGG | - | chr4.4:33419979-33419998 | MS.gene052354:intron | 35.0% | |
| TTTATTGCTAAGAGAGAGAG+TGG | - | chr4.4:33421785-33421804 | MS.gene052354:intron | 35.0% | |
| TTTGATGTTAGCGATTTCCA+GGG | - | chr4.4:33419715-33419734 | MS.gene052354:intron | 35.0% | |
| ! | AAAGTGTCATGTAAAGTCCT+TGG | + | chr4.4:33422702-33422721 | None:intergenic | 35.0% |
| ! | CACTGTGAAATCTGAGATAT+AGG | + | chr4.4:33420621-33420640 | None:intergenic | 35.0% |
| ! | TTTGAGACTCACAAATTGAC+AGG | + | chr4.4:33421190-33421209 | None:intergenic | 35.0% |
| ! | TTTTGATGTTAGCGATTTCC+AGG | - | chr4.4:33419714-33419733 | MS.gene052354:intron | 35.0% |
| !! | CCAAATCAAAGAGCTTTAGA+AGG | - | chr4.4:33420913-33420932 | MS.gene052354:intron | 35.0% |
| !! | CCTTCTAAAGCTCTTTGATT+TGG | + | chr4.4:33420916-33420935 | None:intergenic | 35.0% |
| !! | TATGTTAGACTCTGAAACCA+CGG | + | chr4.4:33422735-33422754 | None:intergenic | 35.0% |
| !! | TTTCAAGTTCCTCATTCAGT+AGG | + | chr4.4:33420266-33420285 | None:intergenic | 35.0% |
| !!! | ATTTTGGGTAATGGGAACAT+AGG | - | chr4.4:33421596-33421615 | MS.gene052354:intron | 35.0% |
| !!! | TGGGTGTTGTTTTTAGGTAA+GGG | - | chr4.4:33419884-33419903 | MS.gene052354:intron | 35.0% |
| !!! | TTGGGTGTTGTTTTTAGGTA+AGG | - | chr4.4:33419883-33419902 | MS.gene052354:intron | 35.0% |
| AAACAGCATATGACCAAACC+CGG | + | chr4.4:33421537-33421556 | None:intergenic | 40.0% | |
| AACATATGGATGGTCTCTTG+TGG | + | chr4.4:33421503-33421522 | None:intergenic | 40.0% | |
| AAGACCATTGCACACCAAAT+CGG | - | chr4.4:33419503-33419522 | MS.gene052354:CDS | 40.0% | |
| ACAGGAACTCTTGATCACTT+TGG | - | chr4.4:33421905-33421924 | MS.gene052354:intron | 40.0% | |
| ACATATGGATGGTCTCTTGT+GGG | + | chr4.4:33421502-33421521 | None:intergenic | 40.0% | |
| ACTTTCTGGGTACGAGTATT+TGG | - | chr4.4:33420293-33420312 | MS.gene052354:intron | 40.0% | |
| ATCTCAACTGTGGTTATGGA+AGG | + | chr4.4:33420498-33420517 | None:intergenic | 40.0% | |
| ATTGAAGAAGGAATTACCCC+TGG | + | chr4.4:33421866-33421885 | None:intergenic | 40.0% | |
| ATTGGAGAGATGATTCGAGA+GGG | + | chr4.4:33419595-33419614 | None:intergenic | 40.0% | |
| ATTGTGTCAGACTTCAGATC+AGG | - | chr4.4:33422563-33422582 | MS.gene052354:intron | 40.0% | |
| CAATCGCAGCTCATATATTG+GGG | - | chr4.4:33420124-33420143 | MS.gene052354:intron | 40.0% | |
| GAAAAGTCTCTGATTCACGA+GGG | + | chr4.4:33423152-33423171 | None:intergenic | 40.0% | |
| GGATGTAGATATCTCAACTG+TGG | + | chr4.4:33420508-33420527 | None:intergenic | 40.0% | |
| GGCAAATTCTTTCTAGGTAC+GGG | - | chr4.4:33419985-33420004 | MS.gene052354:intron | 40.0% | |
| GGTAATTCCTTCTTCAATGC+TGG | - | chr4.4:33421868-33421887 | MS.gene052354:intron | 40.0% | |
| GGTCCCTGCTTGATATAATT+GGG | - | chr4.4:33422374-33422393 | MS.gene052354:intron | 40.0% | |
| GTCATGCAAGACACTAGTTA+AGG | - | chr4.4:33422204-33422223 | MS.gene052354:intron | 40.0% | |
| GTCCCTGCTTGATATAATTG+GGG | - | chr4.4:33422375-33422394 | MS.gene052354:intron | 40.0% | |
