Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69231.t1 | XP_003600886.1 | 99.6 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 2.70E-147 | 531.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69231.t1 | Q9SRM5 | 70.7 | 256 | 75 | 0 | 1 | 256 | 1 | 256 | 3.9e-110 | 399.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69231.t1 | G7JB85 | 99.6 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 1.9e-147 | 531.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene01667 | MS.gene69231 | PPI |
MS.gene48374 | MS.gene69231 | PPI |
MS.gene01526 | MS.gene69231 | PPI |
MS.gene002547 | MS.gene69231 | PPI |
MS.gene071406 | MS.gene69231 | PPI |
MS.gene002548 | MS.gene69231 | PPI |
MS.gene01669 | MS.gene69231 | PPI |
MS.gene004220 | MS.gene69231 | PPI |
MS.gene004219 | MS.gene69231 | PPI |
MS.gene56873 | MS.gene69231 | PPI |
MS.gene01668 | MS.gene69231 | PPI |
MS.gene071404 | MS.gene69231 | PPI |
MS.gene01523 | MS.gene69231 | PPI |
MS.gene071405 | MS.gene69231 | PPI |
MS.gene004221 | MS.gene69231 | PPI |
MS.gene002546 | MS.gene69231 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69231.t1 | MTR_3g070460 | 99.609 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 0.0 | 532 |
MS.gene69231.t1 | MTR_4g016510 | 66.406 | 256 | 86 | 0 | 1 | 256 | 1 | 256 | 6.02e-128 | 363 |
MS.gene69231.t1 | MTR_7g068530 | 62.109 | 256 | 94 | 2 | 1 | 256 | 1 | 253 | 1.81e-118 | 339 |
MS.gene69231.t1 | MTR_7g068460 | 61.660 | 253 | 95 | 2 | 3 | 255 | 30 | 280 | 4.99e-115 | 331 |
MS.gene69231.t1 | MTR_7g068500 | 60.079 | 253 | 99 | 2 | 3 | 255 | 29 | 279 | 8.83e-112 | 323 |
MS.gene69231.t1 | MTR_7g068550 | 57.812 | 256 | 106 | 1 | 1 | 256 | 1 | 254 | 2.12e-110 | 318 |
MS.gene69231.t1 | MTR_7g068470 | 60.000 | 250 | 97 | 3 | 6 | 255 | 2 | 248 | 1.38e-107 | 311 |
MS.gene69231.t1 | MTR_7g068470 | 58.800 | 250 | 96 | 4 | 6 | 255 | 2 | 244 | 3.91e-103 | 300 |
MS.gene69231.t1 | MTR_7g068450 | 52.549 | 255 | 116 | 3 | 6 | 256 | 2 | 255 | 4.58e-94 | 277 |
MS.gene69231.t1 | MTR_4g016500 | 39.640 | 222 | 63 | 3 | 35 | 256 | 277 | 427 | 1.46e-45 | 158 |
MS.gene69231.t1 | MTR_2g015500 | 36.449 | 214 | 124 | 5 | 6 | 209 | 4 | 215 | 9.14e-43 | 145 |
MS.gene69231.t1 | MTR_2g015510 | 36.493 | 211 | 128 | 2 | 5 | 209 | 4 | 214 | 2.66e-42 | 145 |
MS.gene69231.t1 | MTR_7g068520 | 36.400 | 250 | 60 | 5 | 6 | 255 | 3 | 153 | 6.22e-40 | 135 |
MS.gene69231.t1 | MTR_4g105680 | 34.562 | 217 | 128 | 4 | 24 | 232 | 47 | 257 | 3.31e-34 | 124 |
MS.gene69231.t1 | MTR_2g015480 | 33.168 | 202 | 114 | 7 | 15 | 209 | 66 | 253 | 7.81e-26 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69231.t1 | AT3G11210 | 70.703 | 256 | 75 | 0 | 1 | 256 | 1 | 256 | 3.56e-142 | 399 |
MS.gene69231.t1 | AT2G38180 | 61.739 | 230 | 82 | 2 | 1 | 228 | 1 | 226 | 2.79e-102 | 300 |
MS.gene69231.t1 | AT5G62930 | 37.500 | 232 | 136 | 2 | 6 | 232 | 2 | 229 | 8.57e-55 | 177 |
MS.gene69231.t1 | AT5G62930 | 37.500 | 232 | 136 | 2 | 6 | 232 | 28 | 255 | 1.99e-54 | 176 |
MS.gene69231.t1 | AT5G45920 | 40.566 | 212 | 115 | 4 | 6 | 209 | 3 | 211 | 2.73e-50 | 165 |
MS.gene69231.t1 | AT5G45920 | 40.566 | 212 | 115 | 4 | 6 | 209 | 3 | 211 | 2.73e-50 | 165 |
MS.gene69231.t1 | AT5G45920 | 39.362 | 188 | 103 | 4 | 6 | 185 | 3 | 187 | 1.42e-41 | 141 |
MS.gene69231.t1 | AT5G45920 | 39.362 | 188 | 103 | 4 | 6 | 185 | 3 | 187 | 1.42e-41 | 141 |
MS.gene69231.t1 | AT5G62930 | 32.450 | 151 | 97 | 1 | 65 | 210 | 3 | 153 | 6.19e-28 | 105 |
Find 50 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTTGTCATAGTTTATTT+TGG | 0.117407 | 3.2:+64168847 | MS.gene69231:CDS |
AAAGATTCTCGTTCATATTC+AGG | 0.237645 | 3.2:+64168948 | MS.gene69231:CDS |
TGCTTCCCTCGGCTGCTAAA+TGG | 0.258371 | 3.2:-64170499 | None:intergenic |
CAGAGAGGTTCAGTGGGATT+AGG | 0.324071 | 3.2:+64170682 | MS.gene69231:CDS |
