Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004828.t1 | XP_004495357.1 | 84 | 669 | 106 | 1 | 17 | 685 | 76 | 743 | 0.00E+00 | 1159.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004828.t1 | B5WWZ8 | 67.5 | 667 | 213 | 2 | 17 | 680 | 75 | 740 | 1.1e-273 | 943.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004828.t1 | A0A1S2XW11 | 84.0 | 669 | 106 | 1 | 17 | 685 | 76 | 743 | 0.0e+00 | 1159.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene004828 | MS.gene067993 | PPI |
MS.gene83396 | MS.gene004828 | PPI |
MS.gene004828 | MS.gene86456 | PPI |
MS.gene004828 | MS.gene82452 | PPI |
MS.gene82943 | MS.gene004828 | PPI |
MS.gene82942 | MS.gene004828 | PPI |
MS.gene004828 | MS.gene056569 | PPI |
MS.gene72746 | MS.gene004828 | PPI |
MS.gene72745 | MS.gene004828 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004828.t1 | MTR_1g075650 | 89.062 | 576 | 21 | 3 | 110 | 685 | 3 | 536 | 0.0 | 1038 |
MS.gene004828.t1 | MTR_4g080823 | 63.897 | 698 | 237 | 7 | 3 | 686 | 63 | 759 | 0.0 | 897 |
MS.gene004828.t1 | MTR_4g080890 | 65.306 | 686 | 226 | 7 | 10 | 686 | 68 | 750 | 0.0 | 891 |
MS.gene004828.t1 | MTR_7g097210 | 57.956 | 685 | 275 | 6 | 5 | 681 | 52 | 731 | 0.0 | 786 |
MS.gene004828.t1 | MTR_0651s0010 | 64.214 | 598 | 200 | 6 | 3 | 587 | 54 | 650 | 0.0 | 757 |
MS.gene004828.t1 | MTR_7g097210 | 60.708 | 565 | 216 | 5 | 118 | 681 | 2 | 561 | 0.0 | 685 |
MS.gene004828.t1 | MTR_5g025650 | 43.324 | 734 | 359 | 13 | 2 | 686 | 103 | 828 | 0.0 | 560 |
MS.gene004828.t1 | MTR_8g072210 | 43.732 | 686 | 336 | 13 | 42 | 686 | 133 | 809 | 4.27e-178 | 528 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004828.t1 | AT3G23410 | 60.714 | 672 | 253 | 6 | 17 | 681 | 70 | 737 | 0.0 | 822 |
MS.gene004828.t1 | AT3G23410 | 60.624 | 673 | 254 | 6 | 16 | 681 | 1 | 669 | 0.0 | 820 |
MS.gene004828.t1 | AT4G28570 | 56.185 | 671 | 285 | 5 | 17 | 680 | 70 | 738 | 0.0 | 754 |
MS.gene004828.t1 | AT4G28570 | 56.185 | 671 | 285 | 5 | 17 | 680 | 70 | 738 | 0.0 | 754 |
MS.gene004828.t1 | AT1G03990 | 52.000 | 675 | 316 | 5 | 17 | 686 | 83 | 754 | 0.0 | 718 |
MS.gene004828.t1 | AT4G19380 | 43.966 | 696 | 350 | 13 | 17 | 686 | 85 | 766 | 0.0 | 544 |
MS.gene004828.t1 | AT4G19380 | 43.966 | 696 | 350 | 13 | 17 | 686 | 43 | 724 | 0.0 | 544 |
Find 145 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAATTTCAAGACCTTTAT+TGG | 0.059318 | 1.4:+61933746 | None:intergenic |
CAAAGCTGAAAAGTTTATTT+TGG | 0.172640 | 1.4:-61933109 | MS.gene004828:CDS |
TCATTTCATCACAATTATTC+AGG | 0.270130 | 1.4:-61932659 | MS.gene004828:CDS |
AATCCACTAGAGATCATTAA+AGG | 0.281307 | 1.4:+61932949 | None:intergenic |
TACTGTGGTTCTTGTAACTA+TGG | 0.298645 | 1.4:-61933216 | MS.gene004828:CDS |
ACATGATGAGATTGTTGCTT+TGG | 0.307255 | 1.4:+61932990 | None:intergenic |
GAAGGCGCGGTTGATGAAAA+TGG | 0.308832 | 1.4:-61932325 | MS.gene004828:CDS |
CTAAGGAGTATAACTACTTC+TGG | 0.331620 | 1.4:+61934233 | None:intergenic |
TCTTATCAGTGATGAGTTGC+AGG | 0.336858 | 1.4:-61934548 | MS.gene004828:intron |
TGCAACTCCTCCACCGCAAC+CGG | 0.337562 | 1.4:+61933668 | None:intergenic |
GCTGCTGTTCTTGCAAGTTC+AGG | 0.339077 | 1.4:-61933645 | MS.gene004828:CDS |
AAAGAAATGTTTAGGAGTTA+TGG | 0.342167 | 1.4:-61933058 | MS.gene004828:CDS |
CAAAGTACTTGTTCTTGAAA+AGG | 0.354993 | 1.4:-61933619 | MS.gene004828:CDS |
TACTCCTTAGAGTGATTCTA+TGG | 0.357436 | 1.4:-61934220 | MS.gene004828:CDS |
GTCGGTTCCGGTTGCGGTGG+AGG | 0.360501 | 1.4:-61933675 | MS.gene004828:CDS |
TAAAGAAATGCAAGTCTAAT+AGG | 0.370907 | 1.4:+61934050 | None:intergenic |
AGTTTGTTTCCAACTGCAAT+AGG | 0.371971 | 1.4:-61932262 | MS.gene004828:CDS |
ACCGTGATTCCTTGGGAATC+CGG | 0.373513 | 1.4:-61932724 | MS.gene004828:CDS |
