Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82452.t1 | XP_003612495.2 | 96.6 | 815 | 28 | 0 | 11 | 825 | 17 | 831 | 0.00E+00 | 1567 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82452.t1 | O65709 | 59.0 | 751 | 282 | 7 | 74 | 823 | 1 | 726 | 1.2e-248 | 860.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82452.t1 | G7K421 | 96.6 | 815 | 28 | 0 | 11 | 825 | 17 | 831 | 0.0e+00 | 1567.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059420 | MS.gene82452 | 0.81496 | 1.18E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene71426 | MS.gene82452 | PPI |
| MS.gene82452 | MS.gene045422 | PPI |
| MS.gene82452 | MS.gene006744 | PPI |
| MS.gene045420 | MS.gene82452 | PPI |
| MS.gene82452 | MS.gene031565 | PPI |
| MS.gene004828 | MS.gene82452 | PPI |
| MS.gene96835 | MS.gene82452 | PPI |
| MS.gene82452 | MS.gene031564 | PPI |
| MS.gene82452 | MS.gene006743 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82452.t1 | MTR_5g025650 | 97.091 | 825 | 24 | 0 | 1 | 825 | 7 | 831 | 0.0 | 1676 |
| MS.gene82452.t1 | MTR_8g072210 | 73.049 | 820 | 210 | 4 | 5 | 823 | 1 | 810 | 0.0 | 1190 |
| MS.gene82452.t1 | MTR_4g080823 | 42.347 | 784 | 387 | 15 | 58 | 821 | 21 | 759 | 0.0 | 576 |
| MS.gene82452.t1 | MTR_4g080890 | 42.621 | 786 | 386 | 15 | 58 | 823 | 12 | 752 | 0.0 | 575 |
| MS.gene82452.t1 | MTR_7g097210 | 42.474 | 784 | 387 | 15 | 50 | 822 | 7 | 737 | 0.0 | 557 |
| MS.gene82452.t1 | MTR_0651s0010 | 42.268 | 679 | 336 | 12 | 58 | 723 | 12 | 647 | 3.75e-164 | 491 |
| MS.gene82452.t1 | MTR_7g097210 | 45.440 | 614 | 279 | 11 | 217 | 822 | 2 | 567 | 7.85e-161 | 480 |
| MS.gene82452.t1 | MTR_1g075650 | 41.063 | 621 | 274 | 13 | 209 | 822 | 3 | 538 | 6.59e-150 | 451 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82452.t1 | AT4G19380 | 57.197 | 792 | 312 | 8 | 34 | 823 | 2 | 768 | 0.0 | 861 |
| MS.gene82452.t1 | AT4G19380 | 58.988 | 751 | 282 | 7 | 74 | 823 | 1 | 726 | 0.0 | 846 |
| MS.gene82452.t1 | AT3G23410 | 39.948 | 771 | 398 | 15 | 69 | 819 | 15 | 740 | 1.70e-175 | 524 |
| MS.gene82452.t1 | AT1G03990 | 38.363 | 782 | 418 | 13 | 61 | 823 | 20 | 756 | 6.00e-175 | 523 |
| MS.gene82452.t1 | AT3G23410 | 41.713 | 712 | 357 | 13 | 121 | 819 | 6 | 672 | 7.33e-173 | 515 |
| MS.gene82452.t1 | AT4G28570 | 39.450 | 763 | 409 | 11 | 69 | 822 | 27 | 745 | 4.76e-172 | 515 |
| MS.gene82452.t1 | AT4G28570 | 39.450 | 763 | 409 | 11 | 69 | 822 | 27 | 745 | 4.76e-172 | 515 |
Find 206 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTCATGCCGTGGGTTTC+TGG | 0.086839 | 5.2:-16266176 | MS.gene82452:CDS |
| ACTCGCGTTCTTTACATTTA+AGG | 0.132660 | 5.2:+16265932 | None:intergenic |
| TTTAACTGAGCTTTGAATTC+TGG | 0.175339 | 5.2:+16267418 | None:intergenic |
| TCAGGGAAAGTGTGTATAAA+AGG | 0.217807 | 5.2:+16276066 | None:intergenic |
| GGAAGCTGTTTGCGAGAAAA+TGG | 0.231686 | 5.2:-16266834 | MS.gene82452:CDS |
| TGGTTTCTGTCTACATGGTT+AGG | 0.272649 | 5.2:-16276132 | MS.gene82452:CDS |
| TACTGTGGATGGTGCTGTTT+GGG | 0.273785 | 5.2:-16266698 | MS.gene82452:CDS |
