Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008064.t1 | XP_003600886.1 | 99.6 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 2.70E-147 | 531.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008064.t1 | Q9SRM5 | 70.7 | 256 | 75 | 0 | 1 | 256 | 1 | 256 | 3.9e-110 | 399.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008064.t1 | G7JB85 | 99.6 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 1.9e-147 | 531.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene01669 | MS.gene008064 | PPI |
| MS.gene008064 | MS.gene01667 | PPI |
| MS.gene008064 | MS.gene48374 | PPI |
| MS.gene071404 | MS.gene008064 | PPI |
| MS.gene008064 | MS.gene004221 | PPI |
| MS.gene008064 | MS.gene01668 | PPI |
| MS.gene008064 | MS.gene071406 | PPI |
| MS.gene008064 | MS.gene002547 | PPI |
| MS.gene008064 | MS.gene002548 | PPI |
| MS.gene008064 | MS.gene56873 | PPI |
| MS.gene008064 | MS.gene01523 | PPI |
| MS.gene008064 | MS.gene01526 | PPI |
| MS.gene008064 | MS.gene004220 | PPI |
| MS.gene008064 | MS.gene071405 | PPI |
| MS.gene008064 | MS.gene002546 | PPI |
| MS.gene008064 | MS.gene004219 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008064.t1 | MTR_3g070460 | 99.609 | 256 | 1 | 0 | 1 | 256 | 1 | 256 | 0.0 | 532 |
| MS.gene008064.t1 | MTR_4g016510 | 66.406 | 256 | 86 | 0 | 1 | 256 | 1 | 256 | 6.02e-128 | 363 |
| MS.gene008064.t1 | MTR_7g068530 | 62.109 | 256 | 94 | 2 | 1 | 256 | 1 | 253 | 1.81e-118 | 339 |
| MS.gene008064.t1 | MTR_7g068460 | 61.660 | 253 | 95 | 2 | 3 | 255 | 30 | 280 | 4.99e-115 | 331 |
| MS.gene008064.t1 | MTR_7g068500 | 60.079 | 253 | 99 | 2 | 3 | 255 | 29 | 279 | 8.83e-112 | 323 |
| MS.gene008064.t1 | MTR_7g068550 | 57.812 | 256 | 106 | 1 | 1 | 256 | 1 | 254 | 2.12e-110 | 318 |
| MS.gene008064.t1 | MTR_7g068470 | 60.000 | 250 | 97 | 3 | 6 | 255 | 2 | 248 | 1.38e-107 | 311 |
| MS.gene008064.t1 | MTR_7g068470 | 58.800 | 250 | 96 | 4 | 6 | 255 | 2 | 244 | 3.91e-103 | 300 |
| MS.gene008064.t1 | MTR_7g068450 | 52.549 | 255 | 116 | 3 | 6 | 256 | 2 | 255 | 4.58e-94 | 277 |
| MS.gene008064.t1 | MTR_4g016500 | 39.640 | 222 | 63 | 3 | 35 | 256 | 277 | 427 | 1.46e-45 | 158 |
| MS.gene008064.t1 | MTR_2g015500 | 36.449 | 214 | 124 | 5 | 6 | 209 | 4 | 215 | 9.14e-43 | 145 |
| MS.gene008064.t1 | MTR_2g015510 | 36.493 | 211 | 128 | 2 | 5 | 209 | 4 | 214 | 2.66e-42 | 145 |
| MS.gene008064.t1 | MTR_7g068520 | 36.400 | 250 | 60 | 5 | 6 | 255 | 3 | 153 | 6.22e-40 | 135 |
| MS.gene008064.t1 | MTR_4g105680 | 34.562 | 217 | 128 | 4 | 24 | 232 | 47 | 257 | 3.31e-34 | 124 |
| MS.gene008064.t1 | MTR_2g015480 | 33.168 | 202 | 114 | 7 | 15 | 209 | 66 | 253 | 7.81e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008064.t1 | AT3G11210 | 70.703 | 256 | 75 | 0 | 1 | 256 | 1 | 256 | 3.56e-142 | 399 |
| MS.gene008064.t1 | AT2G38180 | 61.739 | 230 | 82 | 2 | 1 | 228 | 1 | 226 | 2.79e-102 | 300 |
| MS.gene008064.t1 | AT5G62930 | 37.500 | 232 | 136 | 2 | 6 | 232 | 2 | 229 | 8.57e-55 | 177 |
| MS.gene008064.t1 | AT5G62930 | 37.500 | 232 | 136 | 2 | 6 | 232 | 28 | 255 | 1.99e-54 | 176 |
| MS.gene008064.t1 | AT5G45920 | 40.566 | 212 | 115 | 4 | 6 | 209 | 3 | 211 | 2.73e-50 | 165 |
| MS.gene008064.t1 | AT5G45920 | 40.566 | 212 | 115 | 4 | 6 | 209 | 3 | 211 | 2.73e-50 | 165 |
| MS.gene008064.t1 | AT5G45920 | 39.362 | 188 | 103 | 4 | 6 | 185 | 3 | 187 | 1.42e-41 | 141 |
| MS.gene008064.t1 | AT5G45920 | 39.362 | 188 | 103 | 4 | 6 | 185 | 3 | 187 | 1.42e-41 | 141 |
| MS.gene008064.t1 | AT5G62930 | 32.450 | 151 | 97 | 1 | 65 | 210 | 3 | 153 | 6.19e-28 | 105 |
Find 51 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTGTCATAGTTTATTT+TGG | 0.117407 | 3.3:+61612124 | MS.gene008064:CDS |
| AAAGATTCTCGTTCATATTC+AGG | 0.237645 | 3.3:+61612225 | MS.gene008064:CDS |
| TGCTCCCCTCAGCTGCTAAA+TGG | 0.269995 | 3.3:-61613772 | None:intergenic |