TGTAACTATGGTTGTAGAAA+AGG | 0.378475 | 1.4:-61933204 | MS.gene004828:CDS |
CCACATCACATTTCACTTTG+AGG | 0.379505 | 1.4:+61933703 | None:intergenic |
CCGCAATCTCTTTCCAATAA+AGG | 0.385176 | 1.4:-61933759 | MS.gene004828:CDS |
GTGGTGGTTCCGCTATTAAT+TGG | 0.387119 | 1.4:-61933470 | MS.gene004828:CDS |
CTCACCAGATGGGGAGTTGT+AGG | 0.393313 | 1.4:-61932366 | MS.gene004828:CDS |
GTGAGAAGAAAGAAATGTTT+AGG | 0.399497 | 1.4:-61933066 | MS.gene004828:CDS |
CCTTATTGTATTCTTCTCTC+AGG | 0.411125 | 1.4:-61934012 | MS.gene004828:intron |
AAAGTACTTGTTCTTGAAAA+GGG | 0.411239 | 1.4:-61933618 | MS.gene004828:CDS |
TTTCAAGAACAAGTACTTTG+AGG | 0.415676 | 1.4:+61933622 | None:intergenic |
ATTGAATAAGTTCGTGGAAT+CGG | 0.417093 | 1.4:-61932446 | MS.gene004828:CDS |
ATGGATACTATCAACAAAGT+TGG | 0.417935 | 1.4:-61934201 | MS.gene004828:CDS |
CAATGTCACATCAAGAAACT+TGG | 0.418548 | 1.4:-61932405 | MS.gene004828:CDS |
GCCTCTTGAAAGGGGAATAG+TGG | 0.419077 | 1.4:-61933811 | MS.gene004828:CDS |
AACCAATGGCTTCCCATGCT+TGG | 0.429321 | 1.4:+61933880 | None:intergenic |
CCTGAGAGAAGAATACAATA+AGG | 0.430373 | 1.4:+61934012 | None:intergenic |
CTATCCTACAACTCCCCATC+TGG | 0.432987 | 1.4:+61932362 | None:intergenic |
TCTTTCTTTGAAGTCGAATC+CGG | 0.438032 | 1.4:+61932705 | None:intergenic |
CTTCTTGCAGGTTCAACAGT+TGG | 0.438729 | 1.4:-61933492 | MS.gene004828:CDS |
CTTGCAGGTTCAACAGTTGG+TGG | 0.439522 | 1.4:-61933489 | MS.gene004828:CDS |
TGATGCTCTGATGAATTTCT+CGG | 0.439798 | 1.4:+61933240 | None:intergenic |
TTGAATGAGCTTTATGAACT+AGG | 0.441032 | 1.4:-61933549 | MS.gene004828:CDS |
CCAAGAGAATTGCACTGATT+CGG | 0.441462 | 1.4:-61932195 | MS.gene004828:CDS |
CTCTCTGTCTGACTAAGAAA+TGG | 0.442240 | 1.4:-61934157 | MS.gene004828:CDS |
CGAAAAGGTTGTAACGAACT+TGG | 0.445062 | 1.4:-61933282 | MS.gene004828:CDS |
CCGAATCAGTGCAATTCTCT+TGG | 0.448817 | 1.4:+61932195 | None:intergenic |
AATAGACTGAATAGTTATCA+TGG | 0.450012 | 1.4:+61932231 | None:intergenic |
GTATCCATAGAATCACTCTA+AGG | 0.453819 | 1.4:+61934216 | None:intergenic |
TTGTAGTGGAACTAATGAAA+TGG | 0.455269 | 1.4:-61932470 | MS.gene004828:CDS |
CAGAATCAAGTTCTCCGAAA+AGG | 0.456324 | 1.4:-61933297 | MS.gene004828:CDS |
CCATAGCAGAAAGATATTCC+TGG | 0.468898 | 1.4:+61933373 | None:intergenic |
CGGATTATGTGCTAACAGAT+TGG | 0.473263 | 1.4:-61933428 | MS.gene004828:CDS |
AAAAGAGAGGCCTCTTGAAA+GGG | 0.473476 | 1.4:-61933820 | MS.gene004828:CDS |
CATGAAGCATGGACTGCAGC+GGG | 0.474651 | 1.4:-61932563 | MS.gene004828:CDS |
GTAATTGTCGGTTCCGGTTG+CGG | 0.477209 | 1.4:-61933681 | MS.gene004828:CDS |
CTGAGGATACTAATAGCAGC+TGG | 0.477632 | 1.4:-61932538 | MS.gene004828:CDS |
TTCTTTGCAAAACAGAGAAA+AGG | 0.480100 | 1.4:-61934108 | MS.gene004828:CDS |
AATAGCAGCTGGAGCGGTTG+AGG | 0.480128 | 1.4:-61932527 | MS.gene004828:CDS |
TGATGAAAATGGACAAAGTT+GGG | 0.482821 | 1.4:-61932314 | MS.gene004828:CDS |
TTTGAGAAGTTGTTGATGAA+AGG | 0.483652 | 1.4:+61934134 | None:intergenic |
CAAGTTTCTTGATGTGACAT+TGG | 0.487189 | 1.4:+61932406 | None:intergenic |
GCAGGTTCAACAGTTGGTGG+TGG | 0.495510 | 1.4:-61933486 | MS.gene004828:CDS |
CAATCTGTTAGCACATAATC+CGG | 0.496225 | 1.4:+61933429 | None:intergenic |
TCTCAAGGGTAAAAGCTATG+AGG | 0.496801 | 1.4:-61932845 | MS.gene004828:CDS |
GGATTAAAGAATAAGAATAT+CGG | 0.503081 | 1.4:-61932931 | MS.gene004828:CDS |
TGGATACTATCAACAAAGTT+GGG | 0.508773 | 1.4:-61934200 | MS.gene004828:CDS |
CCAGGAATATCTTTCTGCTA+TGG | 0.508865 | 1.4:-61933373 | MS.gene004828:CDS |
TTGATGAAAATGGACAAAGT+TGG | 0.532376 | 1.4:-61932315 | MS.gene004828:CDS |
TCCTTCAACCACACAAGTAT+CGG | 0.532686 | 1.4:+61933323 | None:intergenic |
GGATTGATACCTATTGCAGT+TGG | 0.535199 | 1.4:+61932253 | None:intergenic |
