Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031984.t1 | XP_003600886.1 | 99.6 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 2.70E-147 | 531.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031984.t1 | Q9SRM5 | 70.7 | 256 | 75 | 0 | 1 | 256 | 1 | 256 | 3.9e-110 | 399.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031984.t1 | G7JB85 | 99.6 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 1.9e-147 | 531.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031984 | MS.gene56873 | PPI |
| MS.gene031984 | MS.gene48374 | PPI |
| MS.gene031984 | MS.gene01667 | PPI |
| MS.gene031984 | MS.gene004221 | PPI |
| MS.gene031984 | MS.gene01668 | PPI |
| MS.gene01669 | MS.gene031984 | PPI |
| MS.gene031984 | MS.gene071406 | PPI |
| MS.gene031984 | MS.gene002547 | PPI |
| MS.gene031984 | MS.gene002548 | PPI |
| MS.gene031984 | MS.gene01523 | PPI |
| MS.gene031984 | MS.gene01526 | PPI |
| MS.gene031984 | MS.gene004220 | PPI |
| MS.gene031984 | MS.gene071405 | PPI |
| MS.gene031984 | MS.gene002546 | PPI |
| MS.gene071404 | MS.gene031984 | PPI |
| MS.gene031984 | MS.gene004219 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031984.t1 | MTR_3g070460 | 99.609 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 0.0 | 532 |
| MS.gene031984.t1 | MTR_4g016510 | 66.406 | 256 | 86 | 0 | 1 | 256 | 1 | 256 | 6.02e-128 | 363 |
| MS.gene031984.t1 | MTR_7g068530 | 62.109 | 256 | 94 | 2 | 1 | 256 | 1 | 253 | 1.81e-118 | 339 |
| MS.gene031984.t1 | MTR_7g068460 | 61.660 | 253 | 95 | 2 | 3 | 255 | 30 | 280 | 4.99e-115 | 331 |
| MS.gene031984.t1 | MTR_7g068500 | 60.079 | 253 | 99 | 2 | 3 | 255 | 29 | 279 | 8.83e-112 | 323 |
| MS.gene031984.t1 | MTR_7g068550 | 57.812 | 256 | 106 | 1 | 1 | 256 | 1 | 254 | 2.12e-110 | 318 |
| MS.gene031984.t1 | MTR_7g068470 | 60.000 | 250 | 97 | 3 | 6 | 255 | 2 | 248 | 1.38e-107 | 311 |
| MS.gene031984.t1 | MTR_7g068470 | 58.800 | 250 | 96 | 4 | 6 | 255 | 2 | 244 | 3.91e-103 | 300 |
| MS.gene031984.t1 | MTR_7g068450 | 52.549 | 255 | 116 | 3 | 6 | 256 | 2 | 255 | 4.58e-94 | 277 |
| MS.gene031984.t1 | MTR_4g016500 | 39.640 | 222 | 63 | 3 | 35 | 256 | 277 | 427 | 1.46e-45 | 158 |
| MS.gene031984.t1 | MTR_2g015500 | 36.449 | 214 | 124 | 5 | 6 | 209 | 4 | 215 | 9.14e-43 | 145 |
| MS.gene031984.t1 | MTR_2g015510 | 36.493 | 211 | 128 | 2 | 5 | 209 | 4 | 214 | 2.66e-42 | 145 |
| MS.gene031984.t1 | MTR_7g068520 | 36.400 | 250 | 60 | 5 | 6 | 255 | 3 | 153 | 6.22e-40 | 135 |
| MS.gene031984.t1 | MTR_4g105680 | 34.562 | 217 | 128 | 4 | 24 | 232 | 47 | 257 | 3.31e-34 | 124 |
| MS.gene031984.t1 | MTR_2g015480 | 33.168 | 202 | 114 | 7 | 15 | 209 | 66 | 253 | 7.81e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031984.t1 | AT3G11210 | 70.703 | 256 | 75 | 0 | 1 | 256 | 1 | 256 | 3.56e-142 | 399 |
| MS.gene031984.t1 | AT2G38180 | 61.739 | 230 | 82 | 2 | 1 | 228 | 1 | 226 | 2.79e-102 | 300 |
| MS.gene031984.t1 | AT5G62930 | 37.500 | 232 | 136 | 2 | 6 | 232 | 2 | 229 | 8.57e-55 | 177 |
| MS.gene031984.t1 | AT5G62930 | 37.500 | 232 | 136 | 2 | 6 | 232 | 28 | 255 | 1.99e-54 | 176 |
| MS.gene031984.t1 | AT5G45920 | 40.566 | 212 | 115 | 4 | 6 | 209 | 3 | 211 | 2.73e-50 | 165 |
| MS.gene031984.t1 | AT5G45920 | 40.566 | 212 | 115 | 4 | 6 | 209 | 3 | 211 | 2.73e-50 | 165 |
| MS.gene031984.t1 | AT5G45920 | 39.362 | 188 | 103 | 4 | 6 | 185 | 3 | 187 | 1.42e-41 | 141 |
| MS.gene031984.t1 | AT5G45920 | 39.362 | 188 | 103 | 4 | 6 | 185 | 3 | 187 | 1.42e-41 | 141 |
| MS.gene031984.t1 | AT5G62930 | 32.450 | 151 | 97 | 1 | 65 | 210 | 3 | 153 | 6.19e-28 | 105 |
Find 51 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTGTCATAGTTTATTT+TGG | 0.117407 | 3.4:+70120852 | MS.gene031984:CDS |
| AAAGATTCTCGTTCATATTC+AGG | 0.237645 | 3.4:+70120953 | MS.gene031984:CDS |
| TGCTCCCCTCAGCTGCTAAA+TGG | 0.269995 | 3.4:-70122500 | None:intergenic |
