AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002547

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002547.t1 MTR_2g015500 96.708 243 8 0 1 243 1 243 3.08e-180 494
MS.gene002547.t1 MTR_2g015510 84.298 242 36 1 2 243 3 242 3.81e-156 433
MS.gene002547.t1 MTR_2g015480 67.249 229 58 4 12 239 65 277 2.09e-98 290
MS.gene002547.t1 MTR_4g105680 45.249 221 112 2 25 242 51 265 5.05e-58 185
MS.gene002547.t1 MTR_7g068550 41.981 212 113 3 4 215 6 207 4.49e-54 175
MS.gene002547.t1 MTR_4g016510 38.136 236 134 4 4 235 6 233 1.09e-51 169
MS.gene002547.t1 MTR_7g068530 38.075 239 134 4 4 238 6 234 1.80e-50 165
MS.gene002547.t1 MTR_7g068460 38.318 214 122 4 2 215 31 234 1.25e-47 159
MS.gene002547.t1 MTR_7g068500 37.850 214 123 4 2 215 30 233 6.79e-46 154
MS.gene002547.t1 MTR_7g068470 36.620 213 123 6 4 215 2 203 8.21e-44 148
MS.gene002547.t1 MTR_7g068450 34.694 245 140 5 4 239 2 235 1.45e-43 148
MS.gene002547.t1 MTR_7g068470 37.089 213 118 7 4 215 2 199 2.38e-43 147
MS.gene002547.t1 MTR_3g070460 36.449 214 124 5 4 215 6 209 1.60e-42 145
MS.gene002547.t1 MTR_4g016500 32.484 157 65 5 33 189 277 392 4.11e-18 83.2
MS.gene002547.t1 MTR_7g068520 50.847 59 28 1 4 62 3 60 2.28e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002547.t1 AT5G45920 68.880 241 68 2 4 242 3 238 2.57e-122 348
MS.gene002547.t1 AT5G45920 68.880 241 68 2 4 242 3 238 2.57e-122 348
MS.gene002547.t1 AT5G45920 72.043 186 45 2 4 187 3 183 1.90e-96 280
MS.gene002547.t1 AT5G45920 72.043 186 45 2 4 187 3 183 1.90e-96 280
MS.gene002547.t1 AT5G62930 52.066 242 107 2 4 242 2 237 2.21e-83 249
MS.gene002547.t1 AT5G62930 52.066 242 107 2 4 242 28 263 7.88e-83 248
MS.gene002547.t1 AT5G62930 49.438 178 87 1 68 242 2 179 8.00e-54 172
MS.gene002547.t1 AT2G38180 38.627 233 129 4 4 232 6 228 9.91e-48 160
MS.gene002547.t1 AT3G11210 35.246 244 139 6 4 241 6 236 1.57e-45 153

Find 67 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTACAGAAATGCCTTTA+AGG 0.118994 2.1:-69965372 None:intergenic
GCAGCTTCATTAGTCCTTTC+AGG 0.209931 2.1:-69964844 None:intergenic
TGACCCTAATGACCCCTTAA+AGG 0.261070 2.1:+69965358 MS.gene002547:CDS
GTCAGGGAACTGTTGCATTT+TGG 0.294369 2.1:-69964935 None:intergenic
CTCCATTGTCTCCTTCTTCA+AGG 0.304012 2.1:+69963548 MS.gene002547:CDS
AATGCCTTTAAGGGGTCATT+AGG 0.307170 2.1:-69965362 None:intergenic
TCCTTTGATGTTGGAGGATG+GGG 0.334235 2.1:+69962783 MS.gene002547:CDS
TACTACAGAAATGCCTTTAA+GGG 0.399937 2.1:-69965371 None:intergenic
CAAAGCAATCGGAGCAGTTT+CGG 0.402911 2.1:-69963433 None:intergenic
ATGCCTTTAAGGGGTCATTA+GGG 0.414468 2.1:-69965361 None:intergenic
GTCCTTTCAGGAAGACCCTC+TGG 0.415276 2.1:-69964832 None:intergenic
CTGTCACCGCCCTGTGACAC+AGG 0.417724 2.1:-69963405 None:intergenic
CCCTCTGGATTATTCTCAAA+TGG 0.419053 2.1:-69964817 None:intergenic
TTCTTTCAAACATGACTAAG+AGG 0.439390 2.1:+69962721 None:intergenic
ATATTCCTTACATTGATCTC+TGG 0.444800 2.1:+69964911 MS.gene002547:CDS
GAGTCGTGCAACTTCATCAA+TGG 0.457432 2.1:-69964658 None:intergenic
TTGAAAAGCAGAGCATCTAC+TGG 0.476943 2.1:-69963490 None:intergenic
ATCCTTTGATGTTGGAGGAT+GGG 0.480890 2.1:+69962782 MS.gene002547:CDS
AAATGCAACAGTTCCCTGAC+TGG 0.492869 2.1:+69964938 MS.gene002547:CDS