CACATTGAAAATTCAAGTTG+AGG | 0.538683 | 1.4:-61933013 | MS.gene004828:CDS |
TCCACTATTCCCCTTTCAAG+AGG | 0.539992 | 1.4:+61933810 | None:intergenic |
GGACACAATGTCTGATCTCA+AGG | 0.540207 | 1.4:-61932860 | MS.gene004828:CDS |
ATCACAATTATTCAGGACAA+AGG | 0.541062 | 1.4:-61932652 | MS.gene004828:CDS |
AATGGAATTGAATAAGTTCG+TGG | 0.543373 | 1.4:-61932452 | MS.gene004828:CDS |
TTGAGATCAGACATTGTGTC+CGG | 0.544200 | 1.4:+61932862 | None:intergenic |
ACCGATACTTGTGTGGTTGA+AGG | 0.546489 | 1.4:-61933324 | MS.gene004828:CDS |
TCCGGATTCCCAAGGAATCA+CGG | 0.548198 | 1.4:+61932723 | None:intergenic |
CTCAAGGGTAAAAGCTATGA+GGG | 0.548924 | 1.4:-61932844 | MS.gene004828:CDS |
AACAAGGGACCGATGTTACA+TGG | 0.551305 | 1.4:-61933176 | MS.gene004828:CDS |
TATGCATCTGCTCACCAGAT+GGG | 0.553951 | 1.4:-61932376 | MS.gene004828:CDS |
GAATCGGTTTGCGCAGCAGA+AGG | 0.554516 | 1.4:-61932430 | MS.gene004828:CDS |
GATGTGGTAATTGTCGGTTC+CGG | 0.558351 | 1.4:-61933687 | MS.gene004828:CDS |
AGAATGGTGAAAACCAAGCA+TGG | 0.558763 | 1.4:-61933893 | MS.gene004828:CDS |
GTATGCATCTGCTCACCAGA+TGG | 0.560838 | 1.4:-61932377 | MS.gene004828:CDS |
GCAGCTGGAGCGGTTGAGGT+AGG | 0.565339 | 1.4:-61932523 | MS.gene004828:CDS |
CCACCTTTAATGATCTCTAG+TGG | 0.569008 | 1.4:-61932952 | MS.gene004828:CDS |
ATTATTCAGGACAAAGGCTG+TGG | 0.571257 | 1.4:-61932646 | MS.gene004828:CDS |
AATAGTGGAAGCTATGAATG+AGG | 0.571988 | 1.4:-61933796 | MS.gene004828:CDS |
GAGAGGTGAAGAGCGAGGGT+AGG | 0.576606 | 1.4:-61932624 | MS.gene004828:CDS |
GTCAGCATCGATTAAAACAC+CGG | 0.576906 | 1.4:-61933448 | MS.gene004828:CDS |
ATAGGAATCACTGACAAAGA+AGG | 0.578028 | 1.4:-61932343 | MS.gene004828:CDS |
CTATGGACACAGTGTGTGAA+AGG | 0.583294 | 1.4:-61933356 | MS.gene004828:CDS |
AACCAAGCATGGGAAGCCAT+TGG | 0.585115 | 1.4:-61933882 | MS.gene004828:CDS |
ATCACGGTAGAAAATGCTCC+TGG | 0.585658 | 1.4:+61932739 | None:intergenic |
ATTGTCGGTTCCGGTTGCGG+TGG | 0.585797 | 1.4:-61933678 | MS.gene004828:CDS |
TTCATCCCGTGCTAATGACG+TGG | 0.588547 | 1.4:-61932894 | MS.gene004828:CDS |
AAATGTGATGTGGTAATTGT+CGG | 0.589360 | 1.4:-61933693 | MS.gene004828:CDS |
GTAGGTACTCACAGAAGTGA+TGG | 0.590039 | 1.4:-61932505 | MS.gene004828:CDS |
TTCATAAAGCTCATTCAAAG+AGG | 0.590225 | 1.4:+61933554 | None:intergenic |
ATAGACTGAATAGTTATCAT+GGG | 0.590238 | 1.4:+61932232 | None:intergenic |
TCATAAAGCTCATTCAAAGA+GGG | 0.592604 | 1.4:+61933555 | None:intergenic |
CAGATGGGGAGTTGTAGGAT+AGG | 0.592630 | 1.4:-61932361 | MS.gene004828:CDS |
TGTCCCCACGTCATTAGCAC+GGG | 0.592912 | 1.4:+61932889 | None:intergenic |
CCTTTATTGGAAAGAGATTG+CGG | 0.595401 | 1.4:+61933759 | None:intergenic |
GGACAGAGAATTGTTTGTAG+TGG | 0.596435 | 1.4:-61932484 | MS.gene004828:CDS |
TGTGGAGAGGTGAAGAGCGA+GGG | 0.597034 | 1.4:-61932628 | MS.gene004828:CDS |
ATGTCCCCACGTCATTAGCA+CGG | 0.598867 | 1.4:+61932888 | None:intergenic |
AAGTCGAATCCGGATTCCCA+AGG | 0.600974 | 1.4:+61932715 | None:intergenic |
ATTGTCAACATGATAACCAA+TGG | 0.604094 | 1.4:+61933866 | None:intergenic |
CTTGTCGATGCTGTGGAACA+CGG | 0.606706 | 1.4:-61933153 | MS.gene004828:CDS |
ATGGACTGCAGCGGGCGCTG+AGG | 0.607128 | 1.4:-61932555 | MS.gene004828:CDS |
GACAAAGAGAACATGAAGCA+TGG | 0.609245 | 1.4:-61932574 | MS.gene004828:CDS |
AGAAGAATACAATAAGGCAA+AGG | 0.611697 | 1.4:+61934018 | None:intergenic |
TCATCCCGTGCTAATGACGT+GGG | 0.611801 | 1.4:-61932893 | MS.gene004828:CDS |
GAATGGTGAAAACCAAGCAT+GGG | 0.613187 | 1.4:-61933892 | MS.gene004828:CDS |
CTGTGGAGAGGTGAAGAGCG+AGG | 0.615354 | 1.4:-61932629 | MS.gene004828:CDS |
AATGAGCTTTATGAACTAGG+AGG | 0.619554 | 1.4:-61933546 | MS.gene004828:CDS |
TTAGCACGGGATGAAGATGA+AGG | 0.622006 | 1.4:+61932902 | None:intergenic |
