Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56873.t1 | KEH31840.1 | 92.3 | 274 | 21 | 0 | 1 | 274 | 1 | 274 | 6.40E-147 | 530 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56873.t1 | Q9FM04 | 67.6 | 207 | 67 | 0 | 61 | 267 | 33 | 239 | 1.9e-83 | 310.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56873.t1 | A0A072V154 | 92.3 | 274 | 21 | 0 | 1 | 274 | 1 | 274 | 4.6e-147 | 530.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071405 | MS.gene56873 | PPI |
| MS.gene031984 | MS.gene56873 | PPI |
| MS.gene01667 | MS.gene56873 | PPI |
| MS.gene002546 | MS.gene56873 | PPI |
| MS.gene002548 | MS.gene56873 | PPI |
| MS.gene56873 | MS.gene057336 | PPI |
| MS.gene01669 | MS.gene56873 | PPI |
| MS.gene56873 | MS.gene071406 | PPI |
| MS.gene01526 | MS.gene56873 | PPI |
| MS.gene56873 | MS.gene69231 | PPI |
| MS.gene56873 | MS.gene002547 | PPI |
| MS.gene071404 | MS.gene56873 | PPI |
| MS.gene56873 | MS.gene004219 | PPI |
| MS.gene01523 | MS.gene56873 | PPI |
| MS.gene008064 | MS.gene56873 | PPI |
| MS.gene004220 | MS.gene56873 | PPI |
| MS.gene004221 | MS.gene56873 | PPI |
| MS.gene01668 | MS.gene56873 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56873.t1 | MTR_4g105680 | 92.336 | 274 | 21 | 0 | 1 | 274 | 1 | 274 | 0.0 | 508 |
| MS.gene56873.t1 | MTR_2g015500 | 46.047 | 215 | 106 | 3 | 58 | 265 | 31 | 242 | 3.70e-62 | 196 |
| MS.gene56873.t1 | MTR_2g015510 | 46.635 | 208 | 104 | 2 | 62 | 265 | 37 | 241 | 2.34e-61 | 194 |
| MS.gene56873.t1 | MTR_7g068530 | 36.098 | 205 | 120 | 2 | 61 | 261 | 37 | 234 | 3.35e-42 | 145 |
| MS.gene56873.t1 | MTR_3g070460 | 35.484 | 217 | 126 | 4 | 47 | 257 | 24 | 232 | 2.76e-41 | 143 |
| MS.gene56873.t1 | MTR_4g016510 | 34.826 | 201 | 122 | 2 | 61 | 257 | 37 | 232 | 1.38e-38 | 136 |
| MS.gene56873.t1 | MTR_7g068550 | 35.450 | 189 | 115 | 1 | 51 | 239 | 27 | 208 | 9.09e-37 | 131 |
| MS.gene56873.t1 | MTR_7g068460 | 32.338 | 201 | 126 | 3 | 61 | 257 | 63 | 257 | 1.21e-34 | 126 |
| MS.gene56873.t1 | MTR_7g068500 | 33.333 | 201 | 124 | 3 | 61 | 257 | 62 | 256 | 3.70e-34 | 125 |
| MS.gene56873.t1 | MTR_2g015480 | 39.604 | 202 | 98 | 5 | 62 | 257 | 89 | 272 | 1.35e-33 | 124 |
| MS.gene56873.t1 | MTR_7g068470 | 33.333 | 201 | 124 | 3 | 61 | 257 | 32 | 226 | 6.07e-32 | 118 |
| MS.gene56873.t1 | MTR_7g068450 | 31.731 | 208 | 129 | 4 | 61 | 261 | 33 | 234 | 2.79e-30 | 114 |
| MS.gene56873.t1 | MTR_7g068470 | 32.338 | 201 | 122 | 4 | 61 | 257 | 32 | 222 | 2.74e-29 | 111 |
| MS.gene56873.t1 | MTR_4g016500 | 32.051 | 156 | 71 | 2 | 62 | 217 | 280 | 400 | 5.98e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56873.t1 | AT5G62930 | 67.633 | 207 | 67 | 0 | 61 | 267 | 33 | 239 | 3.10e-106 | 308 |
| MS.gene56873.t1 | AT5G62930 | 67.633 | 207 | 67 | 0 | 61 | 267 | 59 | 265 | 1.22e-105 | 308 |
| MS.gene56873.t1 | AT5G62930 | 65.363 | 179 | 62 | 0 | 89 | 267 | 3 | 181 | 7.04e-86 | 254 |
| MS.gene56873.t1 | AT5G45920 | 45.909 | 220 | 113 | 2 | 51 | 267 | 24 | 240 | 7.28e-64 | 200 |
| MS.gene56873.t1 | AT5G45920 | 45.909 | 220 | 113 | 2 | 51 | 267 | 24 | 240 | 7.28e-64 | 200 |
| MS.gene56873.t1 | AT5G45920 | 47.826 | 161 | 78 | 2 | 58 | 215 | 31 | 188 | 3.05e-46 | 154 |