ATGAGGATGACTTTACTTGT+CGG 0.494758 2.1:-69964624 None:intergenic
AGTCGTGCAACTTCATCAAT+GGG 0.507323 2.1:-69964657 None:intergenic
AAGAAAACAGTCAAAGCAAT+CGG 0.513354 2.1:-69963444 None:intergenic
CAGGCAGATGTGGTGCTAAG+AGG 0.513358 2.1:+69963330 MS.gene002547:intron
ACTGAGGAATCCTTTGATGT+TGG 0.516117 2.1:+69962774 MS.gene002547:CDS
AGGCAGATGTGGTGCTAAGA+GGG 0.519656 2.1:+69963331 MS.gene002547:intron
CAACACGAGGTGGGCACTGA+AGG 0.520803 2.1:+69963365 MS.gene002547:CDS
TTGATGAAGTTGCACGACTC+AGG 0.521821 2.1:+69964661 MS.gene002547:CDS
CAATGGGAGGAGGAGTTATG+AGG 0.526221 2.1:-69964641 None:intergenic
AATCCTTTGATGTTGGAGGA+TGG 0.530232 2.1:+69962781 MS.gene002547:CDS
TTGGTCCAGAGATCAATGTA+AGG 0.532044 2.1:-69964916 None:intergenic
GAGGAATCCTTTGATGTTGG+AGG 0.547556 2.1:+69962777 MS.gene002547:CDS
TTCTCCTTGTATTCATGTAG+AGG 0.550295 2.1:-69963519 None:intergenic
ATCCAGAGGGTCTTCCTGAA+AGG 0.553423 2.1:+69964830 MS.gene002547:CDS
GTGTCACAGGGCGGTGACAG+TGG 0.555563 2.1:+69963408 MS.gene002547:CDS
GTGGTGCTAAGAGGGTATAG+TGG 0.556252 2.1:+69963339 MS.gene002547:CDS
TAGGGTCAATATCAGATACA+AGG 0.556300 2.1:-69965343 None:intergenic
CCTTTGAATTTCAGAAGCGA+TGG 0.564667 2.1:+69964601 MS.gene002547:intron
ACCCCATCCTCCAACATCAA+AGG 0.571101 2.1:-69962784 None:intergenic
TCTCCTTGTATTCATGTAGA+GGG 0.573844 2.1:-69963518 None:intergenic
TGCCAACTATTTCTCACGCA+CGG 0.583852 2.1:+69962815 MS.gene002547:CDS
TACCGTGCGTGAGAAATAGT+TGG 0.585214 2.1:-69962817 None:intergenic
TGTCCCTCTACATGAATACA+AGG 0.587200 2.1:+69963515 MS.gene002547:CDS
GGTATGGGTTACCTTGAAGA+AGG 0.588405 2.1:-69963559 None:intergenic
TGGTGCTAAGAGGGTATAGT+GGG 0.591667 2.1:+69963340 MS.gene002547:CDS
GAAAGGACTAATGAAGCTGC+TGG 0.598460 2.1:+69964847 MS.gene002547:CDS
GACGGTTTGCATCTAACTAA+CGG 0.606195 2.1:+69965236 MS.gene002547:CDS
GCAACTTCATCAATGGGAGG+AGG 0.607044 2.1:-69964651 None:intergenic
ACTACAGAAATGCCTTTAAG+GGG 0.608956 2.1:-69965370 None:intergenic
TGAAAAGCAGAGCATCTACT+GGG 0.610569 2.1:-69963489 None:intergenic
TACCTTGAAGAAGGAGACAA+TGG 0.615115 2.1:-69963550 None:intergenic
AGGGTCAATATCAGATACAA+GGG 0.620846 2.1:-69965342 None:intergenic
AGAAGGAGACAATGGAGCAA+AGG 0.621194 2.1:-69963542 None:intergenic
GAGGTGGGCACTGAAGGTGT+TGG 0.628300 2.1:+69963371 MS.gene002547:CDS
GTAAGGAATATGACATTCAG+TGG 0.633665 2.1:-69964899 None:intergenic
CCATTTGAGAATAATCCAGA+GGG 0.637647 2.1:+69964817 MS.gene002547:CDS
TGTCACCGCCCTGTGACACA+GGG 0.639199 2.1:-69963404 None:intergenic
TGCTAGAGCATGCATTGCTG+TGG 0.657710 2.1:+69964876 MS.gene002547:CDS
GGGTCAATATCAGATACAAG+GGG 0.659677 2.1:-69965341 None:intergenic
TAACATGTAACAGGCAGATG+TGG 0.662178 2.1:+69963320 MS.gene002547:intron
GTTTGCATCTAACTAACGGA+GGG 0.673924 2.1:+69965240 MS.gene002547:CDS
TCCATTTGAGAATAATCCAG+AGG 0.677789 2.1:+69964816 MS.gene002547:CDS
CGTGCAACTTCATCAATGGG+AGG 0.679277 2.1:-69964654 None:intergenic
GGTATAGTGGGTACAACACG+AGG 0.696277 2.1:+69963352 MS.gene002547:CDS
TAGTGGGTACAACACGAGGT+GGG 0.715177 2.1:+69963356 MS.gene002547:CDS
GGTTTGCATCTAACTAACGG+AGG 0.720069 2.1:+69965239 MS.gene002547:CDS
ATAGTGGGTACAACACGAGG+TGG 0.732833 2.1:+69963355 MS.gene002547:CDS