| CAGAGAGGTTCAGTGGGATT+AGG | 0.324071 | 3.3:+61613955 | MS.gene008064:CDS |
| AGAGATATTGAAAGTACTTA+AGG | 0.366404 | 3.3:+61613808 | MS.gene008064:CDS |
| GGAAAACTTGATGGAGGACT+TGG | 0.366424 | 3.3:-61611305 | None:intergenic |
| ATACCTTTGGGAAAACTTGA+TGG | 0.386117 | 3.3:-61611314 | None:intergenic |
| CAGTTACAGCCATAGTGGTT+GGG | 0.391779 | 3.3:+61610118 | MS.gene008064:CDS |
| AGACCTCAATTTGTTCTCTT+CGG | 0.393518 | 3.3:+61610077 | MS.gene008064:CDS |
| TCCATGGGTCCTCACTCATC+TGG | 0.396852 | 3.3:+61612157 | MS.gene008064:CDS |
| CACTACAAAGTATAGATGAT+TGG | 0.413474 | 3.3:+61613183 | MS.gene008064:CDS |
| GGTCCTCACTCATCTGGTCT+AGG | 0.440601 | 3.3:+61612163 | MS.gene008064:CDS |
| AGAACAAATTGAGGTCTTGC+AGG | 0.448548 | 3.3:-61610071 | None:intergenic |
| GAAAGGAACCCCAACCACTA+TGG | 0.455649 | 3.3:-61610127 | None:intergenic |
| TACAAGCGTCAGAATAGCTT+CGG | 0.460418 | 3.3:-61613112 | None:intergenic |
| ATTGGAAGCCATGCCTCCAC+TGG | 0.465238 | 3.3:+61613837 | MS.gene008064:CDS |
| ACTACAAAGTATAGATGATT+GGG | 0.472047 | 3.3:+61613184 | MS.gene008064:CDS |
| AGAATAGATGTCAGAAAGAA+AGG | 0.473416 | 3.3:-61610144 | None:intergenic |
| TATGATCTTGTTGCTGCTGA+TGG | 0.480251 | 3.3:+61613896 | MS.gene008064:CDS |
| AGTTACAGCCATAGTGGTTG+GGG | 0.481840 | 3.3:+61610119 | MS.gene008064:CDS |
| TTCTGACATCTATTCTCGTA+AGG | 0.485495 | 3.3:+61610151 | MS.gene008064:CDS |
| AAGTACTTAAGGAGGCTGAT+TGG | 0.489555 | 3.3:+61613819 | MS.gene008064:CDS |
| ATAAAGCTATGCAAGGAACT+TGG | 0.525996 | 3.3:+61613134 | MS.gene008064:CDS |
| CAGCTCAGTTACAGCCATAG+TGG | 0.530252 | 3.3:+61610113 | MS.gene008064:CDS |
| CTCTCTGTGAAAAGTCCACT+CGG | 0.533550 | 3.3:-61613939 | None:intergenic |
| TCAGTTACAGCCATAGTGGT+TGG | 0.535752 | 3.3:+61610117 | MS.gene008064:CDS |
| TTTGCGATATATTCTTCAAG+TGG | 0.536290 | 3.3:-61612196 | None:intergenic |
| ACCAGATGAGTGAGGACCCA+TGG | 0.547376 | 3.3:-61612158 | None:intergenic |
| ATGATCTTGTTGCTGCTGAT+GGG | 0.556497 | 3.3:+61613897 | MS.gene008064:CDS |
| TTTGGAGGCAATGATTCCAT+GGG | 0.556589 | 3.3:+61612142 | MS.gene008064:CDS |
| GATCCGAAGAGAACAAATTG+AGG | 0.565485 | 3.3:-61610080 | None:intergenic |
| AAATAAACTATGACAAGAGA+AGG | 0.569239 | 3.3:-61612121 | None:intergenic |
| CTGTGAAAAGTCCACTCGGA+AGG | 0.571490 | 3.3:-61613935 | None:intergenic |
| TATTCTTCAAGTGGCACATG+AGG | 0.571651 | 3.3:-61612187 | None:intergenic |
| ATAGACTTCCAGTGGAGGCA+TGG | 0.576601 | 3.3:-61613845 | None:intergenic |
| GGTATCCATTTAGCAGCTGA+GGG | 0.579189 | 3.3:+61613767 | MS.gene008064:CDS |
| TGGTATCCATTTAGCAGCTG+AGG | 0.586119 | 3.3:+61613766 | MS.gene008064:CDS |
| AGCTGAGGGGAGCAAAATTG+TGG | 0.595319 | 3.3:+61613781 | MS.gene008064:CDS |
| CGCTTGTATAAAGCTATGCA+AGG | 0.603226 | 3.3:+61613127 | MS.gene008064:CDS |
| ATATTGTTACGAGGATACTA+CGG | 0.604736 | 3.3:+61611261 | MS.gene008064:CDS |
| GATATTGAAAGTACTTAAGG+AGG | 0.616083 | 3.3:+61613811 | MS.gene008064:CDS |
| TGTTACGAGGATACTACGGA+TGG | 0.628648 | 3.3:+61611265 | MS.gene008064:CDS |
| CAGTGTGCATAGACTTCCAG+TGG | 0.638815 | 3.3:-61613853 | None:intergenic |
| ATTCTTCAAGTGGCACATGA+GGG | 0.639837 | 3.3:-61612186 | None:intergenic |
| CCTTTGGGAAAACTTGATGG+AGG | 0.663764 | 3.3:-61611311 | None:intergenic |
| GCTGTAACTGAGCTGAACGA+TGG | 0.666914 | 3.3:-61610105 | None:intergenic |
| TAGGCAGATATATTGTTACG+AGG | 0.680324 | 3.3:+61611252 | MS.gene008064:intron |
| TGTGCATAGACTTCCAGTGG+AGG | 0.686536 | 3.3:-61613850 | None:intergenic |
| GAACATTGAATCCTTCCGAG+TGG | 0.687868 | 3.3:+61613924 | MS.gene008064:CDS |
| GGGCCTAGACCAGATGAGTG+AGG | 0.694487 | 3.3:-61612166 | None:intergenic |
| GTATCCATTTAGCAGCTGAG+GGG | 0.731566 | 3.3:+61613768 | MS.gene008064:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTGTATATTTCAAAA+AGG | - | chr3.3:61610309-61610328 | None:intergenic | 10.0% |
| !!! | AATATAATTTTGAAAACTTT+TGG | + | chr3.3:61610384-61610403 | MS.gene008064:intron | 10.0% |