| CAGAGAGGTTCAGTGGGATT+AGG | 0.324071 | 3.4:+70122683 | MS.gene031984:CDS |
| AGAGATATTGAAAGTACTTA+AGG | 0.366404 | 3.4:+70122536 | MS.gene031984:CDS |
| GGAAAACTTGATGGAGGACT+TGG | 0.366424 | 3.4:-70120033 | None:intergenic |
| ATACCTTTGGGAAAACTTGA+TGG | 0.386117 | 3.4:-70120042 | None:intergenic |
| CAGTTACAGCCATAGTGGTT+GGG | 0.391779 | 3.4:+70118846 | MS.gene031984:CDS |
| AGACCTCAATTTGTTCTCTT+CGG | 0.393518 | 3.4:+70118805 | MS.gene031984:CDS |
| TCCATGGGTCCTCACTCATC+TGG | 0.396852 | 3.4:+70120885 | MS.gene031984:CDS |
| CACTACAAAGTATAGATGAT+TGG | 0.413474 | 3.4:+70121911 | MS.gene031984:CDS |
| GGTCCTCACTCATCTGGTCT+AGG | 0.440601 | 3.4:+70120891 | MS.gene031984:CDS |
| AGAACAAATTGAGGTCTTGC+AGG | 0.448548 | 3.4:-70118799 | None:intergenic |
| GAAAGGAACCCCAACCACTA+TGG | 0.455649 | 3.4:-70118855 | None:intergenic |
| TACAAGCGTCAGAATAGCTT+CGG | 0.460418 | 3.4:-70121840 | None:intergenic |
| ATTGGAAGCCATGCCTCCAC+TGG | 0.465238 | 3.4:+70122565 | MS.gene031984:CDS |
| ACTACAAAGTATAGATGATT+GGG | 0.472047 | 3.4:+70121912 | MS.gene031984:CDS |
| AGAATAGATGTCAGAAAGAA+AGG | 0.473416 | 3.4:-70118872 | None:intergenic |
| TATGATCTTGTTGCTGCTGA+TGG | 0.480251 | 3.4:+70122624 | MS.gene031984:CDS |
| AGTTACAGCCATAGTGGTTG+GGG | 0.481840 | 3.4:+70118847 | MS.gene031984:CDS |
| TTCTGACATCTATTCTCGTA+AGG | 0.485495 | 3.4:+70118879 | MS.gene031984:CDS |
| AAGTACTTAAGGAGGCTGAT+TGG | 0.489555 | 3.4:+70122547 | MS.gene031984:CDS |
| ATAAAGCTATGCAAGGAACT+TGG | 0.525996 | 3.4:+70121862 | MS.gene031984:CDS |
| CAGCTCAGTTACAGCCATAG+TGG | 0.530252 | 3.4:+70118841 | MS.gene031984:CDS |
| CTCTCTGTGAAAAGTCCACT+CGG | 0.533550 | 3.4:-70122667 | None:intergenic |
| TCAGTTACAGCCATAGTGGT+TGG | 0.535752 | 3.4:+70118845 | MS.gene031984:CDS |
| TTTGCGATATATTCTTCAAG+TGG | 0.536290 | 3.4:-70120924 | None:intergenic |
| ACCAGATGAGTGAGGACCCA+TGG | 0.547376 | 3.4:-70120886 | None:intergenic |
| ATGATCTTGTTGCTGCTGAT+GGG | 0.556497 | 3.4:+70122625 | MS.gene031984:CDS |
| TTTGGAGGCAATGATTCCAT+GGG | 0.556589 | 3.4:+70120870 | MS.gene031984:CDS |
| GATCCGAAGAGAACAAATTG+AGG | 0.565485 | 3.4:-70118808 | None:intergenic |
| AAATAAACTATGACAAGAGA+AGG | 0.569239 | 3.4:-70120849 | None:intergenic |
| CTGTGAAAAGTCCACTCGGA+AGG | 0.571490 | 3.4:-70122663 | None:intergenic |
| TATTCTTCAAGTGGCACATG+AGG | 0.571651 | 3.4:-70120915 | None:intergenic |
| ATAGACTTCCAGTGGAGGCA+TGG | 0.576601 | 3.4:-70122573 | None:intergenic |
| GGTATCCATTTAGCAGCTGA+GGG | 0.579189 | 3.4:+70122495 | MS.gene031984:CDS |
| TGGTATCCATTTAGCAGCTG+AGG | 0.586119 | 3.4:+70122494 | MS.gene031984:CDS |
| AGCTGAGGGGAGCAAAATTG+TGG | 0.595319 | 3.4:+70122509 | MS.gene031984:CDS |
| CGCTTGTATAAAGCTATGCA+AGG | 0.603226 | 3.4:+70121855 | MS.gene031984:CDS |
| ATATTGTTACGAGGATACTA+CGG | 0.604736 | 3.4:+70119989 | MS.gene031984:CDS |
| GATATTGAAAGTACTTAAGG+AGG | 0.616083 | 3.4:+70122539 | MS.gene031984:CDS |
| TGTTACGAGGATACTACGGA+TGG | 0.628648 | 3.4:+70119993 | MS.gene031984:CDS |
| CAGTGTGCATAGACTTCCAG+TGG | 0.638815 | 3.4:-70122581 | None:intergenic |
| ATTCTTCAAGTGGCACATGA+GGG | 0.639837 | 3.4:-70120914 | None:intergenic |
| CCTTTGGGAAAACTTGATGG+AGG | 0.663764 | 3.4:-70120039 | None:intergenic |
| GCTGTAACTGAGCTGAACGA+TGG | 0.666914 | 3.4:-70118833 | None:intergenic |
| TAGGCAGATATATTGTTACG+AGG | 0.680324 | 3.4:+70119980 | MS.gene031984:intron |
| TGTGCATAGACTTCCAGTGG+AGG | 0.686536 | 3.4:-70122578 | None:intergenic |
| GAACATTGAATCCTTCCGAG+TGG | 0.687868 | 3.4:+70122652 | MS.gene031984:CDS |
| GGGCCTAGACCAGATGAGTG+AGG | 0.694487 | 3.4:-70120894 | None:intergenic |
| GTATCCATTTAGCAGCTGAG+GGG | 0.731566 | 3.4:+70122496 | MS.gene031984:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTGTATATTTCAAAA+AGG | - | chr3.4:70119037-70119056 | None:intergenic | 10.0% |
| !!! | AATATAATTTTGAAAACTTT+TGG | + | chr3.4:70119112-70119131 | MS.gene031984:intron | 10.0% |