AGAGATCATTAAAGGTGGCG+TGG | 0.622955 | 1.4:+61932957 | None:intergenic |
GAAACTCCTTCACTAGGACC+AGG | 0.624328 | 1.4:-61932757 | MS.gene004828:CDS |
AAAGCAACAATCTCATCATG+TGG | 0.629269 | 1.4:-61932988 | MS.gene004828:CDS |
TGTAGAAAAGGAAATAAACA+AGG | 0.630244 | 1.4:-61933192 | MS.gene004828:CDS |
AATGCTCCTGGTCCTAGTGA+AGG | 0.631108 | 1.4:+61932751 | None:intergenic |
AAAGAGAGGCCTCTTGAAAG+GGG | 0.631245 | 1.4:-61933819 | MS.gene004828:CDS |
GATACTAATAGCAGCTGGAG+CGG | 0.631509 | 1.4:-61932533 | MS.gene004828:CDS |
ATCGACAAGCCATGTAACAT+CGG | 0.634021 | 1.4:+61933167 | None:intergenic |
ACATGAAGCATGGACTGCAG+CGG | 0.635189 | 1.4:-61932564 | MS.gene004828:CDS |
CGGGATGAAGATGAAGGTGT+CGG | 0.635230 | 1.4:+61932908 | None:intergenic |
TATTCCTGGCTTGAAAAGAG+TGG | 0.635586 | 1.4:+61933387 | None:intergenic |
ATAATTGAAACTCCTTCACT+AGG | 0.640706 | 1.4:-61932763 | MS.gene004828:CDS |
GGACAAAGTTGGGAAGCTGA+AGG | 0.643162 | 1.4:-61932304 | MS.gene004828:CDS |
ATGCATCTGCTCACCAGATG+GGG | 0.645408 | 1.4:-61932375 | MS.gene004828:CDS |
TTGGGCACTTTGTTGCTGAG+TGG | 0.651940 | 1.4:-61934182 | MS.gene004828:CDS |
TGCATGCAGTGTGATGAGAA+TGG | 0.652881 | 1.4:-61933909 | MS.gene004828:intron |
CGATGCTGACCAATTAATAG+CGG | 0.653035 | 1.4:+61933461 | None:intergenic |
TACATGGCTTGTCGATGCTG+TGG | 0.655714 | 1.4:-61933160 | MS.gene004828:CDS |
TCATCAGAGCATCATTACTG+TGG | 0.658251 | 1.4:-61933231 | MS.gene004828:CDS |
CCACTAGAGATCATTAAAGG+TGG | 0.659295 | 1.4:+61932952 | None:intergenic |
GACACAATGTCTGATCTCAA+GGG | 0.662661 | 1.4:-61932859 | MS.gene004828:CDS |
TCAGGACAAAGGCTGTGGAG+AGG | 0.675886 | 1.4:-61932641 | MS.gene004828:CDS |
AATCACTGACAAAGAAGGCG+CGG | 0.689942 | 1.4:-61932338 | MS.gene004828:CDS |
GACACAGTGTGTGAAAGGAT+CGG | 0.690079 | 1.4:-61933351 | MS.gene004828:CDS |
CGGTGTAACCGATACTTGTG+TGG | 0.693449 | 1.4:-61933331 | MS.gene004828:CDS |
AAGGGTAAAAGCTATGAGGG+AGG | 0.696437 | 1.4:-61932841 | MS.gene004828:CDS |
CCTCAAAGTGAAATGTGATG+TGG | 0.700192 | 1.4:-61933703 | MS.gene004828:CDS |
GTAGAAAAGGAAATAAACAA+GGG | 0.702397 | 1.4:-61933191 | MS.gene004828:CDS |
CATCCCGTGCTAATGACGTG+GGG | 0.703774 | 1.4:-61932892 | MS.gene004828:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATAAGGAAAGATTTG+AGG | + | chr1.4:61932196-61932215 | None:intergenic | 20.0% |
!! | ATCACTGATAAGAAAAAATA+AGG | + | chr1.4:61932208-61932227 | None:intergenic | 20.0% |
!! | ATTAATCTAAAAATGTGCAT+AGG | - | chr1.4:61932478-61932497 | MS.gene004828:CDS | 20.0% |
!! | GGATTAAAGAATAAGAATAT+CGG | - | chr1.4:61933832-61933851 | MS.gene004828:CDS | 20.0% |
!! | TATATTGAACATGAATTTGA+AGG | - | chr1.4:61932262-61932281 | MS.gene004828:CDS | 20.0% |
!!! | TTCAATTATAGCTTTTACTT+TGG | + | chr1.4:61933989-61934008 | None:intergenic | 20.0% |
! | AAAGAAATGTTTAGGAGTTA+TGG | - | chr1.4:61933705-61933724 | MS.gene004828:CDS | 25.0% |
! | AATAGACTGAATAGTTATCA+TGG | + | chr1.4:61934535-61934554 | None:intergenic | 25.0% |
! | ATAGACTGAATAGTTATCAT+GGG | + | chr1.4:61934534-61934553 | None:intergenic | 25.0% |
! | ATCAATTTCAAGACCTTTAT+TGG | + | chr1.4:61933020-61933039 | None:intergenic | 25.0% |
! | CAAGTAATATTCAAAAAGAG+AGG | - | chr1.4:61932930-61932949 | MS.gene004828:CDS | 25.0% |
! | GTAGAAAAGGAAATAAACAA+GGG | - | chr1.4:61933572-61933591 | MS.gene004828:CDS | 25.0% |
! | TAAAGAAATGCAAGTCTAAT+AGG | + | chr1.4:61932716-61932735 | None:intergenic | 25.0% |
! | TCATTTCATCACAATTATTC+AGG | - | chr1.4:61934104-61934123 | MS.gene004828:CDS | 25.0% |
! | TGTAGAAAAGGAAATAAACA+AGG | - | chr1.4:61933571-61933590 | MS.gene004828:CDS | 25.0% |
!! | AAAGTACTTGTTCTTGAAAA+GGG | - | chr1.4:61933145-61933164 | MS.gene004828:CDS | 25.0% |