| !!! | ATATAATTTTGAAAACTTTT+GGG | + | chr3.3:61610385-61610404 | MS.gene008064:intron | 10.0% |
| !!! | TAAGAGTATTAAATTATTAA+TGG | - | chr3.3:61611087-61611106 | None:intergenic | 10.0% |
| !!! | TATTTTAAAAAACAAAAAGA+AGG | + | chr3.3:61610727-61610746 | MS.gene008064:intron | 10.0% |
| !!! | TTGAAATATACAATTATTTT+GGG | + | chr3.3:61610311-61610330 | MS.gene008064:intron | 10.0% |
| !!! | TTTGAAATATACAATTATTT+TGG | + | chr3.3:61610310-61610329 | MS.gene008064:intron | 10.0% |
| !!! | TTTTTATTTTAAATATGCAT+AGG | + | chr3.3:61611624-61611643 | MS.gene008064:intron | 10.0% |
| !! | AAAATAAAAATCATATACGA+TGG | - | chr3.3:61611614-61611633 | None:intergenic | 15.0% |
| !! | AATAAAATTGATTAAGAAAG+AGG | - | chr3.3:61613239-61613258 | None:intergenic | 15.0% |
| !! | ATAATTTAATACTCTTACAT+TGG | + | chr3.3:61611090-61611109 | MS.gene008064:intron | 15.0% |
| !! | TATATTCTTCATCATTATTA+AGG | - | chr3.3:61612774-61612793 | None:intergenic | 15.0% |
| !! | TTTCTTGTGAAATATATTAA+AGG | + | chr3.3:61613628-61613647 | MS.gene008064:intron | 15.0% |
| !!! | AAAAACTTGTTCTTTTTAAA+CGG | - | chr3.3:61610938-61610957 | None:intergenic | 15.0% |
| !!! | AAAATACTAGATTAATGTTT+TGG | + | chr3.3:61610254-61610273 | MS.gene008064:intron | 15.0% |
| !!! | AAATACTAGATTAATGTTTT+GGG | + | chr3.3:61610255-61610274 | MS.gene008064:intron | 15.0% |
| !!! | AAGATTTAAAAAAAAGTACA+AGG | - | chr3.3:61610565-61610584 | None:intergenic | 15.0% |
| !!! | ATAACTTGTAAAAAAGAATA+TGG | + | chr3.3:61613680-61613699 | MS.gene008064:intron | 15.0% |
| !!! | TAACTTGTAAAAAAGAATAT+GGG | + | chr3.3:61613681-61613700 | MS.gene008064:intron | 15.0% |
| !!! | TATAATTTTGAAAACTTTTG+GGG | + | chr3.3:61610386-61610405 | MS.gene008064:intron | 15.0% |
| !! | ACAAAAAAAAAATTCACAGT+TGG | - | chr3.3:61610859-61610878 | None:intergenic | 20.0% |
| !! | TACTATAAGAAAATCAATCA+TGG | - | chr3.3:61610634-61610653 | None:intergenic | 20.0% |
| !! | TTATATTTAGCAATTTGAGA+AGG | - | chr3.3:61610765-61610784 | None:intergenic | 20.0% |
| !! | TTCTCAAATTGCTAAATATA+AGG | + | chr3.3:61610764-61610783 | MS.gene008064:intron | 20.0% |
| !!! | GAAAGAGAAAAATATGTTTT+AGG | - | chr3.3:61612975-61612994 | None:intergenic | 20.0% |
| !!! | GATGTAAAATTACTCATTTT+AGG | + | chr3.3:61611233-61611252 | MS.gene008064:intron | 20.0% |
| !!! | GTGAATTTTTTTTTTGTTTG+TGG | + | chr3.3:61610862-61610881 | MS.gene008064:intron | 20.0% |
| !!! | TCTTATAGTATTTCTGTTAT+TGG | + | chr3.3:61610644-61610663 | MS.gene008064:intron | 20.0% |
| !!! | TTTCTAAAGACACAATATTA+AGG | + | chr3.3:61611467-61611486 | MS.gene008064:intron | 20.0% |
| ! | AAATAAACTATGACAAGAGA+AGG | - | chr3.3:61612124-61612143 | None:intergenic | 25.0% |
| ! | AAATTAGGTACAATACCTTT+GGG | - | chr3.3:61611329-61611348 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAAATCATGATC+AGG | - | chr3.3:61611154-61611173 | None:intergenic | 25.0% |
| ! | AATACATGGATAATAGTTTG+AGG | + | chr3.3:61612622-61612641 | MS.gene008064:intron | 25.0% |
| ! | ACTACAAAGTATAGATGATT+GGG | + | chr3.3:61613184-61613203 | MS.gene008064:CDS | 25.0% |
| ! | ACTTGATATTTCTTGGTATT+TGG | - | chr3.3:61613265-61613284 | None:intergenic | 25.0% |
| ! | ATATATTCCATTACATTGGA+AGG | - | chr3.3:61612382-61612401 | None:intergenic | 25.0% |
| ! | ATTAAGCTGTTTATCAAAAC+AGG | + | chr3.3:61612007-61612026 | MS.gene008064:intron | 25.0% |
| ! | CAAACAATAACTTAGACTAA+AGG | - | chr3.3:61613459-61613478 | None:intergenic | 25.0% |
| ! | CAAATTGCTAAATATAAGGT+TGG | + | chr3.3:61610768-61610787 | MS.gene008064:intron | 25.0% |
| ! | CAAGATATATTCCATTACAT+TGG | - | chr3.3:61612386-61612405 | None:intergenic | 25.0% |
| ! | CATCAAAGTTAATATTATGG+AGG | + | chr3.3:61611187-61611206 | MS.gene008064:intron | 25.0% |
| ! | CGTCATCAAAGTTAATATTA+TGG | + | chr3.3:61611184-61611203 | MS.gene008064:intron | 25.0% |
