Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48374.t1 | KEH31840.1 | 92.3 | 274 | 19 | 1 | 1 | 272 | 1 | 274 | 3.50E-145 | 524.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48374.t1 | Q9FM04 | 67.1 | 207 | 68 | 0 | 59 | 265 | 33 | 239 | 1.2e-82 | 307.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48374.t1 | A0A072V154 | 92.3 | 274 | 19 | 1 | 1 | 272 | 1 | 274 | 2.5e-145 | 524.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene01669 | MS.gene48374 | PPI |
| MS.gene01526 | MS.gene48374 | PPI |
| MS.gene01668 | MS.gene48374 | PPI |
| MS.gene071404 | MS.gene48374 | PPI |
| MS.gene01523 | MS.gene48374 | PPI |
| MS.gene031984 | MS.gene48374 | PPI |
| MS.gene008064 | MS.gene48374 | PPI |
| MS.gene004220 | MS.gene48374 | PPI |
| MS.gene48374 | MS.gene69231 | PPI |
| MS.gene057336 | MS.gene48374 | PPI |
| MS.gene004221 | MS.gene48374 | PPI |
| MS.gene002546 | MS.gene48374 | PPI |
| MS.gene48374 | MS.gene004219 | PPI |
| MS.gene071405 | MS.gene48374 | PPI |
| MS.gene01667 | MS.gene48374 | PPI |
| MS.gene002547 | MS.gene48374 | PPI |
| MS.gene071406 | MS.gene48374 | PPI |
| MS.gene002548 | MS.gene48374 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48374.t1 | MTR_4g105680 | 92.336 | 274 | 19 | 1 | 1 | 272 | 1 | 274 | 0.0 | 503 |
| MS.gene48374.t1 | MTR_2g015500 | 46.512 | 215 | 105 | 3 | 56 | 263 | 31 | 242 | 8.16e-62 | 195 |
| MS.gene48374.t1 | MTR_2g015510 | 47.115 | 208 | 103 | 2 | 60 | 263 | 37 | 241 | 5.21e-61 | 193 |
| MS.gene48374.t1 | MTR_7g068530 | 34.884 | 215 | 129 | 2 | 49 | 259 | 27 | 234 | 1.73e-42 | 146 |
| MS.gene48374.t1 | MTR_3g070460 | 35.484 | 217 | 126 | 4 | 45 | 255 | 24 | 232 | 1.16e-41 | 144 |
| MS.gene48374.t1 | MTR_4g016510 | 34.328 | 201 | 123 | 2 | 59 | 255 | 37 | 232 | 3.48e-38 | 135 |
| MS.gene48374.t1 | MTR_7g068550 | 35.979 | 189 | 114 | 1 | 49 | 237 | 27 | 208 | 2.23e-37 | 132 |
| MS.gene48374.t1 | MTR_7g068460 | 32.338 | 201 | 126 | 3 | 59 | 255 | 63 | 257 | 6.42e-35 | 127 |
| MS.gene48374.t1 | MTR_7g068500 | 33.333 | 201 | 124 | 3 | 59 | 255 | 62 | 256 | 2.61e-34 | 125 |
| MS.gene48374.t1 | MTR_2g015480 | 40.099 | 202 | 97 | 5 | 60 | 255 | 89 | 272 | 1.87e-33 | 124 |
| MS.gene48374.t1 | MTR_7g068470 | 33.333 | 201 | 124 | 3 | 59 | 255 | 32 | 226 | 3.94e-32 | 119 |
| MS.gene48374.t1 | MTR_7g068450 | 31.731 | 208 | 129 | 4 | 59 | 259 | 33 | 234 | 8.10e-30 | 113 |
| MS.gene48374.t1 | MTR_7g068470 | 32.338 | 201 | 122 | 4 | 59 | 255 | 32 | 222 | 1.88e-29 | 112 |
| MS.gene48374.t1 | MTR_4g016500 | 31.410 | 156 | 72 | 2 | 60 | 215 | 280 | 400 | 1.08e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48374.t1 | AT5G62930 | 67.150 | 207 | 68 | 0 | 59 | 265 | 33 | 239 | 5.38e-105 | 305 |
| MS.gene48374.t1 | AT5G62930 | 67.150 | 207 | 68 | 0 | 59 | 265 | 59 | 265 | 2.18e-104 | 304 |
| MS.gene48374.t1 | AT5G62930 | 65.363 | 179 | 62 | 0 | 87 | 265 | 3 | 181 | 7.97e-86 | 254 |
| MS.gene48374.t1 | AT5G45920 | 46.364 | 220 | 112 | 2 | 49 | 265 | 24 | 240 | 1.12e-63 | 200 |
| MS.gene48374.t1 | AT5G45920 | 46.364 | 220 | 112 | 2 | 49 | 265 | 24 | 240 | 1.12e-63 | 200 |
