Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35379.t1 | XP_013464930.1 | 97 | 67 | 2 | 0 | 1 | 67 | 1 | 67 | 3.70E-24 | 120.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35379.t1 | Q9SLF7 | 75.8 | 66 | 16 | 0 | 1 | 66 | 1 | 66 | 6.2e-20 | 98.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35379.t1 | A0A072VLF0 | 97.0 | 67 | 2 | 0 | 1 | 67 | 1 | 67 | 2.7e-24 | 120.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050277 | MS.gene35379 | 0.822584 | 2.19E-53 | -1.69E-46 |
MS.gene050290 | MS.gene35379 | 0.84 | 1.13E-57 | -1.69E-46 |
MS.gene050320 | MS.gene35379 | 0.825249 | 5.20E-54 | -1.69E-46 |
MS.gene050752 | MS.gene35379 | 0.818228 | 2.19E-52 | -1.69E-46 |
MS.gene050838 | MS.gene35379 | 0.835648 | 1.48E-56 | -1.69E-46 |
MS.gene050916 | MS.gene35379 | 0.823437 | 1.39E-53 | -1.69E-46 |
MS.gene050955 | MS.gene35379 | 0.815539 | 8.78E-52 | -1.69E-46 |
MS.gene051330 | MS.gene35379 | 0.878362 | 2.99E-69 | -1.69E-46 |
MS.gene051746 | MS.gene35379 | 0.847106 | 1.43E-59 | -1.69E-46 |
MS.gene051748 | MS.gene35379 | 0.850474 | 1.66E-60 | -1.69E-46 |
MS.gene051756 | MS.gene35379 | 0.805734 | 1.16E-49 | -1.69E-46 |
MS.gene051850 | MS.gene35379 | 0.84246 | 2.55E-58 | -1.69E-46 |
MS.gene051903 | MS.gene35379 | 0.908248 | 2.10E-81 | -1.69E-46 |
MS.gene052947 | MS.gene35379 | 0.868678 | 5.46E-66 | -1.69E-46 |
MS.gene053109 | MS.gene35379 | 0.818878 | 1.56E-52 | -1.69E-46 |
MS.gene053952 | MS.gene35379 | 0.868208 | 7.75E-66 | -1.69E-46 |
MS.gene054403 | MS.gene35379 | 0.821575 | 3.75E-53 | -1.69E-46 |
MS.gene054937 | MS.gene35379 | 0.860084 | 2.64E-63 | -1.69E-46 |
MS.gene056075 | MS.gene35379 | 0.882579 | 9.26E-71 | -1.69E-46 |
MS.gene056631 | MS.gene35379 | 0.831531 | 1.58E-55 | -1.69E-46 |
MS.gene056896 | MS.gene35379 | 0.820068 | 8.34E-53 | -1.69E-46 |
MS.gene057052 | MS.gene35379 | 0.80773 | 4.38E-50 | -1.69E-46 |
MS.gene057094 | MS.gene35379 | 0.877614 | 5.46E-69 | -1.69E-46 |
MS.gene057206 | MS.gene35379 | 0.804555 | 2.04E-49 | -1.69E-46 |
MS.gene057705 | MS.gene35379 | 0.800513 | 1.39E-48 | -1.69E-46 |
MS.gene058074 | MS.gene35379 | 0.815049 | 1.13E-51 | -1.69E-46 |
MS.gene058238 | MS.gene35379 | 0.813773 | 2.16E-51 | -1.69E-46 |
MS.gene058354 | MS.gene35379 | 0.858742 | 6.69E-63 | -1.69E-46 |
MS.gene058364 | MS.gene35379 | 0.834541 | 2.82E-56 | -1.69E-46 |
MS.gene059227 | MS.gene35379 | 0.827271 | 1.72E-54 | -1.69E-46 |
MS.gene059726 | MS.gene35379 | 0.800964 | 1.13E-48 | -1.69E-46 |
MS.gene06001 | MS.gene35379 | 0.884733 | 1.49E-71 | -1.69E-46 |
MS.gene061145 | MS.gene35379 | 0.806774 | 6.99E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene06617 | MS.gene35379 | PPI |
MS.gene057237 | MS.gene35379 | PPI |
