AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004828


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004828.t1 MTR_1g075650 89.062 576 21 3 110 685 3 536 0.0 1038
MS.gene004828.t1 MTR_4g080823 63.897 698 237 7 3 686 63 759 0.0 897
MS.gene004828.t1 MTR_4g080890 65.306 686 226 7 10 686 68 750 0.0 891
MS.gene004828.t1 MTR_7g097210 57.956 685 275 6 5 681 52 731 0.0 786
MS.gene004828.t1 MTR_0651s0010 64.214 598 200 6 3 587 54 650 0.0 757
MS.gene004828.t1 MTR_7g097210 60.708 565 216 5 118 681 2 561 0.0 685
MS.gene004828.t1 MTR_5g025650 43.324 734 359 13 2 686 103 828 0.0 560
MS.gene004828.t1 MTR_8g072210 43.732 686 336 13 42 686 133 809 4.27e-178 528
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004828.t1 AT3G23410 60.714 672 253 6 17 681 70 737 0.0 822
MS.gene004828.t1 AT3G23410 60.624 673 254 6 16 681 1 669 0.0 820
MS.gene004828.t1 AT4G28570 56.185 671 285 5 17 680 70 738 0.0 754
MS.gene004828.t1 AT4G28570 56.185 671 285 5 17 680 70 738 0.0 754
MS.gene004828.t1 AT1G03990 52.000 675 316 5 17 686 83 754 0.0 718
MS.gene004828.t1 AT4G19380 43.966 696 350 13 17 686 85 766 0.0 544
MS.gene004828.t1 AT4G19380 43.966 696 350 13 17 686 43 724 0.0 544

Find 145 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTTCAAGACCTTTAT+TGG 0.059318 1.4:+61933746 None:intergenic
CAAAGCTGAAAAGTTTATTT+TGG 0.172640 1.4:-61933109 MS.gene004828:CDS
TCATTTCATCACAATTATTC+AGG 0.270130 1.4:-61932659 MS.gene004828:CDS
AATCCACTAGAGATCATTAA+AGG 0.281307 1.4:+61932949 None:intergenic
TACTGTGGTTCTTGTAACTA+TGG 0.298645 1.4:-61933216 MS.gene004828:CDS
ACATGATGAGATTGTTGCTT+TGG 0.307255 1.4:+61932990 None:intergenic
GAAGGCGCGGTTGATGAAAA+TGG 0.308832 1.4:-61932325 MS.gene004828:CDS
CTAAGGAGTATAACTACTTC+TGG 0.331620 1.4:+61934233 None:intergenic
TCTTATCAGTGATGAGTTGC+AGG 0.336858 1.4:-61934548 MS.gene004828:intron
TGCAACTCCTCCACCGCAAC+CGG 0.337562 1.4:+61933668 None:intergenic
GCTGCTGTTCTTGCAAGTTC+AGG 0.339077 1.4:-61933645 MS.gene004828:CDS
AAAGAAATGTTTAGGAGTTA+TGG 0.342167 1.4:-61933058 MS.gene004828:CDS
CAAAGTACTTGTTCTTGAAA+AGG 0.354993 1.4:-61933619 MS.gene004828:CDS
TACTCCTTAGAGTGATTCTA+TGG 0.357436 1.4:-61934220 MS.gene004828:CDS
GTCGGTTCCGGTTGCGGTGG+AGG 0.360501 1.4:-61933675 MS.gene004828:CDS
TAAAGAAATGCAAGTCTAAT+AGG 0.370907 1.4:+61934050 None:intergenic
AGTTTGTTTCCAACTGCAAT+AGG 0.371971 1.4:-61932262 MS.gene004828:CDS
ACCGTGATTCCTTGGGAATC+CGG 0.373513 1.4:-61932724 MS.gene004828:CDS
TGTAACTATGGTTGTAGAAA+AGG 0.378475 1.4:-61933204 MS.gene004828:CDS
CCACATCACATTTCACTTTG+AGG 0.379505 1.4:+61933703 None:intergenic
CCGCAATCTCTTTCCAATAA+AGG 0.385176 1.4:-61933759 MS.gene004828:CDS
GTGGTGGTTCCGCTATTAAT+TGG 0.387119 1.4:-61933470 MS.gene004828:CDS
CTCACCAGATGGGGAGTTGT+AGG 0.393313 1.4:-61932366 MS.gene004828:CDS
GTGAGAAGAAAGAAATGTTT+AGG 0.399497 1.4:-61933066 MS.gene004828:CDS
CCTTATTGTATTCTTCTCTC+AGG 0.411125 1.4:-61934012 MS.gene004828:intron
AAAGTACTTGTTCTTGAAAA+GGG 0.411239 1.4:-61933618 MS.gene004828:CDS
TTTCAAGAACAAGTACTTTG+AGG 0.415676 1.4:+61933622 None:intergenic
ATTGAATAAGTTCGTGGAAT+CGG 0.417093 1.4:-61932446 MS.gene004828:CDS
ATGGATACTATCAACAAAGT+TGG 0.417935 1.4:-61934201 MS.gene004828:CDS
CAATGTCACATCAAGAAACT+TGG 0.418548 1.4:-61932405 MS.gene004828:CDS
GCCTCTTGAAAGGGGAATAG+TGG 0.419077 1.4:-61933811 MS.gene004828:CDS
AACCAATGGCTTCCCATGCT+TGG 0.429321 1.4:+61933880 None:intergenic
CCTGAGAGAAGAATACAATA+AGG 0.430373 1.4:+61934012 None:intergenic
CTATCCTACAACTCCCCATC+TGG 0.432987 1.4:+61932362 None:intergenic