| !!! | ATATAATTTTGAAAACTTTT+GGG | + | chr3.4:70119113-70119132 | MS.gene031984:intron | 10.0% |
| !!! | TAAGAGTATTAAATTATTAA+TGG | - | chr3.4:70119815-70119834 | None:intergenic | 10.0% |
| !!! | TATTTTAAAAAACAAAAAGA+AGG | + | chr3.4:70119455-70119474 | MS.gene031984:intron | 10.0% |
| !!! | TTGAAATATACAATTATTTT+GGG | + | chr3.4:70119039-70119058 | MS.gene031984:intron | 10.0% |
| !!! | TTTGAAATATACAATTATTT+TGG | + | chr3.4:70119038-70119057 | MS.gene031984:intron | 10.0% |
| !!! | TTTTTATTTTAAATATGCAT+AGG | + | chr3.4:70120352-70120371 | MS.gene031984:intron | 10.0% |
| !! | AAAATAAAAATCATATACGA+TGG | - | chr3.4:70120342-70120361 | None:intergenic | 15.0% |
| !! | AATAAAATTGATTAAGAAAG+AGG | - | chr3.4:70121967-70121986 | None:intergenic | 15.0% |
| !! | ATAATTTAATACTCTTACAT+TGG | + | chr3.4:70119818-70119837 | MS.gene031984:intron | 15.0% |
| !! | TATATTCTTCATCATTATTA+AGG | - | chr3.4:70121502-70121521 | None:intergenic | 15.0% |
| !! | TTTCTTGTGAAATATATTAA+AGG | + | chr3.4:70122356-70122375 | MS.gene031984:intron | 15.0% |
| !!! | AAAAACTTGTTCTTTTTAAA+CGG | - | chr3.4:70119666-70119685 | None:intergenic | 15.0% |
| !!! | AAAATACTAGATTAATGTTT+TGG | + | chr3.4:70118982-70119001 | MS.gene031984:intron | 15.0% |
| !!! | AAATACTAGATTAATGTTTT+GGG | + | chr3.4:70118983-70119002 | MS.gene031984:intron | 15.0% |
| !!! | AAGATTTAAAAAAAAGTACA+AGG | - | chr3.4:70119293-70119312 | None:intergenic | 15.0% |
| !!! | ATAACTTGTAAAAAAGAATA+TGG | + | chr3.4:70122408-70122427 | MS.gene031984:intron | 15.0% |
| !!! | TAACTTGTAAAAAAGAATAT+GGG | + | chr3.4:70122409-70122428 | MS.gene031984:intron | 15.0% |
| !!! | TATAATTTTGAAAACTTTTG+GGG | + | chr3.4:70119114-70119133 | MS.gene031984:intron | 15.0% |
| !! | ACAAAAAAAAAATTCACAGT+TGG | - | chr3.4:70119587-70119606 | None:intergenic | 20.0% |
| !! | TACTATAAGAAAATCAATCA+TGG | - | chr3.4:70119362-70119381 | None:intergenic | 20.0% |
| !! | TTATATTTAGCAATTTGAGA+AGG | - | chr3.4:70119493-70119512 | None:intergenic | 20.0% |
| !! | TTCTCAAATTGCTAAATATA+AGG | + | chr3.4:70119492-70119511 | MS.gene031984:intron | 20.0% |
| !!! | GAAAGAGAAAAATATGTTTT+AGG | - | chr3.4:70121703-70121722 | None:intergenic | 20.0% |
| !!! | GATGTAAAATTACTCATTTT+AGG | + | chr3.4:70119961-70119980 | MS.gene031984:intron | 20.0% |
| !!! | GTGAATTTTTTTTTTGTTTG+TGG | + | chr3.4:70119590-70119609 | MS.gene031984:intron | 20.0% |
| !!! | TCTTATAGTATTTCTGTTAT+TGG | + | chr3.4:70119372-70119391 | MS.gene031984:intron | 20.0% |
| !!! | TTTCTAAAGACACAATATTA+AGG | + | chr3.4:70120195-70120214 | MS.gene031984:intron | 20.0% |
| ! | AAATAAACTATGACAAGAGA+AGG | - | chr3.4:70120852-70120871 | None:intergenic | 25.0% |
| ! | AAATTAGGTACAATACCTTT+GGG | - | chr3.4:70120057-70120076 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAAATCATGATC+AGG | - | chr3.4:70119882-70119901 | None:intergenic | 25.0% |
| ! | AATACATGGATAATAGTTTG+AGG | + | chr3.4:70121350-70121369 | MS.gene031984:intron | 25.0% |
| ! | ACTACAAAGTATAGATGATT+GGG | + | chr3.4:70121912-70121931 | MS.gene031984:CDS | 25.0% |
| ! | ACTTGATATTTCTTGGTATT+TGG | - | chr3.4:70121993-70122012 | None:intergenic | 25.0% |
| ! | ATATATTCCATTACATTGGA+AGG | - | chr3.4:70121110-70121129 | None:intergenic | 25.0% |
| ! | ATTAAGCTGTTTATCAAAAC+AGG | + | chr3.4:70120735-70120754 | MS.gene031984:intron | 25.0% |
| ! | CAAACAATAACTTAGACTAA+AGG | - | chr3.4:70122187-70122206 | None:intergenic | 25.0% |
| ! | CAAATTGCTAAATATAAGGT+TGG | + | chr3.4:70119496-70119515 | MS.gene031984:intron | 25.0% |
| ! | CAAGATATATTCCATTACAT+TGG | - | chr3.4:70121114-70121133 | None:intergenic | 25.0% |
| ! | CATCAAAGTTAATATTATGG+AGG | + | chr3.4:70119915-70119934 | MS.gene031984:intron | 25.0% |
| ! | CGTCATCAAAGTTAATATTA+TGG | + | chr3.4:70119912-70119931 | MS.gene031984:intron | 25.0% |