MS.gene88792 | MS.gene35379 | PPI |
MS.gene01952 | MS.gene35379 | PPI |
MS.gene43071 | MS.gene35379 | PPI |
MS.gene08521 | MS.gene35379 | PPI |
MS.gene06833 | MS.gene35379 | PPI |
MS.gene067331 | MS.gene35379 | PPI |
MS.gene045633 | MS.gene35379 | PPI |
MS.gene76615 | MS.gene35379 | PPI |
MS.gene050761 | MS.gene35379 | PPI |
MS.gene78764 | MS.gene35379 | PPI |
MS.gene82009 | MS.gene35379 | PPI |
MS.gene073078 | MS.gene35379 | PPI |
MS.gene053952 | MS.gene35379 | PPI |
MS.gene032942 | MS.gene35379 | PPI |
MS.gene052265 | MS.gene35379 | PPI |
MS.gene009874 | MS.gene35379 | PPI |
MS.gene28964 | MS.gene35379 | PPI |
MS.gene072563 | MS.gene35379 | PPI |
MS.gene28704 | MS.gene35379 | PPI |
MS.gene052268 | MS.gene35379 | PPI |
MS.gene44900 | MS.gene35379 | PPI |
MS.gene35379 | MS.gene91826 | PPI |
MS.gene35379 | MS.gene78764 | PPI |
MS.gene91826 | MS.gene35379 | PPI |
MS.gene050964 | MS.gene35379 | PPI |
MS.gene060483 | MS.gene35379 | PPI |
MS.gene003413 | MS.gene35379 | PPI |
MS.gene042719 | MS.gene35379 | PPI |
MS.gene013506 | MS.gene35379 | PPI |
MS.gene054381 | MS.gene35379 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35379.t1 | MTR_2g085085 | 96.460 | 113 | 4 | 0 | 1 | 113 | 1 | 113 | 4.48e-70 | 205 |
MS.gene35379.t1 | MTR_0227s0020 | 87.611 | 113 | 14 | 0 | 1 | 113 | 1 | 113 | 6.53e-38 | 124 |
MS.gene35379.t1 | MTR_1g060600 | 73.451 | 113 | 29 | 1 | 1 | 113 | 1 | 112 | 1.06e-29 | 103 |
MS.gene35379.t1 | MTR_2g085105 | 96.552 | 29 | 1 | 0 | 1 | 29 | 1 | 29 | 1.01e-12 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35379.t1 | AT2G27710 | 77.143 | 70 | 16 | 0 | 1 | 70 | 1 | 70 | 9.01e-32 | 108 |
MS.gene35379.t1 | AT3G44590 | 67.257 | 113 | 35 | 2 | 1 | 113 | 1 | 111 | 8.06e-30 | 103 |
MS.gene35379.t1 | AT3G44590 | 67.257 | 113 | 35 | 2 | 1 | 113 | 1 | 111 | 8.06e-30 | 103 |
MS.gene35379.t1 | AT2G27720 | 66.087 | 115 | 37 | 1 | 1 | 113 | 1 | 115 | 1.86e-27 | 97.8 |
MS.gene35379.t1 | AT2G27710 | 75.385 | 65 | 16 | 0 | 1 | 65 | 1 | 65 | 2.36e-25 | 92.4 |
MS.gene35379.t1 | AT2G27710 | 75.385 | 65 | 16 | 0 | 1 | 65 | 1 | 65 | 2.36e-25 | 92.4 |
MS.gene35379.t1 | AT2G27710 | 75.385 | 65 | 16 | 0 | 1 | 65 | 1 | 65 | 2.36e-25 | 92.4 |
MS.gene35379.t1 | AT3G28500 | 55.652 | 115 | 49 | 2 | 1 | 113 | 1 | 115 | 3.03e-25 | 92.0 |
MS.gene35379.t1 | AT2G27720 | 59.843 | 127 | 37 | 2 | 1 | 113 | 1 | 127 | 6.44e-24 | 89.0 |
MS.gene35379.t1 | AT2G27720 | 57.692 | 130 | 38 | 2 | 1 | 113 | 1 | 130 | 1.39e-22 | 85.9 |
MS.gene35379.t1 | AT5G40040 | 57.895 | 114 | 47 | 1 | 1 | 113 | 1 | 114 | 2.22e-16 | 69.3 |
MS.gene35379.t1 | AT2G27720 | 66.667 | 87 | 27 | 1 | 29 | 113 | 5 | 91 | 5.49e-13 | 60.1 |