| TAACAAATTGCTCAAATTCA+TGG | 0.278370 | 5.2:+16265907 | None:intergenic |
| TTGTTCTGAACAACATTCTA+AGG | 0.279704 | 5.2:+16275983 | None:intergenic |
| AACTTTCATCGCTGTACAAC+CGG | 0.293717 | 5.2:+16266595 | None:intergenic |
| GGCAATGGGGCGATTCTTCC+CGG | 0.304802 | 5.2:-16266614 | MS.gene82452:CDS |
| ATGAATATCTTCATATTATC+AGG | 0.322533 | 5.2:-16266986 | MS.gene82452:CDS |
| GTAGGTTCTGCAGGTGCATC+AGG | 0.324555 | 5.2:+16266347 | None:intergenic |
| TGGAGTTGTAGCCGGAATTC+TGG | 0.330538 | 5.2:-16267137 | MS.gene82452:CDS |
| AACTTTAGTACCATTGTCAT+TGG | 0.342432 | 5.2:+16276162 | None:intergenic |
| ACCGGCATTTGCCAGAATTC+CGG | 0.343046 | 5.2:+16267126 | None:intergenic |
| GCGAAAAGGGTGTCAAGAAA+TGG | 0.352000 | 5.2:-16266765 | MS.gene82452:CDS |
| GTTGCAGAGTTTGAGAAATC+AGG | 0.360781 | 5.2:-16266248 | MS.gene82452:CDS |
| GTCGACACTCTAAGACGATT+TGG | 0.360914 | 5.2:-16267268 | MS.gene82452:CDS |
| ATTGATTGAACAGTGATCAT+TGG | 0.361825 | 5.2:+16265699 | None:intergenic |
| TTCATCCAGTGGTAATGGCC+TGG | 0.367497 | 5.2:-16266379 | MS.gene82452:CDS |
| CTACTGTGGATGGTGCTGTT+TGG | 0.368930 | 5.2:-16266699 | MS.gene82452:CDS |
| TCATCCAGTGGTAATGGCCT+GGG | 0.372030 | 5.2:-16266378 | MS.gene82452:CDS |
| TGGTACTAAAGTTGGTGTTA+TGG | 0.374436 | 5.2:-16276152 | MS.gene82452:CDS |
| TTTCGACGGGTAACCGAGAC+AGG | 0.374753 | 5.2:+16267241 | None:intergenic |
| GAATCGGTGGTGAAGGAGAC+AGG | 0.376187 | 5.2:-16265792 | MS.gene82452:CDS |
| CGTTTGTGTAGAGGTAAATC+AGG | 0.376447 | 5.2:+16276048 | None:intergenic |
| CACTGCACAATCAGTTCTTC+AGG | 0.380888 | 5.2:-16265667 | MS.gene82452:CDS |
| ATGGGAAAATATACACGTTC+AGG | 0.388465 | 5.2:+16277095 | None:intergenic |
| TGATAAGGTACTGAGAATTC+TGG | 0.393118 | 5.2:-16266003 | MS.gene82452:CDS |
| AATCAGAAGACAATTGTTCA+TGG | 0.394390 | 5.2:-16267468 | MS.gene82452:CDS |
| TTTGTGCTCGGCACATCAGA+TGG | 0.395922 | 5.2:-16265844 | MS.gene82452:CDS |
| TCCTTCACCACCGATTCCTT+CGG | 0.397068 | 5.2:+16265798 | None:intergenic |
| AACAATCTTTCTCTTCTTGA+AGG | 0.398166 | 5.2:-16267061 | MS.gene82452:CDS |
| AATTGTTCATGGAAAGCAAT+TGG | 0.401562 | 5.2:-16267457 | MS.gene82452:CDS |
| ATTTGAGCAATTTGTTAAAG+AGG | 0.404396 | 5.2:-16265901 | MS.gene82452:CDS |
| CGTATTTCAGCTTCCATGGC+TGG | 0.407420 | 5.2:-16277122 | MS.gene82452:CDS |
| TCACAAACACTCTTTCTCTT+AGG | 0.413754 | 5.2:-16277244 | MS.gene82452:CDS |
| TTCTCAAACTCTGCAACAAC+AGG | 0.414686 | 5.2:+16266254 | None:intergenic |
| GCAGCCGGCGCTGAAGAGAT+TGG | 0.415903 | 5.2:-16265978 | MS.gene82452:CDS |
| GTGGTAGTTGGTTCCGGCTC+AGG | 0.417463 | 5.2:-16267163 | MS.gene82452:CDS |
| TAGAAAGGATAGTTTCAGAT+TGG | 0.419331 | 5.2:-16277366 | MS.gene82452:CDS |
| CAAAACCAACACTTTGTAAC+CGG | 0.424473 | 5.2:+16267108 | None:intergenic |
| CGGTTACAAAGTGTTGGTTT+TGG | 0.424634 | 5.2:-16267107 | MS.gene82452:CDS |
| CGGGATGCAATGCAGGTGTT+TGG | 0.425205 | 5.2:+16266210 | None:intergenic |
| GACGCTGTGGTAGTTGGTTC+CGG | 0.429362 | 5.2:-16267169 | MS.gene82452:CDS |
| GGTTTCTGTCTACATGGTTA+GGG | 0.431876 | 5.2:-16276131 | MS.gene82452:CDS |