| ! | CTAAGTTTGAGTAAAATACA+TGG | + | chr3.4:70121336-70121355 | MS.gene031984:intron | 25.0% |
| ! | CTAAGTTTGTGTAAAATACA+TGG | + | chr3.4:70121289-70121308 | MS.gene031984:intron | 25.0% |
| ! | CTTGTATTCAACATGATTTA+TGG | + | chr3.4:70120128-70120147 | MS.gene031984:intron | 25.0% |
| ! | GAGATAGTAAGTAAAACATA+TGG | - | chr3.4:70120470-70120489 | None:intergenic | 25.0% |
| ! | GTGAGACAAAAATTATTGTA+TGG | - | chr3.4:70120807-70120826 | None:intergenic | 25.0% |
| ! | GTTGAAATAATCTATGGAAA+CGG | + | chr3.4:70120551-70120570 | MS.gene031984:intron | 25.0% |
| ! | TAAAACAGTAACAAGTCAAA+CGG | + | chr3.4:70121408-70121427 | MS.gene031984:intron | 25.0% |
| ! | TTAAGCTGTTTATCAAAACA+GGG | + | chr3.4:70120736-70120755 | MS.gene031984:intron | 25.0% |
| ! | TTAATACTCTTACATTGGTA+TGG | + | chr3.4:70119823-70119842 | MS.gene031984:intron | 25.0% |
| ! | TTGATATTCTAGTGTTTAGA+CGG | + | chr3.4:70119398-70119417 | MS.gene031984:intron | 25.0% |
| !! | GATATCAATTTTGTCTCTTA+CGG | + | chr3.4:70122227-70122246 | MS.gene031984:intron | 25.0% |
| !! | GTTTTACTTACTATCTCTTA+GGG | + | chr3.4:70120473-70120492 | MS.gene031984:intron | 25.0% |
| !! | TATTAATGGAGTATTTGTAC+AGG | - | chr3.4:70119801-70119820 | None:intergenic | 25.0% |
| !! | TCTCTTGTCATAGTTTATTT+TGG | + | chr3.4:70120852-70120871 | MS.gene031984:CDS | 25.0% |
| !! | TGTTTTACTTACTATCTCTT+AGG | + | chr3.4:70120472-70120491 | MS.gene031984:intron | 25.0% |
| !! | TTGTGTCTTTAGAAATTAAG+CGG | - | chr3.4:70120190-70120209 | None:intergenic | 25.0% |
| !!! | AAAATTGCACTGATTAAGAA+AGG | - | chr3.4:70121790-70121809 | None:intergenic | 25.0% |
| !!! | AGAGATATTGAAAGTACTTA+AGG | + | chr3.4:70122536-70122555 | MS.gene031984:CDS | 25.0% |
| !!! | AGCTTGTTTCTATAAGTTTA+AGG | + | chr3.4:70120600-70120619 | MS.gene031984:intron | 25.0% |
| !!! | CAGAAACATTTCATTTTTCA+TGG | - | chr3.4:70120435-70120454 | None:intergenic | 25.0% |
| !!! | TCTTTTTTACAAGTTATGTC+AGG | - | chr3.4:70122405-70122424 | None:intergenic | 25.0% |
| AAAAAAATTCACAGTTGGAG+TGG | - | chr3.4:70119582-70119601 | None:intergenic | 30.0% | |
| AAAAAATTCACAGTTGGAGT+GGG | - | chr3.4:70119581-70119600 | None:intergenic | 30.0% | |
| AAACAAGCTGAAAACAGTTA+TGG | - | chr3.4:70120589-70120608 | None:intergenic | 30.0% | |
| AAAGATTCTCGTTCATATTC+AGG | + | chr3.4:70120953-70120972 | MS.gene031984:CDS | 30.0% | |
| AAGGTTACTTCAATGATGTT+AGG | + | chr3.4:70122286-70122305 | MS.gene031984:intron | 30.0% | |
| AGAAAAGTTAGTGAAGGATT+TGG | - | chr3.4:70122044-70122063 | None:intergenic | 30.0% | |
| AGAATAGATGTCAGAAAGAA+AGG | - | chr3.4:70118875-70118894 | None:intergenic | 30.0% | |
| AGATATCTATCTCCAATACT+TGG | - | chr3.4:70121026-70121045 | None:intergenic | 30.0% | |
| AGTGAAAAATGACATGTTGT+AGG | + | chr3.4:70121449-70121468 | MS.gene031984:intron | 30.0% | |
| ATATTGTTACGAGGATACTA+CGG | + | chr3.4:70119989-70120008 | MS.gene031984:CDS | 30.0% | |
| ATTAGGCAATTGTTCGTTAT+GGG | - | chr3.4:70120272-70120291 | None:intergenic | 30.0% | |
| CAAAAATTATTGTATGGTGC+AGG | - | chr3.4:70120801-70120820 | None:intergenic | 30.0% | |
| CAAATTAGGTACAATACCTT+TGG | - | chr3.4:70120058-70120077 | None:intergenic | 30.0% | |
| CACTACAAAGTATAGATGAT+TGG | + | chr3.4:70121911-70121930 | MS.gene031984:CDS | 30.0% | |
| GAATATATCTTGTCTTACCT+GGG | + | chr3.4:70121122-70121141 | MS.gene031984:intron | 30.0% | |
| GAGACTGTTGAAATAATCTA+TGG | + | chr3.4:70120545-70120564 | MS.gene031984:intron | 30.0% | |
| GTAAGTAGTAACTAGTAGTA+AGG | + | chr3.4:70119136-70119155 | MS.gene031984:intron | 30.0% | |
| GTATATTTCAAAAAGGCAGA+AGG | - | chr3.4:70119030-70119049 | None:intergenic | 30.0% | |
| GTATTCAACATGATTTATGG+TGG | + | chr3.4:70120131-70120150 | MS.gene031984:intron | 30.0% | |
| TACGCATAGATAAACTTGAT+TGG | - | chr3.4:70120234-70120253 | None:intergenic | 30.0% | |