| MS.gene48374.t1 | AT5G45920 | 48.447 | 161 | 77 | 2 | 56 | 213 | 31 | 188 | 3.20e-46 | 154 |
| MS.gene48374.t1 | AT5G45920 | 48.447 | 161 | 77 | 2 | 56 | 213 | 31 | 188 | 3.20e-46 | 154 |
| MS.gene48374.t1 | AT3G11210 | 32.864 | 213 | 130 | 3 | 49 | 255 | 27 | 232 | 3.17e-36 | 130 |
| MS.gene48374.t1 | AT2G38180 | 31.658 | 199 | 124 | 4 | 56 | 249 | 33 | 224 | 9.89e-32 | 119 |
Find 57 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCACTATTATTGAGAAAA+AGG | 0.232037 | 8.3:+17187845 | MS.gene48374:CDS |
| GCCTTCTGTTTCTTGCATCT+TGG | 0.256222 | 8.3:-17189710 | None:intergenic |
| AGAGGTGGTTTAGTTGATTC+TGG | 0.261179 | 8.3:-17188207 | None:intergenic |
| GAACAATCATTCCGAGTAAA+TGG | 0.276197 | 8.3:+17187956 | MS.gene48374:CDS |
| TCTAGCATTATTACCATATA+AGG | 0.293325 | 8.3:-17189590 | None:intergenic |
| GTATCTTGCAGATCCTTATA+TGG | 0.309244 | 8.3:+17189577 | MS.gene48374:intron |
| GAAAGAACAAATGAAGTTAC+TGG | 0.362730 | 8.3:+17189622 | MS.gene48374:CDS |
| AGAGAAAACATAGTGTTGTT+TGG | 0.363634 | 8.3:+17187920 | MS.gene48374:CDS |
| TTGTGTTTGTATTCTTGAAT+AGG | 0.367340 | 8.3:-17188300 | None:intergenic |
| TTGCCTTTCACTAGTTCTTC+CGG | 0.373061 | 8.3:-17188271 | None:intergenic |
| CGACGTCCTTCTTCACAAAC+TGG | 0.377567 | 8.3:-17189003 | None:intergenic |
| CATCATCGCTCTCGCTCGTT+GGG | 0.412869 | 8.3:-17187897 | None:intergenic |
| TCATCATCGCTCTCGCTCGT+TGG | 0.414045 | 8.3:-17187898 | None:intergenic |
| GAAGCTTAACTTGCGAGAAT+AGG | 0.419542 | 8.3:-17188002 | None:intergenic |
| ATCATTCCGAGTAAATGGTT+GGG | 0.430424 | 8.3:+17187961 | MS.gene48374:CDS |
| AAGACTACTGCGTTTCCATC+TGG | 0.436142 | 8.3:-17190439 | None:intergenic |
| AGAGGAGCGCATCCCTCGTT+GGG | 0.442649 | 8.3:-17187868 | None:intergenic |
| ATTCTGGAGGGAAGAGATGA+TGG | 0.446898 | 8.3:-17188191 | None:intergenic |
| GAGTGGTGAGGGAAATCATA+TGG | 0.447386 | 8.3:-17190514 | None:intergenic |
| CTGCGTTTCCATCTGGTGTC+AGG | 0.458666 | 8.3:-17190432 | None:intergenic |
| GATATACTTGTTCGTGGCTA+TGG | 0.466209 | 8.3:+17188135 | MS.gene48374:CDS |
| GCTAACGATGCTGCTTTGTC+CGG | 0.479496 | 8.3:+17188252 | MS.gene48374:CDS |
| GTTGTTTGGAGATTCATTAA+CGG | 0.482154 | 8.3:+17187934 | MS.gene48374:CDS |
| ATCAAGGTGTTCAACGAGGC+AGG | 0.488783 | 8.3:+17190472 | MS.gene48374:CDS |
| TGTTGAGATAGCTAAGGAAA+TGG | 0.489215 | 8.3:+17189663 | MS.gene48374:CDS |
| CAGGCTGATATACTTGTTCG+TGG | 0.490934 | 8.3:+17188129 | MS.gene48374:intron |
| AGGCATCACAAACATTCTGC+TGG | 0.500656 | 8.3:-17190570 | None:intergenic |
| CCACCTCCAGTTTGTGAAGA+AGG | 0.511510 | 8.3:+17188997 | MS.gene48374:CDS |
| TAAAGAATAGAACCTTTAAG+TGG | 0.523281 | 8.3:-17188341 | None:intergenic |
| CAGAGGAGCGCATCCCTCGT+TGG | 0.524318 | 8.3:-17187869 | None:intergenic |
| ATAAGCACGATGAGCATAGT+TGG | 0.530869 | 8.3:-17188970 | None:intergenic |
| CCTTCTTCACAAACTGGAGG+TGG | 0.540116 | 8.3:-17188997 | None:intergenic |
| GTTGAGATAGCTAAGGAAAT+GGG | 0.555304 | 8.3:+17189664 | MS.gene48374:CDS |
| AATCATTCCGAGTAAATGGT+TGG | 0.555781 | 8.3:+17187960 | MS.gene48374:CDS |