| ! | CTAAGTTTGAGTAAAATACA+TGG | + | chr3.3:61612608-61612627 | MS.gene008064:intron | 25.0% |
| ! | CTAAGTTTGTGTAAAATACA+TGG | + | chr3.3:61612561-61612580 | MS.gene008064:intron | 25.0% |
| ! | CTTGTATTCAACATGATTTA+TGG | + | chr3.3:61611400-61611419 | MS.gene008064:intron | 25.0% |
| ! | GAGATAGTAAGTAAAACATA+TGG | - | chr3.3:61611742-61611761 | None:intergenic | 25.0% |
| ! | GTGAGACAAAAATTATTGTA+TGG | - | chr3.3:61612079-61612098 | None:intergenic | 25.0% |
| ! | GTTGAAATAATCTATGGAAA+CGG | + | chr3.3:61611823-61611842 | MS.gene008064:intron | 25.0% |
| ! | TAAAACAGTAACAAGTCAAA+CGG | + | chr3.3:61612680-61612699 | MS.gene008064:intron | 25.0% |
| ! | TTAAGCTGTTTATCAAAACA+GGG | + | chr3.3:61612008-61612027 | MS.gene008064:intron | 25.0% |
| ! | TTAATACTCTTACATTGGTA+TGG | + | chr3.3:61611095-61611114 | MS.gene008064:intron | 25.0% |
| ! | TTGATATTCTAGTGTTTAGA+CGG | + | chr3.3:61610670-61610689 | MS.gene008064:intron | 25.0% |
| !! | GATATCAATTTTGTCTCTTA+CGG | + | chr3.3:61613499-61613518 | MS.gene008064:intron | 25.0% |
| !! | GTTTTACTTACTATCTCTTA+GGG | + | chr3.3:61611745-61611764 | MS.gene008064:intron | 25.0% |
| !! | TATTAATGGAGTATTTGTAC+AGG | - | chr3.3:61611073-61611092 | None:intergenic | 25.0% |
| !! | TCTCTTGTCATAGTTTATTT+TGG | + | chr3.3:61612124-61612143 | MS.gene008064:CDS | 25.0% |
| !! | TGTTTTACTTACTATCTCTT+AGG | + | chr3.3:61611744-61611763 | MS.gene008064:intron | 25.0% |
| !! | TTGTGTCTTTAGAAATTAAG+CGG | - | chr3.3:61611462-61611481 | None:intergenic | 25.0% |
| !!! | AAAATTGCACTGATTAAGAA+AGG | - | chr3.3:61613062-61613081 | None:intergenic | 25.0% |
| !!! | AGAGATATTGAAAGTACTTA+AGG | + | chr3.3:61613808-61613827 | MS.gene008064:CDS | 25.0% |
| !!! | AGCTTGTTTCTATAAGTTTA+AGG | + | chr3.3:61611872-61611891 | MS.gene008064:intron | 25.0% |
| !!! | CAGAAACATTTCATTTTTCA+TGG | - | chr3.3:61611707-61611726 | None:intergenic | 25.0% |
| !!! | TCTTTTTTACAAGTTATGTC+AGG | - | chr3.3:61613677-61613696 | None:intergenic | 25.0% |
| AAAAAAATTCACAGTTGGAG+TGG | - | chr3.3:61610854-61610873 | None:intergenic | 30.0% | |
| AAAAAATTCACAGTTGGAGT+GGG | - | chr3.3:61610853-61610872 | None:intergenic | 30.0% | |
| AAACAAGCTGAAAACAGTTA+TGG | - | chr3.3:61611861-61611880 | None:intergenic | 30.0% | |
| AAAGATTCTCGTTCATATTC+AGG | + | chr3.3:61612225-61612244 | MS.gene008064:CDS | 30.0% | |
| AAGGTTACTTCAATGATGTT+AGG | + | chr3.3:61613558-61613577 | MS.gene008064:intron | 30.0% | |
| AGAAAAGTTAGTGAAGGATT+TGG | - | chr3.3:61613316-61613335 | None:intergenic | 30.0% | |
| AGAATAGATGTCAGAAAGAA+AGG | - | chr3.3:61610147-61610166 | None:intergenic | 30.0% | |
| AGATATCTATCTCCAATACT+TGG | - | chr3.3:61612298-61612317 | None:intergenic | 30.0% | |
| AGTGAAAAATGACATGTTGT+AGG | + | chr3.3:61612721-61612740 | MS.gene008064:intron | 30.0% | |
| ATATTGTTACGAGGATACTA+CGG | + | chr3.3:61611261-61611280 | MS.gene008064:CDS | 30.0% | |
| ATTAGGCAATTGTTCGTTAT+GGG | - | chr3.3:61611544-61611563 | None:intergenic | 30.0% | |
| CAAAAATTATTGTATGGTGC+AGG | - | chr3.3:61612073-61612092 | None:intergenic | 30.0% | |
| CAAATTAGGTACAATACCTT+TGG | - | chr3.3:61611330-61611349 | None:intergenic | 30.0% | |
| CACTACAAAGTATAGATGAT+TGG | + | chr3.3:61613183-61613202 | MS.gene008064:CDS | 30.0% | |
| GAATATATCTTGTCTTACCT+GGG | + | chr3.3:61612394-61612413 | MS.gene008064:intron | 30.0% | |
| GAGACTGTTGAAATAATCTA+TGG | + | chr3.3:61611817-61611836 | MS.gene008064:intron | 30.0% | |
| GTAAGTAGTAACTAGTAGTA+AGG | + | chr3.3:61610408-61610427 | MS.gene008064:intron | 30.0% | |
| GTATATTTCAAAAAGGCAGA+AGG | - | chr3.3:61610302-61610321 | None:intergenic | 30.0% | |
| GTATTCAACATGATTTATGG+TGG | + | chr3.3:61611403-61611422 | MS.gene008064:intron | 30.0% | |
| TACGCATAGATAAACTTGAT+TGG | - | chr3.3:61611506-61611525 | None:intergenic | 30.0% | |
