Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003413.t1 | XP_003607270.1 | 97.9 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 2.20E-93 | 351.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003413.t1 | Q9Y3E5 | 55.3 | 132 | 55 | 2 | 62 | 189 | 47 | 178 | 1.9e-29 | 130.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003413.t1 | G7JPK0 | 97.9 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 1.6e-93 | 351.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43071 | MS.gene003413 | PPI |
| MS.gene042719 | MS.gene003413 | PPI |
| MS.gene003413 | MS.gene91826 | PPI |
| MS.gene003413 | MS.gene78764 | PPI |
| MS.gene003413 | MS.gene053952 | PPI |
| MS.gene073078 | MS.gene003413 | PPI |
| MS.gene003413 | MS.gene35379 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003413.t1 | MTR_4g075280 | 97.895 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 2.78e-136 | 379 |
| MS.gene003413.t1 | MTR_3g109700 | 45.865 | 133 | 68 | 3 | 60 | 190 | 63 | 193 | 8.03e-34 | 119 |
| MS.gene003413.t1 | MTR_3g109700 | 44.444 | 108 | 57 | 2 | 57 | 163 | 60 | 165 | 8.83e-26 | 97.8 |
| MS.gene003413.t1 | MTR_3g109700 | 44.860 | 107 | 56 | 2 | 57 | 162 | 60 | 164 | 2.37e-25 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003413.t1 | AT5G16870 | 69.474 | 190 | 37 | 4 | 1 | 190 | 1 | 169 | 4.99e-86 | 251 |
| MS.gene003413.t1 | AT3G03010 | 69.318 | 176 | 41 | 2 | 17 | 190 | 15 | 179 | 5.75e-80 | 236 |
| MS.gene003413.t1 | AT3G03010 | 69.318 | 176 | 41 | 2 | 17 | 190 | 15 | 179 | 5.75e-80 | 236 |
| MS.gene003413.t1 | AT3G03010 | 69.318 | 176 | 41 | 2 | 17 | 190 | 15 | 179 | 5.75e-80 | 236 |
| MS.gene003413.t1 | AT3G03010 | 61.719 | 128 | 36 | 2 | 17 | 142 | 15 | 131 | 1.68e-45 | 147 |
| MS.gene003413.t1 | AT3G03010 | 61.719 | 128 | 36 | 2 | 17 | 142 | 15 | 131 | 1.68e-45 | 147 |
| MS.gene003413.t1 | AT4G32900 | 48.718 | 117 | 59 | 1 | 75 | 190 | 77 | 193 | 6.02e-34 | 119 |
| MS.gene003413.t1 | AT4G32900 | 45.556 | 90 | 49 | 0 | 75 | 164 | 77 | 166 | 2.06e-24 | 94.4 |
| MS.gene003413.t1 | AT4G32900 | 45.556 | 90 | 49 | 0 | 75 | 164 | 77 | 166 | 2.06e-24 | 94.4 |
| MS.gene003413.t1 | AT4G32900 | 46.875 | 64 | 34 | 0 | 75 | 138 | 77 | 140 | 4.23e-16 | 72.0 |
Find 30 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAGTTGGTCTTTGATTT+TGG | 0.042547 | 4.1:-28538241 | None:intergenic |
| TGTTAGAAATGATCTTAAAA+TGG | 0.178309 | 4.1:+28538397 | MS.gene003413:CDS |
| CTTGCTTTGGGTTACTTCAT+TGG | 0.226259 | 4.1:+28538111 | MS.gene003413:CDS |
| GTCATGGTTGAGTGCAATTT+TGG | 0.265900 | 4.1:+28538074 | MS.gene003413:CDS |
| TGGTGCTGGTTATCTTGCTT+TGG | 0.338108 | 4.1:+28538098 | MS.gene003413:CDS |