| GTGGTTTAGTTGATTCTGGA+GGG | 0.558691 | 8.3:-17188203 | None:intergenic |
| TTCTGCTGGAAAGAGCTCCC+AGG | 0.559689 | 8.3:-17190556 | None:intergenic |
| AGTCTTTCAAGAAGTGATCA+AGG | 0.560324 | 8.3:+17190456 | MS.gene48374:CDS |
| AAGAAAATTGCTGTAGCAAG+AGG | 0.561552 | 8.3:-17188225 | None:intergenic |
| TCATTCCGAGTAAATGGTTG+GGG | 0.564943 | 8.3:+17187962 | MS.gene48374:CDS |
| TCGCTCGTTGGGCAGATCAG+AGG | 0.567852 | 8.3:-17187886 | None:intergenic |
| GGGTTGCACCTGACACCAGA+TGG | 0.569557 | 8.3:+17190424 | MS.gene48374:CDS |
| AGATGCAAGAAACAGAAGGC+TGG | 0.577094 | 8.3:+17189713 | MS.gene48374:CDS |
| AAAATTGCTGTAGCAAGAGG+TGG | 0.588674 | 8.3:-17188222 | None:intergenic |
| ACCAGAACCCTACTATAATG+AGG | 0.589599 | 8.3:-17190590 | None:intergenic |
| GGTGGTTTAGTTGATTCTGG+AGG | 0.593185 | 8.3:-17188204 | None:intergenic |
| TAACTTGCGAGAATAGGCAT+TGG | 0.600633 | 8.3:-17187996 | None:intergenic |
| GATAGCTAAGGAAATGGGTG+TGG | 0.608314 | 8.3:+17189669 | MS.gene48374:CDS |
| TGGTGGATACAACACTCGAT+GGG | 0.613654 | 8.3:+17188155 | MS.gene48374:CDS |
| ATGGTGGATACAACACTCGA+TGG | 0.617751 | 8.3:+17188154 | MS.gene48374:CDS |
| AAGCACCCCAACCATTTACT+CGG | 0.624321 | 8.3:-17187967 | None:intergenic |
| TGTCCGGAAGAACTAGTGAA+AGG | 0.637479 | 8.3:+17188268 | MS.gene48374:CDS |
| ATACTTGTTCGTGGCTATGG+TGG | 0.639114 | 8.3:+17188138 | MS.gene48374:CDS |
| TCCAAGATGCAAGAAACAGA+AGG | 0.645640 | 8.3:+17189709 | MS.gene48374:CDS |
| CGCATGTGTTGAGATAGCTA+AGG | 0.654605 | 8.3:+17189657 | MS.gene48374:CDS |
| GTGTGGCTTATATCAATCTG+TGG | 0.661903 | 8.3:+17189686 | MS.gene48374:CDS |
| CGTCCTTCTTCACAAACTGG+AGG | 0.663317 | 8.3:-17189000 | None:intergenic |
| AGTGATCAAGGTGTTCAACG+AGG | 0.734747 | 8.3:+17190468 | MS.gene48374:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTTGTGATTATGAAT+TGG | + | chr8.3:17190083-17190102 | MS.gene48374:intron | 15.0% |
| !! | AACATGAAACTAATATAAAA+TGG | - | chr8.3:17189542-17189561 | None:intergenic | 15.0% |
| !! | TGATACTATTATATATAGTA+TGG | + | chr8.3:17190122-17190141 | MS.gene48374:intron | 15.0% |
| !! | TTTATCACTACAATAAATAA+TGG | + | chr8.3:17188390-17188409 | MS.gene48374:intron | 15.0% |
| !!! | TATTTTGTGATATGTTAATT+AGG | + | chr8.3:17189992-17190011 | MS.gene48374:intron | 15.0% |
| !! | AAAGTTTAAATGCAAAACAT+AGG | - | chr8.3:17188373-17188392 | None:intergenic | 20.0% |
| !! | AACTAATATTCTCTATTTCA+TGG | - | chr8.3:17189507-17189526 | None:intergenic | 20.0% |
| !! | ACTACAATAAATAATGGTTT+GGG | + | chr8.3:17188396-17188415 | MS.gene48374:intron | 20.0% |
| !! | ATGATCCAAAATATTATCAT+TGG | - | chr8.3:17188555-17188574 | None:intergenic | 20.0% |
| !! | TCAATAAGTGATAACATAAT+TGG | - | chr8.3:17188917-17188936 | None:intergenic | 20.0% |
| !! | TCACACGAAAATAAATAAAA+TGG | - | chr8.3:17188066-17188085 | None:intergenic | 20.0% |
| !! | TTGTATTATCTAATCTTAGT+TGG | + | chr8.3:17188719-17188738 | MS.gene48374:intron | 20.0% |
| !! | TTTCACTATTATTGAGAAAA+AGG | + | chr8.3:17187845-17187864 | MS.gene48374:CDS | 20.0% |
| !!! | AATGATAATATTTTGGATCA+TGG | + | chr8.3:17188554-17188573 | MS.gene48374:intron | 20.0% |