| TACTTGAGAAAAGTTAGTGA+AGG | - | chr3.3:61613322-61613341 | None:intergenic | 30.0% | |
| TAGAATAGTATATACGCTAC+CGG | - | chr3.3:61611573-61611592 | None:intergenic | 30.0% | |
| TGGGCTATGTTTAAGAAAAT+GGG | + | chr3.3:61610330-61610349 | MS.gene008064:intron | 30.0% | |
| TGTTAAACCTTCCAATGTAA+TGG | + | chr3.3:61612372-61612391 | MS.gene008064:intron | 30.0% | |
| TTCAATGAATTATGCAGTGA+TGG | + | chr3.3:61613746-61613765 | MS.gene008064:intron | 30.0% | |
| TTGGGCTATGTTTAAGAAAA+TGG | + | chr3.3:61610329-61610348 | MS.gene008064:intron | 30.0% | |
| TTTGCGATATATTCTTCAAG+TGG | - | chr3.3:61612199-61612218 | None:intergenic | 30.0% | |
| ! | GTATGTCACTTGATATTTCT+TGG | - | chr3.3:61613272-61613291 | None:intergenic | 30.0% |
| ! | TAATTTTTGTCTCACTTCAC+AGG | + | chr3.3:61612084-61612103 | MS.gene008064:intron | 30.0% |
| ! | TGCTAAATATAAGGTTGGTT+TGG | + | chr3.3:61610773-61610792 | MS.gene008064:intron | 30.0% |
| ! | TTACTCAAACTTAGTCTTCA+GGG | - | chr3.3:61612602-61612621 | None:intergenic | 30.0% |
| ! | TTTACTCAAACTTAGTCTTC+AGG | - | chr3.3:61612603-61612622 | None:intergenic | 30.0% |
| !! | AAAATATGTTTTAGGCTACC+TGG | - | chr3.3:61612967-61612986 | None:intergenic | 30.0% |
| !! | CAAAGGTATTGTACCTAATT+TGG | + | chr3.3:61611328-61611347 | MS.gene008064:intron | 30.0% |
| !! | GATATTGAAAGTACTTAAGG+AGG | + | chr3.3:61613811-61613830 | MS.gene008064:CDS | 30.0% |
| !!! | CTTGTCATAGTTTATTTTGG+AGG | + | chr3.3:61612127-61612146 | MS.gene008064:CDS | 30.0% |
| AAAAATTCACAGTTGGAGTG+GGG | - | chr3.3:61610852-61610871 | None:intergenic | 35.0% | |
| AATCACTATGAGCATCTCTT+AGG | - | chr3.3:61611037-61611056 | None:intergenic | 35.0% | |
| ACAACATTGAAACTCACTAC+TGG | - | chr3.3:61610497-61610516 | None:intergenic | 35.0% | |
| ACTATCTCTTAGGGTATGTT+TGG | + | chr3.3:61611754-61611773 | MS.gene008064:intron | 35.0% | |
| ATAAAGCTATGCAAGGAACT+TGG | + | chr3.3:61613134-61613153 | MS.gene008064:CDS | 35.0% | |
| ATGCAGATATCTGCCAAATT+AGG | - | chr3.3:61611344-61611363 | None:intergenic | 35.0% | |
| CAACATTGAAACTCACTACT+GGG | - | chr3.3:61610496-61610515 | None:intergenic | 35.0% | |
| CATGTTGTAGGATGAAAGAA+TGG | + | chr3.3:61612733-61612752 | MS.gene008064:intron | 35.0% | |
| CCAACATCAATTCTTTCCTT+GGG | - | chr3.3:61610459-61610478 | None:intergenic | 35.0% | |
| CCAAGGAAAGAATTGATGTT+GGG | + | chr3.3:61610457-61610476 | MS.gene008064:intron | 35.0% | |
| GATTAGGCAATTGTTCGTTA+TGG | - | chr3.3:61611545-61611564 | None:intergenic | 35.0% | |
| GATTTAAGGATTGGAGTGAT+AGG | + | chr3.3:61610809-61610828 | MS.gene008064:intron | 35.0% | |
| GGAATATATCTTGTCTTACC+TGG | + | chr3.3:61612393-61612412 | MS.gene008064:intron | 35.0% | |
| GTGTACTCAATGATGAAACA+TGG | + | chr3.3:61612452-61612471 | MS.gene008064:intron | 35.0% | |
| TAACCTTAAAACCGTCTTTC+CGG | - | chr3.3:61613545-61613564 | None:intergenic | 35.0% | |
| TACAAGTTATGTCAGGTTAG+AGG | - | chr3.3:61613670-61613689 | None:intergenic | 35.0% | |
| TAGGCAGATATATTGTTACG+AGG | + | chr3.3:61611252-61611271 | MS.gene008064:intron | 35.0% | |
| TAGGGTGAAGATTTAAGGAT+TGG | + | chr3.3:61610800-61610819 | MS.gene008064:intron | 35.0% | |
| TATCTATCTCCAATACTTGG+AGG | - | chr3.3:61612295-61612314 | None:intergenic | 35.0% | |
| TCAAGTTTATCTATGCGTAG+TGG | + | chr3.3:61611507-61611526 | MS.gene008064:intron | 35.0% | |
| TCTATATAACCAACTCCTTC+TGG | + | chr3.3:61613425-61613444 | MS.gene008064:intron | 35.0% | |
| TTCTGACATCTATTCTCGTA+AGG | + | chr3.3:61610151-61610170 | MS.gene008064:CDS | 35.0% | |
| ! | AGACCTCAATTTGTTCTCTT+CGG | + | chr3.3:61610077-61610096 | MS.gene008064:CDS | 35.0% |
| ! | ATAAGCGTTTGTTGCACAAA+TGG | + | chr3.3:61611969-61611988 | MS.gene008064:intron | 35.0% |
| ! | ATACCTTTGGGAAAACTTGA+TGG | - | chr3.3:61611317-61611336 | None:intergenic | 35.0% |
| ! | GTACAAGGTCATTACTCTTT+TGG | - | chr3.3:61610550-61610569 | None:intergenic | 35.0% |