GGTCAATATCAGATACAAGG+GGG 0.748357 2.1:-69965340 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATCATATTACAATT+TGG - chr2.1:69962975-69962994 None:intergenic 10.0%
!! AATAAATCATATTACAATTT+GGG - chr2.1:69962974-69962993 None:intergenic 10.0%
!!! ATATTTTTAATTTCAATTCT+AGG + chr2.1:69964540-69964559 MS.gene002547:intron 10.0%
!! ATATCATTATTTAATGCATA+TGG + chr2.1:69965169-69965188 MS.gene002547:intron 15.0%
!! GAATAAAATTAGAGTTTAAT+GGG + chr2.1:69963594-69963613 MS.gene002547:intron 15.0%
!! TATAAACAAAACATATAATG+TGG - chr2.1:69962914-69962933 None:intergenic 15.0%
!! TATGATTTGATATGAATATA+CGG + chr2.1:69965192-69965211 MS.gene002547:intron 15.0%
!! TGAATAAAATTAGAGTTTAA+TGG + chr2.1:69963593-69963612 MS.gene002547:intron 15.0%
!! TTAAACATATAATTCTATAG+AGG + chr2.1:69964752-69964771 MS.gene002547:intron 15.0%
!! AAAATCTAAAAACAGAATGT+GGG - chr2.1:69963230-69963249 None:intergenic 20.0%
!! AATTATACCATTTATACAAG+AGG - chr2.1:69964566-69964585 None:intergenic 20.0%
!! ACTGGAAAAAAGTTTATTTA+AGG + chr2.1:69964956-69964975 MS.gene002547:CDS 20.0%
!! TAAAATCTAAAAACAGAATG+TGG - chr2.1:69963231-69963250 None:intergenic 20.0%
!! TATACCTACATATACATTTA+AGG - chr2.1:69964505-69964524 None:intergenic 20.0%
!! TTATCCTTAAATGTATATGT+AGG + chr2.1:69964498-69964517 MS.gene002547:intron 20.0%
!!! AAGTTTGAATCTTTTTGTAA+TGG + chr2.1:69963256-69963275 MS.gene002547:intron 20.0%
!!! AATTTTATTCAAACTCTGTA+CGG - chr2.1:69963584-69963603 None:intergenic 20.0%
!!! AGTTTGAATCTTTTTGTAAT+GGG + chr2.1:69963257-69963276 MS.gene002547:intron 20.0%
! AAAGAACAATGATCCTTTAT+TGG - chr2.1:69963678-69963697 None:intergenic 25.0%
! AAGAACAATGATCCTTTATT+GGG - chr2.1:69963677-69963696 None:intergenic 25.0%
! AATTATGTTATCAGTTGGTT+TGG + chr2.1:69964281-69964300 MS.gene002547:intron 25.0%
! AATTTGGAGGTTAATACAAT+AGG + chr2.1:69964022-69964041 MS.gene002547:intron 25.0%
! ATCTTTGATCCTTAAAGAAA+GGG - chr2.1:69964388-69964407 None:intergenic 25.0%
! TATCTTTGATCCTTAAAGAA+AGG - chr2.1:69964389-69964408 None:intergenic 25.0%
! TATTATTGATCATACAGTAG+TGG - chr2.1:69964077-69964096 None:intergenic 25.0%
! TCACCAAAAAGATATATTTG+TGG - chr2.1:69962747-69962766 None:intergenic 25.0%
! TCTGCTTATAACATTCTTAA+AGG + chr2.1:69964409-69964428 MS.gene002547:intron 25.0%
! TTATAATGTTTGTAAAGCTG+TGG + chr2.1:69963937-69963956 MS.gene002547:intron 25.0%
!! ATTTTATTCAAACTCTGTAC+GGG - chr2.1:69963583-69963602 None:intergenic 25.0%
!! GTTTGAATCTTTTTGTAATG+GGG + chr2.1:69963258-69963277 MS.gene002547:intron 25.0%
!! TTTACCTTCTTTGTTTATCT+TGG + chr2.1:69964991-69965010 MS.gene002547:intron 25.0%
!!! AAAATAGTTTTGATCTCTTG+TGG + chr2.1:69963731-69963750 MS.gene002547:intron 25.0%
!!! AAATAAACTTTTTTCCAGTC+AGG - chr2.1:69964955-69964974 None:intergenic 25.0%
!!! AATAAACTTTTTTCCAGTCA+GGG - chr2.1:69964954-69964973 None:intergenic 25.0%
!!! TCTTTTGAAAAGGATAAATG+AGG + chr2.1:69963289-69963308 MS.gene002547:intron 25.0%
AAAGCAAAACAAAGCAAGAA+TGG - chr2.1:69962847-69962866 None:intergenic 30.0%
AAAGGATCATTGTTCTTTAG+TGG + chr2.1:69963680-69963699 MS.gene002547:intron 30.0%
AACTGATAACATAATTGCAC+AGG - chr2.1:69964277-69964296 None:intergenic 30.0%
AAGAAAACAGTCAAAGCAAT+CGG - chr2.1:69963447-69963466 None:intergenic 30.0%