| !!! | AATTGGCATTTAAAGTATAA+GGG | - | chr8.3:17188900-17188919 | None:intergenic | 20.0% |
| !!! | ATATTTTAGATGTATGTGAA+CGG | - | chr8.3:17189292-17189311 | None:intergenic | 20.0% |
| !!! | CTTATCCAATGATAATATTT+TGG | + | chr8.3:17188547-17188566 | MS.gene48374:intron | 20.0% |
| !!! | TAATTGGCATTTAAAGTATA+AGG | - | chr8.3:17188901-17188920 | None:intergenic | 20.0% |
| !!! | TTGATTTAACTTCAATTTTC+AGG | + | chr8.3:17188110-17188129 | MS.gene48374:intron | 20.0% |
| ! | ATAATTTACTTTCCTAGACT+AGG | + | chr8.3:17190034-17190053 | MS.gene48374:intron | 25.0% |
| ! | ATATAAGGATTCAAGATATC+AGG | + | chr8.3:17188584-17188603 | MS.gene48374:intron | 25.0% |
| ! | CACTACAATAAATAATGGTT+TGG | + | chr8.3:17188395-17188414 | MS.gene48374:intron | 25.0% |
| ! | TAAAGAATAGAACCTTTAAG+TGG | - | chr8.3:17188344-17188363 | None:intergenic | 25.0% |
| ! | TCTAGCATTATTACCATATA+AGG | - | chr8.3:17189593-17189612 | None:intergenic | 25.0% |
| ! | TTGTGTTTGTATTCTTGAAT+AGG | - | chr8.3:17188303-17188322 | None:intergenic | 25.0% |
| !! | AAAATTGATGACAAAAATCC+TGG | + | chr8.3:17190538-17190557 | MS.gene48374:CDS | 25.0% |
| !! | AAATTGATGACAAAAATCCT+GGG | + | chr8.3:17190539-17190558 | MS.gene48374:CDS | 25.0% |
| !! | ACTGTCTTTAAATTTTGCAT+TGG | + | chr8.3:17190300-17190319 | MS.gene48374:intron | 25.0% |
| !! | TACATCTAAAATATCTGACA+TGG | + | chr8.3:17189298-17189317 | MS.gene48374:intron | 25.0% |
| !! | TCTTGAATCCTTATATTTTC+AGG | - | chr8.3:17188580-17188599 | None:intergenic | 25.0% |
| !!! | ATTGTTGTTTTGCATTTACA+GGG | + | chr8.3:17190399-17190418 | MS.gene48374:intron | 25.0% |
| !!! | TATTGTTGTTTTGCATTTAC+AGG | + | chr8.3:17190398-17190417 | MS.gene48374:intron | 25.0% |
| !!! | TTTTGTCATCAATTTTTGAG+TGG | - | chr8.3:17190534-17190553 | None:intergenic | 25.0% |
| AAATGGTGGTTCAGAAAATA+TGG | - | chr8.3:17189256-17189275 | None:intergenic | 30.0% | |
| AACATGACACAGTTTAAAGA+AGG | - | chr8.3:17189424-17189443 | None:intergenic | 30.0% | |
| ACGGAAGATAAATAGTCAAA+TGG | - | chr8.3:17189273-17189292 | None:intergenic | 30.0% | |
| AGAAAATATGGATGCAATAG+TGG | - | chr8.3:17189244-17189263 | None:intergenic | 30.0% | |
| AGCTTCTAGTAAAAAAAGTG+TGG | + | chr8.3:17189374-17189393 | MS.gene48374:intron | 30.0% | |
| CTTTAATCAACAAGAAAAGG+TGG | - | chr8.3:17189802-17189821 | None:intergenic | 30.0% | |
| GAAAGAACAAATGAAGTTAC+TGG | + | chr8.3:17189622-17189641 | MS.gene48374:CDS | 30.0% | |
| GAAGATAAATAGTCAAATGG+TGG | - | chr8.3:17189270-17189289 | None:intergenic | 30.0% | |
| GTAACAAGATAGAAACTCAT+CGG | - | chr8.3:17188757-17188776 | None:intergenic | 30.0% | |
| GTTGTTTGGAGATTCATTAA+CGG | + | chr8.3:17187934-17187953 | MS.gene48374:CDS | 30.0% | |
| TTATTTATCTCACCTAGTCT+AGG | - | chr8.3:17190049-17190068 | None:intergenic | 30.0% | |
| TTGACAAACATATGTGACAT+AGG | + | chr8.3:17189771-17189790 | MS.gene48374:intron | 30.0% | |
| ! | AAGCACAATTTTGTTAGTAC+AGG | - | chr8.3:17188864-17188883 | None:intergenic | 30.0% |
| ! | AGAGAAAACATAGTGTTGTT+TGG | + | chr8.3:17187920-17187939 | MS.gene48374:CDS | 30.0% |