| ! | TAAGCGTTTGTTGCACAAAT+GGG | + | chr3.3:61611970-61611989 | MS.gene008064:intron | 35.0% |
| ! | TACTCAAACTTAGTCTTCAG+GGG | - | chr3.3:61612601-61612620 | None:intergenic | 35.0% |
| !! | ACTGACCTTATCTTTTTGAG+TGG | + | chr3.3:61610522-61610541 | MS.gene008064:intron | 35.0% |
| !!! | CAGTGCAATTTTTAGTGAGT+TGG | + | chr3.3:61613070-61613089 | MS.gene008064:intron | 35.0% |
| !!! | CTGACCTTATCTTTTTGAGT+GGG | + | chr3.3:61610523-61610542 | MS.gene008064:intron | 35.0% |
| !!! | TCTTGTTTTCATCTCTTACG+TGG | + | chr3.3:61610202-61610221 | MS.gene008064:intron | 35.0% |
| AACCTTAAAACCGTCTTTCC+GGG | - | chr3.3:61613544-61613563 | None:intergenic | 40.0% | |
| AAGTACTTAAGGAGGCTGAT+TGG | + | chr3.3:61613819-61613838 | MS.gene008064:CDS | 40.0% | |
| AAGTGCCTATTGTAGCTTGA+GGG | - | chr3.3:61610436-61610455 | None:intergenic | 40.0% | |
| AATAGTATATACGCTACCGG+AGG | - | chr3.3:61611570-61611589 | None:intergenic | 40.0% | |
| AATTATTGTATGGTGCAGGC+AGG | - | chr3.3:61612069-61612088 | None:intergenic | 40.0% | |
| ACAATTGCCTAATCTTCCTC+CGG | + | chr3.3:61611551-61611570 | MS.gene008064:intron | 40.0% | |
| AGAACAAATTGAGGTCTTGC+AGG | - | chr3.3:61610074-61610093 | None:intergenic | 40.0% | |
| AGTAACAAGTCAAACGGATG+AGG | + | chr3.3:61612686-61612705 | MS.gene008064:intron | 40.0% | |
| ATATAACCAACTCCTTCTGG+TGG | + | chr3.3:61613428-61613447 | MS.gene008064:intron | 40.0% | |
| ATGATCTTGTTGCTGCTGAT+GGG | + | chr3.3:61613897-61613916 | MS.gene008064:CDS | 40.0% | |
| ATTCTTCAAGTGGCACATGA+GGG | - | chr3.3:61612189-61612208 | None:intergenic | 40.0% | |
| CAAGACATGTTGCAATAACG+AGG | - | chr3.3:61610972-61610991 | None:intergenic | 40.0% | |
| CAATACTTGGAGGACACTAA+TGG | - | chr3.3:61612285-61612304 | None:intergenic | 40.0% | |
| CAGGTTAGAGGACACTAAAA+GGG | - | chr3.3:61613658-61613677 | None:intergenic | 40.0% | |
| CATTAGTGTCCTCCAAGTAT+TGG | + | chr3.3:61612283-61612302 | MS.gene008064:intron | 40.0% | |
| CCCAACATCAATTCTTTCCT+TGG | - | chr3.3:61610460-61610479 | None:intergenic | 40.0% | |
| CCCAAGGAAAGAATTGATGT+TGG | + | chr3.3:61610456-61610475 | MS.gene008064:intron | 40.0% | |
| CGCTTGTATAAAGCTATGCA+AGG | + | chr3.3:61613127-61613146 | MS.gene008064:CDS | 40.0% | |
| CTCGTTATTGCAACATGTCT+TGG | + | chr3.3:61610970-61610989 | MS.gene008064:intron | 40.0% | |
| CTGCACGAACTTATACAAAC+AGG | - | chr3.3:61611671-61611690 | None:intergenic | 40.0% | |
| CTGTTTGTATAAGTTCGTGC+AGG | + | chr3.3:61611669-61611688 | MS.gene008064:intron | 40.0% | |
| GATCCGAAGAGAACAAATTG+AGG | - | chr3.3:61610083-61610102 | None:intergenic | 40.0% | |
| GTAACAAGTCAAACGGATGA+GGG | + | chr3.3:61612687-61612706 | MS.gene008064:intron | 40.0% | |
| TACAAGCGTCAGAATAGCTT+CGG | - | chr3.3:61613115-61613134 | None:intergenic | 40.0% | |
| TAGGATTACCAGCTCTACAT+TGG | + | chr3.3:61611643-61611662 | MS.gene008064:intron | 40.0% | |
| TATAACCAACTCCTTCTGGT+GGG | + | chr3.3:61613429-61613448 | MS.gene008064:intron | 40.0% | |
| TATGATCTTGTTGCTGCTGA+TGG | + | chr3.3:61613896-61613915 | MS.gene008064:CDS | 40.0% | |
| TATTCTTCAAGTGGCACATG+AGG | - | chr3.3:61612190-61612209 | None:intergenic | 40.0% | |
| TCAGGTTAGAGGACACTAAA+AGG | - | chr3.3:61613659-61613678 | None:intergenic | 40.0% | |
| TCGATGCTTTCTTTGCTAGA+TGG | + | chr3.3:61613354-61613373 | MS.gene008064:intron | 40.0% | |
| TGGCAAATATGTGTGTGAAG+TGG | + | chr3.3:61611115-61611134 | MS.gene008064:intron | 40.0% | |
| TGGTCCCACTCAAAAAGATA+AGG | - | chr3.3:61610530-61610549 | None:intergenic | 40.0% | |
| TTTGGAGGCAATGATTCCAT+GGG | + | chr3.3:61612142-61612161 | MS.gene008064:CDS | 40.0% | |
| ! | AAGCGTTTGTTGCACAAATG+GGG | + | chr3.3:61611971-61611990 | MS.gene008064:intron | 40.0% |
| ! | ACTCAAACTTAGTCTTCAGG+GGG | - | chr3.3:61612600-61612619 | None:intergenic | 40.0% |
| ! | GTGTCTAGGGTGAAGATTTA+AGG | + | chr3.3:61610795-61610814 | MS.gene008064:intron | 40.0% |