TCTTTCTTTGAAGTCGAATC+CGG 0.438032 1.4:+61932705 None:intergenic
CTTCTTGCAGGTTCAACAGT+TGG 0.438729 1.4:-61933492 MS.gene004828:CDS
CTTGCAGGTTCAACAGTTGG+TGG 0.439522 1.4:-61933489 MS.gene004828:CDS
TGATGCTCTGATGAATTTCT+CGG 0.439798 1.4:+61933240 None:intergenic
TTGAATGAGCTTTATGAACT+AGG 0.441032 1.4:-61933549 MS.gene004828:CDS
CCAAGAGAATTGCACTGATT+CGG 0.441462 1.4:-61932195 MS.gene004828:CDS
CTCTCTGTCTGACTAAGAAA+TGG 0.442240 1.4:-61934157 MS.gene004828:CDS
CGAAAAGGTTGTAACGAACT+TGG 0.445062 1.4:-61933282 MS.gene004828:CDS
CCGAATCAGTGCAATTCTCT+TGG 0.448817 1.4:+61932195 None:intergenic
AATAGACTGAATAGTTATCA+TGG 0.450012 1.4:+61932231 None:intergenic
GTATCCATAGAATCACTCTA+AGG 0.453819 1.4:+61934216 None:intergenic
TTGTAGTGGAACTAATGAAA+TGG 0.455269 1.4:-61932470 MS.gene004828:CDS
CAGAATCAAGTTCTCCGAAA+AGG 0.456324 1.4:-61933297 MS.gene004828:CDS
CCATAGCAGAAAGATATTCC+TGG 0.468898 1.4:+61933373 None:intergenic
CGGATTATGTGCTAACAGAT+TGG 0.473263 1.4:-61933428 MS.gene004828:CDS
AAAAGAGAGGCCTCTTGAAA+GGG 0.473476 1.4:-61933820 MS.gene004828:CDS
CATGAAGCATGGACTGCAGC+GGG 0.474651 1.4:-61932563 MS.gene004828:CDS
GTAATTGTCGGTTCCGGTTG+CGG 0.477209 1.4:-61933681 MS.gene004828:CDS
CTGAGGATACTAATAGCAGC+TGG 0.477632 1.4:-61932538 MS.gene004828:CDS
TTCTTTGCAAAACAGAGAAA+AGG 0.480100 1.4:-61934108 MS.gene004828:CDS
AATAGCAGCTGGAGCGGTTG+AGG 0.480128 1.4:-61932527 MS.gene004828:CDS
TGATGAAAATGGACAAAGTT+GGG 0.482821 1.4:-61932314 MS.gene004828:CDS
TTTGAGAAGTTGTTGATGAA+AGG 0.483652 1.4:+61934134 None:intergenic
CAAGTTTCTTGATGTGACAT+TGG 0.487189 1.4:+61932406 None:intergenic
GCAGGTTCAACAGTTGGTGG+TGG 0.495510 1.4:-61933486 MS.gene004828:CDS
CAATCTGTTAGCACATAATC+CGG 0.496225 1.4:+61933429 None:intergenic
TCTCAAGGGTAAAAGCTATG+AGG 0.496801 1.4:-61932845 MS.gene004828:CDS
GGATTAAAGAATAAGAATAT+CGG 0.503081 1.4:-61932931 MS.gene004828:CDS
TGGATACTATCAACAAAGTT+GGG 0.508773 1.4:-61934200 MS.gene004828:CDS
CCAGGAATATCTTTCTGCTA+TGG 0.508865 1.4:-61933373 MS.gene004828:CDS
TTGATGAAAATGGACAAAGT+TGG 0.532376 1.4:-61932315 MS.gene004828:CDS
TCCTTCAACCACACAAGTAT+CGG 0.532686 1.4:+61933323 None:intergenic
GGATTGATACCTATTGCAGT+TGG 0.535199 1.4:+61932253 None:intergenic
CACATTGAAAATTCAAGTTG+AGG 0.538683 1.4:-61933013 MS.gene004828:CDS
TCCACTATTCCCCTTTCAAG+AGG 0.539992 1.4:+61933810 None:intergenic
GGACACAATGTCTGATCTCA+AGG 0.540207 1.4:-61932860 MS.gene004828:CDS
ATCACAATTATTCAGGACAA+AGG 0.541062 1.4:-61932652 MS.gene004828:CDS
AATGGAATTGAATAAGTTCG+TGG 0.543373 1.4:-61932452 MS.gene004828:CDS
TTGAGATCAGACATTGTGTC+CGG 0.544200 1.4:+61932862 None:intergenic
ACCGATACTTGTGTGGTTGA+AGG 0.546489 1.4:-61933324 MS.gene004828:CDS
TCCGGATTCCCAAGGAATCA+CGG 0.548198 1.4:+61932723 None:intergenic
CTCAAGGGTAAAAGCTATGA+GGG 0.548924 1.4:-61932844 MS.gene004828:CDS
AACAAGGGACCGATGTTACA+TGG 0.551305 1.4:-61933176 MS.gene004828:CDS
TATGCATCTGCTCACCAGAT+GGG 0.553951 1.4:-61932376 MS.gene004828:CDS
GAATCGGTTTGCGCAGCAGA+AGG 0.554516 1.4:-61932430 MS.gene004828:CDS
GATGTGGTAATTGTCGGTTC+CGG 0.558351 1.4:-61933687 MS.gene004828:CDS
AGAATGGTGAAAACCAAGCA+TGG 0.558763 1.4:-61933893 MS.gene004828:CDS
GTATGCATCTGCTCACCAGA+TGG 0.560838 1.4:-61932377 MS.gene004828:CDS
GCAGCTGGAGCGGTTGAGGT+AGG 0.565339 1.4:-61932523 MS.gene004828:CDS
CCACCTTTAATGATCTCTAG+TGG 0.569008 1.4:-61932952 MS.gene004828:CDS
ATTATTCAGGACAAAGGCTG+TGG 0.571257 1.4:-61932646 MS.gene004828:CDS
AATAGTGGAAGCTATGAATG+AGG 0.571988 1.4:-61933796 MS.gene004828:CDS
GAGAGGTGAAGAGCGAGGGT+AGG 0.576606 1.4:-61932624 MS.gene004828:CDS