| GGTGCTGGTTATCTTGCTTT+GGG | 0.344764 | 4.1:+28538099 | MS.gene003413:CDS |
| AACATTGGGTCTCTACAAAA+AGG | 0.347125 | 4.1:+28538977 | MS.gene003413:CDS |
| CATTACCTATTTAAAGCCTT+TGG | 0.351201 | 4.1:-28539014 | None:intergenic |
| GAGAATTGCCATCACCGTTC+TGG | 0.354128 | 4.1:-28541151 | None:intergenic |
| GAGCTCCAAAGGCTTTAAAT+AGG | 0.364463 | 4.1:+28539009 | MS.gene003413:CDS |
| GTTAGAAATGATCTTAAAAT+GGG | 0.382687 | 4.1:+28538398 | MS.gene003413:CDS |
| ACCTCATCTACCACTTCAAC+AGG | 0.461920 | 4.1:-28541289 | None:intergenic |
| TATTTAAAGCCTTTGGAGCT+CGG | 0.471485 | 4.1:-28539007 | None:intergenic |
| AATGATCTTAAAATGGGTAA+AGG | 0.501457 | 4.1:+28538404 | MS.gene003413:CDS |
| AGAACGGTGATGGCAATTCT+CGG | 0.504068 | 4.1:+28541153 | MS.gene003413:CDS |
| GAAAGATTGCAGCTCAATGC+AGG | 0.516623 | 4.1:+28538426 | MS.gene003413:CDS |
| GGAGATGTCTGCACAGCCTA+AGG | 0.521064 | 4.1:+28539120 | MS.gene003413:CDS |
| TGAAAGTGAAGAAGATATGC+TGG | 0.522958 | 4.1:+28539156 | MS.gene003413:CDS |
| TCTAGATTCCAGAACGGTGA+TGG | 0.534748 | 4.1:+28541143 | MS.gene003413:intron |
| ACTCATATCACAATTGATGC+TGG | 0.549551 | 4.1:+28540560 | MS.gene003413:CDS |
| GGTTCTTTACCGAGCTCCAA+AGG | 0.550602 | 4.1:+28538998 | MS.gene003413:CDS |
| GCATCAATTGTGATATGAGT+AGG | 0.570579 | 4.1:-28540557 | None:intergenic |
| CAAGCTGTTCAACCTCAAGT+TGG | 0.585211 | 4.1:-28538254 | None:intergenic |
| ACCTGTTGAAGTGGTAGATG+AGG | 0.590585 | 4.1:+28541288 | MS.gene003413:CDS |
| GAAGTGGTAGATGAGGTAAC+TGG | 0.597036 | 4.1:+28541295 | MS.gene003413:CDS |
| ATGTGCAGGACCTGTTGAAG+TGG | 0.631821 | 4.1:+28541279 | MS.gene003413:intron |
| GTTTCTTCTAGATTCCAGAA+CGG | 0.652178 | 4.1:+28541137 | MS.gene003413:intron |
| TGATTGAAATGGAAATGTCA+TGG | 0.672695 | 4.1:+28538058 | None:intergenic |
| CAAAATCAAAGACCAACTTG+AGG | 0.704651 | 4.1:+28538242 | MS.gene003413:CDS |
| GTGGTAGATGAGGTAACTGG+TGG | 0.714457 | 4.1:+28541298 | MS.gene003413:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATCCTTTTAATTTATT+AGG | + | chr4.1:28539808-28539827 | MS.gene003413:intron | 10.0% |
| !! | ATCCAGAAAAAAAATATAAA+CGG | + | chr4.1:28538912-28538931 | MS.gene003413:intron | 15.0% |
| !! | ATTAATCAAATGATATCATT+AGG | + | chr4.1:28539839-28539858 | MS.gene003413:intron | 15.0% |
| !! | TTATTATTCTAATAACACTA+TGG | + | chr4.1:28540070-28540089 | MS.gene003413:intron | 15.0% |
| !! | TTGACAAGAAAAAATATAAA+TGG | - | chr4.1:28541203-28541222 | None:intergenic | 15.0% |
| !!! | AATTACTAGCTTTATTTTAA+TGG | + | chr4.1:28538336-28538355 | MS.gene003413:intron | 15.0% |
| !!! | AGGATATTTTTCTTTTAATT+TGG | - | chr4.1:28539797-28539816 | None:intergenic | 15.0% |
| !!! | ATTACTAGCTTTATTTTAAT+GGG | + | chr4.1:28538337-28538356 | MS.gene003413:intron | 15.0% |