Find 34 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTTACTTGTTGGCCGTTT+TGG | 0.128749 | 2.1:+16351250 | MS.gene35379:CDS |
GCTGATCTTAAACAAATTCT+TGG | 0.267351 | 2.1:+16351296 | MS.gene35379:CDS |
GTTGCTGTGTCTGCTGCAAC+TGG | 0.362343 | 2.1:+16352413 | MS.gene35379:CDS |
TCTTCCTTTGCTGCTTCAGC+AGG | 0.362525 | 2.1:-16352458 | None:intergenic |
CTTAAACAAATTCTTGGATC+AGG | 0.372982 | 2.1:+16351302 | MS.gene35379:CDS |
GTTATCTTTGTGCAGGATAT+GGG | 0.399106 | 2.1:+16352587 | MS.gene35379:intron |
AGAGAAGAAGGTGGAAGAGA+AGG | 0.434796 | 2.1:+16352478 | MS.gene35379:CDS |
GATTATCGCAGCTTACTTGT+TGG | 0.445399 | 2.1:+16351241 | MS.gene35379:CDS |
GTGTCTGCTGCAACTGGAGG+AGG | 0.445905 | 2.1:+16352419 | MS.gene35379:CDS |
GATCAGCAGCTGAAGGGGAT+TGG | 0.469713 | 2.1:-16351280 | None:intergenic |
CCTTGCCCTTGACTTCACTT+AGG | 0.488662 | 2.1:-16352325 | None:intergenic |
TGCCAGTGGAAGAGAAAAGT+TGG | 0.491656 | 2.1:+16352364 | MS.gene35379:CDS |
CACAGCAACAGCACCACCAC+CGG | 0.500128 | 2.1:-16352399 | None:intergenic |
AGCAGCAAAGGAAGAGAAGA+AGG | 0.518126 | 2.1:+16352466 | MS.gene35379:CDS |
GCTTCAGTTCCATCCGGTGG+TGG | 0.522209 | 2.1:+16352386 | MS.gene35379:CDS |
TGCACCTGCTGAAGCAGCAA+AGG | 0.528481 | 2.1:+16352454 | MS.gene35379:CDS |
GGATTGGTTGCCTCCCAAAA+CGG | 0.534645 | 2.1:-16351264 | None:intergenic |
CAACTCAATGTTGCCATCCT+CGG | 0.536919 | 2.1:-16352300 | None:intergenic |
GCAACAGCACCACCACCGGA+TGG | 0.539099 | 2.1:-16352395 | None:intergenic |
TGTTTAAGATCAGCAGCTGA+AGG | 0.541739 | 2.1:-16351287 | None:intergenic |
TCTTCCACTGGCAATAAGCT+CGG | 0.547245 | 2.1:-16352354 | None:intergenic |
GTTTAAGATCAGCAGCTGAA+GGG | 0.564265 | 2.1:-16351286 | None:intergenic |
TTTAAGATCAGCAGCTGAAG+GGG | 0.564880 | 2.1:-16351285 | None:intergenic |
AAGTTGGCTTCAGTTCCATC+CGG | 0.567453 | 2.1:+16352380 | MS.gene35379:CDS |
GTTGGAGTTGAGGCCGAGGA+TGG | 0.573673 | 2.1:+16352287 | MS.gene35379:intron |
GTTGCTCCTAAGTGAAGTCA+AGG | 0.590863 | 2.1:+16352319 | MS.gene35379:CDS |
GCTGTGTCTGCTGCAACTGG+AGG | 0.592795 | 2.1:+16352416 | MS.gene35379:CDS |
TATGATTGTAGTTGGAGTTG+AGG | 0.599920 | 2.1:+16352277 | MS.gene35379:intron |
TTTGCCGAGCTTATTGCCAG+TGG | 0.606365 | 2.1:+16352350 | MS.gene35379:CDS |
TTGGCTTCAGTTCCATCCGG+TGG | 0.607108 | 2.1:+16352383 | MS.gene35379:CDS |
CCTAAGTGAAGTCAAGGGCA+AGG | 0.616488 | 2.1:+16352325 | MS.gene35379:CDS |
TGTAGTTGGAGTTGAGGCCG+AGG | 0.617745 | 2.1:+16352283 | MS.gene35379:intron |
TTGCTCCTAAGTGAAGTCAA+GGG | 0.680870 | 2.1:+16352320 | MS.gene35379:CDS |
AGCAAAGGAAGAGAAGAAGG+TGG | 0.683753 | 2.1:+16352469 | MS.gene35379:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAGATTAAAGATTAAAT+TGG | - | chr2.1:16351340-16351359 | None:intergenic | 10.0% |