AGAGATATTGAAAGTACTTA+AGG | 0.366404 | 3.2:+64170535 | MS.gene69231:CDS |
GGAAAACTTGATGGAGGACT+TGG | 0.366424 | 3.2:-64168024 | None:intergenic |
ATACCTTTGGGAAAACTTGA+TGG | 0.386117 | 3.2:-64168033 | None:intergenic |
CAGTTACAGCCATAGTGGTT+GGG | 0.391779 | 3.2:+64166830 | MS.gene69231:CDS |
AGACCTCAATTTGTTCTCTT+CGG | 0.393518 | 3.2:+64166789 | MS.gene69231:CDS |
TCCATGGGTCCTCACTCATC+TGG | 0.396852 | 3.2:+64168880 | MS.gene69231:CDS |
CACTACAAAGTATAGATGAT+TGG | 0.413474 | 3.2:+64169910 | MS.gene69231:CDS |
GGTCCTCACTCATCTGGTCT+AGG | 0.440601 | 3.2:+64168886 | MS.gene69231:CDS |
AGAACAAATTGAGGTCTTGC+AGG | 0.448548 | 3.2:-64166783 | None:intergenic |
GAAAGGAACCCCAACCACTA+TGG | 0.455649 | 3.2:-64166839 | None:intergenic |
TACAAGCGTCAGAATAGCTT+CGG | 0.460418 | 3.2:-64169839 | None:intergenic |
ATTGGAAGCCATGCCTCCAC+TGG | 0.465238 | 3.2:+64170564 | MS.gene69231:CDS |
ACTACAAAGTATAGATGATT+GGG | 0.472047 | 3.2:+64169911 | MS.gene69231:CDS |
AGAATAGATGTCAGAAAGAA+AGG | 0.473416 | 3.2:-64166856 | None:intergenic |
TATGATCTTGTTGCTGCTGA+TGG | 0.480251 | 3.2:+64170623 | MS.gene69231:CDS |
AGTTACAGCCATAGTGGTTG+GGG | 0.481840 | 3.2:+64166831 | MS.gene69231:CDS |
TTCTGACATCTATTCTCGTA+AGG | 0.485495 | 3.2:+64166863 | MS.gene69231:CDS |
AAGTACTTAAGGAGGCTGAT+TGG | 0.489555 | 3.2:+64170546 | MS.gene69231:CDS |
ATAAAGCTATGCAAGGAACT+TGG | 0.525996 | 3.2:+64169861 | MS.gene69231:CDS |
CAGCTCAGTTACAGCCATAG+TGG | 0.530252 | 3.2:+64166825 | MS.gene69231:CDS |
CTCTCTGTGAAAAGTCCACT+CGG | 0.533550 | 3.2:-64170666 | None:intergenic |
TCAGTTACAGCCATAGTGGT+TGG | 0.535752 | 3.2:+64166829 | MS.gene69231:CDS |
TTTGCGATATATTCTTCAAG+TGG | 0.536290 | 3.2:-64168919 | None:intergenic |
ACCAGATGAGTGAGGACCCA+TGG | 0.547376 | 3.2:-64168881 | None:intergenic |
ATGATCTTGTTGCTGCTGAT+GGG | 0.556497 | 3.2:+64170624 | MS.gene69231:CDS |
TTTGGAGGCAATGATTCCAT+GGG | 0.556589 | 3.2:+64168865 | MS.gene69231:CDS |
GATCCGAAGAGAACAAATTG+AGG | 0.565485 | 3.2:-64166792 | None:intergenic |
AAATAAACTATGACAAGAGA+AGG | 0.569239 | 3.2:-64168844 | None:intergenic |
CTGTGAAAAGTCCACTCGGA+AGG | 0.571490 | 3.2:-64170662 | None:intergenic |
TATTCTTCAAGTGGCACATG+AGG | 0.571651 | 3.2:-64168910 | None:intergenic |
ATAGACTTCCAGTGGAGGCA+TGG | 0.576601 | 3.2:-64170572 | None:intergenic |
TGGTATCCATTTAGCAGCCG+AGG | 0.597982 | 3.2:+64170493 | MS.gene69231:CDS |
CGCTTGTATAAAGCTATGCA+AGG | 0.603226 | 3.2:+64169854 | MS.gene69231:CDS |
ATATTGTTACGAGGATACTA+CGG | 0.604736 | 3.2:+64167980 | MS.gene69231:CDS |
GATATTGAAAGTACTTAAGG+AGG | 0.616083 | 3.2:+64170538 | MS.gene69231:CDS |
TGTTACGAGGATACTACGGA+TGG | 0.628648 | 3.2:+64167984 | MS.gene69231:CDS |
GGTATCCATTTAGCAGCCGA+GGG | 0.630946 | 3.2:+64170494 | MS.gene69231:CDS |
CAGTGTGCATAGACTTCCAG+TGG | 0.638815 | 3.2:-64170580 | None:intergenic |
ATTCTTCAAGTGGCACATGA+GGG | 0.639837 | 3.2:-64168909 | None:intergenic |
AGCCGAGGGAAGCAAAATTG+TGG | 0.643278 | 3.2:+64170508 | MS.gene69231:CDS |
CCTTTGGGAAAACTTGATGG+AGG | 0.663764 | 3.2:-64168030 | None:intergenic |
GCTGTAACTGAGCTGAACGA+TGG | 0.666914 | 3.2:-64166817 | None:intergenic |
TAGGCAGATATATTGTTACG+AGG | 0.680324 | 3.2:+64167971 | MS.gene69231:intron |
TGTGCATAGACTTCCAGTGG+AGG | 0.686536 | 3.2:-64170577 | None:intergenic |
GAACATTGAATCCTTCCGAG+TGG | 0.687868 | 3.2:+64170651 | MS.gene69231:CDS |
GGGCCTAGACCAGATGAGTG+AGG | 0.694487 | 3.2:-64168889 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAATTGTATATTTCAAAA+AGG | - | chr3.2:64167025-64167044 | None:intergenic | 10.0% |
!!! | TAAGAGTATTAAATTATTAA+TGG | - | chr3.2:64167806-64167825 | None:intergenic | 10.0% |
!!! | TATATTTTTCATCATTATTA+AGG | - | chr3.2:64169501-64169520 | None:intergenic | 10.0% |
!!! | TATTTTAAAAAACAAAAAGA+AGG | + | chr3.2:64167447-64167466 | MS.gene69231:intron | 10.0% |