| !!! | TAAGTATTGTTTGATTTTTA+GGG | + | chr4.1:28539188-28539207 | MS.gene003413:intron | 15.0% |
| !!! | TTTTTTTTAATGCTACTATA+AGG | - | chr4.1:28540701-28540720 | None:intergenic | 15.0% |
| !! | AACTTATTTGATATATTGAC+TGG | + | chr4.1:28540323-28540342 | MS.gene003413:intron | 20.0% |
| !! | AATCAATTAACAAGAAGATA+AGG | - | chr4.1:28540624-28540643 | None:intergenic | 20.0% |
| !! | ATCAATTAACAAGAAGATAA+GGG | - | chr4.1:28540623-28540642 | None:intergenic | 20.0% |
| !! | CTAAGCAATAATAATCTATT+TGG | - | chr4.1:28538768-28538787 | None:intergenic | 20.0% |
| !! | GTTAGAAATGATCTTAAAAT+GGG | + | chr4.1:28538398-28538417 | MS.gene003413:CDS | 20.0% |
| !! | TCAAATATGTCAATCTAATT+AGG | + | chr4.1:28538711-28538730 | MS.gene003413:intron | 20.0% |
| !! | TGTTAGAAATGATCTTAAAA+TGG | + | chr4.1:28538397-28538416 | MS.gene003413:CDS | 20.0% |
| !! | TGTTTAATCAATGAAAGTAA+AGG | + | chr4.1:28539483-28539502 | MS.gene003413:intron | 20.0% |
| !! | TTATATTCAAACTTGAAACT+TGG | + | chr4.1:28539572-28539591 | MS.gene003413:intron | 20.0% |
| !! | TTTCAGCCTAATAAATTAAA+AGG | - | chr4.1:28539817-28539836 | None:intergenic | 20.0% |
| !!! | AAAAAAGTATAGCATAAACA+AGG | + | chr4.1:28540222-28540241 | MS.gene003413:intron | 20.0% |
| !!! | AACGTCTTTTATTATTGTAA+AGG | + | chr4.1:28540124-28540143 | MS.gene003413:intron | 20.0% |
| !!! | GTAAGTATTGTTTGATTTTT+AGG | + | chr4.1:28539187-28539206 | MS.gene003413:intron | 20.0% |
| !!! | TATATTTTTTCTTGTCAACT+TGG | + | chr4.1:28541205-28541224 | MS.gene003413:intron | 20.0% |
| !!! | TTTACTTTCATTGATTAAAC+AGG | - | chr4.1:28539484-28539503 | None:intergenic | 20.0% |
| !!! | TTTATTTTCTATTTTTCTCC+TGG | - | chr4.1:28539385-28539404 | None:intergenic | 20.0% |
| ! | AAACTTCAATGTATAAGATG+AGG | - | chr4.1:28540875-28540894 | None:intergenic | 25.0% |
| ! | AATGATCTTAAAATGGGTAA+AGG | + | chr4.1:28538404-28538423 | MS.gene003413:CDS | 25.0% |
| ! | AATGTATAAGATGAGGATAA+TGG | - | chr4.1:28540868-28540887 | None:intergenic | 25.0% |
| ! | ACAACAAGTATCTACAAAAA+AGG | - | chr4.1:28538380-28538399 | None:intergenic | 25.0% |
| ! | ACACCAAATAAACACTATTA+TGG | + | chr4.1:28539312-28539331 | MS.gene003413:intron | 25.0% |
| ! | ATAAATGGTCATTCTATTAG+AGG | - | chr4.1:28541188-28541207 | None:intergenic | 25.0% |
| ! | ATATCATTAGGATTATGTCT+AGG | + | chr4.1:28539851-28539870 | MS.gene003413:intron | 25.0% |
| ! | ATGCAAATTGTCATGTATAT+TGG | + | chr4.1:28540743-28540762 | MS.gene003413:intron | 25.0% |
| ! | ATTTCAGATCTAATTGTACA+TGG | - | chr4.1:28540800-28540819 | None:intergenic | 25.0% |
| ! | CAACCATAATAGTGTTTATT+TGG | - | chr4.1:28539318-28539337 | None:intergenic | 25.0% |