GTCAGCATCGATTAAAACAC+CGG 0.576906 1.4:-61933448 MS.gene004828:CDS
ATAGGAATCACTGACAAAGA+AGG 0.578028 1.4:-61932343 MS.gene004828:CDS
CTATGGACACAGTGTGTGAA+AGG 0.583294 1.4:-61933356 MS.gene004828:CDS
AACCAAGCATGGGAAGCCAT+TGG 0.585115 1.4:-61933882 MS.gene004828:CDS
ATCACGGTAGAAAATGCTCC+TGG 0.585658 1.4:+61932739 None:intergenic
ATTGTCGGTTCCGGTTGCGG+TGG 0.585797 1.4:-61933678 MS.gene004828:CDS
TTCATCCCGTGCTAATGACG+TGG 0.588547 1.4:-61932894 MS.gene004828:CDS
AAATGTGATGTGGTAATTGT+CGG 0.589360 1.4:-61933693 MS.gene004828:CDS
GTAGGTACTCACAGAAGTGA+TGG 0.590039 1.4:-61932505 MS.gene004828:CDS
TTCATAAAGCTCATTCAAAG+AGG 0.590225 1.4:+61933554 None:intergenic
ATAGACTGAATAGTTATCAT+GGG 0.590238 1.4:+61932232 None:intergenic
TCATAAAGCTCATTCAAAGA+GGG 0.592604 1.4:+61933555 None:intergenic
CAGATGGGGAGTTGTAGGAT+AGG 0.592630 1.4:-61932361 MS.gene004828:CDS
TGTCCCCACGTCATTAGCAC+GGG 0.592912 1.4:+61932889 None:intergenic
CCTTTATTGGAAAGAGATTG+CGG 0.595401 1.4:+61933759 None:intergenic
GGACAGAGAATTGTTTGTAG+TGG 0.596435 1.4:-61932484 MS.gene004828:CDS
TGTGGAGAGGTGAAGAGCGA+GGG 0.597034 1.4:-61932628 MS.gene004828:CDS
ATGTCCCCACGTCATTAGCA+CGG 0.598867 1.4:+61932888 None:intergenic
AAGTCGAATCCGGATTCCCA+AGG 0.600974 1.4:+61932715 None:intergenic
ATTGTCAACATGATAACCAA+TGG 0.604094 1.4:+61933866 None:intergenic
CTTGTCGATGCTGTGGAACA+CGG 0.606706 1.4:-61933153 MS.gene004828:CDS
ATGGACTGCAGCGGGCGCTG+AGG 0.607128 1.4:-61932555 MS.gene004828:CDS
GACAAAGAGAACATGAAGCA+TGG 0.609245 1.4:-61932574 MS.gene004828:CDS
AGAAGAATACAATAAGGCAA+AGG 0.611697 1.4:+61934018 None:intergenic
TCATCCCGTGCTAATGACGT+GGG 0.611801 1.4:-61932893 MS.gene004828:CDS
GAATGGTGAAAACCAAGCAT+GGG 0.613187 1.4:-61933892 MS.gene004828:CDS
CTGTGGAGAGGTGAAGAGCG+AGG 0.615354 1.4:-61932629 MS.gene004828:CDS
AATGAGCTTTATGAACTAGG+AGG 0.619554 1.4:-61933546 MS.gene004828:CDS
TTAGCACGGGATGAAGATGA+AGG 0.622006 1.4:+61932902 None:intergenic
AGAGATCATTAAAGGTGGCG+TGG 0.622955 1.4:+61932957 None:intergenic
GAAACTCCTTCACTAGGACC+AGG 0.624328 1.4:-61932757 MS.gene004828:CDS
AAAGCAACAATCTCATCATG+TGG 0.629269 1.4:-61932988 MS.gene004828:CDS
TGTAGAAAAGGAAATAAACA+AGG 0.630244 1.4:-61933192 MS.gene004828:CDS
AATGCTCCTGGTCCTAGTGA+AGG 0.631108 1.4:+61932751 None:intergenic
AAAGAGAGGCCTCTTGAAAG+GGG 0.631245 1.4:-61933819 MS.gene004828:CDS
GATACTAATAGCAGCTGGAG+CGG 0.631509 1.4:-61932533 MS.gene004828:CDS
ATCGACAAGCCATGTAACAT+CGG 0.634021 1.4:+61933167 None:intergenic
ACATGAAGCATGGACTGCAG+CGG 0.635189 1.4:-61932564 MS.gene004828:CDS
CGGGATGAAGATGAAGGTGT+CGG 0.635230 1.4:+61932908 None:intergenic
TATTCCTGGCTTGAAAAGAG+TGG 0.635586 1.4:+61933387 None:intergenic
ATAATTGAAACTCCTTCACT+AGG 0.640706 1.4:-61932763 MS.gene004828:CDS
GGACAAAGTTGGGAAGCTGA+AGG 0.643162 1.4:-61932304 MS.gene004828:CDS
ATGCATCTGCTCACCAGATG+GGG 0.645408 1.4:-61932375 MS.gene004828:CDS
TTGGGCACTTTGTTGCTGAG+TGG 0.651940 1.4:-61934182 MS.gene004828:CDS
TGCATGCAGTGTGATGAGAA+TGG 0.652881 1.4:-61933909 MS.gene004828:intron
CGATGCTGACCAATTAATAG+CGG 0.653035 1.4:+61933461 None:intergenic
TACATGGCTTGTCGATGCTG+TGG 0.655714 1.4:-61933160 MS.gene004828:CDS
TCATCAGAGCATCATTACTG+TGG 0.658251 1.4:-61933231 MS.gene004828:CDS
CCACTAGAGATCATTAAAGG+TGG 0.659295 1.4:+61932952 None:intergenic
GACACAATGTCTGATCTCAA+GGG 0.662661 1.4:-61932859 MS.gene004828:CDS
TCAGGACAAAGGCTGTGGAG+AGG 0.675886 1.4:-61932641 MS.gene004828:CDS
AATCACTGACAAAGAAGGCG+CGG 0.689942 1.4:-61932338 MS.gene004828:CDS
GACACAGTGTGTGAAAGGAT+CGG 0.690079 1.4:-61933351 MS.gene004828:CDS