| ! | CAATATTGATAACCCTTAAC+TGG | - | chr8.3:17190383-17190402 | None:intergenic | 30.0% |
| ! | GATTTAACTTTGACTACATC+TGG | + | chr8.3:17189837-17189856 | MS.gene48374:intron | 30.0% |
| ! | GGAACATTTCTTTTACAATG+TGG | + | chr8.3:17188498-17188517 | MS.gene48374:intron | 30.0% |
| ! | TCTTGTTGATTAAAGCCAAA+AGG | + | chr8.3:17189807-17189826 | MS.gene48374:intron | 30.0% |
| ! | TTATACCATGTCAGGAATTT+TGG | - | chr8.3:17190172-17190191 | None:intergenic | 30.0% |
| !! | TGGCTTTAATCAACAAGAAA+AGG | - | chr8.3:17189805-17189824 | None:intergenic | 30.0% |
| !! | TTTTGTGGTTAGTTATAACC+TGG | + | chr8.3:17189746-17189765 | MS.gene48374:intron | 30.0% |
| !!! | AAGGTAGTTTTAACCAAACT+AGG | - | chr8.3:17189405-17189424 | None:intergenic | 30.0% |
| !!! | ATTTTTTCCAAATCGTGTCA+TGG | - | chr8.3:17188438-17188457 | None:intergenic | 30.0% |
| !!! | GAATTTGCTGGTTGTTTTAT+GGG | + | chr8.3:17189465-17189484 | MS.gene48374:intron | 30.0% |
| !!! | TGAATTTGCTGGTTGTTTTA+TGG | + | chr8.3:17189464-17189483 | MS.gene48374:intron | 30.0% |
| AAAAATACAGCACACTGTGA+GGG | - | chr8.3:17189345-17189364 | None:intergenic | 35.0% | |
| AAAAATGGTGCTCCACTTAA+AGG | + | chr8.3:17188329-17188348 | MS.gene48374:CDS | 35.0% | |
| AAGAAAATTGCTGTAGCAAG+AGG | - | chr8.3:17188228-17188247 | None:intergenic | 35.0% | |
| AATCATTCCGAGTAAATGGT+TGG | + | chr8.3:17187960-17187979 | MS.gene48374:CDS | 35.0% | |
| AGGATTCAAGATATCAGGAT+TGG | + | chr8.3:17188589-17188608 | MS.gene48374:intron | 35.0% | |
| AGTCTTTCAAGAAGTGATCA+AGG | + | chr8.3:17190456-17190475 | MS.gene48374:CDS | 35.0% | |
| ATCATTCCGAGTAAATGGTT+GGG | + | chr8.3:17187961-17187980 | MS.gene48374:CDS | 35.0% | |
| ATCGAAATTAGCGCTTGATT+TGG | + | chr8.3:17188477-17188496 | MS.gene48374:intron | 35.0% | |
| CAAACACAACCTCCAAAAAA+TGG | + | chr8.3:17188314-17188333 | MS.gene48374:CDS | 35.0% | |
| GAACAATCATTCCGAGTAAA+TGG | + | chr8.3:17187956-17187975 | MS.gene48374:CDS | 35.0% | |
| GATAGCAAGAACAGTTTCAT+TGG | - | chr8.3:17189159-17189178 | None:intergenic | 35.0% | |
| GATCATGGCCTGAAAATATA+AGG | + | chr8.3:17188569-17188588 | MS.gene48374:intron | 35.0% | |
| GGCTATTTACGACATCTTAT+TGG | + | chr8.3:17189127-17189146 | MS.gene48374:intron | 35.0% | |
| GTATCTTGCAGATCCTTATA+TGG | + | chr8.3:17189577-17189596 | MS.gene48374:intron | 35.0% | |
| GTATGGAATGCAATAGAGAA+AGG | + | chr8.3:17190139-17190158 | MS.gene48374:intron | 35.0% | |
| GTGATCCTGTTATTAGTCAA+GGG | + | chr8.3:17189867-17189886 | MS.gene48374:intron | 35.0% | |
| GTTGAGATAGCTAAGGAAAT+GGG | + | chr8.3:17189664-17189683 | MS.gene48374:CDS | 35.0% | |
| TACACTGCTTATGAATTTGC+TGG | + | chr8.3:17189453-17189472 | MS.gene48374:intron | 35.0% | |
| TAGCCAAGTAGATAATAGTG+CGG | - | chr8.3:17189112-17189131 | None:intergenic | 35.0% | |
| TGTGATCCTGTTATTAGTCA+AGG | + | chr8.3:17189866-17189885 | MS.gene48374:intron | 35.0% | |
| TGTTGAGATAGCTAAGGAAA+TGG | + | chr8.3:17189663-17189682 | MS.gene48374:CDS | 35.0% | |
| ! | AAGTGTGGTTTTTCCTAGTT+TGG | + | chr8.3:17189389-17189408 | MS.gene48374:intron | 35.0% |