| ! | CAACGAAAAAACAAAAGAAA+AGG | - | chr4.1:28541036-28541055 | None:intergenic | 25.0% |
| ! | CTTTAAATAGGTAATGTCAT+TGG | + | chr4.1:28539021-28539040 | MS.gene003413:intron | 25.0% |
| ! | GCAATAATAATCTATTTGGA+AGG | - | chr4.1:28538764-28538783 | None:intergenic | 25.0% |
| ! | GCTTAAATATCTCCAAAATT+AGG | + | chr4.1:28540404-28540423 | MS.gene003413:intron | 25.0% |
| ! | TTCTGGATTAAAAACAAAAC+AGG | - | chr4.1:28538900-28538919 | None:intergenic | 25.0% |
| ! | TTTGTATCTGTATGATATGA+AGG | + | chr4.1:28541067-28541086 | MS.gene003413:intron | 25.0% |
| !! | AACATGAAAGAACCTAATTT+TGG | - | chr4.1:28540419-28540438 | None:intergenic | 25.0% |
| !! | AATGAGTTGAAAACAGTTTA+TGG | + | chr4.1:28538619-28538638 | MS.gene003413:intron | 25.0% |
| !! | AGGCAAAAAATAGTAGATTT+TGG | + | chr4.1:28539426-28539445 | MS.gene003413:intron | 25.0% |
| !! | AGGGATGTATATTTCATTTT+AGG | - | chr4.1:28540845-28540864 | None:intergenic | 25.0% |
| !! | GGATGTATATTTCATTTTAG+GGG | - | chr4.1:28540843-28540862 | None:intergenic | 25.0% |
| !! | GGGATGTATATTTCATTTTA+GGG | - | chr4.1:28540844-28540863 | None:intergenic | 25.0% |
| !! | GGTTTAACAGTTAGATATTT+TGG | + | chr4.1:28540160-28540179 | MS.gene003413:intron | 25.0% |
| !! | TACAAAAGCTATCTTTAGAA+AGG | - | chr4.1:28540485-28540504 | None:intergenic | 25.0% |
| !!! | GACCGTTTATATTTTTTTTC+TGG | - | chr4.1:28538917-28538936 | None:intergenic | 25.0% |
| !!! | TATTCTCGAAGATTTTAAGA+TGG | + | chr4.1:28538281-28538300 | MS.gene003413:CDS | 25.0% |
| AAAATAGTCCAACCTATTAG+AGG | - | chr4.1:28540280-28540299 | None:intergenic | 30.0% | |
| AAATTGTCATGTATATTGGC+TGG | + | chr4.1:28540747-28540766 | MS.gene003413:intron | 30.0% | |
| AAGTAAAGGATGACTAGAAA+AGG | + | chr4.1:28539497-28539516 | MS.gene003413:intron | 30.0% | |
| ACTAACACTGCAATCATATT+AGG | + | chr4.1:28539614-28539633 | MS.gene003413:intron | 30.0% | |
| AGGTAAAAGTTCCAATTATG+TGG | - | chr4.1:28540662-28540681 | None:intergenic | 30.0% | |
| AGTAAAGGATGACTAGAAAA+GGG | + | chr4.1:28539498-28539517 | MS.gene003413:intron | 30.0% | |
| ATACGTAGCAGTGTATAATT+TGG | + | chr4.1:28539699-28539718 | MS.gene003413:intron | 30.0% | |
| ATACTTGTAGAAACTGTCTA+AGG | + | chr4.1:28539458-28539477 | MS.gene003413:intron | 30.0% | |
| CACAGTTATAGACAATACAA+AGG | - | chr4.1:28540961-28540980 | None:intergenic | 30.0% | |
| CTATATGCAATGAAAAGCAA+GGG | + | chr4.1:28539949-28539968 | MS.gene003413:intron | 30.0% | |
| CTGTTTCAAAAGAAATGTTG+TGG | + | chr4.1:28539645-28539664 | MS.gene003413:intron | 30.0% | |
| TACGTAGCAGTGTATAATTT+GGG | + | chr4.1:28539700-28539719 | MS.gene003413:intron | 30.0% | |
| TGTAATGTTCTCCACATAAT+TGG | + | chr4.1:28540648-28540667 | MS.gene003413:intron | 30.0% | |