| MS.gene56873.t1 | AT5G45920 | 47.826 | 161 | 78 | 2 | 58 | 215 | 31 | 188 | 3.05e-46 | 154 |
| MS.gene56873.t1 | AT3G11210 | 32.864 | 213 | 130 | 3 | 51 | 257 | 27 | 232 | 4.61e-36 | 129 |
| MS.gene56873.t1 | AT2G38180 | 31.658 | 199 | 124 | 4 | 58 | 251 | 33 | 224 | 1.30e-31 | 119 |
Find 56 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCACTATTATTGAGAAAA+AGG | 0.232037 | 8.1:-17614786 | MS.gene56873:CDS |
| GCCTTCTGTTTCTTGCATCT+TGG | 0.256222 | 8.1:+17612868 | None:intergenic |
| TCTAGCATTATTACCATATA+AGG | 0.293325 | 8.1:+17612988 | None:intergenic |
| CGCTCTCGCTCTCGCTCGTT+GGG | 0.307281 | 8.1:+17614734 | None:intergenic |
| GTATCTTGCAGATCCTTATA+TGG | 0.309244 | 8.1:-17613001 | MS.gene56873:intron |
| GAGCAATCATTCCGAGTAAA+TGG | 0.337477 | 8.1:-17614669 | MS.gene56873:CDS |
| GAAAGAACAAATGAAGTTAC+TGG | 0.362730 | 8.1:-17612956 | MS.gene56873:CDS |
| TTGTCTTTCACTAGTTCTTC+CGG | 0.370765 | 8.1:+17614345 | None:intergenic |
| CGACGTCCTTCTTCACAAAC+TGG | 0.377567 | 8.1:+17613579 | None:intergenic |
| TTGTGTCTGTATTCTTGAAT+AGG | 0.381278 | 8.1:+17614316 | None:intergenic |
| TCGCTCTCGCTCTCGCTCGT+TGG | 0.395686 | 8.1:+17614733 | None:intergenic |
| ATTCTAGAGGGAAGAGATGA+TGG | 0.398655 | 8.1:+17614425 | None:intergenic |
| CTGCATTTCCATCTGGTGTC+AGG | 0.428518 | 8.1:+17612151 | None:intergenic |
| ATCATTCCGAGTAAATGGTT+GGG | 0.434075 | 8.1:-17614664 | MS.gene56873:CDS |
| AGAGGAGCGCATCCCTCGTT+GGG | 0.442649 | 8.1:+17614763 | None:intergenic |
| GAGTGGTGAGGGAAATCATA+TGG | 0.447386 | 8.1:+17612069 | None:intergenic |
| GAAGCATAACTTGCGAGAAT+AGG | 0.455416 | 8.1:+17614623 | None:intergenic |
| AAGACTACTGCATTTCCATC+TGG | 0.464870 | 8.1:+17612144 | None:intergenic |
| GATATACTTGTTCGTGGCTA+TGG | 0.466209 | 8.1:-17614481 | MS.gene56873:CDS |
| GCTAACGATGCTGCTTTGTC+CGG | 0.479496 | 8.1:-17614364 | MS.gene56873:CDS |
| GTGGTTTAGTTGATTCTAGA+GGG | 0.484588 | 8.1:+17614413 | None:intergenic |
| ATCAAGGTGTTCAACGAGGC+AGG | 0.488783 | 8.1:-17612111 | MS.gene56873:CDS |
| TGTTGAGATAGCTAAGGAAA+TGG | 0.489215 | 8.1:-17612915 | MS.gene56873:CDS |
| CAGGCTGATATACTTGTTCG+TGG | 0.490934 | 8.1:-17614487 | MS.gene56873:CDS |
| AGGCATCACAAACATTCTGC+TGG | 0.500656 | 8.1:+17612013 | None:intergenic |
| GTTGCTTGGAGATTCATTAA+CGG | 0.503160 | 8.1:-17614691 | MS.gene56873:CDS |
| AGAGAAAACATAGTGTTGCT+TGG | 0.507271 | 8.1:-17614705 | MS.gene56873:CDS |
| CCACCTCCAGTTTGTGAAGA+AGG | 0.511510 | 8.1:-17613585 | MS.gene56873:CDS |
| TAAAGAATAGAACCTTTAAG+TGG | 0.523281 | 8.1:+17614275 | None:intergenic |
| CAGAGGAGCGCATCCCTCGT+TGG | 0.524318 | 8.1:+17614762 | None:intergenic |
| GGTGGTTTAGTTGATTCTAG+AGG | 0.532653 | 8.1:+17614412 | None:intergenic |
| CCTTCTTCACAAACTGGAGG+TGG | 0.540116 | 8.1:+17613585 | None:intergenic |
| GTTGAGATAGCTAAGGAAAT+GGG | 0.555304 | 8.1:-17612914 | MS.gene56873:CDS |
| ATAAGCACAATAAGCATGGT+TGG | 0.556801 | 8.1:+17613612 | None:intergenic |
| AATCATTCCGAGTAAATGGT+TGG | 0.559432 | 8.1:-17614665 | MS.gene56873:CDS |
| TTCTGCTGGAAAGAGCTCCC+AGG | 0.559689 | 8.1:+17612027 | None:intergenic |
| AGTCTTTCAAGAAGTGATCA+AGG | 0.560324 | 8.1:-17612127 | MS.gene56873:CDS |