| GTGTGGAAGAAGCTATGAAA+AGG | - | chr4.4:33419907-33419926 | MS.gene052354:intron | 40.0% | |
| GTGTTCGAATCAACATGCTT+AGG | - | chr4.4:33420842-33420861 | MS.gene052354:CDS | 40.0% | |
| GTTAACTAACAGCGCAATGT+TGG | - | chr4.4:33421693-33421712 | MS.gene052354:intron | 40.0% | |
| TGGGGAAATAGGACAAACAA+TGG | - | chr4.4:33420142-33420161 | MS.gene052354:intron | 40.0% | |
| TGGTCCCTGCTTGATATAAT+TGG | - | chr4.4:33422373-33422392 | MS.gene052354:intron | 40.0% | |
| TGTATTGTAGAAATTGGGGG+TGG | - | chr4.4:33420439-33420458 | MS.gene052354:intron | 40.0% | |
| TTAATTTCAGTCACCGGGTT+TGG | - | chr4.4:33421521-33421540 | MS.gene052354:intron | 40.0% | |
| TTCGAATCAACATGCTTAGG+TGG | - | chr4.4:33420845-33420864 | MS.gene052354:CDS | 40.0% | |
| ! | CTCGTGAATCAGAGACTTTT+CGG | - | chr4.4:33423151-33423170 | MS.gene052354:CDS | 40.0% |
| !! | AGCTGTTTTCCTACTGAATG+AGG | - | chr4.4:33420254-33420273 | MS.gene052354:intron | 40.0% |
| !! | ATGTGGCACTTTGTTGTTGT+TGG | - | chr4.4:33423080-33423099 | MS.gene052354:intron | 40.0% |
| !! | ATTGGTTCTGTCGTGAACTA+GGG | - | chr4.4:33422996-33423015 | MS.gene052354:intron | 40.0% |
| !! | CTTCAGATCAGGTATTGAAC+CGG | - | chr4.4:33422574-33422593 | MS.gene052354:intron | 40.0% |
| !!! | ATTTTTGGCTCATTGGCATG+TGG | - | chr4.4:33423063-33423082 | MS.gene052354:intron | 40.0% |
| !!! | GGGTGTTGTTTTTAGGTAAG+GGG | - | chr4.4:33419885-33419904 | MS.gene052354:intron | 40.0% |
| !!! | TTGTTTTTAGGTAAGGGGTG+TGG | - | chr4.4:33419890-33419909 | MS.gene052354:intron | 40.0% |
| AACGATGTCACTCTTGACAC+CGG | + | chr4.4:33419564-33419583 | None:intergenic | 45.0% | |
| AAGCAGTCGAGATGATTGTG+TGG | - | chr4.4:33420937-33420956 | MS.gene052354:intron | 45.0% | |
| AGAAATTGGGGGTGGATGAT+CGG | - | chr4.4:33420447-33420466 | MS.gene052354:intron | 45.0% | |
| AGTTCGCCTTGGTCTATCTA+AGG | - | chr4.4:33423200-33423219 | MS.gene052354:CDS | 45.0% | |
| CAATCCACATTCCAAACGGA+CGG | + | chr4.4:33420535-33420554 | None:intergenic | 45.0% | |
| CACACCGATGTTCTTCGTTT+CGG | - | chr4.4:33419533-33419552 | MS.gene052354:CDS | 45.0% | |
| CGAAAAGTCTCTGATTCACG+AGG | + | chr4.4:33423153-33423172 | None:intergenic | 45.0% | |
| CGACCAATCCACATTCCAAA+CGG | + | chr4.4:33420539-33420558 | None:intergenic | 45.0% | |
| CTGGAACCTACAAGGAACAA+TGG | + | chr4.4:33421837-33421856 | None:intergenic | 45.0% | |
| GAGTCCGAAACGAAGAACAT+CGG | + | chr4.4:33419540-33419559 | None:intergenic | 45.0% | |
| GATTGGAGAGATGATTCGAG+AGG | + | chr4.4:33419596-33419615 | None:intergenic | 45.0% | |
| GTTCGCCTTGGTCTATCTAA+GGG | - | chr4.4:33423201-33423220 | MS.gene052354:CDS | 45.0% | |
| TCCTTCTTCAATGCTGGGTT+TGG | - | chr4.4:33421874-33421893 | MS.gene052354:intron | 45.0% | |
| TGACTCAAGCTCAAGAGTAG+AGG | + | chr4.4:33421005-33421024 | None:intergenic | 45.0% | |
| TTGTTCCTTGTAGGTTCCAG+AGG | - | chr4.4:33421837-33421856 | MS.gene052354:intron | 45.0% | |