| TTATTGTAAAGGAACTCTTG+TGG | + | chr4.1:28540135-28540154 | MS.gene003413:intron | 30.0% | |
| ! | AATTGTCATGTATATTGGCT+GGG | + | chr4.1:28540748-28540767 | MS.gene003413:intron | 30.0% |
| ! | ATCCTTTTGACATTTGAACT+AGG | + | chr4.1:28539406-28539425 | MS.gene003413:intron | 30.0% |
| ! | ATTTTGTAGTCATGCAACAT+TGG | + | chr4.1:28538962-28538981 | MS.gene003413:intron | 30.0% |
| ! | CATTACCTATTTAAAGCCTT+TGG | - | chr4.1:28539017-28539036 | None:intergenic | 30.0% |
| ! | CTCATTTTCATTACTTATCC+AGG | - | chr4.1:28538605-28538624 | None:intergenic | 30.0% |
| ! | GGTGTTAATTTGATCTTGTT+TGG | + | chr4.1:28538464-28538483 | MS.gene003413:intron | 30.0% |
| ! | TTTTGTAGTCATGCAACATT+GGG | + | chr4.1:28538963-28538982 | MS.gene003413:intron | 30.0% |
| !! | AACACTATTATGGTTGCTTT+TGG | + | chr4.1:28539322-28539341 | MS.gene003413:intron | 30.0% |
| !! | ATACTGTCTTTTGCTGTATT+AGG | + | chr4.1:28540511-28540530 | MS.gene003413:intron | 30.0% |
| !! | TATAAGATGAGGATAATGGA+GGG | - | chr4.1:28540864-28540883 | None:intergenic | 30.0% |
| !! | TCAATTTTGACAACAACCTT+AGG | - | chr4.1:28539139-28539158 | None:intergenic | 30.0% |
| !! | TCTTTTGCTGTATTAGGAAA+GGG | + | chr4.1:28540517-28540536 | MS.gene003413:intron | 30.0% |
| !! | TTGGGCTTTAAACAATGATT+GGG | + | chr4.1:28539718-28539737 | MS.gene003413:intron | 30.0% |
| !! | TTTGGGCTTTAAACAATGAT+TGG | + | chr4.1:28539717-28539736 | MS.gene003413:intron | 30.0% |
| !!! | TAGATATTTTGGTAATCTGC+CGG | + | chr4.1:28540171-28540190 | MS.gene003413:intron | 30.0% |
| !!! | TCAAGTTGGTCTTTGATTTT+GGG | - | chr4.1:28538243-28538262 | None:intergenic | 30.0% |
| AACATTGGGTCTCTACAAAA+AGG | + | chr4.1:28538977-28538996 | MS.gene003413:CDS | 35.0% | |
| AAGGCAGTAAAATAACACAC+AGG | - | chr4.1:28540682-28540701 | None:intergenic | 35.0% | |
| ACATATTTGAGCTTACCTAC+AGG | - | chr4.1:28538701-28538720 | None:intergenic | 35.0% | |
| ACTCATATCACAATTGATGC+TGG | + | chr4.1:28540560-28540579 | MS.gene003413:CDS | 35.0% | |
| ATACTGTCAGAACCTCTAAT+AGG | + | chr4.1:28540265-28540284 | MS.gene003413:intron | 35.0% | |
| ATTTAAGCGAACTATGGAAG+AGG | - | chr4.1:28540392-28540411 | None:intergenic | 35.0% | |
| CAAAATCAAAGACCAACTTG+AGG | + | chr4.1:28538242-28538261 | MS.gene003413:CDS | 35.0% | |
| CAATGCAAGACATGAAACTT+AGG | + | chr4.1:28539535-28539554 | MS.gene003413:intron | 35.0% | |
| CTTTAAACAATGATTGGGCA+GGG | + | chr4.1:28539723-28539742 | MS.gene003413:intron | 35.0% | |
| GCATCAATTGTGATATGAGT+AGG | - | chr4.1:28540560-28540579 | None:intergenic | 35.0% | |
| GCTATATGCAATGAAAAGCA+AGG | + | chr4.1:28539948-28539967 | MS.gene003413:intron | 35.0% | |
| GGAGATATTTAAGCGAACTA+TGG | - | chr4.1:28540398-28540417 | None:intergenic | 35.0% | |