| AAGAAAATTGCTGTAGCAAG+AGG | 0.561552 | 8.1:+17614391 | None:intergenic |
| TCATTCCGAGTAAATGGTTG+GGG | 0.564943 | 8.1:-17614663 | MS.gene56873:CDS |
| TCGCTCGTTGGGCAGATCAG+AGG | 0.567852 | 8.1:+17614745 | None:intergenic |
| GGGTTGCACCTGACACCAGA+TGG | 0.569557 | 8.1:-17612159 | MS.gene56873:CDS |
| AGATGCAAGAAACAGAAGGC+TGG | 0.577094 | 8.1:-17612865 | MS.gene56873:CDS |
| AGTAATAAGCACAATAAGCA+TGG | 0.588262 | 8.1:+17613608 | None:intergenic |
| AAAATTGCTGTAGCAAGAGG+TGG | 0.588674 | 8.1:+17614394 | None:intergenic |
| ACCAGAACCCTACTATAATG+AGG | 0.589599 | 8.1:+17611993 | None:intergenic |
| GATAGCTAAGGAAATGGGTG+TGG | 0.608314 | 8.1:-17612909 | MS.gene56873:CDS |
| TAACTTGCGAGAATAGGCAT+TGG | 0.612661 | 8.1:+17614629 | None:intergenic |
| TGGTGGATACAACACTCGAT+GGG | 0.613654 | 8.1:-17614461 | MS.gene56873:CDS |
| ATGGTGGATACAACACTCGA+TGG | 0.617751 | 8.1:-17614462 | MS.gene56873:CDS |
| AAGCACCCCAACCATTTACT+CGG | 0.624321 | 8.1:+17614658 | None:intergenic |
| ATACTTGTTCGTGGCTATGG+TGG | 0.639114 | 8.1:-17614478 | MS.gene56873:CDS |
| TCCAAGATGCAAGAAACAGA+AGG | 0.645640 | 8.1:-17612869 | MS.gene56873:CDS |
| CGCATGTGTTGAGATAGCTA+AGG | 0.654605 | 8.1:-17612921 | MS.gene56873:CDS |
| GTGTGGCTTATATCAATCTG+TGG | 0.661903 | 8.1:-17612892 | MS.gene56873:CDS |
| CGTCCTTCTTCACAAACTGG+AGG | 0.663317 | 8.1:+17613582 | None:intergenic |
| AGTGATCAAGGTGTTCAACG+AGG | 0.734747 | 8.1:-17612115 | MS.gene56873:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTTTTTTTTGTTTT+TGG | - | chr8.1:17612834-17612853 | MS.gene56873:intron | 10.0% |
| !! | AAATATTTGTGATTATGAAT+TGG | - | chr8.1:17614298-17614317 | MS.gene56873:CDS | 15.0% |
| !! | AACATGAAACTAATATAAAA+TGG | + | chr8.1:17613762-17613781 | None:intergenic | 15.0% |
| !! | TAGAATTATCTAATATTAGT+TGG | - | chr8.1:17612931-17612950 | MS.gene56873:CDS | 15.0% |
| !! | TGATACTATTATATATAGTA+TGG | - | chr8.1:17614337-17614356 | MS.gene56873:CDS | 15.0% |
| !! | TTTATCACTACAATAAATAA+TGG | - | chr8.1:17612572-17612591 | MS.gene56873:intron | 15.0% |
| !!! | TATTTTGTGATATGTTAATT+AGG | - | chr8.1:17614207-17614226 | MS.gene56873:intron | 15.0% |
| !! | AAAGTATAAATGCAAAACAT+AGG | + | chr8.1:17612555-17612574 | None:intergenic | 20.0% |
| !! | AACTAATATTCTCTATTTCA+TGG | + | chr8.1:17613727-17613746 | None:intergenic | 20.0% |
| !! | AATTGGCATATAAAGTATAA+AGG | + | chr8.1:17613116-17613135 | None:intergenic | 20.0% |
| !! | ACGAAAATAAATGAATGAAA+TGG | + | chr8.1:17612247-17612266 | None:intergenic | 20.0% |
| !! | ACTACAATAAATAATGGTTT+GGG | - | chr8.1:17612578-17612597 | MS.gene56873:intron | 20.0% |
| !! | TCAATAAGTGATAACATAAT+TGG | + | chr8.1:17613133-17613152 | None:intergenic | 20.0% |
| !! | TTCTAGTAAAAAAAAAAGTG+TGG | - | chr8.1:17613594-17613613 | MS.gene56873:CDS | 20.0% |
| !! | TTGTAAATAATTTACTTTCC+TGG | - | chr8.1:17614243-17614262 | MS.gene56873:intron | 20.0% |
| !! | TTTCACTATTATTGAGAAAA+AGG | - | chr8.1:17612012-17612031 | MS.gene56873:CDS | 20.0% |
| !!! | AATGCAATTGATTCAATTAT+AGG | + | chr8.1:17612288-17612307 | None:intergenic | 20.0% |
| !!! | ATATTTTAGATGTATGTGAA+CGG | + | chr8.1:17613509-17613528 | None:intergenic | 20.0% |