!!! | TTGAAATATACAATTATTTT+GGG | + | chr3.2:64167027-64167046 | MS.gene69231:intron | 10.0% |
!!! | TTTGAAATATACAATTATTT+TGG | + | chr3.2:64167026-64167045 | MS.gene69231:intron | 10.0% |
!!! | TTTTATTTTTAAATATGCAT+AGG | + | chr3.2:64168344-64168363 | MS.gene69231:intron | 10.0% |
!! | AAAATAAAAATCATATACGA+TGG | - | chr3.2:64168333-64168352 | None:intergenic | 15.0% |
!! | AATAAAATTGATTAAGAAAG+AGG | - | chr3.2:64169966-64169985 | None:intergenic | 15.0% |
!! | ATAATTTAATACTCTTACAT+TGG | + | chr3.2:64167809-64167828 | MS.gene69231:intron | 15.0% |
!! | TTTCTTGTGAAATATATTAA+AGG | + | chr3.2:64170355-64170374 | MS.gene69231:intron | 15.0% |
!!! | AAAAACTTGTTCTTTTTAAA+CGG | - | chr3.2:64167658-64167677 | None:intergenic | 15.0% |
!!! | AAAATACTAGATTAATGTTT+TGG | + | chr3.2:64166970-64166989 | MS.gene69231:intron | 15.0% |
!!! | AAATACTAGATTAATGTTTT+GGG | + | chr3.2:64166971-64166990 | MS.gene69231:intron | 15.0% |
!!! | AAGATTTAAAAAAAAGTACA+AGG | - | chr3.2:64167285-64167304 | None:intergenic | 15.0% |
!!! | ATAACTTGTAAAAAAGAATA+TGG | + | chr3.2:64170407-64170426 | MS.gene69231:intron | 15.0% |
!!! | GTATAATTTTGAAAACTTTT+GGG | + | chr3.2:64167105-64167124 | MS.gene69231:intron | 15.0% |
!!! | TAACTTGTAAAAAAGAATAT+GGG | + | chr3.2:64170408-64170427 | MS.gene69231:intron | 15.0% |
!!! | TATAATTTTGAAAACTTTTG+GGG | + | chr3.2:64167106-64167125 | MS.gene69231:intron | 15.0% |
!!! | TGTATAATTTTGAAAACTTT+TGG | + | chr3.2:64167104-64167123 | MS.gene69231:intron | 15.0% |
!! | TACTATAAGAAAATCAATCA+TGG | - | chr3.2:64167354-64167373 | None:intergenic | 20.0% |
!! | TTATATTTAGCAATTTGAGA+AGG | - | chr3.2:64167485-64167504 | None:intergenic | 20.0% |
!! | TTCTCAAATTGCTAAATATA+AGG | + | chr3.2:64167484-64167503 | MS.gene69231:intron | 20.0% |
!!! | GAAAGAGAAAAATATGTTTT+AGG | - | chr3.2:64169702-64169721 | None:intergenic | 20.0% |
!!! | GATGTAAAATTACTCATTTT+AGG | + | chr3.2:64167952-64167971 | MS.gene69231:intron | 20.0% |
!!! | TCTTATAGTATTTCTGTTAT+TGG | + | chr3.2:64167364-64167383 | MS.gene69231:intron | 20.0% |
!!! | TTTCTAAAGACACAATATTA+AGG | + | chr3.2:64168186-64168205 | MS.gene69231:intron | 20.0% |
! | AAATAAACTATGACAAGAGA+AGG | - | chr3.2:64168847-64168866 | None:intergenic | 25.0% |
! | AAATTAGGTACAATACCTTT+GGG | - | chr3.2:64168048-64168067 | None:intergenic | 25.0% |
! | AAGGAAAAAAAATCATGATC+AGG | - | chr3.2:64167873-64167892 | None:intergenic | 25.0% |
! | AATACATGGATAATAGTTTG+AGG | + | chr3.2:64169349-64169368 | MS.gene69231:intron | 25.0% |
! | ACAAAACAAAAAATCACAGT+TGG | - | chr3.2:64167579-64167598 | None:intergenic | 25.0% |
! | ACTACAAAGTATAGATGATT+GGG | + | chr3.2:64169911-64169930 | MS.gene69231:CDS | 25.0% |
! | ACTTGATATTTCTTGGTATT+TGG | - | chr3.2:64169992-64170011 | None:intergenic | 25.0% |
! | ATATATTCCATTACATTGGA+AGG | - | chr3.2:64169105-64169124 | None:intergenic | 25.0% |
! | ATTAAGCTGTTTATCAAAAC+AGG | + | chr3.2:64168730-64168749 | MS.gene69231:intron | 25.0% |
! | CAAACAATAACTTAGACTAA+AGG | - | chr3.2:64170186-64170205 | None:intergenic | 25.0% |
! | CAAATTGCTAAATATAAGGT+TGG | + | chr3.2:64167488-64167507 | MS.gene69231:intron | 25.0% |
! | CAAGATATATTCCATTACAT+TGG | - | chr3.2:64169109-64169128 | None:intergenic | 25.0% |
! | CATCAAAGTTAATATTATGG+AGG | + | chr3.2:64167906-64167925 | MS.gene69231:intron | 25.0% |
! | CGTCATCAAAGTTAATATTA+TGG | + | chr3.2:64167903-64167922 | MS.gene69231:intron | 25.0% |
! | CTAAGTTTGAGTAAAATACA+TGG | + | chr3.2:64169335-64169354 | MS.gene69231:intron | 25.0% |
! | CTAAGTTTGTGTAAAATACA+TGG | + | chr3.2:64169288-64169307 | MS.gene69231:intron | 25.0% |
! | CTTGTATTCAACATGATTTA+TGG | + | chr3.2:64168119-64168138 | MS.gene69231:intron | 25.0% |
! | GAGATAGTAAGTAAAACATA+TGG | - | chr3.2:64168462-64168481 | None:intergenic | 25.0% |