| GTTTCTTCTAGATTCCAGAA+CGG | + | chr4.1:28541137-28541156 | MS.gene003413:intron | 35.0% | |
| TATTTGTTTGCGAGAGCTTA+TGG | - | chr4.1:28538663-28538682 | None:intergenic | 35.0% | |
| TGAAAGTGAAGAAGATATGC+TGG | + | chr4.1:28539156-28539175 | MS.gene003413:CDS | 35.0% | |
| TGCAGGTATGTAATCTTTGT+TGG | + | chr4.1:28538443-28538462 | MS.gene003413:intron | 35.0% | |
| TGCCTAGTTCAAATGTCAAA+AGG | - | chr4.1:28539411-28539430 | None:intergenic | 35.0% | |
| TGTTGTTCTATAAGCTATCC+TGG | + | chr4.1:28538584-28538603 | MS.gene003413:intron | 35.0% | |
| TTAACATGATGTTCATGTGC+AGG | + | chr4.1:28541265-28541284 | MS.gene003413:intron | 35.0% | |
| TTGTTTGGATAAGCACTCAA+TGG | + | chr4.1:28538479-28538498 | MS.gene003413:intron | 35.0% | |
| ! | ACAAGAACAGTTCGTCTTTT+AGG | - | chr4.1:28540008-28540027 | None:intergenic | 35.0% |
| ! | CAAGAACAGTTCGTCTTTTA+GGG | - | chr4.1:28540007-28540026 | None:intergenic | 35.0% |
| ! | GTATAAGATGAGGATAATGG+AGG | - | chr4.1:28540865-28540884 | None:intergenic | 35.0% |
| ! | TTTTCTTCAGAAAGCAAGCA+TGG | - | chr4.1:28540921-28540940 | None:intergenic | 35.0% |
| !! | GTCTTTTGCTGTATTAGGAA+AGG | + | chr4.1:28540516-28540535 | MS.gene003413:intron | 35.0% |
| !! | GTTTTTCAATGTCAATGTGC+AGG | + | chr4.1:28539095-28539114 | MS.gene003413:intron | 35.0% |
| !! | TATTTAAAGCCTTTGGAGCT+CGG | - | chr4.1:28539010-28539029 | None:intergenic | 35.0% |
| !! | TGGATAGGCATTTTTAAGCA+TGG | - | chr4.1:28540901-28540920 | None:intergenic | 35.0% |
| !!! | ACTATTATGGTTGCTTTTGG+TGG | + | chr4.1:28539325-28539344 | MS.gene003413:intron | 35.0% |
| !!! | AGATATTTTGGTAATCTGCC+GGG | + | chr4.1:28540172-28540191 | MS.gene003413:intron | 35.0% |
| !!! | CTATTATGGTTGCTTTTGGT+GGG | + | chr4.1:28539326-28539345 | MS.gene003413:intron | 35.0% |
| !!! | CTCAAGTTGGTCTTTGATTT+TGG | - | chr4.1:28538244-28538263 | None:intergenic | 35.0% |
| AATGAAAAGCAAGGGAGAGT+AGG | + | chr4.1:28539957-28539976 | MS.gene003413:intron | 40.0% | |
| CATTAGGATTATGTCTAGGC+TGG | + | chr4.1:28539855-28539874 | MS.gene003413:intron | 40.0% | |
| GAACATAGTTAACGTTGCAC+AGG | - | chr4.1:28539218-28539237 | None:intergenic | 40.0% | |
| GATTGCACCAAGTGAGTATT+TGG | + | chr4.1:28540592-28540611 | MS.gene003413:intron | 40.0% | |
| GGTAGTTCCAAATACTCACT+TGG | - | chr4.1:28540602-28540621 | None:intergenic | 40.0% | |
| GTGGCTGATTAATCATTGTG+AGG | + | chr4.1:28539664-28539683 | MS.gene003413:intron | 40.0% | |
| TAGCCTAGTGATTTACATCC+CGG | - | chr4.1:28540193-28540212 | None:intergenic | 40.0% | |
| TGCTTAGATTGCGACATTCT+AGG | + | chr4.1:28538781-28538800 | MS.gene003413:intron | 40.0% | |
| TGTAAAGGAACTCTTGTGGA+AGG | + | chr4.1:28540139-28540158 | MS.gene003413:intron | 40.0% | |