| ! | ATCAGAGACTTTTCGGCCAT+TGG | - | chr4.4:33423158-33423177 | MS.gene052354:CDS | 45.0% |
| ! | ATGGTCTCTTGTGGGTTGTT+GGG | + | chr4.4:33421494-33421513 | None:intergenic | 45.0% |
| ! | TCCAAACCCAGCATTGAAGA+AGG | + | chr4.4:33421878-33421897 | None:intergenic | 45.0% |
| !! | CGTTTGGAATGTGGATTGGT+CGG | - | chr4.4:33420537-33420556 | MS.gene052354:intron | 45.0% |
| !! | GATTGGTTCTGTCGTGAACT+AGG | - | chr4.4:33422995-33423014 | MS.gene052354:intron | 45.0% |
| !! | GTTTGGAATGTGGATTGGTC+GGG | - | chr4.4:33420538-33420557 | MS.gene052354:intron | 45.0% |
| ACATTCCAAACGGACGGTGA+TGG | + | chr4.4:33420529-33420548 | None:intergenic | 50.0% | |
| ACCATTGCACACCAAATCGG+AGG | - | chr4.4:33419506-33419525 | MS.gene052354:CDS | 50.0% | |
| ACGATGTCACTCTTGACACC+GGG | + | chr4.4:33419563-33419582 | None:intergenic | 50.0% | |
| ACTAACAGCGCAATGTTGGC+TGG | - | chr4.4:33421697-33421716 | MS.gene052354:intron | 50.0% | |
| ATTCCGTGGTGCATGTCCAA+TGG | + | chr4.4:33423177-33423196 | None:intergenic | 50.0% | |
| ATTGGACATGCACCACGGAA+TGG | - | chr4.4:33423176-33423195 | MS.gene052354:CDS | 50.0% | |
| CACTCAAGGAGGAACTTGAC+AGG | - | chr4.4:33419964-33419983 | MS.gene052354:intron | 50.0% | |
| CAGAGTAAGAATAGCAGCGC+CGG | - | chr4.4:33421444-33421463 | MS.gene052354:intron | 50.0% | |
| CGAAACGAAGAACATCGGTG+TGG | + | chr4.4:33419535-33419554 | None:intergenic | 50.0% | |
| CTGGGTTTGGAGACTGTTAC+AGG | - | chr4.4:33421887-33421906 | MS.gene052354:intron | 50.0% | |
| CTGGTCCCTTAGATAGACCA+AGG | + | chr4.4:33423209-33423228 | None:intergenic | 50.0% | |
| CTGTCAAGTTCCTCCTTGAG+TGG | + | chr4.4:33419966-33419985 | None:intergenic | 50.0% | |
| GAAGAAGGAATTACCCCTGG+AGG | + | chr4.4:33421863-33421882 | None:intergenic | 50.0% | |
| GGTGTCAAGAGTGACATCGT+TGG | - | chr4.4:33419563-33419582 | MS.gene052354:CDS | 50.0% | |
| TACATCCATCACCGTCCGTT+TGG | - | chr4.4:33420521-33420540 | MS.gene052354:intron | 50.0% | |
| TCGAGATGATTGTGTGGCAG+TGG | - | chr4.4:33420943-33420962 | MS.gene052354:intron | 50.0% | |
| TGGATATGGTTGTCGCGCAT+CGG | - | chr4.4:33421393-33421412 | MS.gene052354:intron | 50.0% | |
| TGTGGCAGTGGCAAGTATTC+TGG | - | chr4.4:33420955-33420974 | MS.gene052354:intron | 50.0% | |
| ! | ATCACCGTCCGTTTGGAATG+TGG | - | chr4.4:33420528-33420547 | MS.gene052354:intron | 50.0% |
| ! | CGTCCGTTTGGAATGTGGAT+TGG | - | chr4.4:33420533-33420552 | MS.gene052354:intron | 50.0% |
| ! | GATGGTCTCTTGTGGGTTGT+TGG | + | chr4.4:33421495-33421514 | None:intergenic | 50.0% |
| !! | ACCTCCGATTTGGTGTGCAA+TGG | + | chr4.4:33419510-33419529 | None:intergenic | 50.0% |
| !! | TGTCGCGCATCGGTTGAATA+TGG | - | chr4.4:33421403-33421422 | MS.gene052354:intron | 50.0% |
| !!! | AGCTGCTTTTCCACTCAAGG+AGG | - | chr4.4:33419953-33419972 | MS.gene052354:intron | 50.0% |
| !!! | TGGAGCTGCTTTTCCACTCA+AGG | - | chr4.4:33419950-33419969 | MS.gene052354:intron | 50.0% |
| AGCAGCGCATCCGTTGGATA+TGG | - | chr4.4:33421315-33421334 | MS.gene052354:intron | 55.0% | |