! | GTTGAAATAATCTATGGAAA+CGG | + | chr3.2:64168545-64168564 | MS.gene69231:intron | 25.0% |
! | TAAAACAGTAACAAGTCAAA+CGG | + | chr3.2:64169407-64169426 | MS.gene69231:intron | 25.0% |
! | TTAAGCTGTTTATCAAAACA+GGG | + | chr3.2:64168731-64168750 | MS.gene69231:intron | 25.0% |
! | TTAATACTCTTACATTGGTA+TGG | + | chr3.2:64167814-64167833 | MS.gene69231:intron | 25.0% |
! | TTGATATTCTAGTGTTTAGA+CGG | + | chr3.2:64167390-64167409 | MS.gene69231:intron | 25.0% |
! | TTTACTTACTATCTCTCTTA+GGG | + | chr3.2:64168467-64168486 | MS.gene69231:intron | 25.0% |
!! | GATATCAATTTTGTCTCTTA+CGG | + | chr3.2:64170226-64170245 | MS.gene69231:intron | 25.0% |
!! | TATTAATGGAGTATTTGTAC+AGG | - | chr3.2:64167792-64167811 | None:intergenic | 25.0% |
!! | TCTCTTGTCATAGTTTATTT+TGG | + | chr3.2:64168847-64168866 | MS.gene69231:CDS | 25.0% |
!! | TTGTGTCTTTAGAAATTAAG+CGG | - | chr3.2:64168181-64168200 | None:intergenic | 25.0% |
!! | TTTTACTTACTATCTCTCTT+AGG | + | chr3.2:64168466-64168485 | MS.gene69231:intron | 25.0% |
!!! | AAAATTGCACTGATTAAGAA+AGG | - | chr3.2:64169789-64169808 | None:intergenic | 25.0% |
!!! | AGAGATATTGAAAGTACTTA+AGG | + | chr3.2:64170535-64170554 | MS.gene69231:CDS | 25.0% |
!!! | CAGAAACATTTCATTTTTCA+TGG | - | chr3.2:64168427-64168446 | None:intergenic | 25.0% |
!!! | GTGATTTTTTGTTTTGTTTG+TGG | + | chr3.2:64167582-64167601 | MS.gene69231:intron | 25.0% |
!!! | TCTTTTTTACAAGTTATGTC+AGG | - | chr3.2:64170404-64170423 | None:intergenic | 25.0% |
AAAGATTCTCGTTCATATTC+AGG | + | chr3.2:64168948-64168967 | MS.gene69231:CDS | 30.0% | |
AAGGTTACTTCAATGATGTT+AGG | + | chr3.2:64170285-64170304 | MS.gene69231:intron | 30.0% | |
ACAATATTGAAACTCACTAC+TGG | - | chr3.2:64167217-64167236 | None:intergenic | 30.0% | |
AGAAAAGTTAGTGAAGGATT+TGG | - | chr3.2:64170043-64170062 | None:intergenic | 30.0% | |
AGAATAGATGTCAGAAAGAA+AGG | - | chr3.2:64166859-64166878 | None:intergenic | 30.0% | |
AGATATCTATCTCCAATACT+TGG | - | chr3.2:64169021-64169040 | None:intergenic | 30.0% | |
AGTGAAAAATGACATGTTGT+AGG | + | chr3.2:64169448-64169467 | MS.gene69231:intron | 30.0% | |
ATATTGTTACGAGGATACTA+CGG | + | chr3.2:64167980-64167999 | MS.gene69231:CDS | 30.0% | |
ATTAGGCAATTGTTCGTTAT+GGG | - | chr3.2:64168263-64168282 | None:intergenic | 30.0% | |
CAAAAATTATTGTATGGTGC+AGG | - | chr3.2:64168796-64168815 | None:intergenic | 30.0% | |
CAAATTAGGTACAATACCTT+TGG | - | chr3.2:64168049-64168068 | None:intergenic | 30.0% | |
CAATATTGAAACTCACTACT+GGG | - | chr3.2:64167216-64167235 | None:intergenic | 30.0% | |
CACTACAAAGTATAGATGAT+TGG | + | chr3.2:64169910-64169929 | MS.gene69231:CDS | 30.0% | |
GAGACTGTTGAAATAATCTA+TGG | + | chr3.2:64168539-64168558 | MS.gene69231:intron | 30.0% | |
GTATATTTCAAAAAGGCAGA+AGG | - | chr3.2:64167018-64167037 | None:intergenic | 30.0% | |
GTATTCAACATGATTTATGG+TGG | + | chr3.2:64168122-64168141 | MS.gene69231:intron | 30.0% | |
GTGGGACAAAAATTATTGTA+TGG | - | chr3.2:64168802-64168821 | None:intergenic | 30.0% | |
TAACCTTAAAATCGTCTTTC+CGG | - | chr3.2:64170272-64170291 | None:intergenic | 30.0% | |
TACGCATAGATAAACTTGAT+TGG | - | chr3.2:64168225-64168244 | None:intergenic | 30.0% | |
TACTTGAGAAAAGTTAGTGA+AGG | - | chr3.2:64170049-64170068 | None:intergenic | 30.0% | |
TAGAATAGTATATACGCTAC+CGG | - | chr3.2:64168292-64168311 | None:intergenic | 30.0% | |
TGGGCTATGTTTAAGAAAAT+GGG | + | chr3.2:64167046-64167065 | MS.gene69231:intron | 30.0% | |
TGTTAAACCTTCCAATGTAA+TGG | + | chr3.2:64169095-64169114 | MS.gene69231:intron | 30.0% | |
TTCAATGAATTATGCAGTGA+TGG | + | chr3.2:64170473-64170492 | MS.gene69231:intron | 30.0% | |
TTGGGCTATGTTTAAGAAAA+TGG | + | chr3.2:64167045-64167064 | MS.gene69231:intron | 30.0% | |
TTTGCGATATATTCTTCAAG+TGG | - | chr3.2:64168922-64168941 | None:intergenic | 30.0% | |