!! | CAAAGCTGAAAAGTTTATTT+TGG | - | chr1.4:61933654-61933673 | MS.gene004828:CDS | 25.0% |
!! | TCTTTTTATTGTGTTTGTGA+TGG | - | chr1.4:61932812-61932831 | MS.gene004828:CDS | 25.0% |
!!! | GTTTATTTTGGAGAATAACA+AGG | - | chr1.4:61933666-61933685 | MS.gene004828:CDS | 25.0% |
AAATGTGATGTGGTAATTGT+CGG | - | chr1.4:61933070-61933089 | MS.gene004828:CDS | 30.0% | |
AATCCACTAGAGATCATTAA+AGG | + | chr1.4:61933817-61933836 | None:intergenic | 30.0% | |
AATGGAATTGAATAAGTTCG+TGG | - | chr1.4:61934311-61934330 | MS.gene004828:intron | 30.0% | |
AGAAGAATACAATAAGGCAA+AGG | + | chr1.4:61932748-61932767 | None:intergenic | 30.0% | |
ATAATTGAAACTCCTTCACT+AGG | - | chr1.4:61934000-61934019 | MS.gene004828:intron | 30.0% | |
ATCACAATTATTCAGGACAA+AGG | - | chr1.4:61934111-61934130 | MS.gene004828:CDS | 30.0% | |
ATGGATACTATCAACAAAGT+TGG | - | chr1.4:61932562-61932581 | MS.gene004828:CDS | 30.0% | |
ATTGAATAAGTTCGTGGAAT+CGG | - | chr1.4:61934317-61934336 | MS.gene004828:intron | 30.0% | |
ATTGTCAACATGATAACCAA+TGG | + | chr1.4:61932900-61932919 | None:intergenic | 30.0% | |
GACTGTTTGAGAAAAGTTTA+TGG | - | chr1.4:61932352-61932371 | MS.gene004828:CDS | 30.0% | |
GAGAAAAGGTTCTTCAAAAA+TGG | - | chr1.4:61932669-61932688 | MS.gene004828:CDS | 30.0% | |
GATAAGTTATTATCGTTGAG+AGG | + | chr1.4:61932425-61932444 | None:intergenic | 30.0% | |
GTGAGAAGAAAGAAATGTTT+AGG | - | chr1.4:61933697-61933716 | MS.gene004828:CDS | 30.0% | |
TCAAGAGAAGAAAAATCTCT+CGG | + | chr1.4:61933184-61933203 | None:intergenic | 30.0% | |
TCATAAAGCTCATTCAAAGA+GGG | + | chr1.4:61933211-61933230 | None:intergenic | 30.0% | |
TGATGAAAATGGACAAAGTT+GGG | - | chr1.4:61934449-61934468 | MS.gene004828:intron | 30.0% | |
TGGATACTATCAACAAAGTT+GGG | - | chr1.4:61932563-61932582 | MS.gene004828:CDS | 30.0% | |
TGTAACTATGGTTGTAGAAA+AGG | - | chr1.4:61933559-61933578 | MS.gene004828:CDS | 30.0% | |
TTATTATCGTTGAGAGGTTA+AGG | + | chr1.4:61932419-61932438 | None:intergenic | 30.0% | |
TTCATAAAGCTCATTCAAAG+AGG | + | chr1.4:61933212-61933231 | None:intergenic | 30.0% | |
TTCTTTGCAAAACAGAGAAA+AGG | - | chr1.4:61932655-61932674 | MS.gene004828:CDS | 30.0% | |
TTGATGAAAATGGACAAAGT+TGG | - | chr1.4:61934448-61934467 | MS.gene004828:intron | 30.0% | |
TTTCAAGAACAAGTACTTTG+AGG | + | chr1.4:61933144-61933163 | None:intergenic | 30.0% | |
! | AGAGATTTTTCTTCTCTTGA+AGG | - | chr1.4:61933184-61933203 | MS.gene004828:CDS | 30.0% |
! | CAAAGTACTTGTTCTTGAAA+AGG | - | chr1.4:61933144-61933163 | MS.gene004828:CDS | 30.0% |
! | TTGAATGAGCTTTATGAACT+AGG | - | chr1.4:61933214-61933233 | MS.gene004828:CDS | 30.0% |
! | TTGTAGTGGAACTAATGAAA+TGG | - | chr1.4:61934293-61934312 | MS.gene004828:intron | 30.0% |
! | TTTGAGAAGTTGTTGATGAA+AGG | + | chr1.4:61932632-61932651 | None:intergenic | 30.0% |
!! | ATTTTGGAGAATAACAAGGA+AGG | - | chr1.4:61933670-61933689 | MS.gene004828:CDS | 30.0% |
!! | CACATTGAAAATTCAAGTTG+AGG | - | chr1.4:61933750-61933769 | MS.gene004828:CDS | 30.0% |
AAAGCAACAATCTCATCATG+TGG | - | chr1.4:61933775-61933794 | MS.gene004828:CDS | 35.0% | |
AACTTATCAGCATGCATGTA+TGG | - | chr1.4:61932437-61932456 | MS.gene004828:CDS | 35.0% | |
ATAGGAATCACTGACAAAGA+AGG | - | chr1.4:61934420-61934439 | MS.gene004828:intron | 35.0% | |
CAAGTTTCTTGATGTGACAT+TGG | + | chr1.4:61934360-61934379 | None:intergenic | 35.0% | |
CAATCTGTTAGCACATAATC+CGG | + | chr1.4:61933337-61933356 | None:intergenic | 35.0% | |
CAATGTCACATCAAGAAACT+TGG | - | chr1.4:61934358-61934377 | MS.gene004828:intron | 35.0% | |
CCTGAGAGAAGAATACAATA+AGG | + | chr1.4:61932754-61932773 | None:intergenic | 35.0% | |
CCTTATTGTATTCTTCTCTC+AGG | - | chr1.4:61932751-61932770 | MS.gene004828:CDS | 35.0% | |