CGGTGTAACCGATACTTGTG+TGG 0.693449 1.4:-61933331 MS.gene004828:CDS
AAGGGTAAAAGCTATGAGGG+AGG 0.696437 1.4:-61932841 MS.gene004828:CDS
CCTCAAAGTGAAATGTGATG+TGG 0.700192 1.4:-61933703 MS.gene004828:CDS
GTAGAAAAGGAAATAAACAA+GGG 0.702397 1.4:-61933191 MS.gene004828:CDS
CATCCCGTGCTAATGACGTG+GGG 0.703774 1.4:-61932892 MS.gene004828:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAGGAAAGATTTG+AGG + chr1.4:61932196-61932215 None:intergenic 20.0%
!! ATCACTGATAAGAAAAAATA+AGG + chr1.4:61932208-61932227 None:intergenic 20.0%
!! ATTAATCTAAAAATGTGCAT+AGG - chr1.4:61932478-61932497 MS.gene004828:CDS 20.0%
!! GGATTAAAGAATAAGAATAT+CGG - chr1.4:61933832-61933851 MS.gene004828:CDS 20.0%
!! TATATTGAACATGAATTTGA+AGG - chr1.4:61932262-61932281 MS.gene004828:CDS 20.0%
!!! TTCAATTATAGCTTTTACTT+TGG + chr1.4:61933989-61934008 None:intergenic 20.0%
! AAAGAAATGTTTAGGAGTTA+TGG - chr1.4:61933705-61933724 MS.gene004828:CDS 25.0%
! AATAGACTGAATAGTTATCA+TGG + chr1.4:61934535-61934554 None:intergenic 25.0%
! ATAGACTGAATAGTTATCAT+GGG + chr1.4:61934534-61934553 None:intergenic 25.0%
! ATCAATTTCAAGACCTTTAT+TGG + chr1.4:61933020-61933039 None:intergenic 25.0%
! CAAGTAATATTCAAAAAGAG+AGG - chr1.4:61932930-61932949 MS.gene004828:CDS 25.0%
! GTAGAAAAGGAAATAAACAA+GGG - chr1.4:61933572-61933591 MS.gene004828:CDS 25.0%
! TAAAGAAATGCAAGTCTAAT+AGG + chr1.4:61932716-61932735 None:intergenic 25.0%
! TCATTTCATCACAATTATTC+AGG - chr1.4:61934104-61934123 MS.gene004828:CDS 25.0%
! TGTAGAAAAGGAAATAAACA+AGG - chr1.4:61933571-61933590 MS.gene004828:CDS 25.0%
!! AAAGTACTTGTTCTTGAAAA+GGG - chr1.4:61933145-61933164 MS.gene004828:CDS 25.0%
!! CAAAGCTGAAAAGTTTATTT+TGG - chr1.4:61933654-61933673 MS.gene004828:CDS 25.0%
!! TCTTTTTATTGTGTTTGTGA+TGG - chr1.4:61932812-61932831 MS.gene004828:CDS 25.0%
!!! GTTTATTTTGGAGAATAACA+AGG - chr1.4:61933666-61933685 MS.gene004828:CDS 25.0%
AAATGTGATGTGGTAATTGT+CGG - chr1.4:61933070-61933089 MS.gene004828:CDS 30.0%
AATCCACTAGAGATCATTAA+AGG + chr1.4:61933817-61933836 None:intergenic 30.0%
AATGGAATTGAATAAGTTCG+TGG - chr1.4:61934311-61934330 MS.gene004828:intron 30.0%
AGAAGAATACAATAAGGCAA+AGG + chr1.4:61932748-61932767 None:intergenic 30.0%
ATAATTGAAACTCCTTCACT+AGG - chr1.4:61934000-61934019 MS.gene004828:intron 30.0%
ATCACAATTATTCAGGACAA+AGG - chr1.4:61934111-61934130 MS.gene004828:CDS 30.0%
ATGGATACTATCAACAAAGT+TGG - chr1.4:61932562-61932581 MS.gene004828:CDS 30.0%
ATTGAATAAGTTCGTGGAAT+CGG - chr1.4:61934317-61934336 MS.gene004828:intron 30.0%
ATTGTCAACATGATAACCAA+TGG + chr1.4:61932900-61932919 None:intergenic 30.0%
GACTGTTTGAGAAAAGTTTA+TGG - chr1.4:61932352-61932371 MS.gene004828:CDS 30.0%
GAGAAAAGGTTCTTCAAAAA+TGG - chr1.4:61932669-61932688 MS.gene004828:CDS 30.0%
GATAAGTTATTATCGTTGAG+AGG + chr1.4:61932425-61932444 None:intergenic 30.0%
GTGAGAAGAAAGAAATGTTT+AGG - chr1.4:61933697-61933716 MS.gene004828:CDS 30.0%
TCAAGAGAAGAAAAATCTCT+CGG + chr1.4:61933184-61933203 None:intergenic 30.0%
TCATAAAGCTCATTCAAAGA+GGG + chr1.4:61933211-61933230 None:intergenic 30.0%
TGATGAAAATGGACAAAGTT+GGG - chr1.4:61934449-61934468 MS.gene004828:intron 30.0%
TGGATACTATCAACAAAGTT+GGG - chr1.4:61932563-61932582 MS.gene004828:CDS 30.0%
TGTAACTATGGTTGTAGAAA+AGG - chr1.4:61933559-61933578 MS.gene004828:CDS 30.0%
TTATTATCGTTGAGAGGTTA+AGG + chr1.4:61932419-61932438 None:intergenic 30.0%
TTCATAAAGCTCATTCAAAG+AGG + chr1.4:61933212-61933231 None:intergenic 30.0%
TTCTTTGCAAAACAGAGAAA+AGG - chr1.4:61932655-61932674 MS.gene004828:CDS 30.0%