! | ACATGTCCATAAACTGTTTT+CGG | + | chr3.2:64168574-64168593 | MS.gene69231:intron | 30.0% |
! | GTATGTCACTTGATATTTCT+TGG | - | chr3.2:64169999-64170018 | None:intergenic | 30.0% |
! | TGCTAAATATAAGGTTGGTT+TGG | + | chr3.2:64167493-64167512 | MS.gene69231:intron | 30.0% |
! | TTACTCAAACTTAGTCTTCA+GGG | - | chr3.2:64169329-64169348 | None:intergenic | 30.0% |
! | TTTACTCAAACTTAGTCTTC+AGG | - | chr3.2:64169330-64169349 | None:intergenic | 30.0% |
!! | AAAATATGTTTTAGGCTACC+TGG | - | chr3.2:64169694-64169713 | None:intergenic | 30.0% |
!! | CAAAGGTATTGTACCTAATT+TGG | + | chr3.2:64168047-64168066 | MS.gene69231:intron | 30.0% |
!! | GATATTGAAAGTACTTAAGG+AGG | + | chr3.2:64170538-64170557 | MS.gene69231:CDS | 30.0% |
!! | GGCTTGTTTCTATAAGTTTA+AGG | + | chr3.2:64168595-64168614 | MS.gene69231:intron | 30.0% |
!! | TTTTGAAAACTTTTGGGGAA+AGG | + | chr3.2:64167111-64167130 | MS.gene69231:intron | 30.0% |
!!! | CTTGTCATAGTTTATTTTGG+AGG | + | chr3.2:64168850-64168869 | MS.gene69231:CDS | 30.0% |
AAAAAATCACAGTTGGAGTG+GGG | - | chr3.2:64167572-64167591 | None:intergenic | 35.0% | |
AACAAGCCGAAAACAGTTTA+TGG | - | chr3.2:64168583-64168602 | None:intergenic | 35.0% | |
AACCTTAAAATCGTCTTTCC+GGG | - | chr3.2:64170271-64170290 | None:intergenic | 35.0% | |
ACAAAAAATCACAGTTGGAG+TGG | - | chr3.2:64167574-64167593 | None:intergenic | 35.0% | |
ATAAAGCTATGCAAGGAACT+TGG | + | chr3.2:64169861-64169880 | MS.gene69231:CDS | 35.0% | |
ATGCAGATATCTGCCAAATT+AGG | - | chr3.2:64168063-64168082 | None:intergenic | 35.0% | |
CAAAAAATCACAGTTGGAGT+GGG | - | chr3.2:64167573-64167592 | None:intergenic | 35.0% | |
CAAGGAAAGAATTGATGTTG+GGG | + | chr3.2:64167178-64167197 | MS.gene69231:intron | 35.0% | |
CATGTTGTAGGATGAAAGAA+TGG | + | chr3.2:64169460-64169479 | MS.gene69231:intron | 35.0% | |
CCAACATCAATTCTTTCCTT+GGG | - | chr3.2:64167179-64167198 | None:intergenic | 35.0% | |
CCAAGGAAAGAATTGATGTT+GGG | + | chr3.2:64167177-64167196 | MS.gene69231:intron | 35.0% | |
GAAAGGAGTAACTAGTAGTA+AGG | + | chr3.2:64167128-64167147 | MS.gene69231:intron | 35.0% | |
GAATATATCTTGTCTTACCC+GGG | + | chr3.2:64169117-64169136 | MS.gene69231:intron | 35.0% | |
GATTAGGCAATTGTTCGTTA+TGG | - | chr3.2:64168264-64168283 | None:intergenic | 35.0% | |
GATTTAAGGATTGGAGTGAT+AGG | + | chr3.2:64167529-64167548 | MS.gene69231:intron | 35.0% | |
GGAATATATCTTGTCTTACC+CGG | + | chr3.2:64169116-64169135 | MS.gene69231:intron | 35.0% | |
GTGTACTCAATGATGAAACA+TGG | + | chr3.2:64169175-64169194 | MS.gene69231:intron | 35.0% | |
TACAAGTTATGTCAGGTTAG+AGG | - | chr3.2:64170397-64170416 | None:intergenic | 35.0% | |
TAGGCAGATATATTGTTACG+AGG | + | chr3.2:64167971-64167990 | MS.gene69231:intron | 35.0% | |
TATCTATCTCCAATACTTGG+AGG | - | chr3.2:64169018-64169037 | None:intergenic | 35.0% | |
TATCTCTCTTAGGGTATGTT+TGG | + | chr3.2:64168476-64168495 | MS.gene69231:intron | 35.0% | |
TCAAGTTTATCTATGCGTAG+TGG | + | chr3.2:64168226-64168245 | MS.gene69231:intron | 35.0% | |
TCTATATAACCAACTCCTTC+TGG | + | chr3.2:64170152-64170171 | MS.gene69231:intron | 35.0% | |
TTCTGACATCTATTCTCGTA+AGG | + | chr3.2:64166863-64166882 | MS.gene69231:CDS | 35.0% | |
! | AGACCTCAATTTGTTCTCTT+CGG | + | chr3.2:64166789-64166808 | MS.gene69231:CDS | 35.0% |
! | ATAAGCGTTTGTTGCACAAA+TGG | + | chr3.2:64168692-64168711 | MS.gene69231:intron | 35.0% |
! | ATACCTTTGGGAAAACTTGA+TGG | - | chr3.2:64168036-64168055 | None:intergenic | 35.0% |
! | GTACAAGGTCATTACTCTTT+TGG | - | chr3.2:64167270-64167289 | None:intergenic | 35.0% |
! | TAAGCGTTTGTTGCACAAAT+GGG | + | chr3.2:64168693-64168712 | MS.gene69231:intron | 35.0% |
! | TAATTTTTGTCCCACTTCAC+AGG | + | chr3.2:64168807-64168826 | MS.gene69231:intron | 35.0% |
! | TACTCAAACTTAGTCTTCAG+GGG | - | chr3.2:64169328-64169347 | None:intergenic | 35.0% |