| !!! | ATTTTCTAGAATATTTCACT+CGG | - | chr8.1:17612870-17612889 | MS.gene56873:CDS | 20.0% |
| !!! | GTAATTGATATTGAATTTTG+AGG | + | chr8.1:17612206-17612225 | None:intergenic | 20.0% |
| ! | ATATAAGGATTCAAGATATC+AGG | - | chr8.1:17612783-17612802 | MS.gene56873:intron | 25.0% |
| ! | ATGATCCAAAATATCATCAT+TGG | + | chr8.1:17612754-17612773 | None:intergenic | 25.0% |
| ! | CACTACAATAAATAATGGTT+TGG | - | chr8.1:17612577-17612596 | MS.gene56873:intron | 25.0% |
| ! | TAAAGAATAGAACCTTTAAG+TGG | + | chr8.1:17612526-17612545 | None:intergenic | 25.0% |
| ! | TCTAGCATTATTACCATATA+AGG | + | chr8.1:17613813-17613832 | None:intergenic | 25.0% |
| !! | AAAATTGATGACAAAAATCC+TGG | - | chr8.1:17614753-17614772 | MS.gene56873:CDS | 25.0% |
| !! | AAATTGATGACAAAAATCCT+GGG | - | chr8.1:17614754-17614773 | MS.gene56873:CDS | 25.0% |
| !! | ACTGTCTTTAAATTTTGCAT+TGG | - | chr8.1:17614515-17614534 | MS.gene56873:intron | 25.0% |
| !! | CTTATCCAATGATGATATTT+TGG | - | chr8.1:17612746-17612765 | MS.gene56873:intron | 25.0% |
| !! | TACATCTAAAATATCTGACA+TGG | - | chr8.1:17613515-17613534 | MS.gene56873:intron | 25.0% |
| !! | TCTTGAATCCTTATATTTTC+AGG | + | chr8.1:17612779-17612798 | None:intergenic | 25.0% |
| !! | TTGAATCAATTGCATTTTTC+AGG | - | chr8.1:17612292-17612311 | MS.gene56873:intron | 25.0% |
| !!! | AATGATGATATTTTGGATCA+TGG | - | chr8.1:17612753-17612772 | MS.gene56873:intron | 25.0% |
| !!! | ATTGATATTGAATTTTGAGG+AGG | + | chr8.1:17612203-17612222 | None:intergenic | 25.0% |
| !!! | ATTGTTGTTTTGCATTTACA+GGG | - | chr8.1:17614614-17614633 | MS.gene56873:intron | 25.0% |
| !!! | TATTGTTGTTTTGCATTTAC+AGG | - | chr8.1:17614613-17614632 | MS.gene56873:intron | 25.0% |
| !!! | TTTTGTCATCAATTTTTGAG+TGG | + | chr8.1:17614749-17614768 | None:intergenic | 25.0% |
| AAATGGATCTGATCTAATCA+TGG | + | chr8.1:17612230-17612249 | None:intergenic | 30.0% | |
| AAATGGTGGTTCAGAAAATA+TGG | + | chr8.1:17613473-17613492 | None:intergenic | 30.0% | |
| AACATGACACAGTTTAAAGA+AGG | + | chr8.1:17613644-17613663 | None:intergenic | 30.0% | |
| ACGGAAGATAAATAGTCAAA+TGG | + | chr8.1:17613490-17613509 | None:intergenic | 30.0% | |
| AGAAAATATGGATGCAATAG+TGG | + | chr8.1:17613461-17613480 | None:intergenic | 30.0% | |
| AGTAATAAGCACAATAAGCA+TGG | + | chr8.1:17613193-17613212 | None:intergenic | 30.0% | |
| ATAATTTACTTTCCTGGACT+AGG | - | chr8.1:17614249-17614268 | MS.gene56873:intron | 30.0% | |
| CTTTAATCAACAAGAAAAGG+TGG | + | chr8.1:17614022-17614041 | None:intergenic | 30.0% | |
| GAAAGAACAAATGAAGTTAC+TGG | - | chr8.1:17613842-17613861 | MS.gene56873:intron | 30.0% | |
| GAACATTTCCTTTACAAATG+TGG | - | chr8.1:17612697-17612716 | MS.gene56873:intron | 30.0% | |
| GAAGATAAATAGTCAAATGG+TGG | + | chr8.1:17613487-17613506 | None:intergenic | 30.0% | |
| GTAACAAGATAGAAACTCAT+CGG | + | chr8.1:17612969-17612988 | None:intergenic | 30.0% | |
| TTGACAAACATATGTGACAT+AGG | - | chr8.1:17613991-17614010 | MS.gene56873:intron | 30.0% | |
| TTGTGTCTGTATTCTTGAAT+AGG | + | chr8.1:17612485-17612504 | None:intergenic | 30.0% | |
| ! | CAATATTGATAACCCTTAAC+TGG | + | chr8.1:17614598-17614617 | None:intergenic | 30.0% |
| ! | GATTTAACTTTGACTACATC+TGG | - | chr8.1:17614057-17614076 | MS.gene56873:intron | 30.0% |