| ! | AGTGGTTCTGCTAATAACAA+TGG | - | chr8.3:17189226-17189245 | None:intergenic | 35.0% |
| ! | CTTGCTACAGCAATTTTCTT+CGG | + | chr8.3:17188228-17188247 | MS.gene48374:CDS | 35.0% |
| ! | CTTGTTACTTGTGCTTTCAA+AGG | + | chr8.3:17188769-17188788 | MS.gene48374:intron | 35.0% |
| ! | GCTGGCAAAAGAAATTTTTG+TGG | + | chr8.3:17189731-17189750 | MS.gene48374:CDS | 35.0% |
| ! | GTTAAATCCATGATGCCTTT+TGG | - | chr8.3:17189825-17189844 | None:intergenic | 35.0% |
| ! | TATTGATAACCCTTAACTGG+AGG | - | chr8.3:17190380-17190399 | None:intergenic | 35.0% |
| ! | TGTTTTGCATTTACAGGGAT+GGG | + | chr8.3:17190404-17190423 | MS.gene48374:intron | 35.0% |
| !! | ATTAAAGCCAAAAGGCATCA+TGG | + | chr8.3:17189815-17189834 | MS.gene48374:intron | 35.0% |
| !! | TTGTTTTGCATTTACAGGGA+TGG | + | chr8.3:17190403-17190422 | MS.gene48374:intron | 35.0% |
| !!! | CATCAATTTTTGAGTGGTGA+GGG | - | chr8.3:17190528-17190547 | None:intergenic | 35.0% |
| !!! | TCATCAATTTTTGAGTGGTG+AGG | - | chr8.3:17190529-17190548 | None:intergenic | 35.0% |
| !!! | TTAAGTGGAGCACCATTTTT+TGG | - | chr8.3:17188329-17188348 | None:intergenic | 35.0% |
| AAAATTGCTGTAGCAAGAGG+TGG | - | chr8.3:17188225-17188244 | None:intergenic | 40.0% | |
| ATAAGCACGATGAGCATAGT+TGG | - | chr8.3:17188973-17188992 | None:intergenic | 40.0% | |
| ATGCTAGATTCCTCCAGTTA+AGG | + | chr8.3:17190367-17190386 | MS.gene48374:intron | 40.0% | |
| CAAAAATACAGCACACTGTG+AGG | - | chr8.3:17189346-17189365 | None:intergenic | 40.0% | |
| CACATATGTTTGTCAAGTCC+AGG | - | chr8.3:17189767-17189786 | None:intergenic | 40.0% | |
| GAATGCCCTTGACTAATAAC+AGG | - | chr8.3:17189875-17189894 | None:intergenic | 40.0% | |
| GATATACTTGTTCGTGGCTA+TGG | + | chr8.3:17188135-17188154 | MS.gene48374:CDS | 40.0% | |
| GATCTAATCTGATCTGAGAG+TGG | - | chr8.3:17188044-17188063 | None:intergenic | 40.0% | |
| GGCTCAAGGTATAACAAAAG+AGG | - | chr8.3:17189324-17189343 | None:intergenic | 40.0% | |
| GGTTCTGCTAATAACAATGG+TGG | - | chr8.3:17189223-17189242 | None:intergenic | 40.0% | |
| GTGTGGCTTATATCAATCTG+TGG | + | chr8.3:17189686-17189705 | MS.gene48374:CDS | 40.0% | |
| TATGGCTCTTATACCATGTC+AGG | - | chr8.3:17190180-17190199 | None:intergenic | 40.0% | |
| TCAAGCCAAAATTCCTGACA+TGG | + | chr8.3:17190164-17190183 | MS.gene48374:intron | 40.0% | |
| TCATTCCGAGTAAATGGTTG+GGG | + | chr8.3:17187962-17187981 | MS.gene48374:CDS | 40.0% | |
| TCCAAGATGCAAGAAACAGA+AGG | + | chr8.3:17189709-17189728 | MS.gene48374:CDS | 40.0% | |
| TGCTAGATTCCTCCAGTTAA+GGG | + | chr8.3:17190368-17190387 | MS.gene48374:intron | 40.0% | |
| TGTGGTGACACTAGTCATTA+TGG | + | chr8.3:17188516-17188535 | MS.gene48374:intron | 40.0% | |
| TGTTACTCCATGACACGATT+TGG | + | chr8.3:17188428-17188447 | MS.gene48374:intron | 40.0% | |
| TGTTGGAATTCAAGTGTGAG+TGG | + | chr8.3:17190263-17190282 | MS.gene48374:intron | 40.0% | |
| TTGCCGCACTATTATCTACT+TGG | + | chr8.3:17189106-17189125 | MS.gene48374:intron | 40.0% | |
| ! | AGAGGTGGTTTAGTTGATTC+TGG | - | chr8.3:17188210-17188229 | None:intergenic | 40.0% |