!! | ACTGACCTTATCTTTTTGAG+TGG | + | chr3.2:64167242-64167261 | MS.gene69231:intron | 35.0% |
!!! | CAGTGCAATTTTTAGTGAGT+TGG | + | chr3.2:64169797-64169816 | MS.gene69231:intron | 35.0% |
!!! | CTGACCTTATCTTTTTGAGT+GGG | + | chr3.2:64167243-64167262 | MS.gene69231:intron | 35.0% |
!!! | TCTTGTTTTCATCTCTTACG+TGG | + | chr3.2:64166918-64166937 | MS.gene69231:intron | 35.0% |
AAGTACTTAAGGAGGCTGAT+TGG | + | chr3.2:64170546-64170565 | MS.gene69231:CDS | 40.0% | |
AAGTGCCTATTGTAGCTTGA+GGG | - | chr3.2:64167156-64167175 | None:intergenic | 40.0% | |
AATAGTATATACGCTACCGG+AGG | - | chr3.2:64168289-64168308 | None:intergenic | 40.0% | |
AATCACCATGAGCATCTCTT+AGG | - | chr3.2:64167756-64167775 | None:intergenic | 40.0% | |
AATTATTGTATGGTGCAGGC+AGG | - | chr3.2:64168792-64168811 | None:intergenic | 40.0% | |
ACAATTGCCTAATCTTCCTC+CGG | + | chr3.2:64168270-64168289 | MS.gene69231:intron | 40.0% | |
AGAACAAATTGAGGTCTTGC+AGG | - | chr3.2:64166786-64166805 | None:intergenic | 40.0% | |
AGTAACAAGTCAAACGGATG+AGG | + | chr3.2:64169413-64169432 | MS.gene69231:intron | 40.0% | |
ATATAACCAACTCCTTCTGG+TGG | + | chr3.2:64170155-64170174 | MS.gene69231:intron | 40.0% | |
ATGATCTTGTTGCTGCTGAT+GGG | + | chr3.2:64170624-64170643 | MS.gene69231:CDS | 40.0% | |
ATTCTCCTAAGAGATGCTCA+TGG | + | chr3.2:64167748-64167767 | MS.gene69231:intron | 40.0% | |
ATTCTTCAAGTGGCACATGA+GGG | - | chr3.2:64168912-64168931 | None:intergenic | 40.0% | |
CAAGACATGTTGCAATAACG+AGG | - | chr3.2:64167691-64167710 | None:intergenic | 40.0% | |
CAATACTTGGAGGACACTAA+TGG | - | chr3.2:64169008-64169027 | None:intergenic | 40.0% | |
CAGGTTAGAGGACACTAAAA+AGG | - | chr3.2:64170385-64170404 | None:intergenic | 40.0% | |
CATTAGTGTCCTCCAAGTAT+TGG | + | chr3.2:64169006-64169025 | MS.gene69231:intron | 40.0% | |
CCCAACATCAATTCTTTCCT+TGG | - | chr3.2:64167180-64167199 | None:intergenic | 40.0% | |
CCCAAGGAAAGAATTGATGT+TGG | + | chr3.2:64167176-64167195 | MS.gene69231:intron | 40.0% | |
CGCTTGTATAAAGCTATGCA+AGG | + | chr3.2:64169854-64169873 | MS.gene69231:CDS | 40.0% | |
CTCGTTATTGCAACATGTCT+TGG | + | chr3.2:64167689-64167708 | MS.gene69231:intron | 40.0% | |
CTGCACGAACTTATACAAAC+AGG | - | chr3.2:64168391-64168410 | None:intergenic | 40.0% | |
CTGTTTGTATAAGTTCGTGC+AGG | + | chr3.2:64168389-64168408 | MS.gene69231:intron | 40.0% | |
GATCCGAAGAGAACAAATTG+AGG | - | chr3.2:64166795-64166814 | None:intergenic | 40.0% | |
GTAACAAGTCAAACGGATGA+GGG | + | chr3.2:64169414-64169433 | MS.gene69231:intron | 40.0% | |
TACAAGCGTCAGAATAGCTT+CGG | - | chr3.2:64169842-64169861 | None:intergenic | 40.0% | |
TAGGATTACCAGCTCTACAT+TGG | + | chr3.2:64168363-64168382 | MS.gene69231:intron | 40.0% | |
TAGGGTGGAGATTTAAGGAT+TGG | + | chr3.2:64167520-64167539 | MS.gene69231:intron | 40.0% | |
TATAACCAACTCCTTCTGGT+GGG | + | chr3.2:64170156-64170175 | MS.gene69231:intron | 40.0% | |
TATGATCTTGTTGCTGCTGA+TGG | + | chr3.2:64170623-64170642 | MS.gene69231:CDS | 40.0% | |
TATTCTTCAAGTGGCACATG+AGG | - | chr3.2:64168913-64168932 | None:intergenic | 40.0% | |
TCGATGCTTTCTTTGCTAGA+TGG | + | chr3.2:64170081-64170100 | MS.gene69231:intron | 40.0% | |
TGGCAAATATGTGTGTGAAG+TGG | + | chr3.2:64167834-64167853 | MS.gene69231:intron | 40.0% | |
TGGTCCCACTCAAAAAGATA+AGG | - | chr3.2:64167250-64167269 | None:intergenic | 40.0% | |
TTTGGAGGCAATGATTCCAT+GGG | + | chr3.2:64168865-64168884 | MS.gene69231:CDS | 40.0% | |
! | AAGCGTTTGTTGCACAAATG+GGG | + | chr3.2:64168694-64168713 | MS.gene69231:intron | 40.0% |
! | ACTCAAACTTAGTCTTCAGG+GGG | - | chr3.2:64169327-64169346 | None:intergenic | 40.0% |
! | GTTCGTTATGGGTTTTTGTC+CGG | - | chr3.2:64168252-64168271 | None:intergenic | 40.0% |
! | TACCCGGAAAGACGATTTTA+AGG | + | chr3.2:64170266-64170285 | MS.gene69231:intron | 40.0% |
! | TCAGTTTTGCAGTTTGTACC+CGG | + | chr3.2:64170250-64170269 | MS.gene69231:intron | 40.0% |