TTGATGAAAATGGACAAAGT+TGG - chr1.4:61934448-61934467 MS.gene004828:intron 30.0%
TTTCAAGAACAAGTACTTTG+AGG + chr1.4:61933144-61933163 None:intergenic 30.0%
! AGAGATTTTTCTTCTCTTGA+AGG - chr1.4:61933184-61933203 MS.gene004828:CDS 30.0%
! CAAAGTACTTGTTCTTGAAA+AGG - chr1.4:61933144-61933163 MS.gene004828:CDS 30.0%
! TTGAATGAGCTTTATGAACT+AGG - chr1.4:61933214-61933233 MS.gene004828:CDS 30.0%
! TTGTAGTGGAACTAATGAAA+TGG - chr1.4:61934293-61934312 MS.gene004828:intron 30.0%
! TTTGAGAAGTTGTTGATGAA+AGG + chr1.4:61932632-61932651 None:intergenic 30.0%
!! ATTTTGGAGAATAACAAGGA+AGG - chr1.4:61933670-61933689 MS.gene004828:CDS 30.0%
!! CACATTGAAAATTCAAGTTG+AGG - chr1.4:61933750-61933769 MS.gene004828:CDS 30.0%
AAAGCAACAATCTCATCATG+TGG - chr1.4:61933775-61933794 MS.gene004828:CDS 35.0%
AACTTATCAGCATGCATGTA+TGG - chr1.4:61932437-61932456 MS.gene004828:CDS 35.0%
ATAGGAATCACTGACAAAGA+AGG - chr1.4:61934420-61934439 MS.gene004828:intron 35.0%
CAAGTTTCTTGATGTGACAT+TGG + chr1.4:61934360-61934379 None:intergenic 35.0%
CAATCTGTTAGCACATAATC+CGG + chr1.4:61933337-61933356 None:intergenic 35.0%
CAATGTCACATCAAGAAACT+TGG - chr1.4:61934358-61934377 MS.gene004828:intron 35.0%
CCTGAGAGAAGAATACAATA+AGG + chr1.4:61932754-61932773 None:intergenic 35.0%
CCTTATTGTATTCTTCTCTC+AGG - chr1.4:61932751-61932770 MS.gene004828:CDS 35.0%
CCTTTATTGGAAAGAGATTG+CGG + chr1.4:61933007-61933026 None:intergenic 35.0%
GGAAAAATAGTTCTTCTTGC+AGG - chr1.4:61933259-61933278 MS.gene004828:CDS 35.0%
GTATCCATAGAATCACTCTA+AGG + chr1.4:61932550-61932569 None:intergenic 35.0%
TACTCCTTAGAGTGATTCTA+TGG - chr1.4:61932543-61932562 MS.gene004828:CDS 35.0%
TACTGTGGTTCTTGTAACTA+TGG - chr1.4:61933547-61933566 MS.gene004828:CDS 35.0%
TGATGCTCTGATGAATTTCT+CGG + chr1.4:61933526-61933545 None:intergenic 35.0%
! AATAGTGGAAGCTATGAATG+AGG - chr1.4:61932967-61932986 MS.gene004828:CDS 35.0%
! AATGAGCTTTATGAACTAGG+AGG - chr1.4:61933217-61933236 MS.gene004828:CDS 35.0%
! ACATGATGAGATTGTTGCTT+TGG + chr1.4:61933776-61933795 None:intergenic 35.0%
! AGTTTGTTTCCAACTGCAAT+AGG - chr1.4:61934501-61934520 MS.gene004828:intron 35.0%
! ATTTTCTACCGTGATTCCTT+GGG - chr1.4:61934032-61934051 MS.gene004828:CDS 35.0%
! CAAGTTCGTTACAACCTTTT+CGG + chr1.4:61933483-61933502 None:intergenic 35.0%
! CTAAGGAGTATAACTACTTC+TGG + chr1.4:61932533-61932552 None:intergenic 35.0%
!! TCTTTCTTTGAAGTCGAATC+CGG + chr1.4:61934061-61934080 None:intergenic 35.0%
AAAAAGAGAGGCCTCTTGAA+AGG - chr1.4:61932942-61932961 MS.gene004828:CDS 40.0%
AAAAGAGAGGCCTCTTGAAA+GGG - chr1.4:61932943-61932962 MS.gene004828:CDS 40.0%
AGAATGGTGAAAACCAAGCA+TGG - chr1.4:61932870-61932889 MS.gene004828:CDS 40.0%
ATCGACAAGCCATGTAACAT+CGG + chr1.4:61933599-61933618 None:intergenic 40.0%
ATTATTCAGGACAAAGGCTG+TGG - chr1.4:61934117-61934136 MS.gene004828:CDS 40.0%
CAGAATCAAGTTCTCCGAAA+AGG - chr1.4:61933466-61933485 MS.gene004828:CDS 40.0%
CCACATCACATTTCACTTTG+AGG + chr1.4:61933063-61933082 None:intergenic 40.0%
CCACCTTTAATGATCTCTAG+TGG - chr1.4:61933811-61933830 MS.gene004828:CDS 40.0%
CCACTAGAGATCATTAAAGG+TGG + chr1.4:61933814-61933833 None:intergenic 40.0%
CCAGGAATATCTTTCTGCTA+TGG - chr1.4:61933390-61933409 MS.gene004828:CDS 40.0%
CCATAGCAGAAAGATATTCC+TGG + chr1.4:61933393-61933412 None:intergenic 40.0%
CCGCAATCTCTTTCCAATAA+AGG - chr1.4:61933004-61933023 MS.gene004828:CDS 40.0%
CCTCAAAGTGAAATGTGATG+TGG - chr1.4:61933060-61933079 MS.gene004828:CDS 40.0%
CGAAAAGGTTGTAACGAACT+TGG - chr1.4:61933481-61933500 MS.gene004828:CDS 40.0%