| TGTCAGAACCTCTAATAGGT+TGG | + | chr4.1:28540269-28540288 | MS.gene003413:intron | 40.0% | |
| TTCAATGTCAATGTGCAGGT+GGG | + | chr4.1:28539099-28539118 | MS.gene003413:intron | 40.0% | |
| TTCAGAAAGCAAGCATGGAT+AGG | - | chr4.1:28540916-28540935 | None:intergenic | 40.0% | |
| TTTCAATGTCAATGTGCAGG+TGG | + | chr4.1:28539098-28539117 | MS.gene003413:intron | 40.0% | |
| ! | ATGTCATTGGTTGAGCTTGT+TGG | + | chr4.1:28539034-28539053 | MS.gene003413:intron | 40.0% |
| ! | CTTGCTTTGGGTTACTTCAT+TGG | + | chr4.1:28538111-28538130 | MS.gene003413:CDS | 40.0% |
| ! | GCTTTAAACAATGATTGGGC+AGG | + | chr4.1:28539722-28539741 | MS.gene003413:intron | 40.0% |
| ! | GTCATGGTTGAGTGCAATTT+TGG | + | chr4.1:28538074-28538093 | MS.gene003413:CDS | 40.0% |
| !! | CATACTTGCTTGCTGTACAT+TGG | + | chr4.1:28539267-28539286 | MS.gene003413:intron | 40.0% |
| !! | GAGCTCCAAAGGCTTTAAAT+AGG | + | chr4.1:28539009-28539028 | MS.gene003413:CDS | 40.0% |
| !! | TGGTTGAGTGCAATTTTGGT+TGG | + | chr4.1:28538078-28538097 | MS.gene003413:CDS | 40.0% |
| AAACAATGATTGGGCAGGGA+GGG | + | chr4.1:28539727-28539746 | MS.gene003413:intron | 45.0% | |
| ACCTCATCTACCACTTCAAC+AGG | - | chr4.1:28541292-28541311 | None:intergenic | 45.0% | |
| ACCTGTTGAAGTGGTAGATG+AGG | + | chr4.1:28541288-28541307 | MS.gene003413:CDS | 45.0% | |
| ACTAGAGAAGTTCAGCAACC+AGG | + | chr4.1:28539364-28539383 | MS.gene003413:intron | 45.0% | |
| CAAGCTGTTCAACCTCAAGT+TGG | - | chr4.1:28538257-28538276 | None:intergenic | 45.0% | |
| GAAAGATTGCAGCTCAATGC+AGG | + | chr4.1:28538426-28538445 | MS.gene003413:CDS | 45.0% | |
| GAAGTGGTAGATGAGGTAAC+TGG | + | chr4.1:28541295-28541314 | MS.gene003413:CDS | 45.0% | |
| TAAACAATGATTGGGCAGGG+AGG | + | chr4.1:28539726-28539745 | MS.gene003413:intron | 45.0% | |
| TCGTAAGTGCTTATGCCTGT+AGG | + | chr4.1:28538683-28538702 | MS.gene003413:intron | 45.0% | |
| TCTAGATTCCAGAACGGTGA+TGG | + | chr4.1:28541143-28541162 | MS.gene003413:intron | 45.0% | |
| TGCAGTGTTAGTGAGCATAG+AGG | - | chr4.1:28539606-28539625 | None:intergenic | 45.0% | |
| ! | AGAACGGTGATGGCAATTCT+CGG | + | chr4.1:28541153-28541172 | MS.gene003413:CDS | 45.0% |
| !! | GAACAGTTCGTCTTTTAGGG+TGG | - | chr4.1:28540004-28540023 | None:intergenic | 45.0% |
| !! | GGTGCTGGTTATCTTGCTTT+GGG | + | chr4.1:28538099-28538118 | MS.gene003413:CDS | 45.0% |
| !! | TGGTGCTGGTTATCTTGCTT+TGG | + | chr4.1:28538098-28538117 | MS.gene003413:CDS | 45.0% |
| !!! | AGTGCAATTTTGGTTGGTGC+TGG | + | chr4.1:28538084-28538103 | MS.gene003413:CDS | 45.0% |
| !!! | AAATAAAATTTAAGATAAAA+TGG | - | chr4.1:28540448-28540467 | None:intergenic | 5.0% |
| AACAATGATTGGGCAGGGAG+GGG | + | chr4.1:28539728-28539747 | MS.gene003413:intron | 50.0% | |