! | TGATACGTGTCTTTTCAGAG+AGG | - | chr3.2:64169623-64169642 | None:intergenic | 40.0% |
! | TGTGCGCAACGAAACAATTT+TGG | - | chr3.2:64169147-64169166 | None:intergenic | 40.0% |
! | TTTTCACAGAGAGGTTCAGT+GGG | + | chr3.2:64170676-64170695 | MS.gene69231:CDS | 40.0% |
!! | ACTTTTTCTTCATGGACAGG+AGG | - | chr3.2:64169660-64169679 | None:intergenic | 40.0% |
!! | ATAAGGTTGGTTTGGTGTCT+AGG | + | chr3.2:64167501-64167520 | MS.gene69231:intron | 40.0% |
!! | CATGATTTATGGTGGATGCA+CGG | + | chr3.2:64168130-64168149 | MS.gene69231:intron | 40.0% |
!! | CGAAACAATTTTGGAGAACC+CGG | - | chr3.2:64169138-64169157 | None:intergenic | 40.0% |
!! | GAAACAATTTTGGAGAACCC+GGG | - | chr3.2:64169137-64169156 | None:intergenic | 40.0% |
!! | TAAGGTTGGTTTGGTGTCTA+GGG | + | chr3.2:64167502-64167521 | MS.gene69231:intron | 40.0% |
!! | TTGATGACGAGAAGCAAGAA+AGG | - | chr3.2:64167892-64167911 | None:intergenic | 40.0% |
!! | TTTTGGAGGCAATGATTCCA+TGG | + | chr3.2:64168864-64168883 | MS.gene69231:CDS | 40.0% |
AGTGCCTATTGTAGCTTGAG+GGG | - | chr3.2:64167155-64167174 | None:intergenic | 45.0% | |
AGTTACAGCCATAGTGGTTG+GGG | + | chr3.2:64166831-64166850 | MS.gene69231:CDS | 45.0% | |
CAGTTACAGCCATAGTGGTT+GGG | + | chr3.2:64166830-64166849 | MS.gene69231:CDS | 45.0% | |
CTCTCTGTGAAAAGTCCACT+CGG | - | chr3.2:64170669-64170688 | None:intergenic | 45.0% | |
CTCTTAGGAGAATACGAGGA+AGG | - | chr3.2:64167741-64167760 | None:intergenic | 45.0% | |
GAACATTGAATCCTTCCGAG+TGG | + | chr3.2:64170651-64170670 | MS.gene69231:CDS | 45.0% | |
GCATCTCTTAGGAGAATACG+AGG | - | chr3.2:64167745-64167764 | None:intergenic | 45.0% | |
GGAAAACTTGATGGAGGACT+TGG | - | chr3.2:64168027-64168046 | None:intergenic | 45.0% | |
GTAACCGTTAGCATCACACT+CGG | - | chr3.2:64167617-64167636 | None:intergenic | 45.0% | |
GTTTATCTATGCGTAGTGGC+CGG | + | chr3.2:64168230-64168249 | MS.gene69231:intron | 45.0% | |
TCAGTTACAGCCATAGTGGT+TGG | + | chr3.2:64166829-64166848 | MS.gene69231:CDS | 45.0% | |
TGCACAAATGGGGTTACAGA+CGG | + | chr3.2:64168704-64168723 | MS.gene69231:intron | 45.0% | |
TGTTACGAGGATACTACGGA+TGG | + | chr3.2:64167984-64168003 | MS.gene69231:CDS | 45.0% | |
! | CACCACAATTTTGCTTCCCT+CGG | - | chr3.2:64170513-64170532 | None:intergenic | 45.0% |
! | CCTCCATCAAGTTTTCCCAA+AGG | + | chr3.2:64168030-64168049 | MS.gene69231:CDS | 45.0% |
! | CCTTTGGGAAAACTTGATGG+AGG | - | chr3.2:64168033-64168052 | None:intergenic | 45.0% |
! | CTAAAGGTTTTCCCACCAGA+AGG | - | chr3.2:64170170-64170189 | None:intergenic | 45.0% |
! | CTCAAACTTAGTCTTCAGGG+GGG | - | chr3.2:64169326-64169345 | None:intergenic | 45.0% |
! | CTTTTCACAGAGAGGTTCAG+TGG | + | chr3.2:64170675-64170694 | MS.gene69231:CDS | 45.0% |
! | GAAGTGCCTATTGTAGCTTG+AGG | - | chr3.2:64167157-64167176 | None:intergenic | 45.0% |
! | GTCCATGAAGAAAAAGTGCG+CGG | + | chr3.2:64169663-64169682 | MS.gene69231:CDS | 45.0% |
! | GTGTCTAGGGTGGAGATTTA+AGG | + | chr3.2:64167515-64167534 | MS.gene69231:intron | 45.0% |
! | TCAAACTTAGTCTTCAGGGG+GGG | - | chr3.2:64169325-64169344 | None:intergenic | 45.0% |
!!! | CGCACTTTTTCTTCATGGAC+AGG | - | chr3.2:64169663-64169682 | None:intergenic | 45.0% |
!!! | TTCCGCGCACTTTTTCTTCA+TGG | - | chr3.2:64169668-64169687 | None:intergenic | 45.0% |
!!! | TATGATATTTTTTTTTTTTT+TGG | - | chr3.2:64169259-64169278 | None:intergenic | 5.0% |
AACAGGTGCCAATGTAGAGC+TGG | - | chr3.2:64168374-64168393 | None:intergenic | 50.0% | |
AGCCGAGGGAAGCAAAATTG+TGG | + | chr3.2:64170508-64170527 | MS.gene69231:CDS | 50.0% | |
AGGTCCCCTCAAGCTACAAT+AGG | + | chr3.2:64167148-64167167 | MS.gene69231:intron | 50.0% | |
ATAGACTTCCAGTGGAGGCA+TGG | - | chr3.2:64170575-64170594 | None:intergenic | 50.0% | |
CACTCCGAGTGTGATGCTAA+CGG | + | chr3.2:64167610-64167629 | MS.gene69231:intron | 50.0% | |