ACAATAGGTGATGTTAAATG+TGG + chr2.1:69964037-69964056 MS.gene002547:intron 30.0%
ATAAAAAAGCTGAGAGATGA+AGG + chr2.1:69965287-69965306 MS.gene002547:CDS 30.0%
ATATTCCTTACATTGATCTC+TGG + chr2.1:69964911-69964930 MS.gene002547:CDS 30.0%
ATGAACATTGATCAACCTAT+GGG - chr2.1:69964459-69964478 None:intergenic 30.0%
CACATTCTAATAATGTTGCA+TGG + chr2.1:69963860-69963879 MS.gene002547:intron 30.0%
CATAACTCAAGTCACATATA+TGG - chr2.1:69965112-69965131 None:intergenic 30.0%
GTTGACATTGAGTTTATAAG+TGG + chr2.1:69963023-69963042 MS.gene002547:intron 30.0%
GTTTGTTTGTAACATGTAAC+AGG + chr2.1:69963311-69963330 MS.gene002547:intron 30.0%
TAAGCCAAGATAAACAAAGA+AGG - chr2.1:69964998-69965017 None:intergenic 30.0%
TGTGCAATTATGTTATCAGT+TGG + chr2.1:69964276-69964295 MS.gene002547:intron 30.0%
! AGGCCACAAATATATCTTTT+TGG + chr2.1:69962741-69962760 MS.gene002547:CDS 30.0%
! ATTGCTTTGACTGTTTTCTT+TGG + chr2.1:69963447-69963466 MS.gene002547:CDS 30.0%
! TTGCTTTGACTGTTTTCTTT+GGG + chr2.1:69963448-69963467 MS.gene002547:CDS 30.0%
! TTTATTAGTCTCATCGTGTT+AGG + chr2.1:69962943-69962962 MS.gene002547:intron 30.0%
!! GGTTTGTGTTTCTTTTGAAA+AGG + chr2.1:69963279-69963298 MS.gene002547:intron 30.0%
!!! AAGTTTTTTTTACACTTGCG+TGG + chr2.1:69964433-69964452 MS.gene002547:intron 30.0%
AAGAATGGTCCCTTTCTTTA+AGG + chr2.1:69964376-69964395 MS.gene002547:intron 35.0%
AAGCATGGAATCAAACTCTT+TGG - chr2.1:69964106-69964125 None:intergenic 35.0%
ACTGTGTTGAAACCCAATAA+AGG + chr2.1:69963662-69963681 MS.gene002547:intron 35.0%
AGGGTCAATATCAGATACAA+GGG - chr2.1:69965345-69965364 None:intergenic 35.0%
AGTAATGGCACAAAGAAAGA+AGG - chr2.1:69964249-69964268 None:intergenic 35.0%
AGTGTCTGATCTTGATCAAA+CGG + chr2.1:69963141-69963160 MS.gene002547:intron 35.0%
ATGAGGATGACTTTACTTGT+CGG - chr2.1:69964627-69964646 None:intergenic 35.0%
ATTCATTGGAATCACGCATT+CGG + chr2.1:69963064-69963083 MS.gene002547:intron 35.0%
CATGAACATTGATCAACCTA+TGG - chr2.1:69964460-69964479 None:intergenic 35.0%
CCATTTGAGAATAATCCAGA+GGG + chr2.1:69964817-69964836 MS.gene002547:CDS 35.0%
GAGTTTATAAGTGGTGAAAC+TGG + chr2.1:69963032-69963051 MS.gene002547:intron 35.0%
GTAAGGAATATGACATTCAG+TGG - chr2.1:69964902-69964921 None:intergenic 35.0%
TAGGGTCAATATCAGATACA+AGG - chr2.1:69965346-69965365 None:intergenic 35.0%
TCATGTGAGCTGTTAAGTAT+AGG + chr2.1:69964306-69964325 MS.gene002547:intron 35.0%
TCCATTTGAGAATAATCCAG+AGG + chr2.1:69964816-69964835 MS.gene002547:CDS 35.0%
TCTCCTTGTATTCATGTAGA+GGG - chr2.1:69963521-69963540 None:intergenic 35.0%
TGGATTTGATAAGTGTGCTT+TGG + chr2.1:69963751-69963770 MS.gene002547:intron 35.0%
TTCTAGGCCTCTTGTATAAA+TGG + chr2.1:69964556-69964575 MS.gene002547:intron 35.0%
TTCTCCTTGTATTCATGTAG+AGG - chr2.1:69963522-69963541 None:intergenic 35.0%
! AGAAAGAAGGCATGATGTTT+AGG - chr2.1:69964236-69964255 None:intergenic 35.0%
! TCTTTCTTTGTGCCATTACT+TGG + chr2.1:69964249-69964268 MS.gene002547:intron 35.0%
! TGCTTTGACTGTTTTCTTTG+GGG + chr2.1:69963449-69963468 MS.gene002547:CDS 35.0%
! TTGATTCCATGCTTTTCTGT+GGG + chr2.1:69964112-69964131 MS.gene002547:intron 35.0%
! TTTGATTCCATGCTTTTCTG+TGG + chr2.1:69964111-69964130 MS.gene002547:intron 35.0%
!! CGACTCAGGTATTGTTTTAT+TGG + chr2.1:69964675-69964694 MS.gene002547:intron 35.0%