| AGATCCCTCATTCGCGTGAA+GGG | + | chr4.1:28538851-28538870 | MS.gene003413:intron | 50.0% | |
| ATGTGCAGGACCTGTTGAAG+TGG | + | chr4.1:28541279-28541298 | MS.gene003413:intron | 50.0% | |
| CTGCCGGGATGTAAATCACT+AGG | + | chr4.1:28540187-28540206 | MS.gene003413:intron | 50.0% | |
| GAGAATTGCCATCACCGTTC+TGG | - | chr4.1:28541154-28541173 | None:intergenic | 50.0% | |
| GGTTCTTTACCGAGCTCCAA+AGG | + | chr4.1:28538998-28539017 | MS.gene003413:CDS | 50.0% | |
| GTGGTAGATGAGGTAACTGG+TGG | + | chr4.1:28541298-28541317 | MS.gene003413:CDS | 50.0% | |
| TTCACCCTTCACGCGAATGA+GGG | - | chr4.1:28538858-28538877 | None:intergenic | 50.0% | |
| GAGATCCCTCATTCGCGTGA+AGG | + | chr4.1:28538850-28538869 | MS.gene003413:intron | 55.0% | |
| GGAGATGTCTGCACAGCCTA+AGG | + | chr4.1:28539120-28539139 | MS.gene003413:CDS | 55.0% | |
| GTTCACCCTTCACGCGAATG+AGG | - | chr4.1:28538859-28538878 | None:intergenic | 55.0% | |
| GATTGGGCAGGGAGGGGAAG+TGG | + | chr4.1:28539734-28539753 | MS.gene003413:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 28538066 | 28541336 | 28538066 | ID=MS.gene003413 |
| chr4.1 | mRNA | 28538066 | 28541336 | 28538066 | ID=MS.gene003413.t1;Parent=MS.gene003413 |
| chr4.1 | exon | 28538066 | 28538302 | 28538066 | ID=MS.gene003413.t1.exon1;Parent=MS.gene003413.t1 |
| chr4.1 | CDS | 28538066 | 28538302 | 28538066 | ID=cds.MS.gene003413.t1;Parent=MS.gene003413.t1 |
| chr4.1 | exon | 28538389 | 28538447 | 28538389 | ID=MS.gene003413.t1.exon2;Parent=MS.gene003413.t1 |
| chr4.1 | CDS | 28538389 | 28538447 | 28538389 | ID=cds.MS.gene003413.t1;Parent=MS.gene003413.t1 |
| chr4.1 | exon | 28538971 | 28539030 | 28538971 | ID=MS.gene003413.t1.exon3;Parent=MS.gene003413.t1 |
| chr4.1 | CDS | 28538971 | 28539030 | 28538971 | ID=cds.MS.gene003413.t1;Parent=MS.gene003413.t1 |
| chr4.1 | exon | 28539117 | 28539186 | 28539117 | ID=MS.gene003413.t1.exon4;Parent=MS.gene003413.t1 |
| chr4.1 | CDS | 28539117 | 28539186 | 28539117 | ID=cds.MS.gene003413.t1;Parent=MS.gene003413.t1 |
| chr4.1 | exon | 28540533 | 28540602 | 28540533 | ID=MS.gene003413.t1.exon5;Parent=MS.gene003413.t1 |
| chr4.1 | CDS | 28540533 | 28540602 | 28540533 | ID=cds.MS.gene003413.t1;Parent=MS.gene003413.t1 |
| chr4.1 | exon | 28541148 | 28541174 | 28541148 | ID=MS.gene003413.t1.exon6;Parent=MS.gene003413.t1 |
| chr4.1 | CDS | 28541148 | 28541174 | 28541148 | ID=cds.MS.gene003413.t1;Parent=MS.gene003413.t1 |
| chr4.1 | exon | 28541287 | 28541336 | 28541287 | ID=MS.gene003413.t1.exon7;Parent=MS.gene003413.t1 |
| chr4.1 | CDS | 28541287 | 28541336 | 28541287 | ID=cds.MS.gene003413.t1;Parent=MS.gene003413.t1 |
| Gene Sequence |
| Protein sequence |