| TACTTGAGAAAAGTTAGTGA+AGG | - | chr3.4:70122050-70122069 | None:intergenic | 30.0% | |
| TAGAATAGTATATACGCTAC+CGG | - | chr3.4:70120301-70120320 | None:intergenic | 30.0% | |
| TGGGCTATGTTTAAGAAAAT+GGG | + | chr3.4:70119058-70119077 | MS.gene031984:intron | 30.0% | |
| TGTTAAACCTTCCAATGTAA+TGG | + | chr3.4:70121100-70121119 | MS.gene031984:intron | 30.0% | |
| TTCAATGAATTATGCAGTGA+TGG | + | chr3.4:70122474-70122493 | MS.gene031984:intron | 30.0% | |
| TTGGGCTATGTTTAAGAAAA+TGG | + | chr3.4:70119057-70119076 | MS.gene031984:intron | 30.0% | |
| TTTGCGATATATTCTTCAAG+TGG | - | chr3.4:70120927-70120946 | None:intergenic | 30.0% | |
| ! | GTATGTCACTTGATATTTCT+TGG | - | chr3.4:70122000-70122019 | None:intergenic | 30.0% |
| ! | TAATTTTTGTCTCACTTCAC+AGG | + | chr3.4:70120812-70120831 | MS.gene031984:intron | 30.0% |
| ! | TGCTAAATATAAGGTTGGTT+TGG | + | chr3.4:70119501-70119520 | MS.gene031984:intron | 30.0% |
| ! | TTACTCAAACTTAGTCTTCA+GGG | - | chr3.4:70121330-70121349 | None:intergenic | 30.0% |
| ! | TTTACTCAAACTTAGTCTTC+AGG | - | chr3.4:70121331-70121350 | None:intergenic | 30.0% |
| !! | AAAATATGTTTTAGGCTACC+TGG | - | chr3.4:70121695-70121714 | None:intergenic | 30.0% |
| !! | CAAAGGTATTGTACCTAATT+TGG | + | chr3.4:70120056-70120075 | MS.gene031984:intron | 30.0% |
| !! | GATATTGAAAGTACTTAAGG+AGG | + | chr3.4:70122539-70122558 | MS.gene031984:CDS | 30.0% |
| !!! | CTTGTCATAGTTTATTTTGG+AGG | + | chr3.4:70120855-70120874 | MS.gene031984:CDS | 30.0% |
| AAAAATTCACAGTTGGAGTG+GGG | - | chr3.4:70119580-70119599 | None:intergenic | 35.0% | |
| AATCACTATGAGCATCTCTT+AGG | - | chr3.4:70119765-70119784 | None:intergenic | 35.0% | |
| ACAACATTGAAACTCACTAC+TGG | - | chr3.4:70119225-70119244 | None:intergenic | 35.0% | |
| ACTATCTCTTAGGGTATGTT+TGG | + | chr3.4:70120482-70120501 | MS.gene031984:intron | 35.0% | |
| ATAAAGCTATGCAAGGAACT+TGG | + | chr3.4:70121862-70121881 | MS.gene031984:CDS | 35.0% | |
| ATGCAGATATCTGCCAAATT+AGG | - | chr3.4:70120072-70120091 | None:intergenic | 35.0% | |
| CAACATTGAAACTCACTACT+GGG | - | chr3.4:70119224-70119243 | None:intergenic | 35.0% | |
| CATGTTGTAGGATGAAAGAA+TGG | + | chr3.4:70121461-70121480 | MS.gene031984:intron | 35.0% | |
| CCAACATCAATTCTTTCCTT+GGG | - | chr3.4:70119187-70119206 | None:intergenic | 35.0% | |
| CCAAGGAAAGAATTGATGTT+GGG | + | chr3.4:70119185-70119204 | MS.gene031984:intron | 35.0% | |
| GATTAGGCAATTGTTCGTTA+TGG | - | chr3.4:70120273-70120292 | None:intergenic | 35.0% | |
| GATTTAAGGATTGGAGTGAT+AGG | + | chr3.4:70119537-70119556 | MS.gene031984:intron | 35.0% | |
| GGAATATATCTTGTCTTACC+TGG | + | chr3.4:70121121-70121140 | MS.gene031984:intron | 35.0% | |
| GTGTACTCAATGATGAAACA+TGG | + | chr3.4:70121180-70121199 | MS.gene031984:intron | 35.0% | |
| TAACCTTAAAACCGTCTTTC+CGG | - | chr3.4:70122273-70122292 | None:intergenic | 35.0% | |
| TACAAGTTATGTCAGGTTAG+AGG | - | chr3.4:70122398-70122417 | None:intergenic | 35.0% | |
| TAGGCAGATATATTGTTACG+AGG | + | chr3.4:70119980-70119999 | MS.gene031984:intron | 35.0% | |
| TAGGGTGAAGATTTAAGGAT+TGG | + | chr3.4:70119528-70119547 | MS.gene031984:intron | 35.0% | |
| TATCTATCTCCAATACTTGG+AGG | - | chr3.4:70121023-70121042 | None:intergenic | 35.0% | |
| TCAAGTTTATCTATGCGTAG+TGG | + | chr3.4:70120235-70120254 | MS.gene031984:intron | 35.0% | |
| TCTATATAACCAACTCCTTC+TGG | + | chr3.4:70122153-70122172 | MS.gene031984:intron | 35.0% | |
| TTCTGACATCTATTCTCGTA+AGG | + | chr3.4:70118879-70118898 | MS.gene031984:CDS | 35.0% | |
| ! | AGACCTCAATTTGTTCTCTT+CGG | + | chr3.4:70118805-70118824 | MS.gene031984:CDS | 35.0% |
| ! | ATAAGCGTTTGTTGCACAAA+TGG | + | chr3.4:70120697-70120716 | MS.gene031984:intron | 35.0% |
| ! | ATACCTTTGGGAAAACTTGA+TGG | - | chr3.4:70120045-70120064 | None:intergenic | 35.0% |
| ! | GTACAAGGTCATTACTCTTT+TGG | - | chr3.4:70119278-70119297 | None:intergenic | 35.0% |