| ! | GTTCGTTATGGGTTTTTGTC+CGG | - | chr3.3:61611533-61611552 | None:intergenic | 40.0% |
| ! | TCAGTTTTGCAGTTTGTACC+CGG | + | chr3.3:61613523-61613542 | MS.gene008064:intron | 40.0% |
| ! | TGATACGTGTCTTTTCAGAG+AGG | - | chr3.3:61612896-61612915 | None:intergenic | 40.0% |
| ! | TGTGCGCAACGAAACAATTT+TGG | - | chr3.3:61612424-61612443 | None:intergenic | 40.0% |
| ! | TTTTCACAGAGAGGTTCAGT+GGG | + | chr3.3:61613949-61613968 | MS.gene008064:CDS | 40.0% |
| !! | ACTTTTTCTTCATGGACAGG+AGG | - | chr3.3:61612933-61612952 | None:intergenic | 40.0% |
| !! | ATAAGGTTGGTTTGGTGTCT+AGG | + | chr3.3:61610781-61610800 | MS.gene008064:intron | 40.0% |
| !! | CATGATTTATGGTGGATGCA+CGG | + | chr3.3:61611411-61611430 | MS.gene008064:intron | 40.0% |
| !! | GAAACAATTTTGGAGAACCC+AGG | - | chr3.3:61612414-61612433 | None:intergenic | 40.0% |
| !! | TAAGGTTGGTTTGGTGTCTA+GGG | + | chr3.3:61610782-61610801 | MS.gene008064:intron | 40.0% |
| !! | TTGATGACGAGAAGCAAGAA+AGG | - | chr3.3:61611173-61611192 | None:intergenic | 40.0% |
| !! | TTTTGGAGGCAATGATTCCA+TGG | + | chr3.3:61612141-61612160 | MS.gene008064:CDS | 40.0% |
| AGTGCCTATTGTAGCTTGAG+GGG | - | chr3.3:61610435-61610454 | None:intergenic | 45.0% | |
| AGTTACAGCCATAGTGGTTG+GGG | + | chr3.3:61610119-61610138 | MS.gene008064:CDS | 45.0% | |
| CAGTTACAGCCATAGTGGTT+GGG | + | chr3.3:61610118-61610137 | MS.gene008064:CDS | 45.0% | |
| CTCTCTGTGAAAAGTCCACT+CGG | - | chr3.3:61613942-61613961 | None:intergenic | 45.0% | |
| GAACATTGAATCCTTCCGAG+TGG | + | chr3.3:61613924-61613943 | MS.gene008064:CDS | 45.0% | |
| GCTCATAGTGATTGCAGAGT+AGG | + | chr3.3:61611044-61611063 | MS.gene008064:intron | 45.0% | |
| GGAAAACTTGATGGAGGACT+TGG | - | chr3.3:61611308-61611327 | None:intergenic | 45.0% | |
| GGTATCCATTTAGCAGCTGA+GGG | + | chr3.3:61613767-61613786 | MS.gene008064:CDS | 45.0% | |
| GTAACCGTTAGCATCACACT+CGG | - | chr3.3:61610897-61610916 | None:intergenic | 45.0% | |
| GTATCCATTTAGCAGCTGAG+GGG | + | chr3.3:61613768-61613787 | MS.gene008064:CDS | 45.0% | |
| GTTTATCTATGCGTAGTGGC+CGG | + | chr3.3:61611511-61611530 | MS.gene008064:intron | 45.0% | |
| TCAGTTACAGCCATAGTGGT+TGG | + | chr3.3:61610117-61610136 | MS.gene008064:CDS | 45.0% | |
| TGCACAAATGGGGTTACAGA+CGG | + | chr3.3:61611981-61612000 | MS.gene008064:intron | 45.0% | |
| TGGTATCCATTTAGCAGCTG+AGG | + | chr3.3:61613766-61613785 | MS.gene008064:CDS | 45.0% | |
| TGTTACGAGGATACTACGGA+TGG | + | chr3.3:61611265-61611284 | MS.gene008064:CDS | 45.0% | |
| ! | CCTCCATCAAGTTTTCCCAA+AGG | + | chr3.3:61611311-61611330 | MS.gene008064:CDS | 45.0% |
| ! | CCTTTGGGAAAACTTGATGG+AGG | - | chr3.3:61611314-61611333 | None:intergenic | 45.0% |
| ! | CTAAAGGTTTTCCCACCAGA+AGG | - | chr3.3:61613443-61613462 | None:intergenic | 45.0% |
| ! | CTCAAACTTAGTCTTCAGGG+GGG | - | chr3.3:61612599-61612618 | None:intergenic | 45.0% |
| ! | CTTTTCACAGAGAGGTTCAG+TGG | + | chr3.3:61613948-61613967 | MS.gene008064:CDS | 45.0% |
| ! | GAAGTGCCTATTGTAGCTTG+AGG | - | chr3.3:61610437-61610456 | None:intergenic | 45.0% |
| ! | GTCCATGAAGAAAAAGTGCG+CGG | + | chr3.3:61612936-61612955 | MS.gene008064:CDS | 45.0% |
| ! | TACCCGGAAAGACGGTTTTA+AGG | + | chr3.3:61613539-61613558 | MS.gene008064:intron | 45.0% |
| ! | TCAAACTTAGTCTTCAGGGG+GGG | - | chr3.3:61612598-61612617 | None:intergenic | 45.0% |
| !!! | CGCACTTTTTCTTCATGGAC+AGG | - | chr3.3:61612936-61612955 | None:intergenic | 45.0% |
| !!! | TTCCGCGCACTTTTTCTTCA+TGG | - | chr3.3:61612941-61612960 | None:intergenic | 45.0% |
| !!! | ATTTTATGAATTTTTTTTTT+TGG | - | chr3.3:61612536-61612555 | None:intergenic | 5.0% |
| AACAGGTGCCAATGTAGAGC+TGG | - | chr3.3:61611654-61611673 | None:intergenic | 50.0% | |
| AGCTGAGGGGAGCAAAATTG+TGG | + | chr3.3:61613781-61613800 | MS.gene008064:CDS | 50.0% | |
| AGGTCCCCTCAAGCTACAAT+AGG | + | chr3.3:61610428-61610447 | MS.gene008064:intron | 50.0% | |