!! | ATTAGATTAAAGATTAAATT+GGG | - | chr2.1:16351339-16351358 | None:intergenic | 10.0% |
!!! | AAATAATTTTAATTCAAGTT+TGG | + | chr2.1:16351741-16351760 | MS.gene35379:intron | 10.0% |
!!! | AATAATTTTAATTCAAGTTT+GGG | + | chr2.1:16351742-16351761 | MS.gene35379:intron | 10.0% |
!! | ATGAAAATTGATCAAAATAT+TGG | + | chr2.1:16351823-16351842 | MS.gene35379:intron | 15.0% |
!! | ATTAAAATCAAACCAATATA+TGG | - | chr2.1:16352098-16352117 | None:intergenic | 15.0% |
!! | TTAAAATCAAACCAATATAT+GGG | - | chr2.1:16352097-16352116 | None:intergenic | 15.0% |
!!! | AAAAAAAGTGACTTTATTTT+TGG | + | chr2.1:16352251-16352270 | MS.gene35379:intron | 15.0% |
!!! | AAAAAAGTGACTTTATTTTT+GGG | + | chr2.1:16352252-16352271 | MS.gene35379:intron | 15.0% |
!!! | TTTAACTTTAATTCAAGTTT+GGG | + | chr2.1:16351775-16351794 | MS.gene35379:intron | 15.0% |
!! | ATGGATCTACTAAAATAATT+CGG | - | chr2.1:16351433-16351452 | None:intergenic | 20.0% |
!! | TAAAATCAAACCAATATATG+GGG | - | chr2.1:16352096-16352115 | None:intergenic | 20.0% |
!! | TATAGTTTATGCAAATTCAT+AGG | + | chr2.1:16352011-16352030 | MS.gene35379:intron | 20.0% |
!!! | AAATATTGGTTTATTTGGAT+TGG | + | chr2.1:16351837-16351856 | MS.gene35379:intron | 20.0% |
!!! | AATTTTGAAACTTACATCAT+CGG | - | chr2.1:16352510-16352529 | None:intergenic | 20.0% |
!!! | ATATTCTACACTTTTACTTA+TGG | - | chr2.1:16351452-16351471 | None:intergenic | 20.0% |
!!! | GATCAAAATATTGGTTTATT+TGG | + | chr2.1:16351832-16351851 | MS.gene35379:intron | 20.0% |
!!! | GGATTTGGTTAATTTATAAT+CGG | + | chr2.1:16351599-16351618 | MS.gene35379:intron | 20.0% |
!!! | GTTTAACTTTAATTCAAGTT+TGG | + | chr2.1:16351774-16351793 | MS.gene35379:intron | 20.0% |
!!! | TGCTAATTTAATTCAAGTTT+AGG | + | chr2.1:16351578-16351597 | MS.gene35379:intron | 20.0% |
!!! | TTTAATTCAAGTTTAGGATT+TGG | + | chr2.1:16351584-16351603 | MS.gene35379:intron | 20.0% |
! | AAATAATCAATCCTAGAATG+TGG | + | chr2.1:16351534-16351553 | MS.gene35379:intron | 25.0% |
! | AATAATCAATCCTAGAATGT+GGG | + | chr2.1:16351535-16351554 | MS.gene35379:intron | 25.0% |
! | TAAAATCGATGAATGAACAT+GGG | + | chr2.1:16351628-16351647 | MS.gene35379:intron | 25.0% |
! | TACTTTCAATTAGAGATTGT+GGG | + | chr2.1:16351477-16351496 | MS.gene35379:intron | 25.0% |
! | TTAAAATCGATGAATGAACA+TGG | + | chr2.1:16351627-16351646 | MS.gene35379:intron | 25.0% |
! | TTACTTTCAATTAGAGATTG+TGG | + | chr2.1:16351476-16351495 | MS.gene35379:intron | 25.0% |
!! | TAGTAGTATTGTTTGTTACT+TGG | + | chr2.1:16352532-16352551 | MS.gene35379:intron | 25.0% |
!!! | ATTTTAATTCAAGTTTGGGT+TGG | + | chr2.1:16351746-16351765 | MS.gene35379:intron | 25.0% |
!!! | GCTTAGTTTTATACATTGTT+TGG | + | chr2.1:16352118-16352137 | MS.gene35379:intron | 25.0% |