AATCCTTTGATGTTGGAGGA+TGG + chr2.1:69962781-69962800 MS.gene002547:CDS 40.0%
AATGGGTATGCACACAATGA+GGG + chr2.1:69963611-69963630 MS.gene002547:intron 40.0%
ACTGAGGAATCCTTTGATGT+TGG + chr2.1:69962774-69962793 MS.gene002547:CDS 40.0%
ACTGGATTCCATGCATTCAT+TGG + chr2.1:69963050-69963069 MS.gene002547:intron 40.0%
AGTCGTGCAACTTCATCAAT+GGG - chr2.1:69964660-69964679 None:intergenic 40.0%
ATAGGCATGCATGTTAGCAA+TGG + chr2.1:69964324-69964343 MS.gene002547:intron 40.0%
ATCCTTTGATGTTGGAGGAT+GGG + chr2.1:69962782-69962801 MS.gene002547:CDS 40.0%
ATTCAAACTCTGTACGGGTA+TGG - chr2.1:69963578-69963597 None:intergenic 40.0%
ATTGCACAGGAACCAAGTAA+TGG - chr2.1:69964264-69964283 None:intergenic 40.0%
CAAATTCCTGAAATCCCACA+GGG - chr2.1:69964008-69964027 None:intergenic 40.0%
CCCTCTGGATTATTCTCAAA+TGG - chr2.1:69964820-69964839 None:intergenic 40.0%
CCTTTGAATTTCAGAAGCGA+TGG + chr2.1:69964601-69964620 MS.gene002547:intron 40.0%
CTCAAATTGTCGACCACTTA+TGG - chr2.1:69963197-69963216 None:intergenic 40.0%
GACGGTTTGCATCTAACTAA+CGG + chr2.1:69965236-69965255 MS.gene002547:CDS 40.0%
GAGAACGAAAAGTTTCTCTC+TGG + chr2.1:69963912-69963931 MS.gene002547:intron 40.0%
GGAAAACCAACCTCTACTTT+AGG + chr2.1:69964348-69964367 MS.gene002547:intron 40.0%
GGGTCAATATCAGATACAAG+GGG - chr2.1:69965344-69965363 None:intergenic 40.0%
GGTCAATATCAGATACAAGG+GGG - chr2.1:69965343-69965362 None:intergenic 40.0%
GTACGAGATGCTTGTGTAAA+AGG + chr2.1:69964145-69964164 MS.gene002547:intron 40.0%
GTGATGTTAAATGTGGACTC+TGG + chr2.1:69964044-69964063 MS.gene002547:intron 40.0%
GTTTGCATCTAACTAACGGA+GGG + chr2.1:69965240-69965259 MS.gene002547:CDS 40.0%
TAACATGTAACAGGCAGATG+TGG + chr2.1:69963320-69963339 MS.gene002547:intron 40.0%
TACCTTGAAGAAGGAGACAA+TGG - chr2.1:69963553-69963572 None:intergenic 40.0%
TAGGCATGCATGTTAGCAAT+GGG + chr2.1:69964325-69964344 MS.gene002547:intron 40.0%
TGTCCCTCTACATGAATACA+AGG + chr2.1:69963515-69963534 MS.gene002547:CDS 40.0%
TGTTTACCGAAATGCAGTGA+CGG + chr2.1:69965218-69965237 MS.gene002547:intron 40.0%
TTCAAACTCTGTACGGGTAT+GGG - chr2.1:69963577-69963596 None:intergenic 40.0%
TTCATTGGAATCACGCATTC+GGG + chr2.1:69963065-69963084 MS.gene002547:intron 40.0%
TTCTTCCACTCCTAAAGTAG+AGG - chr2.1:69964361-69964380 None:intergenic 40.0%
TTGGTCCAGAGATCAATGTA+AGG - chr2.1:69964919-69964938 None:intergenic 40.0%
TTTGGTCGCGTATATATTGC+AGG + chr2.1:69963769-69963788 MS.gene002547:intron 40.0%
! AATGCCTTTAAGGGGTCATT+AGG - chr2.1:69965365-69965384 None:intergenic 40.0%
! ATGCCTTTAAGGGGTCATTA+GGG - chr2.1:69965364-69965383 None:intergenic 40.0%
! CTACTTTAGGAGTGGAAGAA+TGG + chr2.1:69964361-69964380 MS.gene002547:intron 40.0%
! TAATGGGTATGCACACAATG+AGG + chr2.1:69963610-69963629 MS.gene002547:intron 40.0%
! TGAAAAGCAGAGCATCTACT+GGG - chr2.1:69963492-69963511 None:intergenic 40.0%
! TTGAAAAGCAGAGCATCTAC+TGG - chr2.1:69963493-69963512 None:intergenic 40.0%
!! CCATCGCTTCTGAAATTCAA+AGG - chr2.1:69964604-69964623 None:intergenic 40.0%
!! TTTTGGTGACTCAATCACTG+AGG + chr2.1:69962758-69962777 MS.gene002547:CDS 40.0%
AAATGCAACAGTTCCCTGAC+TGG + chr2.1:69964938-69964957 MS.gene002547:CDS 45.0%
AATACCTGAATGCGAAGAGC+CGG + chr2.1:69963169-69963188 MS.gene002547:intron 45.0%