| ! | TCTTGTTGATTAAAGCCAAA+AGG | - | chr8.1:17614027-17614046 | MS.gene56873:intron | 30.0% |
| ! | TTATACCATGTCAGGAATTT+TGG | + | chr8.1:17614387-17614406 | None:intergenic | 30.0% |
| !! | TGGCTTTAATCAACAAGAAA+AGG | + | chr8.1:17614025-17614044 | None:intergenic | 30.0% |
| !! | TTTTGTGGTTAGTTATAACC+TGG | - | chr8.1:17613966-17613985 | MS.gene56873:intron | 30.0% |
| !!! | AAGGTAGTTTTAACCAAACT+AGG | + | chr8.1:17613625-17613644 | None:intergenic | 30.0% |
| !!! | ATTTTTTCCAAATCGTGTCA+TGG | + | chr8.1:17612629-17612648 | None:intergenic | 30.0% |
| !!! | GAATTTGCTGGTTGTTTTAT+GGG | - | chr8.1:17613685-17613704 | MS.gene56873:intron | 30.0% |
| !!! | TGAATTTGCTGGTTGTTTTA+TGG | - | chr8.1:17613684-17613703 | MS.gene56873:intron | 30.0% |
| AAAAATACAGCACACTGTGA+GGG | + | chr8.1:17613562-17613581 | None:intergenic | 35.0% | |
| AAAAATGGTGCTCCACTTAA+AGG | - | chr8.1:17612511-17612530 | MS.gene56873:intron | 35.0% | |
| AAGAAAATTGCTGTAGCAAG+AGG | + | chr8.1:17612410-17612429 | None:intergenic | 35.0% | |
| AATCATTCCGAGTAAATGGT+TGG | - | chr8.1:17612133-17612152 | MS.gene56873:CDS | 35.0% | |
| AGGATTCAAGATATCAGGAT+TGG | - | chr8.1:17612788-17612807 | MS.gene56873:intron | 35.0% | |
| AGTCTTTCAAGAAGTGATCA+AGG | - | chr8.1:17614671-17614690 | MS.gene56873:CDS | 35.0% | |
| ATAAGCACAATAAGCATGGT+TGG | + | chr8.1:17613189-17613208 | None:intergenic | 35.0% | |
| ATCATTCCGAGTAAATGGTT+GGG | - | chr8.1:17612134-17612153 | MS.gene56873:CDS | 35.0% | |
| ATGCTAGATTCTTCCAGTTA+AGG | - | chr8.1:17614582-17614601 | MS.gene56873:intron | 35.0% | |
| ATTGAAATTAGCGCTCGATT+TGG | - | chr8.1:17612668-17612687 | MS.gene56873:intron | 35.0% | |
| CTTGTTACTCATGCTTTCAA+AGG | - | chr8.1:17612981-17613000 | MS.gene56873:CDS | 35.0% | |
| GATAGCAAGAACAGTTTCAT+TGG | + | chr8.1:17613375-17613394 | None:intergenic | 35.0% | |
| GATCATGGCCTGAAAATATA+AGG | - | chr8.1:17612768-17612787 | MS.gene56873:intron | 35.0% | |
| GGCTATTTACGACATCTTAT+TGG | - | chr8.1:17613343-17613362 | MS.gene56873:intron | 35.0% | |
| GTATCTTGCAGATCCTTATA+TGG | - | chr8.1:17613797-17613816 | MS.gene56873:intron | 35.0% | |
| GTATGGAATGCAATAGAGAA+AGG | - | chr8.1:17614354-17614373 | MS.gene56873:CDS | 35.0% | |
| GTGATCCTGTTATTAGTCAA+GGG | - | chr8.1:17614087-17614106 | MS.gene56873:intron | 35.0% | |
| GTTGAGATAGCTAAGGAAAT+GGG | - | chr8.1:17613884-17613903 | MS.gene56873:intron | 35.0% | |
| GTTGCTTGGAGATTCATTAA+CGG | - | chr8.1:17612107-17612126 | MS.gene56873:CDS | 35.0% | |
| TACACTGCTTATGAATTTGC+TGG | - | chr8.1:17613673-17613692 | MS.gene56873:intron | 35.0% | |
| TAGCCAAGTAGATAATAGTG+CGG | + | chr8.1:17613328-17613347 | None:intergenic | 35.0% | |
| TAGTGTCACCACATTTGTAA+AGG | + | chr8.1:17612708-17612727 | None:intergenic | 35.0% | |
| TGCTAGATTCTTCCAGTTAA+GGG | - | chr8.1:17614583-17614602 | MS.gene56873:intron | 35.0% | |
| TGTGATCCTGTTATTAGTCA+AGG | - | chr8.1:17614086-17614105 | MS.gene56873:intron | 35.0% | |
| TGTTGAGATAGCTAAGGAAA+TGG | - | chr8.1:17613883-17613902 | MS.gene56873:intron | 35.0% | |
| TTATTTATCTCACCTAGTCC+AGG | + | chr8.1:17614264-17614283 | None:intergenic | 35.0% | |