CCTTTATTGGAAAGAGATTG+CGG | + | chr1.4:61933007-61933026 | None:intergenic | 35.0% | |
GGAAAAATAGTTCTTCTTGC+AGG | - | chr1.4:61933259-61933278 | MS.gene004828:CDS | 35.0% | |
GTATCCATAGAATCACTCTA+AGG | + | chr1.4:61932550-61932569 | None:intergenic | 35.0% | |
TACTCCTTAGAGTGATTCTA+TGG | - | chr1.4:61932543-61932562 | MS.gene004828:CDS | 35.0% | |
TACTGTGGTTCTTGTAACTA+TGG | - | chr1.4:61933547-61933566 | MS.gene004828:CDS | 35.0% | |
TGATGCTCTGATGAATTTCT+CGG | + | chr1.4:61933526-61933545 | None:intergenic | 35.0% | |
! | AATAGTGGAAGCTATGAATG+AGG | - | chr1.4:61932967-61932986 | MS.gene004828:CDS | 35.0% |
! | AATGAGCTTTATGAACTAGG+AGG | - | chr1.4:61933217-61933236 | MS.gene004828:CDS | 35.0% |
! | ACATGATGAGATTGTTGCTT+TGG | + | chr1.4:61933776-61933795 | None:intergenic | 35.0% |
! | AGTTTGTTTCCAACTGCAAT+AGG | - | chr1.4:61934501-61934520 | MS.gene004828:intron | 35.0% |
! | ATTTTCTACCGTGATTCCTT+GGG | - | chr1.4:61934032-61934051 | MS.gene004828:CDS | 35.0% |
! | CAAGTTCGTTACAACCTTTT+CGG | + | chr1.4:61933483-61933502 | None:intergenic | 35.0% |
! | CTAAGGAGTATAACTACTTC+TGG | + | chr1.4:61932533-61932552 | None:intergenic | 35.0% |
!! | TCTTTCTTTGAAGTCGAATC+CGG | + | chr1.4:61934061-61934080 | None:intergenic | 35.0% |
AAAAAGAGAGGCCTCTTGAA+AGG | - | chr1.4:61932942-61932961 | MS.gene004828:CDS | 40.0% | |
AAAAGAGAGGCCTCTTGAAA+GGG | - | chr1.4:61932943-61932962 | MS.gene004828:CDS | 40.0% | |
AGAATGGTGAAAACCAAGCA+TGG | - | chr1.4:61932870-61932889 | MS.gene004828:CDS | 40.0% | |
ATCGACAAGCCATGTAACAT+CGG | + | chr1.4:61933599-61933618 | None:intergenic | 40.0% | |
ATTATTCAGGACAAAGGCTG+TGG | - | chr1.4:61934117-61934136 | MS.gene004828:CDS | 40.0% | |
CAGAATCAAGTTCTCCGAAA+AGG | - | chr1.4:61933466-61933485 | MS.gene004828:CDS | 40.0% | |
CCACATCACATTTCACTTTG+AGG | + | chr1.4:61933063-61933082 | None:intergenic | 40.0% | |
CCACCTTTAATGATCTCTAG+TGG | - | chr1.4:61933811-61933830 | MS.gene004828:CDS | 40.0% | |
CCACTAGAGATCATTAAAGG+TGG | + | chr1.4:61933814-61933833 | None:intergenic | 40.0% | |
CCAGGAATATCTTTCTGCTA+TGG | - | chr1.4:61933390-61933409 | MS.gene004828:CDS | 40.0% | |
CCATAGCAGAAAGATATTCC+TGG | + | chr1.4:61933393-61933412 | None:intergenic | 40.0% | |
CCGCAATCTCTTTCCAATAA+AGG | - | chr1.4:61933004-61933023 | MS.gene004828:CDS | 40.0% | |
CCTCAAAGTGAAATGTGATG+TGG | - | chr1.4:61933060-61933079 | MS.gene004828:CDS | 40.0% | |
CGAAAAGGTTGTAACGAACT+TGG | - | chr1.4:61933481-61933500 | MS.gene004828:CDS | 40.0% | |
CGATGCTGACCAATTAATAG+CGG | + | chr1.4:61933305-61933324 | None:intergenic | 40.0% | |
CGGATTATGTGCTAACAGAT+TGG | - | chr1.4:61933335-61933354 | MS.gene004828:CDS | 40.0% | |
CTCAAGGGTAAAAGCTATGA+GGG | - | chr1.4:61933919-61933938 | MS.gene004828:intron | 40.0% | |
CTCTCTGTCTGACTAAGAAA+TGG | - | chr1.4:61932606-61932625 | MS.gene004828:CDS | 40.0% | |
GAATGGTGAAAACCAAGCAT+GGG | - | chr1.4:61932871-61932890 | MS.gene004828:CDS | 40.0% | |
GACAAAGAGAACATGAAGCA+TGG | - | chr1.4:61934189-61934208 | MS.gene004828:CDS | 40.0% | |
GACACAATGTCTGATCTCAA+GGG | - | chr1.4:61933904-61933923 | MS.gene004828:intron | 40.0% | |
GGACAGAGAATTGTTTGTAG+TGG | - | chr1.4:61934279-61934298 | MS.gene004828:intron | 40.0% | |
GGATTGATACCTATTGCAGT+TGG | + | chr1.4:61934513-61934532 | None:intergenic | 40.0% | |
TCCTTCAACCACACAAGTAT+CGG | + | chr1.4:61933443-61933462 | None:intergenic | 40.0% | |
TCTCAAGGGTAAAAGCTATG+AGG | - | chr1.4:61933918-61933937 | MS.gene004828:intron | 40.0% | |
TCTTATCAGTGATGAGTTGC+AGG | - | chr1.4:61932215-61932234 | MS.gene004828:CDS | 40.0% | |
TTGAGATCAGACATTGTGTC+CGG | + | chr1.4:61933904-61933923 | None:intergenic | 40.0% | |