ACGGCTATAGTGTAGGACTA+GGG + chr2.1:69963968-69963987 MS.gene002547:intron 45.0%
AGAAGGAGACAATGGAGCAA+AGG - chr2.1:69963545-69963564 None:intergenic 45.0%
AGGCATGCATGTTAGCAATG+GGG + chr2.1:69964326-69964345 MS.gene002547:intron 45.0%
CAAAGCAATCGGAGCAGTTT+CGG - chr2.1:69963436-69963455 None:intergenic 45.0%
CCAAATTCCTGAAATCCCAC+AGG - chr2.1:69964009-69964028 None:intergenic 45.0%
CCTGTGGGATTTCAGGAATT+TGG + chr2.1:69964006-69964025 MS.gene002547:intron 45.0%
CTCCATTGTCTCCTTCTTCA+AGG + chr2.1:69963548-69963567 MS.gene002547:CDS 45.0%
GAAAGGACTAATGAAGCTGC+TGG + chr2.1:69964847-69964866 MS.gene002547:CDS 45.0%
GAGGAATCCTTTGATGTTGG+AGG + chr2.1:69962777-69962796 MS.gene002547:CDS 45.0%
GAGTCGTGCAACTTCATCAA+TGG - chr2.1:69964661-69964680 None:intergenic 45.0%
GCAGCTTCATTAGTCCTTTC+AGG - chr2.1:69964847-69964866 None:intergenic 45.0%
GCGTGATTCCAATGAATGCA+TGG - chr2.1:69963061-69963080 None:intergenic 45.0%
GGTTTGCATCTAACTAACGG+AGG + chr2.1:69965239-69965258 MS.gene002547:CDS 45.0%
GTATGCACACAATGAGGGAT+TGG + chr2.1:69963616-69963635 MS.gene002547:intron 45.0%
GTGGGATTTCAGGAATTTGG+AGG + chr2.1:69964009-69964028 MS.gene002547:intron 45.0%
TACCGTGCGTGAGAAATAGT+TGG - chr2.1:69962820-69962839 None:intergenic 45.0%
TCCACTCCTAAAGTAGAGGT+TGG - chr2.1:69964357-69964376 None:intergenic 45.0%
TCCATTCCCACAGAAAAGCA+TGG - chr2.1:69964121-69964140 None:intergenic 45.0%
TCCTTTGATGTTGGAGGATG+GGG + chr2.1:69962783-69962802 MS.gene002547:CDS 45.0%
TGACCCTAATGACCCCTTAA+AGG + chr2.1:69965358-69965377 MS.gene002547:CDS 45.0%
TGCAAACCGTCACTGCATTT+CGG - chr2.1:69965227-69965246 None:intergenic 45.0%
TTGATGAAGTTGCACGACTC+AGG + chr2.1:69964661-69964680 MS.gene002547:CDS 45.0%
TTGTCGACCACTTATGGATC+CGG - chr2.1:69963191-69963210 None:intergenic 45.0%
TTGTTCTTTAGTGGCACAGC+AGG + chr2.1:69963689-69963708 MS.gene002547:intron 45.0%
! ACCAACCTCTACTTTAGGAG+TGG + chr2.1:69964353-69964372 MS.gene002547:intron 45.0%
! AGAGTTTTCCCTGTGTCACA+GGG + chr2.1:69963396-69963415 MS.gene002547:CDS 45.0%
! AGGGATTGGCACAGATTATC+AGG + chr2.1:69963630-69963649 MS.gene002547:intron 45.0%
! CTTTTCTGTGGGAATGGAGT+TGG + chr2.1:69964123-69964142 MS.gene002547:intron 45.0%
! GGTATGGGTTACCTTGAAGA+AGG - chr2.1:69963562-69963581 None:intergenic 45.0%
! GTCAGGGAACTGTTGCATTT+TGG - chr2.1:69964938-69964957 None:intergenic 45.0%
! TCCATGCTTTTCTGTGGGAA+TGG + chr2.1:69964117-69964136 MS.gene002547:intron 45.0%
! TGCCAACTATTTCTCACGCA+CGG + chr2.1:69962815-69962834 MS.gene002547:CDS 45.0%
! TGGTGCTAAGAGGGTATAGT+GGG + chr2.1:69963340-69963359 MS.gene002547:CDS 45.0%
!! TCTTCGCATTCAGGTATTGG+TGG - chr2.1:69963167-69963186 None:intergenic 45.0%
!! ATAAAAAAAATAAAAAAAAG+TGG - chr2.1:69964172-69964191 None:intergenic 5.0%
!!! AATAATAATTATTTTTCATT+TGG + chr2.1:69963799-69963818 MS.gene002547:intron 5.0%
ACAGTGCACGGCTATAGTGT+AGG + chr2.1:69963961-69963980 MS.gene002547:intron 50.0%
ACCCCATCCTCCAACATCAA+AGG - chr2.1:69962787-69962806 None:intergenic 50.0%
ATCCAGAGGGTCTTCCTGAA+AGG + chr2.1:69964830-69964849 MS.gene002547:CDS 50.0%
CAATGGGAGGAGGAGTTATG+AGG - chr2.1:69964644-69964663 None:intergenic 50.0%
CACGGCTATAGTGTAGGACT+AGG + chr2.1:69963967-69963986 MS.gene002547:intron 50.0%