| TTTCCGCACTATTATCTACT+TGG | - | chr8.1:17613322-17613341 | MS.gene56873:intron | 35.0% | |
| ! | AAGTGTGGTTTTTCCTAGTT+TGG | - | chr8.1:17613609-17613628 | MS.gene56873:CDS | 35.0% |
| ! | AGAGAAAACATAGTGTTGCT+TGG | - | chr8.1:17612093-17612112 | MS.gene56873:CDS | 35.0% |
| ! | AGTGGTTCTGCTAATAACAA+TGG | + | chr8.1:17613443-17613462 | None:intergenic | 35.0% |
| ! | CTTGCTACAGCAATTTTCTT+CGG | - | chr8.1:17612410-17612429 | MS.gene56873:intron | 35.0% |
| ! | GCTGGCAAAAGAAATTTTTG+TGG | - | chr8.1:17613951-17613970 | MS.gene56873:intron | 35.0% |
| ! | GTGGTTTAGTTGATTCTAGA+GGG | + | chr8.1:17612388-17612407 | None:intergenic | 35.0% |
| ! | GTTAAATCCATGATGCCTTT+TGG | + | chr8.1:17614045-17614064 | None:intergenic | 35.0% |
| ! | TGTTTTGCATTTACAGGGAT+GGG | - | chr8.1:17614619-17614638 | MS.gene56873:intron | 35.0% |
| ! | TTGTCTTTCACTAGTTCTTC+CGG | + | chr8.1:17612456-17612475 | None:intergenic | 35.0% |
| !! | ATTAAAGCCAAAAGGCATCA+TGG | - | chr8.1:17614035-17614054 | MS.gene56873:intron | 35.0% |
| !! | TTGTTTTGCATTTACAGGGA+TGG | - | chr8.1:17614618-17614637 | MS.gene56873:intron | 35.0% |
| !!! | CATCAATTTTTGAGTGGTGA+GGG | + | chr8.1:17614743-17614762 | None:intergenic | 35.0% |
| !!! | TCATCAATTTTTGAGTGGTG+AGG | + | chr8.1:17614744-17614763 | None:intergenic | 35.0% |
| !!! | TTAAGTGGAGCACCATTTTT+TGG | + | chr8.1:17612511-17612530 | None:intergenic | 35.0% |
| AAAATTGCTGTAGCAAGAGG+TGG | + | chr8.1:17612407-17612426 | None:intergenic | 40.0% | |
| AAGACTACTGCATTTCCATC+TGG | + | chr8.1:17614657-17614676 | None:intergenic | 40.0% | |
| CAAAAATACAGCACACTGTG+AGG | + | chr8.1:17613563-17613582 | None:intergenic | 40.0% | |
| CACATATGTTTGTCAAGTCC+AGG | + | chr8.1:17613987-17614006 | None:intergenic | 40.0% | |
| CAGACACAACCTCCAAAAAA+TGG | - | chr8.1:17612496-17612515 | MS.gene56873:intron | 40.0% | |
| CCTGCCTGTACTAACAAAAT+CGG | - | chr8.1:17613073-17613092 | MS.gene56873:intron | 40.0% | |
| CTGCCTGTACTAACAAAATC+GGG | - | chr8.1:17613074-17613093 | MS.gene56873:intron | 40.0% | |
| GAATGCCCTTGACTAATAAC+AGG | + | chr8.1:17614095-17614114 | None:intergenic | 40.0% | |
| GAGCAATCATTCCGAGTAAA+TGG | - | chr8.1:17612129-17612148 | MS.gene56873:CDS | 40.0% | |
| GATATACTTGTTCGTGGCTA+TGG | - | chr8.1:17612317-17612336 | MS.gene56873:intron | 40.0% | |
| GGCTCAAGGTATAACAAAAG+AGG | + | chr8.1:17613541-17613560 | None:intergenic | 40.0% | |
| GGTTCTGCTAATAACAATGG+TGG | + | chr8.1:17613440-17613459 | None:intergenic | 40.0% | |
| GTGTGGCTTATATCAATCTG+TGG | - | chr8.1:17613906-17613925 | MS.gene56873:intron | 40.0% | |
| TCAAGCCAAAATTCCTGACA+TGG | - | chr8.1:17614379-17614398 | MS.gene56873:CDS | 40.0% | |
| TCATTCCGAGTAAATGGTTG+GGG | - | chr8.1:17612135-17612154 | MS.gene56873:CDS | 40.0% | |
| TCCAAGATGCAAGAAACAGA+AGG | - | chr8.1:17613929-17613948 | MS.gene56873:intron | 40.0% | |
| TGTGGTGACACTAGTCATTA+TGG | - | chr8.1:17612715-17612734 | MS.gene56873:intron | 40.0% | |
| TGTTACTCCATGACACGATT+TGG | - | chr8.1:17612619-17612638 | MS.gene56873:intron | 40.0% | |
| TGTTGGAATTCAAGTGTGAG+TGG | - | chr8.1:17614478-17614497 | MS.gene56873:CDS | 40.0% | |
| TTTGCTTCTATGTTGAGTGC+TGG | - | chr8.1:17613029-17613048 | MS.gene56873:intron | 40.0% | |