! | AGGAGGAACTTTTGCAACAT+CGG | - | chr1.4:61933234-61933253 | MS.gene004828:CDS | 40.0% |
! | CATTTTCTACCGTGATTCCT+TGG | - | chr1.4:61934031-61934050 | MS.gene004828:CDS | 40.0% |
! | TATTCCTGGCTTGAAAAGAG+TGG | + | chr1.4:61933379-61933398 | None:intergenic | 40.0% |
! | TCATCAGAGCATCATTACTG+TGG | - | chr1.4:61933532-61933551 | MS.gene004828:CDS | 40.0% |
!! | CCAAGAGAATTGCACTGATT+CGG | - | chr1.4:61934568-61934587 | MS.gene004828:CDS | 40.0% |
!! | GTCAGCATCGATTAAAACAC+CGG | - | chr1.4:61933315-61933334 | MS.gene004828:CDS | 40.0% |
AAAGAGAGGCCTCTTGAAAG+GGG | - | chr1.4:61932944-61932963 | MS.gene004828:CDS | 45.0% | |
AACAAGGGACCGATGTTACA+TGG | - | chr1.4:61933587-61933606 | MS.gene004828:CDS | 45.0% | |
AAGGGTAAAAGCTATGAGGG+AGG | - | chr1.4:61933922-61933941 | MS.gene004828:intron | 45.0% | |
AATCACTGACAAAGAAGGCG+CGG | - | chr1.4:61934425-61934444 | MS.gene004828:intron | 45.0% | |
ACCGATACTTGTGTGGTTGA+AGG | - | chr1.4:61933439-61933458 | MS.gene004828:CDS | 45.0% | |
AGAGATCATTAAAGGTGGCG+TGG | + | chr1.4:61933809-61933828 | None:intergenic | 45.0% | |
ATCACGGTAGAAAATGCTCC+TGG | + | chr1.4:61934027-61934046 | None:intergenic | 45.0% | |
CCGAATCAGTGCAATTCTCT+TGG | + | chr1.4:61934571-61934590 | None:intergenic | 45.0% | |
CTATGGACACAGTGTGTGAA+AGG | - | chr1.4:61933407-61933426 | MS.gene004828:CDS | 45.0% | |
CTGAGGATACTAATAGCAGC+TGG | - | chr1.4:61934225-61934244 | MS.gene004828:CDS | 45.0% | |
CTTCTTGCAGGTTCAACAGT+TGG | - | chr1.4:61933271-61933290 | MS.gene004828:CDS | 45.0% | |
GACACAGTGTGTGAAAGGAT+CGG | - | chr1.4:61933412-61933431 | MS.gene004828:CDS | 45.0% | |
GATACTAATAGCAGCTGGAG+CGG | - | chr1.4:61934230-61934249 | MS.gene004828:CDS | 45.0% | |
GGACACAATGTCTGATCTCA+AGG | - | chr1.4:61933903-61933922 | MS.gene004828:CDS | 45.0% | |
GTAGGTACTCACAGAAGTGA+TGG | - | chr1.4:61934258-61934277 | MS.gene004828:CDS | 45.0% | |
GTGGTGGTTCCGCTATTAAT+TGG | - | chr1.4:61933293-61933312 | MS.gene004828:CDS | 45.0% | |
TATGCATCTGCTCACCAGAT+GGG | - | chr1.4:61934387-61934406 | MS.gene004828:intron | 45.0% | |
TCCACTATTCCCCTTTCAAG+AGG | + | chr1.4:61932956-61932975 | None:intergenic | 45.0% | |
TGCATGCAGTGTGATGAGAA+TGG | - | chr1.4:61932854-61932873 | MS.gene004828:CDS | 45.0% | |
TTAGCACGGGATGAAGATGA+AGG | + | chr1.4:61933864-61933883 | None:intergenic | 45.0% | |
! | AATGACGTGGGGACATTTTC+CGG | - | chr1.4:61933882-61933901 | MS.gene004828:CDS | 45.0% |
! | GGAACTTTTGCAACATCGGA+TGG | - | chr1.4:61933238-61933257 | MS.gene004828:CDS | 45.0% |
!! | GATGTGGTAATTGTCGGTTC+CGG | - | chr1.4:61933076-61933095 | MS.gene004828:CDS | 45.0% |
!! | TCTACCACTCTTTTCAAGCC+AGG | - | chr1.4:61933372-61933391 | MS.gene004828:CDS | 45.0% |
AACCAAGCATGGGAAGCCAT+TGG | - | chr1.4:61932881-61932900 | MS.gene004828:CDS | 50.0% | |
AACCAATGGCTTCCCATGCT+TGG | + | chr1.4:61932886-61932905 | None:intergenic | 50.0% | |
AAGTCGAATCCGGATTCCCA+AGG | + | chr1.4:61934051-61934070 | None:intergenic | 50.0% | |
AATGCTCCTGGTCCTAGTGA+AGG | + | chr1.4:61934015-61934034 | None:intergenic | 50.0% | |
ACCGTGATTCCTTGGGAATC+CGG | - | chr1.4:61934039-61934058 | MS.gene004828:CDS | 50.0% | |
ATGCATCTGCTCACCAGATG+GGG | - | chr1.4:61934388-61934407 | MS.gene004828:intron | 50.0% | |
ATGTCCCCACGTCATTAGCA+CGG | + | chr1.4:61933878-61933897 | None:intergenic | 50.0% | |
CAGATGGGGAGTTGTAGGAT+AGG | - | chr1.4:61934402-61934421 | MS.gene004828:intron | 50.0% | |
CGGTGTAACCGATACTTGTG+TGG | - | chr1.4:61933432-61933451 | MS.gene004828:CDS | 50.0% | |
CTATCCTACAACTCCCCATC+TGG | + | chr1.4:61934404-61934423 | None:intergenic | 50.0% | |
CTTGCAGGTTCAACAGTTGG+TGG | - | chr1.4:61933274-61933293 | MS.gene004828:CDS | 50.0% | |