| ATAGACTTCCAGTGGAGGCA+TGG | - | chr3.3:61613848-61613867 | None:intergenic | 50.0% | |
| CACTCCGAGTGTGATGCTAA+CGG | + | chr3.3:61610890-61610909 | MS.gene008064:intron | 50.0% | |
| CAGCTCAGTTACAGCCATAG+TGG | + | chr3.3:61610113-61610132 | MS.gene008064:CDS | 50.0% | |
| CAGTGTGCATAGACTTCCAG+TGG | - | chr3.3:61613856-61613875 | None:intergenic | 50.0% | |
| CTCTTAGGAGAATGCGAGGA+AGG | - | chr3.3:61611022-61611041 | None:intergenic | 50.0% | |
| CTGTGAAAAGTCCACTCGGA+AGG | - | chr3.3:61613938-61613957 | None:intergenic | 50.0% | |
| GAAAGGAACCCCAACCACTA+TGG | - | chr3.3:61610130-61610149 | None:intergenic | 50.0% | |
| GCAGTTTGTACCCGGAAAGA+CGG | + | chr3.3:61613531-61613550 | MS.gene008064:intron | 50.0% | |
| GCATCTCTTAGGAGAATGCG+AGG | - | chr3.3:61611026-61611045 | None:intergenic | 50.0% | |
| GCTACAATAGGCACTTCCCA+AGG | + | chr3.3:61610440-61610459 | MS.gene008064:intron | 50.0% | |
| GCTGTAACTGAGCTGAACGA+TGG | - | chr3.3:61610108-61610127 | None:intergenic | 50.0% | |
| TACGCTACCGGAGGAAGATT+AGG | - | chr3.3:61611561-61611580 | None:intergenic | 50.0% | |
| TGGAGTGATAGGAAGACCGA+GGG | + | chr3.3:61610820-61610839 | MS.gene008064:intron | 50.0% | |
| TGTGCATAGACTTCCAGTGG+AGG | - | chr3.3:61613853-61613872 | None:intergenic | 50.0% | |
| TTGGAGTGATAGGAAGACCG+AGG | + | chr3.3:61610819-61610838 | MS.gene008064:intron | 50.0% | |
| ! | AAAAAGTGCGCGGAAACACC+AGG | + | chr3.3:61612946-61612965 | MS.gene008064:CDS | 50.0% |
| ! | GTGTCTTTTCAGAGAGGCTC+TGG | - | chr3.3:61612890-61612909 | None:intergenic | 50.0% |
| ! | GTTTTCCCACCAGAAGGAGT+TGG | - | chr3.3:61613437-61613456 | None:intergenic | 50.0% |
| !! | CGAGTGGACTTTTCACAGAG+AGG | + | chr3.3:61613940-61613959 | MS.gene008064:CDS | 50.0% |
| ACCAGATGAGTGAGGACCCA+TGG | - | chr3.3:61612161-61612180 | None:intergenic | 55.0% | |
| ATTGGAAGCCATGCCTCCAC+TGG | + | chr3.3:61613837-61613856 | MS.gene008064:CDS | 55.0% | |
| GGTCCTCACTCATCTGGTCT+AGG | + | chr3.3:61612163-61612182 | MS.gene008064:CDS | 55.0% | |
| TCCATGGGTCCTCACTCATC+TGG | + | chr3.3:61612157-61612176 | MS.gene008064:CDS | 55.0% | |
| TGCTCCCCTCAGCTGCTAAA+TGG | - | chr3.3:61613775-61613794 | None:intergenic | 55.0% | |
| GGGCCTAGACCAGATGAGTG+AGG | - | chr3.3:61612169-61612188 | None:intergenic | 60.0% | |
| TGGAGTGGGGATCGAACCCT+CGG | - | chr3.3:61610839-61610858 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 61610062 | 61613976 | 61610062 | ID=MS.gene008064 |
| chr3.3 | mRNA | 61610062 | 61613976 | 61610062 | ID=MS.gene008064.t1;Parent=MS.gene008064 |
| chr3.3 | exon | 61610062 | 61610172 | 61610062 | ID=MS.gene008064.t1.exon1;Parent=MS.gene008064.t1 |
| chr3.3 | CDS | 61610062 | 61610172 | 61610062 | ID=cds.MS.gene008064.t1;Parent=MS.gene008064.t1 |
| chr3.3 | exon | 61611255 | 61611332 | 61611255 | ID=MS.gene008064.t1.exon2;Parent=MS.gene008064.t1 |
| chr3.3 | CDS | 61611255 | 61611332 | 61611255 | ID=cds.MS.gene008064.t1;Parent=MS.gene008064.t1 |
| chr3.3 | exon | 61612106 | 61612246 | 61612106 | ID=MS.gene008064.t1.exon3;Parent=MS.gene008064.t1 |
| chr3.3 | CDS | 61612106 | 61612246 | 61612106 | ID=cds.MS.gene008064.t1;Parent=MS.gene008064.t1 |
| chr3.3 | exon | 61612891 | 61612967 | 61612891 | ID=MS.gene008064.t1.exon4;Parent=MS.gene008064.t1 |
| chr3.3 | CDS | 61612891 | 61612967 | 61612891 | ID=cds.MS.gene008064.t1;Parent=MS.gene008064.t1 |
| chr3.3 | exon | 61613073 | 61613222 | 61613073 | ID=MS.gene008064.t1.exon5;Parent=MS.gene008064.t1 |
| chr3.3 | CDS | 61613073 | 61613222 | 61613073 | ID=cds.MS.gene008064.t1;Parent=MS.gene008064.t1 |
| chr3.3 | exon | 61613763 | 61613976 | 61613763 | ID=MS.gene008064.t1.exon6;Parent=MS.gene008064.t1 |
| chr3.3 | CDS | 61613763 | 61613976 | 61613763 | ID=cds.MS.gene008064.t1;Parent=MS.gene008064.t1 |
| Gene Sequence |
| Protein sequence |