CAGCTCAGTTACAGCCATAG+TGG | + | chr3.2:64166825-64166844 | MS.gene69231:CDS | 50.0% | |
CAGTGTGCATAGACTTCCAG+TGG | - | chr3.2:64170583-64170602 | None:intergenic | 50.0% | |
CTGTGAAAAGTCCACTCGGA+AGG | - | chr3.2:64170665-64170684 | None:intergenic | 50.0% | |
GAAAGGAACCCCAACCACTA+TGG | - | chr3.2:64166842-64166861 | None:intergenic | 50.0% | |
GCTACAATAGGCACTTCCCA+AGG | + | chr3.2:64167160-64167179 | MS.gene69231:intron | 50.0% | |
GCTCATGGTGATTGCAGAGT+AGG | + | chr3.2:64167763-64167782 | MS.gene69231:intron | 50.0% | |
GCTGTAACTGAGCTGAACGA+TGG | - | chr3.2:64166820-64166839 | None:intergenic | 50.0% | |
GGTATCCATTTAGCAGCCGA+GGG | + | chr3.2:64170494-64170513 | MS.gene69231:CDS | 50.0% | |
GTAGCAGCATCCTGTGAAGT+GGG | - | chr3.2:64168820-64168839 | None:intergenic | 50.0% | |
TACGCTACCGGAGGAAGATT+AGG | - | chr3.2:64168280-64168299 | None:intergenic | 50.0% | |
TGGAGTGATAGGAAGACCGA+GGG | + | chr3.2:64167540-64167559 | MS.gene69231:intron | 50.0% | |
TGGTATCCATTTAGCAGCCG+AGG | + | chr3.2:64170493-64170512 | MS.gene69231:CDS | 50.0% | |
TGTAGCAGCATCCTGTGAAG+TGG | - | chr3.2:64168821-64168840 | None:intergenic | 50.0% | |
TGTGCATAGACTTCCAGTGG+AGG | - | chr3.2:64170580-64170599 | None:intergenic | 50.0% | |
TTGGAGTGATAGGAAGACCG+AGG | + | chr3.2:64167539-64167558 | MS.gene69231:intron | 50.0% | |
! | AAAAAGTGCGCGGAAACACC+AGG | + | chr3.2:64169673-64169692 | MS.gene69231:CDS | 50.0% |
! | GTGTCTTTTCAGAGAGGCTC+TGG | - | chr3.2:64169617-64169636 | None:intergenic | 50.0% |
! | GTTTTCCCACCAGAAGGAGT+TGG | - | chr3.2:64170164-64170183 | None:intergenic | 50.0% |
!! | CGAGTGGACTTTTCACAGAG+AGG | + | chr3.2:64170667-64170686 | MS.gene69231:CDS | 50.0% |
ACCAGATGAGTGAGGACCCA+TGG | - | chr3.2:64168884-64168903 | None:intergenic | 55.0% | |
ATTGGAAGCCATGCCTCCAC+TGG | + | chr3.2:64170564-64170583 | MS.gene69231:CDS | 55.0% | |
GGTCCTCACTCATCTGGTCT+AGG | + | chr3.2:64168886-64168905 | MS.gene69231:CDS | 55.0% | |
TCCATGGGTCCTCACTCATC+TGG | + | chr3.2:64168880-64168899 | MS.gene69231:CDS | 55.0% | |
TGCTTCCCTCGGCTGCTAAA+TGG | - | chr3.2:64170502-64170521 | None:intergenic | 55.0% | |
!! | GGTTGGTTTGGTGTCTAGGG+TGG | + | chr3.2:64167505-64167524 | MS.gene69231:intron | 55.0% |
GGGCCTAGACCAGATGAGTG+AGG | - | chr3.2:64168892-64168911 | None:intergenic | 60.0% | |
TGGAGTGGGGATCGAACCCT+CGG | - | chr3.2:64167559-64167578 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 64166774 | 64170703 | 64166774 | ID=MS.gene69231 |
chr3.2 | mRNA | 64166774 | 64170703 | 64166774 | ID=MS.gene69231.t1;Parent=MS.gene69231 |
chr3.2 | exon | 64166774 | 64166884 | 64166774 | ID=MS.gene69231.t1.exon1;Parent=MS.gene69231.t1 |
chr3.2 | CDS | 64166774 | 64166884 | 64166774 | ID=cds.MS.gene69231.t1;Parent=MS.gene69231.t1 |
chr3.2 | exon | 64167974 | 64168051 | 64167974 | ID=MS.gene69231.t1.exon2;Parent=MS.gene69231.t1 |
chr3.2 | CDS | 64167974 | 64168051 | 64167974 | ID=cds.MS.gene69231.t1;Parent=MS.gene69231.t1 |
chr3.2 | exon | 64168829 | 64168969 | 64168829 | ID=MS.gene69231.t1.exon3;Parent=MS.gene69231.t1 |
chr3.2 | CDS | 64168829 | 64168969 | 64168829 | ID=cds.MS.gene69231.t1;Parent=MS.gene69231.t1 |
chr3.2 | exon | 64169618 | 64169694 | 64169618 | ID=MS.gene69231.t1.exon4;Parent=MS.gene69231.t1 |
chr3.2 | CDS | 64169618 | 64169694 | 64169618 | ID=cds.MS.gene69231.t1;Parent=MS.gene69231.t1 |
chr3.2 | exon | 64169800 | 64169949 | 64169800 | ID=MS.gene69231.t1.exon5;Parent=MS.gene69231.t1 |
chr3.2 | CDS | 64169800 | 64169949 | 64169800 | ID=cds.MS.gene69231.t1;Parent=MS.gene69231.t1 |
chr3.2 | exon | 64170490 | 64170703 | 64170490 | ID=MS.gene69231.t1.exon6;Parent=MS.gene69231.t1 |
chr3.2 | CDS | 64170490 | 64170703 | 64170490 | ID=cds.MS.gene69231.t1;Parent=MS.gene69231.t1 |
Gene Sequence |
Protein sequence |