!!! | TTTTAATTCAAGTTTGGGTT+GGG | + | chr2.1:16351747-16351766 | MS.gene35379:intron | 25.0% |
CTTAAACAAATTCTTGGATC+AGG | + | chr2.1:16351302-16351321 | MS.gene35379:CDS | 30.0% | |
GCTGATCTTAAACAAATTCT+TGG | + | chr2.1:16351296-16351315 | MS.gene35379:CDS | 30.0% | |
TATCTACTGTTAGACTGTTA+AGG | + | chr2.1:16351873-16351892 | MS.gene35379:intron | 30.0% | |
AATCAAACAGCCCCATATAT+TGG | + | chr2.1:16352083-16352102 | MS.gene35379:intron | 35.0% | |
ATTCGGATACTAATCGAAAC+CGG | - | chr2.1:16351416-16351435 | None:intergenic | 35.0% | |
CTTCATTATACCCACATTCT+AGG | - | chr2.1:16351548-16351567 | None:intergenic | 35.0% | |
GTTATCTTTGTGCAGGATAT+GGG | + | chr2.1:16352587-16352606 | MS.gene35379:intron | 35.0% | |
TATCTACTGTTGGACAGTTT+GGG | + | chr2.1:16351678-16351697 | MS.gene35379:intron | 35.0% | |
TATGATTGTAGTTGGAGTTG+AGG | + | chr2.1:16352277-16352296 | MS.gene35379:intron | 35.0% | |
TGTTATCTTTGTGCAGGATA+TGG | + | chr2.1:16352586-16352605 | MS.gene35379:intron | 35.0% | |
TTATCTACTGTTGGACAGTT+TGG | + | chr2.1:16351677-16351696 | MS.gene35379:intron | 35.0% | |
TTTGGGTCTATGATTGTAGT+TGG | + | chr2.1:16352269-16352288 | MS.gene35379:intron | 35.0% | |
!!! | GCGTTTTTTGTTTGTTTTCC+CGG | + | chr2.1:16351394-16351413 | MS.gene35379:intron | 35.0% |
CGTTTGAGCTTATCTACTGT+TGG | + | chr2.1:16351668-16351687 | MS.gene35379:intron | 40.0% | |
GATTATCGCAGCTTACTTGT+TGG | + | chr2.1:16351241-16351260 | MS.gene35379:CDS | 40.0% | |
GCGTAATGTTATCTTTGTGC+AGG | + | chr2.1:16352580-16352599 | MS.gene35379:intron | 40.0% | |
TGAATGAACATGGGTCTGTT+TGG | + | chr2.1:16351637-16351656 | MS.gene35379:intron | 40.0% | |
TTCGGATACTAATCGAAACC+GGG | - | chr2.1:16351415-16351434 | None:intergenic | 40.0% | |
TTGCTCCTAAGTGAAGTCAA+GGG | + | chr2.1:16352320-16352339 | MS.gene35379:CDS | 40.0% | |
! | GTTTAAGATCAGCAGCTGAA+GGG | - | chr2.1:16351289-16351308 | None:intergenic | 40.0% |
! | TGTTTAAGATCAGCAGCTGA+AGG | - | chr2.1:16351290-16351309 | None:intergenic | 40.0% |
! | TTTAAGATCAGCAGCTGAAG+GGG | - | chr2.1:16351288-16351307 | None:intergenic | 40.0% |
AGAGAAGAAGGTGGAAGAGA+AGG | + | chr2.1:16352478-16352497 | MS.gene35379:CDS | 45.0% | |
AGCAAAGGAAGAGAAGAAGG+TGG | + | chr2.1:16352469-16352488 | MS.gene35379:CDS | 45.0% | |
AGCAGCAAAGGAAGAGAAGA+AGG | + | chr2.1:16352466-16352485 | MS.gene35379:CDS | 45.0% | |
CAACTCAATGTTGCCATCCT+CGG | - | chr2.1:16352303-16352322 | None:intergenic | 45.0% | |
GAACATGGGTCTGTTTGGAT+TGG | + | chr2.1:16351642-16351661 | MS.gene35379:intron | 45.0% | |
GTTGCTCCTAAGTGAAGTCA+AGG | + | chr2.1:16352319-16352338 | MS.gene35379:CDS | 45.0% | |
TCTTCCACTGGCAATAAGCT+CGG | - | chr2.1:16352357-16352376 | None:intergenic | 45.0% | |
TGCCAGTGGAAGAGAAAAGT+TGG | + | chr2.1:16352364-16352383 | MS.gene35379:CDS | 45.0% | |