| ! | TAAGCGTTTGTTGCACAAAT+GGG | + | chr3.4:70120698-70120717 | MS.gene031984:intron | 35.0% |
| ! | TACTCAAACTTAGTCTTCAG+GGG | - | chr3.4:70121329-70121348 | None:intergenic | 35.0% |
| ! | TGTGTGCAACGAAACAATTT+TGG | - | chr3.4:70121152-70121171 | None:intergenic | 35.0% |
| !! | ACTGACCTTATCTTTTTGAG+TGG | + | chr3.4:70119250-70119269 | MS.gene031984:intron | 35.0% |
| !!! | CAGTGCAATTTTTAGTGAGT+TGG | + | chr3.4:70121798-70121817 | MS.gene031984:intron | 35.0% |
| !!! | CTGACCTTATCTTTTTGAGT+GGG | + | chr3.4:70119251-70119270 | MS.gene031984:intron | 35.0% |
| !!! | TCTTGTTTTCATCTCTTACG+TGG | + | chr3.4:70118930-70118949 | MS.gene031984:intron | 35.0% |
| AACCTTAAAACCGTCTTTCC+GGG | - | chr3.4:70122272-70122291 | None:intergenic | 40.0% | |
| AAGTACTTAAGGAGGCTGAT+TGG | + | chr3.4:70122547-70122566 | MS.gene031984:CDS | 40.0% | |
| AAGTGCCTATTGTAGCTTGA+GGG | - | chr3.4:70119164-70119183 | None:intergenic | 40.0% | |
| AATAGTATATACGCTACCGG+AGG | - | chr3.4:70120298-70120317 | None:intergenic | 40.0% | |
| AATTATTGTATGGTGCAGGC+AGG | - | chr3.4:70120797-70120816 | None:intergenic | 40.0% | |
| ACAATTGCCTAATCTTCCTC+CGG | + | chr3.4:70120279-70120298 | MS.gene031984:intron | 40.0% | |
| AGAACAAATTGAGGTCTTGC+AGG | - | chr3.4:70118802-70118821 | None:intergenic | 40.0% | |
| AGTAACAAGTCAAACGGATG+AGG | + | chr3.4:70121414-70121433 | MS.gene031984:intron | 40.0% | |
| ATATAACCAACTCCTTCTGG+TGG | + | chr3.4:70122156-70122175 | MS.gene031984:intron | 40.0% | |
| ATGATCTTGTTGCTGCTGAT+GGG | + | chr3.4:70122625-70122644 | MS.gene031984:CDS | 40.0% | |
| ATTCTTCAAGTGGCACATGA+GGG | - | chr3.4:70120917-70120936 | None:intergenic | 40.0% | |
| CAAGACATGTTGCAATAACG+AGG | - | chr3.4:70119700-70119719 | None:intergenic | 40.0% | |
| CAATACTTGGAGGACACTAA+TGG | - | chr3.4:70121013-70121032 | None:intergenic | 40.0% | |
| CAGGTTAGAGGACACTAAAA+GGG | - | chr3.4:70122386-70122405 | None:intergenic | 40.0% | |
| CATTAGTGTCCTCCAAGTAT+TGG | + | chr3.4:70121011-70121030 | MS.gene031984:intron | 40.0% | |
| CCCAACATCAATTCTTTCCT+TGG | - | chr3.4:70119188-70119207 | None:intergenic | 40.0% | |
| CCCAAGGAAAGAATTGATGT+TGG | + | chr3.4:70119184-70119203 | MS.gene031984:intron | 40.0% | |
| CGCTTGTATAAAGCTATGCA+AGG | + | chr3.4:70121855-70121874 | MS.gene031984:CDS | 40.0% | |
| CTCGTTATTGCAACATGTCT+TGG | + | chr3.4:70119698-70119717 | MS.gene031984:intron | 40.0% | |
| CTGCACGAACTTATACAAAC+AGG | - | chr3.4:70120399-70120418 | None:intergenic | 40.0% | |
| CTGTTTGTATAAGTTCGTGC+AGG | + | chr3.4:70120397-70120416 | MS.gene031984:intron | 40.0% | |
| GATCCGAAGAGAACAAATTG+AGG | - | chr3.4:70118811-70118830 | None:intergenic | 40.0% | |
| GTAACAAGTCAAACGGATGA+GGG | + | chr3.4:70121415-70121434 | MS.gene031984:intron | 40.0% | |
| TACAAGCGTCAGAATAGCTT+CGG | - | chr3.4:70121843-70121862 | None:intergenic | 40.0% | |
| TAGGATTACCAGCTCTACAT+TGG | + | chr3.4:70120371-70120390 | MS.gene031984:intron | 40.0% | |
| TATAACCAACTCCTTCTGGT+GGG | + | chr3.4:70122157-70122176 | MS.gene031984:intron | 40.0% | |
| TATGATCTTGTTGCTGCTGA+TGG | + | chr3.4:70122624-70122643 | MS.gene031984:CDS | 40.0% | |
| TATTCTTCAAGTGGCACATG+AGG | - | chr3.4:70120918-70120937 | None:intergenic | 40.0% | |
| TCAGGTTAGAGGACACTAAA+AGG | - | chr3.4:70122387-70122406 | None:intergenic | 40.0% | |
| TCGATGCTTTCTTTGCTAGA+TGG | + | chr3.4:70122082-70122101 | MS.gene031984:intron | 40.0% | |
| TGGCAAATATGTGTGTGAAG+TGG | + | chr3.4:70119843-70119862 | MS.gene031984:intron | 40.0% | |
| TGGTCCCACTCAAAAAGATA+AGG | - | chr3.4:70119258-70119277 | None:intergenic | 40.0% | |
| TTTGGAGGCAATGATTCCAT+GGG | + | chr3.4:70120870-70120889 | MS.gene031984:CDS | 40.0% | |
| ! | AAGCGTTTGTTGCACAAATG+GGG | + | chr3.4:70120699-70120718 | MS.gene031984:intron | 40.0% |
| ! | ACTCAAACTTAGTCTTCAGG+GGG | - | chr3.4:70121328-70121347 | None:intergenic | 40.0% |