CGTGCAACTTCATCAATGGG+AGG - chr2.1:69964657-69964676 None:intergenic 50.0%
GATACAAGGGGGAGATCAAC+TGG - chr2.1:69965332-69965351 None:intergenic 50.0%
GCAACTTCATCAATGGGAGG+AGG - chr2.1:69964654-69964673 None:intergenic 50.0%
GGCATGCATGTTAGCAATGG+GGG + chr2.1:69964327-69964346 MS.gene002547:intron 50.0%
GGCTCTTCGCATTCAGGTAT+TGG - chr2.1:69963170-69963189 None:intergenic 50.0%
TAAAGCTGTGGCACAGTGCA+CGG + chr2.1:69963949-69963968 MS.gene002547:intron 50.0%
TGCTAGAGCATGCATTGCTG+TGG + chr2.1:69964876-69964895 MS.gene002547:CDS 50.0%
TTCTTTAGTGGCACAGCAGG+AGG + chr2.1:69963692-69963711 MS.gene002547:intron 50.0%
TTTACACTTGCGTGGCCCAT+AGG + chr2.1:69964441-69964460 MS.gene002547:intron 50.0%
! AGGCAGATGTGGTGCTAAGA+GGG + chr2.1:69963331-69963350 MS.gene002547:intron 50.0%
! CAGAGTTTTCCCTGTGTCAC+AGG + chr2.1:69963395-69963414 MS.gene002547:CDS 50.0%
! GTGGTGCTAAGAGGGTATAG+TGG + chr2.1:69963339-69963358 MS.gene002547:CDS 50.0%
! TAGTGGGTACAACACGAGGT+GGG + chr2.1:69963356-69963375 MS.gene002547:CDS 50.0%
!! ATAGTGGGTACAACACGAGG+TGG + chr2.1:69963355-69963374 MS.gene002547:CDS 50.0%
!! GGTATAGTGGGTACAACACG+AGG + chr2.1:69963352-69963371 MS.gene002547:CDS 50.0%
ACATGGCCCTGTGGGATTTC+AGG + chr2.1:69963999-69964018 MS.gene002547:intron 55.0%
CGAAGAGCCGGATCCATAAG+TGG + chr2.1:69963181-69963200 MS.gene002547:intron 55.0%
GTCCTTTCAGGAAGACCCTC+TGG - chr2.1:69964835-69964854 None:intergenic 55.0%
! CAGGCAGATGTGGTGCTAAG+AGG + chr2.1:69963330-69963349 MS.gene002547:intron 55.0%
! GTTTTCCCTGTGTCACAGGG+CGG + chr2.1:69963399-69963418 MS.gene002547:CDS 55.0%
ATGCACGCACATGGCCCTGT+GGG + chr2.1:69963991-69964010 MS.gene002547:intron 60.0%
GGACTAGGGATGCACGCACA+TGG + chr2.1:69963982-69964001 MS.gene002547:intron 60.0%
GGATCCGGCTCTTCGCATTC+AGG - chr2.1:69963176-69963195 None:intergenic 60.0%
TGTCACCGCCCTGTGACACA+GGG - chr2.1:69963407-69963426 None:intergenic 60.0%
!! CAACACGAGGTGGGCACTGA+AGG + chr2.1:69963365-69963384 MS.gene002547:CDS 60.0%
!! GAGGTGGGCACTGAAGGTGT+TGG + chr2.1:69963371-69963390 MS.gene002547:CDS 60.0%
CTGTCACCGCCCTGTGACAC+AGG - chr2.1:69963408-69963427 None:intergenic 65.0%
GATGCACGCACATGGCCCTG+TGG + chr2.1:69963990-69964009 MS.gene002547:intron 65.0%
GTGTCACAGGGCGGTGACAG+TGG + chr2.1:69963408-69963427 MS.gene002547:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 69962732 69965391 69962732 ID=MS.gene002547
chr2.1 mRNA 69962732 69965391 69962732 ID=MS.gene002547.t1;Parent=MS.gene002547
chr2.1 exon 69962732 69962836 69962732 ID=MS.gene002547.t1.exon1;Parent=MS.gene002547.t1
chr2.1 CDS 69962732 69962836 69962732 ID=cds.MS.gene002547.t1;Parent=MS.gene002547.t1
chr2.1 exon 69963333 69963569 69963333 ID=MS.gene002547.t1.exon2;Parent=MS.gene002547.t1
chr2.1 CDS 69963333 69963569 69963333 ID=cds.MS.gene002547.t1;Parent=MS.gene002547.t1
chr2.1 exon 69964615 69964682 69964615 ID=MS.gene002547.t1.exon3;Parent=MS.gene002547.t1
chr2.1 CDS 69964615 69964682 69964615 ID=cds.MS.gene002547.t1;Parent=MS.gene002547.t1
chr2.1 exon 69964813 69964977 69964813 ID=MS.gene002547.t1.exon4;Parent=MS.gene002547.t1
chr2.1 CDS 69964813 69964977 69964813 ID=cds.MS.gene002547.t1;Parent=MS.gene002547.t1