CTTGTCGATGCTGTGGAACA+CGG | - | chr1.4:61933610-61933629 | MS.gene004828:CDS | 50.0% | |
GAAACTCCTTCACTAGGACC+AGG | - | chr1.4:61934006-61934025 | MS.gene004828:intron | 50.0% | |
GCCTCTTGAAAGGGGAATAG+TGG | - | chr1.4:61932952-61932971 | MS.gene004828:CDS | 50.0% | |
GCTGCTGTTCTTGCAAGTTC+AGG | - | chr1.4:61933118-61933137 | MS.gene004828:CDS | 50.0% | |
GGACAAAGTTGGGAAGCTGA+AGG | - | chr1.4:61934459-61934478 | MS.gene004828:intron | 50.0% | |
GTATGCATCTGCTCACCAGA+TGG | - | chr1.4:61934386-61934405 | MS.gene004828:intron | 50.0% | |
TCATCCCGTGCTAATGACGT+GGG | - | chr1.4:61933870-61933889 | MS.gene004828:CDS | 50.0% | |
TCCGGATTCCCAAGGAATCA+CGG | + | chr1.4:61934043-61934062 | None:intergenic | 50.0% | |
TTCATCCCGTGCTAATGACG+TGG | - | chr1.4:61933869-61933888 | MS.gene004828:CDS | 50.0% | |
TTGGGCACTTTGTTGCTGAG+TGG | - | chr1.4:61932581-61932600 | MS.gene004828:CDS | 50.0% | |
! | ACATGAAGCATGGACTGCAG+CGG | - | chr1.4:61934199-61934218 | MS.gene004828:CDS | 50.0% |
! | CGGGATGAAGATGAAGGTGT+CGG | + | chr1.4:61933858-61933877 | None:intergenic | 50.0% |
! | TACATGGCTTGTCGATGCTG+TGG | - | chr1.4:61933603-61933622 | MS.gene004828:CDS | 50.0% |
!! | GAAGGCGCGGTTGATGAAAA+TGG | - | chr1.4:61934438-61934457 | MS.gene004828:intron | 50.0% |
!! | GTAATTGTCGGTTCCGGTTG+CGG | - | chr1.4:61933082-61933101 | MS.gene004828:CDS | 50.0% |
AATAGCAGCTGGAGCGGTTG+AGG | - | chr1.4:61934236-61934255 | MS.gene004828:CDS | 55.0% | |
CATCCCGTGCTAATGACGTG+GGG | - | chr1.4:61933871-61933890 | MS.gene004828:CDS | 55.0% | |
CTCACCAGATGGGGAGTTGT+AGG | - | chr1.4:61934397-61934416 | MS.gene004828:intron | 55.0% | |
TCAGGACAAAGGCTGTGGAG+AGG | - | chr1.4:61934122-61934141 | MS.gene004828:CDS | 55.0% | |
TGTCCCCACGTCATTAGCAC+GGG | + | chr1.4:61933877-61933896 | None:intergenic | 55.0% | |
TGTGGAGAGGTGAAGAGCGA+GGG | - | chr1.4:61934135-61934154 | MS.gene004828:CDS | 55.0% | |
! | CATGAAGCATGGACTGCAGC+GGG | - | chr1.4:61934200-61934219 | MS.gene004828:CDS | 55.0% |
!! | GAATCGGTTTGCGCAGCAGA+AGG | - | chr1.4:61934333-61934352 | MS.gene004828:intron | 55.0% |
!! | GCAGGTTCAACAGTTGGTGG+TGG | - | chr1.4:61933277-61933296 | MS.gene004828:CDS | 55.0% |
CTGTGGAGAGGTGAAGAGCG+AGG | - | chr1.4:61934134-61934153 | MS.gene004828:CDS | 60.0% | |
GAGAGGTGAAGAGCGAGGGT+AGG | - | chr1.4:61934139-61934158 | MS.gene004828:CDS | 60.0% | |
TGCAACTCCTCCACCGCAAC+CGG | + | chr1.4:61933098-61933117 | None:intergenic | 60.0% | |
!! | ATTGTCGGTTCCGGTTGCGG+TGG | - | chr1.4:61933085-61933104 | MS.gene004828:CDS | 60.0% |
GCAGCTGGAGCGGTTGAGGT+AGG | - | chr1.4:61934240-61934259 | MS.gene004828:CDS | 65.0% | |
! | ATGGACTGCAGCGGGCGCTG+AGG | - | chr1.4:61934208-61934227 | MS.gene004828:CDS | 70.0% |
! | GTCGGTTCCGGTTGCGGTGG+AGG | - | chr1.4:61933088-61933107 | MS.gene004828:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 61932186 | 61934599 | 61932186 | ID=MS.gene004828 |
chr1.4 | mRNA | 61932186 | 61934599 | 61932186 | ID=MS.gene004828.t1;Parent=MS.gene004828 |
chr1.4 | exon | 61934549 | 61934599 | 61934549 | ID=MS.gene004828.t1.exon1;Parent=MS.gene004828.t1 |
chr1.4 | CDS | 61934549 | 61934599 | 61934549 | ID=cds.MS.gene004828.t1;Parent=MS.gene004828.t1 |
chr1.4 | exon | 61934013 | 61934285 | 61934013 | ID=MS.gene004828.t1.exon2;Parent=MS.gene004828.t1 |
chr1.4 | CDS | 61934013 | 61934285 | 61934013 | ID=cds.MS.gene004828.t1;Parent=MS.gene004828.t1 |
chr1.4 | exon | 61932186 | 61933922 | 61932186 | ID=MS.gene004828.t1.exon3;Parent=MS.gene004828.t1 |
chr1.4 | CDS | 61932186 | 61933922 | 61932186 | ID=cds.MS.gene004828.t1;Parent=MS.gene004828.t1 |
Gene Sequence |
Protein sequence |