| ATTGGGGGTGGATGATCGGT+TGG | - | chr4.4:33420451-33420470 | MS.gene052354:intron | 55.0% | |
| CAACGGATGCGCTGCTATTC+TGG | + | chr4.4:33421311-33421330 | None:intergenic | 55.0% | |
| CAAGGCGAACTTCCATTCCG+TGG | + | chr4.4:33423191-33423210 | None:intergenic | 55.0% | |
| CACGGAATGGAAGTTCGCCT+TGG | - | chr4.4:33423189-33423208 | MS.gene052354:CDS | 55.0% | |
| CAGAATAGCAGCGCATCCGT+TGG | - | chr4.4:33421309-33421328 | MS.gene052354:intron | 55.0% | |
| CGATGTCACTCTTGACACCG+GGG | + | chr4.4:33419562-33419581 | None:intergenic | 55.0% | |
| GTTCTTCGTTTCGGACTCCC+CGG | - | chr4.4:33419542-33419561 | MS.gene052354:CDS | 55.0% | |
| !! | AATGTGGATTGGTCGGGTCG+TGG | - | chr4.4:33420544-33420563 | MS.gene052354:intron | 55.0% |
| !! | CGTGGATTGGTTGGGCTTTC+AGG | - | chr4.4:33420562-33420581 | MS.gene052354:intron | 55.0% |
| CGGCCATTGGACATGCACCA+CGG | - | chr4.4:33423171-33423190 | MS.gene052354:CDS | 60.0% | |
| CGGTGTGGACACCTCCGATT+TGG | + | chr4.4:33419520-33419539 | None:intergenic | 60.0% | |
| GAATTACCCCTGGAGGCCTC+TGG | + | chr4.4:33421856-33421875 | None:intergenic | 60.0% | |
| GTAGGTTCCAGAGGCCTCCA+GGG | - | chr4.4:33421846-33421865 | MS.gene052354:intron | 60.0% | |
| TAGGTTCCAGAGGCCTCCAG+GGG | - | chr4.4:33421847-33421866 | MS.gene052354:intron | 60.0% | |
| TGTAGGTTCCAGAGGCCTCC+AGG | - | chr4.4:33421845-33421864 | MS.gene052354:intron | 60.0% | |
| ! | ACAGCGCAATGTTGGCTGGC+TGG | - | chr4.4:33421701-33421720 | MS.gene052354:intron | 60.0% |
| !! | GGAGGCCTCTGGAACCTACA+AGG | + | chr4.4:33421845-33421864 | None:intergenic | 60.0% |
| !! | GGATTGGTCGGGTCGTGGAT+TGG | - | chr4.4:33420549-33420568 | MS.gene052354:intron | 60.0% |
| !! | GGTCGGGTCGTGGATTGGTT+GGG | - | chr4.4:33420554-33420573 | MS.gene052354:intron | 60.0% |
| !! | TGGTCGGGTCGTGGATTGGT+TGG | - | chr4.4:33420553-33420572 | MS.gene052354:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 33419488 | 33423248 | 33419488 | ID=MS.gene052354 |
| chr4.4 | mRNA | 33419488 | 33423248 | 33419488 | ID=MS.gene052354.t1;Parent=MS.gene052354 |
| chr4.4 | exon | 33423120 | 33423248 | 33423120 | ID=MS.gene052354.t1.exon1;Parent=MS.gene052354.t1 |
| chr4.4 | CDS | 33423120 | 33423248 | 33423120 | ID=cds.MS.gene052354.t1;Parent=MS.gene052354.t1 |
| chr4.4 | exon | 33422736 | 33422836 | 33422736 | ID=MS.gene052354.t1.exon2;Parent=MS.gene052354.t1 |
| chr4.4 | CDS | 33422736 | 33422836 | 33422736 | ID=cds.MS.gene052354.t1;Parent=MS.gene052354.t1 |
| chr4.4 | exon | 33420789 | 33420886 | 33420789 | ID=MS.gene052354.t1.exon3;Parent=MS.gene052354.t1 |
| chr4.4 | CDS | 33420789 | 33420886 | 33420789 | ID=cds.MS.gene052354.t1;Parent=MS.gene052354.t1 |
| chr4.4 | exon | 33419488 | 33419588 | 33419488 | ID=MS.gene052354.t1.exon4;Parent=MS.gene052354.t1 |
| chr4.4 | CDS | 33419488 | 33419588 | 33419488 | ID=cds.MS.gene052354.t1;Parent=MS.gene052354.t1 |
| Gene Sequence |
| Protein sequence |