CGATGCTGACCAATTAATAG+CGG + chr1.4:61933305-61933324 None:intergenic 40.0%
CGGATTATGTGCTAACAGAT+TGG - chr1.4:61933335-61933354 MS.gene004828:CDS 40.0%
CTCAAGGGTAAAAGCTATGA+GGG - chr1.4:61933919-61933938 MS.gene004828:intron 40.0%
CTCTCTGTCTGACTAAGAAA+TGG - chr1.4:61932606-61932625 MS.gene004828:CDS 40.0%
GAATGGTGAAAACCAAGCAT+GGG - chr1.4:61932871-61932890 MS.gene004828:CDS 40.0%
GACAAAGAGAACATGAAGCA+TGG - chr1.4:61934189-61934208 MS.gene004828:CDS 40.0%
GACACAATGTCTGATCTCAA+GGG - chr1.4:61933904-61933923 MS.gene004828:intron 40.0%
GGACAGAGAATTGTTTGTAG+TGG - chr1.4:61934279-61934298 MS.gene004828:intron 40.0%
GGATTGATACCTATTGCAGT+TGG + chr1.4:61934513-61934532 None:intergenic 40.0%
TCCTTCAACCACACAAGTAT+CGG + chr1.4:61933443-61933462 None:intergenic 40.0%
TCTCAAGGGTAAAAGCTATG+AGG - chr1.4:61933918-61933937 MS.gene004828:intron 40.0%
TCTTATCAGTGATGAGTTGC+AGG - chr1.4:61932215-61932234 MS.gene004828:CDS 40.0%
TTGAGATCAGACATTGTGTC+CGG + chr1.4:61933904-61933923 None:intergenic 40.0%
! AGGAGGAACTTTTGCAACAT+CGG - chr1.4:61933234-61933253 MS.gene004828:CDS 40.0%
! CATTTTCTACCGTGATTCCT+TGG - chr1.4:61934031-61934050 MS.gene004828:CDS 40.0%
! TATTCCTGGCTTGAAAAGAG+TGG + chr1.4:61933379-61933398 None:intergenic 40.0%
! TCATCAGAGCATCATTACTG+TGG - chr1.4:61933532-61933551 MS.gene004828:CDS 40.0%
!! CCAAGAGAATTGCACTGATT+CGG - chr1.4:61934568-61934587 MS.gene004828:CDS 40.0%
!! GTCAGCATCGATTAAAACAC+CGG - chr1.4:61933315-61933334 MS.gene004828:CDS 40.0%
AAAGAGAGGCCTCTTGAAAG+GGG - chr1.4:61932944-61932963 MS.gene004828:CDS 45.0%
AACAAGGGACCGATGTTACA+TGG - chr1.4:61933587-61933606 MS.gene004828:CDS 45.0%
AAGGGTAAAAGCTATGAGGG+AGG - chr1.4:61933922-61933941 MS.gene004828:intron 45.0%
AATCACTGACAAAGAAGGCG+CGG - chr1.4:61934425-61934444 MS.gene004828:intron 45.0%
ACCGATACTTGTGTGGTTGA+AGG - chr1.4:61933439-61933458 MS.gene004828:CDS 45.0%
AGAGATCATTAAAGGTGGCG+TGG + chr1.4:61933809-61933828 None:intergenic 45.0%
ATCACGGTAGAAAATGCTCC+TGG + chr1.4:61934027-61934046 None:intergenic 45.0%
CCGAATCAGTGCAATTCTCT+TGG + chr1.4:61934571-61934590 None:intergenic 45.0%
CTATGGACACAGTGTGTGAA+AGG - chr1.4:61933407-61933426 MS.gene004828:CDS 45.0%
CTGAGGATACTAATAGCAGC+TGG - chr1.4:61934225-61934244 MS.gene004828:CDS 45.0%
CTTCTTGCAGGTTCAACAGT+TGG - chr1.4:61933271-61933290 MS.gene004828:CDS 45.0%
GACACAGTGTGTGAAAGGAT+CGG - chr1.4:61933412-61933431 MS.gene004828:CDS 45.0%
GATACTAATAGCAGCTGGAG+CGG - chr1.4:61934230-61934249 MS.gene004828:CDS 45.0%
GGACACAATGTCTGATCTCA+AGG - chr1.4:61933903-61933922 MS.gene004828:CDS 45.0%
GTAGGTACTCACAGAAGTGA+TGG - chr1.4:61934258-61934277 MS.gene004828:CDS 45.0%
GTGGTGGTTCCGCTATTAAT+TGG - chr1.4:61933293-61933312 MS.gene004828:CDS 45.0%
TATGCATCTGCTCACCAGAT+GGG - chr1.4:61934387-61934406 MS.gene004828:intron 45.0%
TCCACTATTCCCCTTTCAAG+AGG + chr1.4:61932956-61932975 None:intergenic 45.0%
TGCATGCAGTGTGATGAGAA+TGG - chr1.4:61932854-61932873 MS.gene004828:CDS 45.0%
TTAGCACGGGATGAAGATGA+AGG + chr1.4:61933864-61933883 None:intergenic 45.0%
! AATGACGTGGGGACATTTTC+CGG - chr1.4:61933882-61933901 MS.gene004828:CDS 45.0%
! GGAACTTTTGCAACATCGGA+TGG - chr1.4:61933238-61933257 MS.gene004828:CDS 45.0%
!! GATGTGGTAATTGTCGGTTC+CGG - chr1.4:61933076-61933095 MS.gene004828:CDS 45.0%
!! TCTACCACTCTTTTCAAGCC+AGG - chr1.4:61933372-61933391 MS.gene004828:CDS 45.0%
AACCAAGCATGGGAAGCCAT+TGG - chr1.4:61932881-61932900 MS.gene004828:CDS 50.0%
AACCAATGGCTTCCCATGCT+TGG + chr1.4:61932886-61932905 None:intergenic 50.0%