! | AAGTTGGCTTCAGTTCCATC+CGG | + | chr2.1:16352380-16352399 | MS.gene35379:CDS | 45.0% |
! | AGCCAACTTTTCTCTTCCAC+TGG | - | chr2.1:16352369-16352388 | None:intergenic | 45.0% |
!! | AGCTTACTTGTTGGCCGTTT+TGG | + | chr2.1:16351250-16351269 | MS.gene35379:CDS | 45.0% |
!! | GCTTACTTGTTGGCCGTTTT+GGG | + | chr2.1:16351251-16351270 | MS.gene35379:CDS | 45.0% |
CCTAAGTGAAGTCAAGGGCA+AGG | + | chr2.1:16352325-16352344 | MS.gene35379:CDS | 50.0% | |
CCTTGCCCTTGACTTCACTT+AGG | - | chr2.1:16352328-16352347 | None:intergenic | 50.0% | |
TTTGCCGAGCTTATTGCCAG+TGG | + | chr2.1:16352350-16352369 | MS.gene35379:CDS | 50.0% | |
! | TCTTCCTTTGCTGCTTCAGC+AGG | - | chr2.1:16352461-16352480 | None:intergenic | 50.0% |
!! | GGATTGGTTGCCTCCCAAAA+CGG | - | chr2.1:16351267-16351286 | None:intergenic | 50.0% |
!! | TACTTGTTGGCCGTTTTGGG+AGG | + | chr2.1:16351254-16351273 | MS.gene35379:CDS | 50.0% |
GATCAGCAGCTGAAGGGGAT+TGG | - | chr2.1:16351283-16351302 | None:intergenic | 55.0% | |
GTTGCTGTGTCTGCTGCAAC+TGG | + | chr2.1:16352413-16352432 | MS.gene35379:CDS | 55.0% | |
TGCACCTGCTGAAGCAGCAA+AGG | + | chr2.1:16352454-16352473 | MS.gene35379:CDS | 55.0% | |
TGTAGTTGGAGTTGAGGCCG+AGG | + | chr2.1:16352283-16352302 | MS.gene35379:intron | 55.0% | |
TTGGCTTCAGTTCCATCCGG+TGG | + | chr2.1:16352383-16352402 | MS.gene35379:CDS | 55.0% | |
CACAGCAACAGCACCACCAC+CGG | - | chr2.1:16352402-16352421 | None:intergenic | 60.0% | |
GCTGTGTCTGCTGCAACTGG+AGG | + | chr2.1:16352416-16352435 | MS.gene35379:CDS | 60.0% | |
GCTTCAGTTCCATCCGGTGG+TGG | + | chr2.1:16352386-16352405 | MS.gene35379:CDS | 60.0% | |
GTGTCTGCTGCAACTGGAGG+AGG | + | chr2.1:16352419-16352438 | MS.gene35379:CDS | 60.0% | |
GTTGGAGTTGAGGCCGAGGA+TGG | + | chr2.1:16352287-16352306 | MS.gene35379:intron | 60.0% | |
GCAACAGCACCACCACCGGA+TGG | - | chr2.1:16352398-16352417 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 16351236 | 16352628 | 16351236 | ID=MS.gene35379 |
chr2.1 | mRNA | 16351236 | 16352628 | 16351236 | ID=MS.gene35379.t1;Parent=MS.gene35379 |
chr2.1 | exon | 16351236 | 16351323 | 16351236 | ID=MS.gene35379.t1.exon1;Parent=MS.gene35379.t1 |
chr2.1 | CDS | 16351236 | 16351323 | 16351236 | ID=cds.MS.gene35379.t1;Parent=MS.gene35379.t1 |
chr2.1 | exon | 16352288 | 16352514 | 16352288 | ID=MS.gene35379.t1.exon2;Parent=MS.gene35379.t1 |
chr2.1 | CDS | 16352288 | 16352514 | 16352288 | ID=cds.MS.gene35379.t1;Parent=MS.gene35379.t1 |
chr2.1 | exon | 16352602 | 16352628 | 16352602 | ID=MS.gene35379.t1.exon3;Parent=MS.gene35379.t1 |
chr2.1 | CDS | 16352602 | 16352628 | 16352602 | ID=cds.MS.gene35379.t1;Parent=MS.gene35379.t1 |
Gene Sequence |
Protein sequence |