| ! | AAGCCCGATTTTGTTAGTAC+AGG | + | chr8.1:17613080-17613099 | None:intergenic | 40.0% |
| ! | ATTCTAGAGGGAAGAGATGA+TGG | + | chr8.1:17612376-17612395 | None:intergenic | 40.0% |
| ! | GAAGCATAACTTGCGAGAAT+AGG | + | chr8.1:17612178-17612197 | None:intergenic | 40.0% |
| ! | GGTGGTTTAGTTGATTCTAG+AGG | + | chr8.1:17612389-17612408 | None:intergenic | 40.0% |
| ! | TAACTTGCGAGAATAGGCAT+TGG | + | chr8.1:17612172-17612191 | None:intergenic | 40.0% |
| !! | TTAGCGCTCGATTTGGAAAT+TGG | - | chr8.1:17612675-17612694 | MS.gene56873:intron | 40.0% |
| AAGCACCCCAACCATTTACT+CGG | + | chr8.1:17612143-17612162 | None:intergenic | 45.0% | |
| AGATGCAAGAAACAGAAGGC+TGG | - | chr8.1:17613933-17613952 | MS.gene56873:intron | 45.0% | |
| AGGCATCACAAACATTCTGC+TGG | + | chr8.1:17614788-17614807 | None:intergenic | 45.0% | |
| ATACTTGTTCGTGGCTATGG+TGG | - | chr8.1:17612320-17612339 | MS.gene56873:intron | 45.0% | |
| ATTGAGAAAAAGGCCCAACG+AGG | - | chr8.1:17612022-17612041 | MS.gene56873:CDS | 45.0% | |
| CAGGCTGATATACTTGTTCG+TGG | - | chr8.1:17612311-17612330 | MS.gene56873:intron | 45.0% | |
| CATGGCTCTTATACCATGTC+AGG | + | chr8.1:17614395-17614414 | None:intergenic | 45.0% | |
| CGCATGTGTTGAGATAGCTA+AGG | - | chr8.1:17613877-17613896 | MS.gene56873:intron | 45.0% | |
| CTGACATGGTATAAGAGCCA+TGG | - | chr8.1:17614393-17614412 | MS.gene56873:CDS | 45.0% | |
| GAGTGGTGAGGGAAATCATA+TGG | + | chr8.1:17614732-17614751 | None:intergenic | 45.0% | |
| GATAGCTAAGGAAATGGGTG+TGG | - | chr8.1:17613889-17613908 | MS.gene56873:intron | 45.0% | |
| GATGAACTCGACAAGAGAGA+AGG | + | chr8.1:17613269-17613288 | None:intergenic | 45.0% | |
| TTGAGAAAAAGGCCCAACGA+GGG | - | chr8.1:17612023-17612042 | MS.gene56873:CDS | 45.0% | |
| ! | AGTGATCAAGGTGTTCAACG+AGG | - | chr8.1:17614683-17614702 | MS.gene56873:CDS | 45.0% |
| ! | CCGATTTTGTTAGTACAGGC+AGG | + | chr8.1:17613076-17613095 | None:intergenic | 45.0% |
| ! | GCCTTCTGTTTCTTGCATCT+TGG | + | chr8.1:17613933-17613952 | None:intergenic | 45.0% |
| ! | TGGTGGATACAACACTCGAT+GGG | - | chr8.1:17612337-17612356 | MS.gene56873:intron | 45.0% |
| !! | ATGGTGGATACAACACTCGA+TGG | - | chr8.1:17612336-17612355 | MS.gene56873:intron | 45.0% |
| !!! | AGTGGAGCACCATTTTTTGG+AGG | + | chr8.1:17612508-17612527 | None:intergenic | 45.0% |
| AGTGGGATCTAGTGTGGATC+AGG | - | chr8.1:17614438-17614457 | MS.gene56873:CDS | 50.0% | |
| CCACCTCCAGTTTGTGAAGA+AGG | - | chr8.1:17613213-17613232 | MS.gene56873:intron | 50.0% | |
| CCTTCTTCACAAACTGGAGG+TGG | + | chr8.1:17613216-17613235 | None:intergenic | 50.0% | |
| CGACGTCCTTCTTCACAAAC+TGG | + | chr8.1:17613222-17613241 | None:intergenic | 50.0% | |
| CGTCCTTCTTCACAAACTGG+AGG | + | chr8.1:17613219-17613238 | None:intergenic | 50.0% | |
| CTAGTGATGTGGGTGACTGT+TGG | - | chr8.1:17614461-17614480 | MS.gene56873:CDS | 50.0% | |
| CTGCATTTCCATCTGGTGTC+AGG | + | chr8.1:17614650-17614669 | None:intergenic | 50.0% | |
| GTGGATCAGGCTAGTGATGT+GGG | - | chr8.1:17614451-17614470 | MS.gene56873:CDS | 50.0% | |
| TGTGGATCAGGCTAGTGATG+TGG | - | chr8.1:17614450-17614469 | MS.gene56873:CDS | 50.0% | |
| ! | ATCAAGGTGTTCAACGAGGC+AGG | - | chr8.1:17614687-17614706 | MS.gene56873:CDS | 50.0% |