AAGTCGAATCCGGATTCCCA+AGG + chr1.4:61934051-61934070 None:intergenic 50.0%
AATGCTCCTGGTCCTAGTGA+AGG + chr1.4:61934015-61934034 None:intergenic 50.0%
ACCGTGATTCCTTGGGAATC+CGG - chr1.4:61934039-61934058 MS.gene004828:CDS 50.0%
ATGCATCTGCTCACCAGATG+GGG - chr1.4:61934388-61934407 MS.gene004828:intron 50.0%
ATGTCCCCACGTCATTAGCA+CGG + chr1.4:61933878-61933897 None:intergenic 50.0%
CAGATGGGGAGTTGTAGGAT+AGG - chr1.4:61934402-61934421 MS.gene004828:intron 50.0%
CGGTGTAACCGATACTTGTG+TGG - chr1.4:61933432-61933451 MS.gene004828:CDS 50.0%
CTATCCTACAACTCCCCATC+TGG + chr1.4:61934404-61934423 None:intergenic 50.0%
CTTGCAGGTTCAACAGTTGG+TGG - chr1.4:61933274-61933293 MS.gene004828:CDS 50.0%
CTTGTCGATGCTGTGGAACA+CGG - chr1.4:61933610-61933629 MS.gene004828:CDS 50.0%
GAAACTCCTTCACTAGGACC+AGG - chr1.4:61934006-61934025 MS.gene004828:intron 50.0%
GCCTCTTGAAAGGGGAATAG+TGG - chr1.4:61932952-61932971 MS.gene004828:CDS 50.0%
GCTGCTGTTCTTGCAAGTTC+AGG - chr1.4:61933118-61933137 MS.gene004828:CDS 50.0%
GGACAAAGTTGGGAAGCTGA+AGG - chr1.4:61934459-61934478 MS.gene004828:intron 50.0%
GTATGCATCTGCTCACCAGA+TGG - chr1.4:61934386-61934405 MS.gene004828:intron 50.0%
TCATCCCGTGCTAATGACGT+GGG - chr1.4:61933870-61933889 MS.gene004828:CDS 50.0%
TCCGGATTCCCAAGGAATCA+CGG + chr1.4:61934043-61934062 None:intergenic 50.0%
TTCATCCCGTGCTAATGACG+TGG - chr1.4:61933869-61933888 MS.gene004828:CDS 50.0%
TTGGGCACTTTGTTGCTGAG+TGG - chr1.4:61932581-61932600 MS.gene004828:CDS 50.0%
! ACATGAAGCATGGACTGCAG+CGG - chr1.4:61934199-61934218 MS.gene004828:CDS 50.0%
! CGGGATGAAGATGAAGGTGT+CGG + chr1.4:61933858-61933877 None:intergenic 50.0%
! TACATGGCTTGTCGATGCTG+TGG - chr1.4:61933603-61933622 MS.gene004828:CDS 50.0%
!! GAAGGCGCGGTTGATGAAAA+TGG - chr1.4:61934438-61934457 MS.gene004828:intron 50.0%
!! GTAATTGTCGGTTCCGGTTG+CGG - chr1.4:61933082-61933101 MS.gene004828:CDS 50.0%
AATAGCAGCTGGAGCGGTTG+AGG - chr1.4:61934236-61934255 MS.gene004828:CDS 55.0%
CATCCCGTGCTAATGACGTG+GGG - chr1.4:61933871-61933890 MS.gene004828:CDS 55.0%
CTCACCAGATGGGGAGTTGT+AGG - chr1.4:61934397-61934416 MS.gene004828:intron 55.0%
TCAGGACAAAGGCTGTGGAG+AGG - chr1.4:61934122-61934141 MS.gene004828:CDS 55.0%
TGTCCCCACGTCATTAGCAC+GGG + chr1.4:61933877-61933896 None:intergenic 55.0%
TGTGGAGAGGTGAAGAGCGA+GGG - chr1.4:61934135-61934154 MS.gene004828:CDS 55.0%
! CATGAAGCATGGACTGCAGC+GGG - chr1.4:61934200-61934219 MS.gene004828:CDS 55.0%
!! GAATCGGTTTGCGCAGCAGA+AGG - chr1.4:61934333-61934352 MS.gene004828:intron 55.0%
!! GCAGGTTCAACAGTTGGTGG+TGG - chr1.4:61933277-61933296 MS.gene004828:CDS 55.0%
CTGTGGAGAGGTGAAGAGCG+AGG - chr1.4:61934134-61934153 MS.gene004828:CDS 60.0%
GAGAGGTGAAGAGCGAGGGT+AGG - chr1.4:61934139-61934158 MS.gene004828:CDS 60.0%
TGCAACTCCTCCACCGCAAC+CGG + chr1.4:61933098-61933117 None:intergenic 60.0%
!! ATTGTCGGTTCCGGTTGCGG+TGG - chr1.4:61933085-61933104 MS.gene004828:CDS 60.0%
GCAGCTGGAGCGGTTGAGGT+AGG - chr1.4:61934240-61934259 MS.gene004828:CDS 65.0%
! ATGGACTGCAGCGGGCGCTG+AGG - chr1.4:61934208-61934227 MS.gene004828:CDS 70.0%
! GTCGGTTCCGGTTGCGGTGG+AGG - chr1.4:61933088-61933107 MS.gene004828:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 61932186 61934599 61932186 ID=MS.gene004828
chr1.4 mRNA 61932186 61934599 61932186 ID=MS.gene004828.t1;Parent=MS.gene004828
chr1.4 exon 61934549 61934599 61934549 ID=MS.gene004828.t1.exon1;Parent=MS.gene004828.t1
chr1.4 CDS 61934549 61934599 61934549 ID=cds.MS.gene004828.t1;Parent=MS.gene004828.t1
chr1.4 exon 61934013 61934285 61934013 ID=MS.gene004828.t1.exon2;Parent=MS.gene004828.t1