| ! | GTGTCTAGGGTGAAGATTTA+AGG | + | chr3.4:70119523-70119542 | MS.gene031984:intron | 40.0% |
| ! | GTTCGTTATGGGTTTTTGTC+CGG | - | chr3.4:70120261-70120280 | None:intergenic | 40.0% |
| ! | TCAGTTTTGCAGTTTGTACC+CGG | + | chr3.4:70122251-70122270 | MS.gene031984:intron | 40.0% |
| ! | TGATACGTGTCTTTTCAGAG+AGG | - | chr3.4:70121624-70121643 | None:intergenic | 40.0% |
| ! | TTTTCACAGAGAGGTTCAGT+GGG | + | chr3.4:70122677-70122696 | MS.gene031984:CDS | 40.0% |
| !! | ACTTTTTCTTCATGGACAGG+AGG | - | chr3.4:70121661-70121680 | None:intergenic | 40.0% |
| !! | ATAAGGTTGGTTTGGTGTCT+AGG | + | chr3.4:70119509-70119528 | MS.gene031984:intron | 40.0% |
| !! | CATGATTTATGGTGGATGCA+CGG | + | chr3.4:70120139-70120158 | MS.gene031984:intron | 40.0% |
| !! | GAAACAATTTTGGAGAACCC+AGG | - | chr3.4:70121142-70121161 | None:intergenic | 40.0% |
| !! | TAAGGTTGGTTTGGTGTCTA+GGG | + | chr3.4:70119510-70119529 | MS.gene031984:intron | 40.0% |
| !! | TTGATGACGAGAAGCAAGAA+AGG | - | chr3.4:70119901-70119920 | None:intergenic | 40.0% |
| !! | TTTTGGAGGCAATGATTCCA+TGG | + | chr3.4:70120869-70120888 | MS.gene031984:CDS | 40.0% |
| AGTGCCTATTGTAGCTTGAG+GGG | - | chr3.4:70119163-70119182 | None:intergenic | 45.0% | |
| AGTTACAGCCATAGTGGTTG+GGG | + | chr3.4:70118847-70118866 | MS.gene031984:CDS | 45.0% | |
| CAGTTACAGCCATAGTGGTT+GGG | + | chr3.4:70118846-70118865 | MS.gene031984:CDS | 45.0% | |
| CTCTCTGTGAAAAGTCCACT+CGG | - | chr3.4:70122670-70122689 | None:intergenic | 45.0% | |
| GAACATTGAATCCTTCCGAG+TGG | + | chr3.4:70122652-70122671 | MS.gene031984:CDS | 45.0% | |
| GCTCATAGTGATTGCAGAGT+AGG | + | chr3.4:70119772-70119791 | MS.gene031984:intron | 45.0% | |
| GGAAAACTTGATGGAGGACT+TGG | - | chr3.4:70120036-70120055 | None:intergenic | 45.0% | |
| GGTATCCATTTAGCAGCTGA+GGG | + | chr3.4:70122495-70122514 | MS.gene031984:CDS | 45.0% | |
| GTAACCGTTAGCATCACACT+CGG | - | chr3.4:70119625-70119644 | None:intergenic | 45.0% | |
| GTATCCATTTAGCAGCTGAG+GGG | + | chr3.4:70122496-70122515 | MS.gene031984:CDS | 45.0% | |
| GTTTATCTATGCGTAGTGGC+CGG | + | chr3.4:70120239-70120258 | MS.gene031984:intron | 45.0% | |
| TCAGTTACAGCCATAGTGGT+TGG | + | chr3.4:70118845-70118864 | MS.gene031984:CDS | 45.0% | |
| TGCACAAATGGGGTTACAGA+CGG | + | chr3.4:70120709-70120728 | MS.gene031984:intron | 45.0% | |
| TGGTATCCATTTAGCAGCTG+AGG | + | chr3.4:70122494-70122513 | MS.gene031984:CDS | 45.0% | |
| TGTTACGAGGATACTACGGA+TGG | + | chr3.4:70119993-70120012 | MS.gene031984:CDS | 45.0% | |
| ! | CCTCCATCAAGTTTTCCCAA+AGG | + | chr3.4:70120039-70120058 | MS.gene031984:CDS | 45.0% |
| ! | CCTTTGGGAAAACTTGATGG+AGG | - | chr3.4:70120042-70120061 | None:intergenic | 45.0% |
| ! | CTAAAGGTTTTCCCACCAGA+AGG | - | chr3.4:70122171-70122190 | None:intergenic | 45.0% |
| ! | CTCAAACTTAGTCTTCAGGG+GGG | - | chr3.4:70121327-70121346 | None:intergenic | 45.0% |
| ! | CTTTTCACAGAGAGGTTCAG+TGG | + | chr3.4:70122676-70122695 | MS.gene031984:CDS | 45.0% |
| ! | GAAGTGCCTATTGTAGCTTG+AGG | - | chr3.4:70119165-70119184 | None:intergenic | 45.0% |
| ! | GTCCATGAAGAAAAAGTGCG+CGG | + | chr3.4:70121664-70121683 | MS.gene031984:CDS | 45.0% |
| ! | TACCCGGAAAGACGGTTTTA+AGG | + | chr3.4:70122267-70122286 | MS.gene031984:intron | 45.0% |
| ! | TCAAACTTAGTCTTCAGGGG+GGG | - | chr3.4:70121326-70121345 | None:intergenic | 45.0% |
| !!! | CGCACTTTTTCTTCATGGAC+AGG | - | chr3.4:70121664-70121683 | None:intergenic | 45.0% |
| !!! | TTCCGCGCACTTTTTCTTCA+TGG | - | chr3.4:70121669-70121688 | None:intergenic | 45.0% |
| !!! | ATTTTATGAATTTTTTTTTT+TGG | - | chr3.4:70121264-70121283 | None:intergenic | 5.0% |
| AACAGGTGCCAATGTAGAGC+TGG | - | chr3.4:70120382-70120401 | None:intergenic | 50.0% | |
| AGCTGAGGGGAGCAAAATTG+TGG | + | chr3.4:70122509-70122528 | MS.gene031984:CDS | 50.0% | |
| AGGTCCCCTCAAGCTACAAT+AGG | + | chr3.4:70119156-70119175 | MS.gene031984:intron | 50.0% | |