| ! | GTGGTTTAGTTGATTCTGGA+GGG | - | chr8.3:17188206-17188225 | None:intergenic | 40.0% |
| ! | TAACTTGCGAGAATAGGCAT+TGG | - | chr8.3:17187999-17188018 | None:intergenic | 40.0% |
| ! | TCTATGTTGAGTGCTGCATT+CGG | + | chr8.3:17188823-17188842 | MS.gene48374:intron | 40.0% |
| ! | TTGCCTTTCACTAGTTCTTC+CGG | - | chr8.3:17188274-17188293 | None:intergenic | 40.0% |
| !! | GAAGCTTAACTTGCGAGAAT+AGG | - | chr8.3:17188005-17188024 | None:intergenic | 40.0% |
| AAGACTACTGCGTTTCCATC+TGG | - | chr8.3:17190442-17190461 | None:intergenic | 45.0% | |
| AAGCACCCCAACCATTTACT+CGG | - | chr8.3:17187970-17187989 | None:intergenic | 45.0% | |
| AGATGCAAGAAACAGAAGGC+TGG | + | chr8.3:17189713-17189732 | MS.gene48374:CDS | 45.0% | |
| AGGCATCACAAACATTCTGC+TGG | - | chr8.3:17190573-17190592 | None:intergenic | 45.0% | |
| ATACTTGTTCGTGGCTATGG+TGG | + | chr8.3:17188138-17188157 | MS.gene48374:CDS | 45.0% | |
| ATTGAGAAAAAGGCCCAACG+AGG | + | chr8.3:17187855-17187874 | MS.gene48374:CDS | 45.0% | |
| CAGGCTGATATACTTGTTCG+TGG | + | chr8.3:17188129-17188148 | MS.gene48374:intron | 45.0% | |
| CGCATGTGTTGAGATAGCTA+AGG | + | chr8.3:17189657-17189676 | MS.gene48374:CDS | 45.0% | |
| GAGTGGTGAGGGAAATCATA+TGG | - | chr8.3:17190517-17190536 | None:intergenic | 45.0% | |
| GATAGCTAAGGAAATGGGTG+TGG | + | chr8.3:17189669-17189688 | MS.gene48374:CDS | 45.0% | |
| GATGAACTCGACAAGAGAGA+AGG | - | chr8.3:17189053-17189072 | None:intergenic | 45.0% | |
| TGTCCGGAAGAACTAGTGAA+AGG | + | chr8.3:17188268-17188287 | MS.gene48374:CDS | 45.0% | |
| TTGAGAAAAAGGCCCAACGA+GGG | + | chr8.3:17187856-17187875 | MS.gene48374:CDS | 45.0% | |
| ! | AGTGATCAAGGTGTTCAACG+AGG | + | chr8.3:17190468-17190487 | MS.gene48374:CDS | 45.0% |
| ! | ATTCTGGAGGGAAGAGATGA+TGG | - | chr8.3:17188194-17188213 | None:intergenic | 45.0% |
| ! | GCCTTCTGTTTCTTGCATCT+TGG | - | chr8.3:17189713-17189732 | None:intergenic | 45.0% |
| ! | GGTGGTTTAGTTGATTCTGG+AGG | - | chr8.3:17188207-17188226 | None:intergenic | 45.0% |
| ! | TGGTGGATACAACACTCGAT+GGG | + | chr8.3:17188155-17188174 | MS.gene48374:CDS | 45.0% |
| ! | TTGAGTGCTGCATTCGGTTA+AGG | + | chr8.3:17188829-17188848 | MS.gene48374:intron | 45.0% |
| !! | ATGGTGGATACAACACTCGA+TGG | + | chr8.3:17188154-17188173 | MS.gene48374:CDS | 45.0% |
| !!! | AGTGGAGCACCATTTTTTGG+AGG | - | chr8.3:17188326-17188345 | None:intergenic | 45.0% |
| AGAGCCATAGTTCAGCTCAG+TGG | + | chr8.3:17190191-17190210 | MS.gene48374:intron | 50.0% | |
| AGCCATAGTTCAGCTCAGTG+GGG | + | chr8.3:17190193-17190212 | MS.gene48374:intron | 50.0% | |
| AGTGGGATCTAGTGTGGATC+AGG | + | chr8.3:17190223-17190242 | MS.gene48374:intron | 50.0% | |
| CCACCTCCAGTTTGTGAAGA+AGG | + | chr8.3:17188997-17189016 | MS.gene48374:CDS | 50.0% | |
| CCTTCTTCACAAACTGGAGG+TGG | - | chr8.3:17189000-17189019 | None:intergenic | 50.0% | |
| CGACGTCCTTCTTCACAAAC+TGG | - | chr8.3:17189006-17189025 | None:intergenic | 50.0% | |
| CGTCCTTCTTCACAAACTGG+AGG | - | chr8.3:17189003-17189022 | None:intergenic | 50.0% | |
| CTAGTGATGTGGGTGACTGT+TGG | + | chr8.3:17190246-17190265 | MS.gene48374:intron | 50.0% | |