chr2.1 exon 69965235 69965391 69965235 ID=MS.gene002547.t1.exon5;Parent=MS.gene002547.t1
chr2.1 CDS 69965235 69965391 69965235 ID=cds.MS.gene002547.t1;Parent=MS.gene002547.t1
Gene Sequence

>MS.gene002547

ATGACTAAGAGGCCACAAATATATCTTTTTGGTGACTCAATCACTGAGGAATCCTTTGATGTTGGAGGATGGGGTGCTTCTCTTGCCAACTATTTCTCACGCACGGTAACATCCATTCTTGCTTTGTTTTGCTTTAACAACTCATATTTTCATATCTGATTCATGTTCTTGTTAACATTCCACATTATATGTTTTGTTTATAAATGATTTATTTATTAGTCTCATCGTGTTAGGTGCAACCCAAATTGTAATATGATTTATTTATTAGTCTCGTCGTGTTGAGAATCTCACGTTGACATTGAGTTTATAAGTGGTGAAACTGGATTCCATGCATTCATTGGAATCACGCATTCGGGACATTGTTGATCGTTCTAAATTTTTTATTTCAAAATATAGAAATTGAATCTAAAGTGTCTGATCTTGATCAAACGGCCACCAATACCTGAATGCGAAGAGCCGGATCCATAAGTGGTCGACAATTTGAGTTAATTGTATCCCACATTCTGTTTTTAGATTTTAATGTAAAGTTTGAATCTTTTTGTAATGGGGTTTGTGTTTCTTTTGAAAAGGATAAATGAGGTTTGTTTGTAACATGTAACAGGCAGATGTGGTGCTAAGAGGGTATAGTGGGTACAACACGAGGTGGGCACTGAAGGTGTTGGACAGAGTTTTCCCTGTGTCACAGGGCGGTGACAGTGGAACCGAAACTGCTCCGATTGCTTTGACTGTTTTCTTTGGGGCTAATGACGCTTGTCTTCCCAGTAGATGCTCTGCTTTTCAACATGTCCCTCTACATGAATACAAGGAGAACCTTTGCTCCATTGTCTCCTTCTTCAAGGTAACCCATACCCGTACAGAGTTTGAATAAAATTAGAGTTTAATGGGTATGCACACAATGAGGGATTGGCACAGATTATCAGGTAAAAGACTACTGTGTTGAAACCCAATAAAGGATCATTGTTCTTTAGTGGCACAGCAGGAGGCTTTTTTCTTGAAAAAAAAATAGTTTTGATCTCTTGTGGATTTGATAAGTGTGCTTTGGTCGCGTATATATTGCAGGTTACAGAAATAATAATTATTTTTCATTTGGAAGTTTGTCGCTGTTATGATTATTTAAGTATAGTCTTGCACATTCTAATAATGTTGCATGGCGCATTAGCTATTGCAACTGTTAGATCTAGAGAACGAAAAGTTTCTCTCTGGATTTATAATGTTTGTAAAGCTGTGGCACAGTGCACGGCTATAGTGTAGGACTAGGGATGCACGCACATGGCCCTGTGGGATTTCAGGAATTTGGAGGTTAATACAATAGGTGATGTTAAATGTGGACTCTGGCTTTTTGCCACTACTGTATGATCAATAATACACACTCCAAAGAGTTTGATTCCATGCTTTTCTGTGGGAATGGAGTTGGTACGAGATGCTTGTGTAAAAGGTCCACTTTTTTTTATTTTTTTTATTGAATTGAGTCTAGCATTGTTGTTAGCGTTGTTTTGACAAACCTAAACATCATGCCTTCTTTCTTTGTGCCATTACTTGGTTCCTGTGCAATTATGTTATCAGTTGGTTTGGTCTCATGTGAGCTGTTAAGTATAGGCATGCATGTTAGCAATGGGGGAAAACCAACCTCTACTTTAGGAGTGGAAGAATGGTCCCTTTCTTTAAGGATCAAAGATATCTGCTTATAACATTCTTAAAGGAAAGTTTTTTTTACACTTGCGTGGCCCATAGGTTGATCAATGTTCATGCTTATATTAAGAAAGTTGTTATCCTTAAATGTATATGTAGGTATATAAGTTGACGCTTGAATATTTTTAATTTCAATTCTAGGCCTCTTGTATAAATGGTATAATTAGACACTGCAAATTTCCTTTGAATTTCAGAAGCGATGGCCGACAAGTAAAGTCATCCTCATAACTCCTCCTCCCATTGATGAAGTTGCACGACTCAGGTATTGTTTTATTGGCTTTTTATCTTCATTTTGTCACTGATTTTATTATGTTTTCTTTGTTTGTGACATTTAAACATATAATTCTATAGAGGTTAATCACACTTGAAGAATTTCTAAAAATCTATGACAGATATCCATTTGAGAATAATCCAGAGGGTCTTCCTGAAAGGACTAATGAAGCTGCTGGTGAATATGCTAGAGCATGCATTGCTGTGGCCACTGAATGTCATATTCCTTACATTGATCTCTGGACCAAAATGCAACAGTTCCCTGACTGGAAAAAAGTTTATTTAAGGTTTATAATTTATTTTACCTTCTTTGTTTATCTTGGCTTACAACATTTTGCATTTTTGCATCATACATATAAAAGCTTACGAAGTTTTCATTGCTGACTTGATTGATTTTTCAAAATGATCAATTCTGTAGCCATATATGTGACTTGAGTTATGCGAAAATGACTAATTCTGTATGAATTTGCAAAGAATAATATCATTATTTAATGCATATGGTATGATTTGATATGAATATACGGTTTTGTTTACCGAAATGCAGTGACGGTTTGCATCTAACTAACGGAGGGAATCAACTTGTATTTGAAGAAGTAATAAAAAAGCTGAGAGATGAAGGTTTGAGTCTAGAATCTATTCCAGTTGATCTCCCCCTTGTATCTGATATTGACCCTAATGACCCCTTAAAGGCATTTCTGTAG
Protein sequence

>MS.gene002547.t1

MTKRPQIYLFGDSITEESFDVGGWGASLANYFSRTADVVLRGYSGYNTRWALKVLDRVFPVSQGGDSGTETAPIALTVFFGANDACLPSRCSAFQHVPLHEYKENLCSIVSFFKKRWPTSKVILITPPPIDEVARLRYPFENNPEGLPERTNEAAGEYARACIAVATECHIPYIDLWTKMQQFPDWKKVYLSDGLHLTNGGNQLVFEEVIKKLRDEGLSLESIPVDLPLVSDIDPNDPLKAFL