| ATAGACTTCCAGTGGAGGCA+TGG | - | chr3.4:70122576-70122595 | None:intergenic | 50.0% | |
| CACTCCGAGTGTGATGCTAA+CGG | + | chr3.4:70119618-70119637 | MS.gene031984:intron | 50.0% | |
| CAGCTCAGTTACAGCCATAG+TGG | + | chr3.4:70118841-70118860 | MS.gene031984:CDS | 50.0% | |
| CAGTGTGCATAGACTTCCAG+TGG | - | chr3.4:70122584-70122603 | None:intergenic | 50.0% | |
| CTCTTAGGAGAATGCGAGGA+AGG | - | chr3.4:70119750-70119769 | None:intergenic | 50.0% | |
| CTGTGAAAAGTCCACTCGGA+AGG | - | chr3.4:70122666-70122685 | None:intergenic | 50.0% | |
| GAAAGGAACCCCAACCACTA+TGG | - | chr3.4:70118858-70118877 | None:intergenic | 50.0% | |
| GCAGTTTGTACCCGGAAAGA+CGG | + | chr3.4:70122259-70122278 | MS.gene031984:intron | 50.0% | |
| GCATCTCTTAGGAGAATGCG+AGG | - | chr3.4:70119754-70119773 | None:intergenic | 50.0% | |
| GCTACAATAGGCACTTCCCA+AGG | + | chr3.4:70119168-70119187 | MS.gene031984:intron | 50.0% | |
| GCTGTAACTGAGCTGAACGA+TGG | - | chr3.4:70118836-70118855 | None:intergenic | 50.0% | |
| TACGCTACCGGAGGAAGATT+AGG | - | chr3.4:70120289-70120308 | None:intergenic | 50.0% | |
| TGGAGTGATAGGAAGACCGA+GGG | + | chr3.4:70119548-70119567 | MS.gene031984:intron | 50.0% | |
| TGTGCATAGACTTCCAGTGG+AGG | - | chr3.4:70122581-70122600 | None:intergenic | 50.0% | |
| TTGGAGTGATAGGAAGACCG+AGG | + | chr3.4:70119547-70119566 | MS.gene031984:intron | 50.0% | |
| ! | AAAAAGTGCGCGGAAACACC+AGG | + | chr3.4:70121674-70121693 | MS.gene031984:CDS | 50.0% |
| ! | GTGTCTTTTCAGAGAGGCTC+TGG | - | chr3.4:70121618-70121637 | None:intergenic | 50.0% |
| ! | GTTTTCCCACCAGAAGGAGT+TGG | - | chr3.4:70122165-70122184 | None:intergenic | 50.0% |
| !! | CGAGTGGACTTTTCACAGAG+AGG | + | chr3.4:70122668-70122687 | MS.gene031984:CDS | 50.0% |
| ACCAGATGAGTGAGGACCCA+TGG | - | chr3.4:70120889-70120908 | None:intergenic | 55.0% | |
| ATTGGAAGCCATGCCTCCAC+TGG | + | chr3.4:70122565-70122584 | MS.gene031984:CDS | 55.0% | |
| GGTCCTCACTCATCTGGTCT+AGG | + | chr3.4:70120891-70120910 | MS.gene031984:CDS | 55.0% | |
| TCCATGGGTCCTCACTCATC+TGG | + | chr3.4:70120885-70120904 | MS.gene031984:CDS | 55.0% | |
| TGCTCCCCTCAGCTGCTAAA+TGG | - | chr3.4:70122503-70122522 | None:intergenic | 55.0% | |
| GGGCCTAGACCAGATGAGTG+AGG | - | chr3.4:70120897-70120916 | None:intergenic | 60.0% | |
| TGGAGTGGGGATCGAACCCT+CGG | - | chr3.4:70119567-70119586 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 70118790 | 70122704 | 70118790 | ID=MS.gene031984 |
| chr3.4 | mRNA | 70118790 | 70122704 | 70118790 | ID=MS.gene031984.t1;Parent=MS.gene031984 |
| chr3.4 | exon | 70118790 | 70118900 | 70118790 | ID=MS.gene031984.t1.exon1;Parent=MS.gene031984.t1 |
| chr3.4 | CDS | 70118790 | 70118900 | 70118790 | ID=cds.MS.gene031984.t1;Parent=MS.gene031984.t1 |
| chr3.4 | exon | 70119983 | 70120060 | 70119983 | ID=MS.gene031984.t1.exon2;Parent=MS.gene031984.t1 |
| chr3.4 | CDS | 70119983 | 70120060 | 70119983 | ID=cds.MS.gene031984.t1;Parent=MS.gene031984.t1 |
| chr3.4 | exon | 70120834 | 70120974 | 70120834 | ID=MS.gene031984.t1.exon3;Parent=MS.gene031984.t1 |
| chr3.4 | CDS | 70120834 | 70120974 | 70120834 | ID=cds.MS.gene031984.t1;Parent=MS.gene031984.t1 |
| chr3.4 | exon | 70121619 | 70121695 | 70121619 | ID=MS.gene031984.t1.exon4;Parent=MS.gene031984.t1 |
| chr3.4 | CDS | 70121619 | 70121695 | 70121619 | ID=cds.MS.gene031984.t1;Parent=MS.gene031984.t1 |
| chr3.4 | exon | 70121801 | 70121950 | 70121801 | ID=MS.gene031984.t1.exon5;Parent=MS.gene031984.t1 |
| chr3.4 | CDS | 70121801 | 70121950 | 70121801 | ID=cds.MS.gene031984.t1;Parent=MS.gene031984.t1 |
| chr3.4 | exon | 70122491 | 70122704 | 70122491 | ID=MS.gene031984.t1.exon6;Parent=MS.gene031984.t1 |
| chr3.4 | CDS | 70122491 | 70122704 | 70122491 | ID=cds.MS.gene031984.t1;Parent=MS.gene031984.t1 |
| Gene Sequence |
| Protein sequence |