| !! | ATGTTGAGTGCTGGCTGCAT+TGG | - | chr8.1:17613038-17613057 | MS.gene56873:intron | 50.0% |
| !! | GCTAACGATGCTGCTTTGTC+CGG | - | chr8.1:17612434-17612453 | MS.gene56873:intron | 50.0% |
| !! | TGTTGAGTGCTGGCTGCATT+GGG | - | chr8.1:17613039-17613058 | MS.gene56873:intron | 50.0% |
| AGAGCCATGGTTCAGCTCAG+TGG | - | chr8.1:17614406-17614425 | MS.gene56873:CDS | 55.0% | |
| AGCCATGGTTCAGCTCAGTG+GGG | - | chr8.1:17614408-17614427 | MS.gene56873:CDS | 55.0% | |
| GAGCCATGGTTCAGCTCAGT+GGG | - | chr8.1:17614407-17614426 | MS.gene56873:CDS | 55.0% | |
| TACCCCACTGAGCTGAACCA+TGG | + | chr8.1:17614413-17614432 | None:intergenic | 55.0% | |
| TTCTGCTGGAAAGAGCTCCC+AGG | + | chr8.1:17614774-17614793 | None:intergenic | 55.0% | |
| !! | GTGCTGGCTGCATTGGGTTA+AGG | - | chr8.1:17613045-17613064 | MS.gene56873:intron | 55.0% |
| AGCGGGAGTGGGATCTAGTG+TGG | - | chr8.1:17614432-17614451 | MS.gene56873:CDS | 60.0% | |
| CAGCACACTGTGAGGGCTCA+AGG | + | chr8.1:17613555-17613574 | None:intergenic | 60.0% | |
| GGGTTGCACCTGACACCAGA+TGG | - | chr8.1:17614639-17614658 | MS.gene56873:CDS | 60.0% | |
| GGTTCAGCTCAGTGGGGTAG+CGG | - | chr8.1:17614414-17614433 | MS.gene56873:CDS | 60.0% | |
| GTTCAGCTCAGTGGGGTAGC+GGG | - | chr8.1:17614415-17614434 | MS.gene56873:CDS | 60.0% | |
| TCGCTCGTTGGGCAGATCAG+AGG | + | chr8.1:17612056-17612075 | None:intergenic | 60.0% | |
| ! | AGAGGAGCGCATCCCTCGTT+GGG | + | chr8.1:17612038-17612057 | None:intergenic | 60.0% |
| CGCTCTCGCTCTCGCTCGTT+GGG | + | chr8.1:17612067-17612086 | None:intergenic | 65.0% | |
| TCGCTCTCGCTCTCGCTCGT+TGG | + | chr8.1:17612068-17612087 | None:intergenic | 65.0% | |
| ! | CAGAGGAGCGCATCCCTCGT+TGG | + | chr8.1:17612039-17612058 | None:intergenic | 65.0% |
| !! | CTCAGTGGGGTAGCGGGAGT+GGG | - | chr8.1:17614421-17614440 | MS.gene56873:CDS | 65.0% |
| !! | GCTCAGTGGGGTAGCGGGAG+TGG | - | chr8.1:17614420-17614439 | MS.gene56873:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 17612005 | 17614815 | 17612005 | ID=MS.gene56873 |
| chr8.1 | mRNA | 17612005 | 17614815 | 17612005 | ID=MS.gene56873.t1;Parent=MS.gene56873 |
| chr8.1 | exon | 17614633 | 17614815 | 17614633 | ID=MS.gene56873.t1.exon1;Parent=MS.gene56873.t1 |
| chr8.1 | CDS | 17614633 | 17614815 | 17614633 | ID=cds.MS.gene56873.t1;Parent=MS.gene56873.t1 |
| chr8.1 | exon | 17614288 | 17614506 | 17614288 | ID=MS.gene56873.t1.exon2;Parent=MS.gene56873.t1 |
| chr8.1 | CDS | 17614288 | 17614506 | 17614288 | ID=cds.MS.gene56873.t1;Parent=MS.gene56873.t1 |
| chr8.1 | exon | 17613567 | 17613643 | 17613567 | ID=MS.gene56873.t1.exon3;Parent=MS.gene56873.t1 |
| chr8.1 | CDS | 17613567 | 17613643 | 17613567 | ID=cds.MS.gene56873.t1;Parent=MS.gene56873.t1 |
| chr8.1 | exon | 17612848 | 17613012 | 17612848 | ID=MS.gene56873.t1.exon4;Parent=MS.gene56873.t1 |
| chr8.1 | CDS | 17612848 | 17613012 | 17612848 | ID=cds.MS.gene56873.t1;Parent=MS.gene56873.t1 |
| chr8.1 | exon | 17612005 | 17612185 | 17612005 | ID=MS.gene56873.t1.exon5;Parent=MS.gene56873.t1 |
| chr8.1 | CDS | 17612005 | 17612185 | 17612005 | ID=cds.MS.gene56873.t1;Parent=MS.gene56873.t1 |
| Gene Sequence |
| Protein sequence |