| GAGCCATAGTTCAGCTCAGT+GGG | + | chr8.3:17190192-17190211 | MS.gene48374:intron | 50.0% | |
| GTGGATCAGGCTAGTGATGT+GGG | + | chr8.3:17190236-17190255 | MS.gene48374:intron | 50.0% | |
| TACCCCACTGAGCTGAACTA+TGG | - | chr8.3:17190198-17190217 | None:intergenic | 50.0% | |
| TGTGGATCAGGCTAGTGATG+TGG | + | chr8.3:17190235-17190254 | MS.gene48374:intron | 50.0% | |
| ! | ATCAAGGTGTTCAACGAGGC+AGG | + | chr8.3:17190472-17190491 | MS.gene48374:CDS | 50.0% |
| !! | GCTAACGATGCTGCTTTGTC+CGG | + | chr8.3:17188252-17188271 | MS.gene48374:CDS | 50.0% |
| AGTTCAGCTCAGTGGGGTAG+CGG | + | chr8.3:17190199-17190218 | MS.gene48374:intron | 55.0% | |
| CATCATCGCTCTCGCTCGTT+GGG | - | chr8.3:17187900-17187919 | None:intergenic | 55.0% | |
| CTGCGTTTCCATCTGGTGTC+AGG | - | chr8.3:17190435-17190454 | None:intergenic | 55.0% | |
| TCATCATCGCTCTCGCTCGT+TGG | - | chr8.3:17187901-17187920 | None:intergenic | 55.0% | |
| TTCTGCTGGAAAGAGCTCCC+AGG | - | chr8.3:17190559-17190578 | None:intergenic | 55.0% | |
| AGCGGGAGTGGGATCTAGTG+TGG | + | chr8.3:17190217-17190236 | MS.gene48374:intron | 60.0% | |
| CAGCACACTGTGAGGGCTCA+AGG | - | chr8.3:17189338-17189357 | None:intergenic | 60.0% | |
| GGGTTGCACCTGACACCAGA+TGG | + | chr8.3:17190424-17190443 | MS.gene48374:CDS | 60.0% | |
| GTTCAGCTCAGTGGGGTAGC+GGG | + | chr8.3:17190200-17190219 | MS.gene48374:intron | 60.0% | |
| TCGCTCGTTGGGCAGATCAG+AGG | - | chr8.3:17187889-17187908 | None:intergenic | 60.0% | |
| ! | AGAGGAGCGCATCCCTCGTT+GGG | - | chr8.3:17187871-17187890 | None:intergenic | 60.0% |
| ! | CAGAGGAGCGCATCCCTCGT+TGG | - | chr8.3:17187872-17187891 | None:intergenic | 65.0% |
| !! | CTCAGTGGGGTAGCGGGAGT+GGG | + | chr8.3:17190206-17190225 | MS.gene48374:intron | 65.0% |
| !! | GCTCAGTGGGGTAGCGGGAG+TGG | + | chr8.3:17190205-17190224 | MS.gene48374:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 17187838 | 17190600 | 17187838 | ID=MS.gene48374 |
| chr8.3 | mRNA | 17187838 | 17190600 | 17187838 | ID=MS.gene48374.t1;Parent=MS.gene48374 |
| chr8.3 | exon | 17187838 | 17188014 | 17187838 | ID=MS.gene48374.t1.exon1;Parent=MS.gene48374.t1 |
| chr8.3 | CDS | 17187838 | 17188014 | 17187838 | ID=cds.MS.gene48374.t1;Parent=MS.gene48374.t1 |
| chr8.3 | exon | 17188132 | 17188350 | 17188132 | ID=MS.gene48374.t1.exon2;Parent=MS.gene48374.t1 |
| chr8.3 | CDS | 17188132 | 17188350 | 17188132 | ID=cds.MS.gene48374.t1;Parent=MS.gene48374.t1 |
| chr8.3 | exon | 17188961 | 17189037 | 17188961 | ID=MS.gene48374.t1.exon3;Parent=MS.gene48374.t1 |
| chr8.3 | CDS | 17188961 | 17189037 | 17188961 | ID=cds.MS.gene48374.t1;Parent=MS.gene48374.t1 |
| chr8.3 | exon | 17189588 | 17189752 | 17189588 | ID=MS.gene48374.t1.exon4;Parent=MS.gene48374.t1 |
| chr8.3 | CDS | 17189588 | 17189752 | 17189588 | ID=cds.MS.gene48374.t1;Parent=MS.gene48374.t1 |
| chr8.3 | exon | 17190420 | 17190600 | 17190420 | ID=MS.gene48374.t1.exon5;Parent=MS.gene48374.t1 |
| chr8.3 | CDS | 17190420 | 17190600 | 17190420 | ID=cds.MS.gene48374.t1;Parent=MS.gene48374.t1 |
| Gene Sequence |
| Protein sequence |