chr1.4 CDS 61934013 61934285 61934013 ID=cds.MS.gene004828.t1;Parent=MS.gene004828.t1
chr1.4 exon 61932186 61933922 61932186 ID=MS.gene004828.t1.exon3;Parent=MS.gene004828.t1
chr1.4 CDS 61932186 61933922 61932186 ID=cds.MS.gene004828.t1;Parent=MS.gene004828.t1
Gene Sequence

>MS.gene004828

ATGGATACCTCAAATCTTTCCTTATTTTTTCTTATCAGTGATGAGTTGCAGGTGAGTTTGTGTTCTTGTTTGCTTCTATATTGAACATGAATTTGAAGGTTACAAATGAGTGTTAATTTCTATTATGTGCATGTCTTTTGACAAAATAGTTGTTTTAAATATATAAGACTGTTTGAGAAAAGTTTATGGAAACAACTTATGTTATGTTTGTAAGTTTTTTAAGCTTACTTCCTTAACCTCTCAACGATAATAACTTATCAGCATGCATGTATGGTTATGATATTTTCAAATAATTAATCTAAAAATGTGCATAGGTTGCAGAGATAATAATTGAAAGAGCACTGCCAGAAGTAGTTATACTCCTTAGAGTGATTCTATGGATACTATCAACAAAGTTGGGCACTTTGTTGCTGAGTGGATCTCTCTGTCTGACTAAGAAATGGCCTTTCATCAACAACTTCTCAAATATTTCTTTGCAAAACAGAGAAAAGGTTCTTCAAAAATGGTTCAAGCATCGATTTTTCACACCTATTAGACTTGCATTTCTTTACGTCAAAATCCTTTGCCTTATTGTATTCTTCTCTCAGGTAATGCTACGTTCTTCATTCACAAACTCTTAGCAATGTTCTTTTTATTGTGTTTGTGATGGAATATTCACATTACTTGTATGCATGCAGTGTGATGAGAATGGTGAAAACCAAGCATGGGAAGCCATTGGTTATCATGTTGACAATGATGAGAACACAAGTAATATTCAAAAAGAGAGGCCTCTTGAAAGGGGAATAGTGGAAGCTATGAATGAGGATGATTTGAGTCTGCCGCAATCTCTTTCCAATAAAGGTCTTGAAATTGATATAGATGCTAATAACAACATCCTCAAAGTGAAATGTGATGTGGTAATTGTCGGTTCCGGTTGCGGTGGAGGAGTTGCAGCTGCTGTTCTTGCAAGTTCAGGCCTCAAAGTACTTGTTCTTGAAAAGGGTAACTATTTTACTCCGAGAGATTTTTCTTCTCTTGAAGGTCCCTCTTTGAATGAGCTTTATGAACTAGGAGGAACTTTTGCAACATCGGATGGAAAAATAGTTCTTCTTGCAGGTTCAACAGTTGGTGGTGGTTCCGCTATTAATTGGTCAGCATCGATTAAAACACCGGATTATGTGCTAACAGATTGGTCAGAGAATCATAATCTACCACTCTTTTCAAGCCAGGAATATCTTTCTGCTATGGACACAGTGTGTGAAAGGATCGGTGTAACCGATACTTGTGTGGTTGAAGGACTTCAGAATCAAGTTCTCCGAAAAGGTTGTAACGAACTTGGTCTTCAAGTAGATTATGTGCCGAGAAATTCATCAGAGCATCATTACTGTGGTTCTTGTAACTATGGTTGTAGAAAAGGAAATAAACAAGGGACCGATGTTACATGGCTTGTCGATGCTGTGGAACACGGTGCTGTAATACTAACAAGATGCAAAGCTGAAAAGTTTATTTTGGAGAATAACAAGGAAGGATGTGTGAGAAGAAAGAAATGTTTAGGAGTTATGGCAAATGTTTTAACAGAAAACATCACATTGAAAATTCAAGTTGAGGCCAAAGCAACAATCTCATCATGTGGAGCACTTTCCACGCCACCTTTAATGATCTCTAGTGGATTAAAGAATAAGAATATCGGCCGACACCTTCATCTTCATCCCGTGCTAATGACGTGGGGACATTTTCCGGACACAATGTCTGATCTCAAGGGTAAAAGCTATGAGGGAGGAATAATAACTTCTGTACACAAAGTGTTATCAGATGAAGACTCCAAAGTAAAAGCTATAATTGAAACTCCTTCACTAGGACCAGGAGCATTTTCTACCGTGATTCCTTGGGAATCCGGATTCGACTTCAAAGAAAGAATGCTAAGATATTCAAGAACTGTTCATTTCATCACAATTATTCAGGACAAAGGCTGTGGAGAGGTGAAGAGCGAGGGTAGGATCAAGTATGAGTTAGATGAAGAATTTGACAAAGAGAACATGAAGCATGGACTGCAGCGGGCGCTGAGGATACTAATAGCAGCTGGAGCGGTTGAGGTAGGTACTCACAGAAGTGATGGACAGAGAATTGTTTGTAGTGGAACTAATGAAATGGAATTGAATAAGTTCGTGGAATCGGTTTGCGCAGCAGAAGGACCAATGTCACATCAAGAAACTTGGAATATGTATGCATCTGCTCACCAGATGGGGAGTTGTAGGATAGGAATCACTGACAAAGAAGGCGCGGTTGATGAAAATGGACAAAGTTGGGAAGCTGAAGGACTATTTGTGTGTGATGCAAGTTTGTTTCCAACTGCAATAGGTATCAATCCCATGATAACTATTCAGTCTATTGCATATTGTGTTGCCAAGAGAATTGCACTGATTCGGAGAAAATAG

Protein sequence

>MS.gene004828.t1

MDTSNLSLFFLISDELQVAEIIIERALPEVVILLRVILWILSTKLGTLLLSGSLCLTKKWPFINNFSNISLQNREKVLQKWFKHRFFTPIRLAFLYVKILCLIVFFSQCDENGENQAWEAIGYHVDNDENTSNIQKERPLERGIVEAMNEDDLSLPQSLSNKGLEIDIDANNNILKVKCDVVIVGSGCGGGVAAAVLASSGLKVLVLEKGNYFTPRDFSSLEGPSLNELYELGGTFATSDGKIVLLAGSTVGGGSAINWSASIKTPDYVLTDWSENHNLPLFSSQEYLSAMDTVCERIGVTDTCVVEGLQNQVLRKGCNELGLQVDYVPRNSSEHHYCGSCNYGCRKGNKQGTDVTWLVDAVEHGAVILTRCKAEKFILENNKEGCVRRKKCLGVMANVLTENITLKIQVEAKATISSCGALSTPPLMISSGLKNKNIGRHLHLHPVLMTWGHFPDTMSDLKGKSYEGGIITSVHKVLSDEDSKVKAIIETPSLGPGAFSTVIPWESGFDFKERMLRYSRTVHFITIIQDKGCGEVKSEGRIKYELDEEFDKENMKHGLQRALRILIAAGAVEVGTHRSDGQRIVCSGTNEMELNKFVESVCAAEGPMSHQETWNMYASAHQMGSCRIGITDKEGAVDENGQSWEAEGLFVCDASLFPTAIGINPMITIQSIAYCVAKRIALIRRK