| GGAAGCTGAAATACGGTAGA+AGG | 0.433466 | 5.2:+16277130 | None:intergenic |
| AAGTCGTATAAGTTATGAAA+TGG | 0.433596 | 5.2:-16266060 | MS.gene82452:CDS |
| GCCAACAGATTATGCAATCT+TGG | 0.434426 | 5.2:-16276026 | MS.gene82452:CDS |
| CACATCAGATGGGGTCTTGT+CGG | 0.437145 | 5.2:-16265833 | MS.gene82452:CDS |
| ATGGTGCTGTTTGGGATGTA+AGG | 0.442606 | 5.2:-16266690 | MS.gene82452:CDS |
| AATGTACCAATCTGGCGGTT+TGG | 0.443491 | 5.2:-16267023 | MS.gene82452:CDS |
| GGAAACATGGTTGGTGGACT+TGG | 0.443920 | 5.2:-16266645 | MS.gene82452:CDS |
| AGAAAGGATAGTTTCAGATT+GGG | 0.448247 | 5.2:-16277365 | MS.gene82452:CDS |
| GTGGAGGGTCTGCAATCAAT+TGG | 0.448779 | 5.2:-16266952 | MS.gene82452:CDS |
| TTTACAGAAGGGAATTGATA+AGG | 0.449122 | 5.2:-16266018 | MS.gene82452:CDS |
| CTACCGTATTTCAGCTTCCA+TGG | 0.449137 | 5.2:-16277126 | MS.gene82452:CDS |
| TTACCTGAGTGAAGAAGATT+AGG | 0.450249 | 5.2:+16275944 | None:intergenic |
| AGTGTCTTTCCTACAGCGTT+GGG | 0.451621 | 5.2:-16265729 | MS.gene82452:CDS |
| CGAAAAGGGTGTCAAGAAAT+GGG | 0.454222 | 5.2:-16266764 | MS.gene82452:CDS |
| GACAGGGGAGACATGGGAAG+TGG | 0.458715 | 5.2:-16265775 | MS.gene82452:CDS |
| GATGCACCTGTAGGTTCTGC+AGG | 0.459293 | 5.2:+16266338 | None:intergenic |
| GAGATGGAGAATAGTAATAG+AGG | 0.459800 | 5.2:-16277428 | MS.gene82452:CDS |
| TAGCCCCAGGCCATTACCAC+TGG | 0.460579 | 5.2:+16266374 | None:intergenic |
| CCCTTTGTAAAGAGGTCCTA+TGG | 0.460808 | 5.2:+16267324 | None:intergenic |
| GTTGGTTCCGGCTCAGGAGG+TGG | 0.462813 | 5.2:-16267157 | MS.gene82452:CDS |
| GGAACAAAGTCATTGATAGA+AGG | 0.463513 | 5.2:+16277182 | None:intergenic |
| ACAAGCTACAATTGTGACCT+TGG | 0.466676 | 5.2:+16266475 | None:intergenic |
| TTGGTGGACTTGGTGAAATC+TGG | 0.468212 | 5.2:-16266635 | MS.gene82452:CDS |
| TGAAGGAGACAGGGGAGACA+TGG | 0.471232 | 5.2:-16265782 | MS.gene82452:CDS |
| AATGACAATGGTACTAAAGT+TGG | 0.471554 | 5.2:-16276160 | MS.gene82452:CDS |
| ACTTGGTGAAATCTGGCAAT+GGG | 0.471710 | 5.2:-16266628 | MS.gene82452:CDS |
| GATTCGTCGTCGTCGGAGAC+AGG | 0.475074 | 5.2:+16277161 | None:intergenic |
| GCATCTTCATCCAGTGGTAA+TGG | 0.475705 | 5.2:-16266384 | MS.gene82452:CDS |
| CAGTTCTTCAGGTTCTGAAA+AGG | 0.477971 | 5.2:-16265656 | MS.gene82452:CDS |
| TGTTATGGTTTCTGTCTACA+TGG | 0.479156 | 5.2:-16276137 | MS.gene82452:CDS |
| GAAACCTTCCTCTTCTATCT+CGG | 0.481514 | 5.2:+16266802 | None:intergenic |
| TGCATCAGGGAAGTAGCCCC+AGG | 0.482828 | 5.2:+16266361 | None:intergenic |
| TGAGCTTTGAATTCTGGATC+AGG | 0.482943 | 5.2:+16267424 | None:intergenic |
| ATGGATCAAATGTACCAATC+TGG | 0.485800 | 5.2:-16267031 | MS.gene82452:CDS |
| TAGGAAGGGTAGCGTTAGAA+AGG | 0.486877 | 5.2:-16277381 | MS.gene82452:CDS |
| CTCATATATTTGCACTAGCA+AGG | 0.487990 | 5.2:-16266112 | MS.gene82452:CDS |
| TTGTGCTCGGCACATCAGAT+GGG | 0.494296 | 5.2:-16265843 | MS.gene82452:CDS |
| CAGGGAAAGTGTGTATAAAA+GGG | 0.494879 | 5.2:+16276067 | None:intergenic |
| CCATAGGACCTCTTTACAAA+GGG | 0.499145 | 5.2:-16267324 | MS.gene82452:CDS |
| CATTCTCGATTGTCATGCCG+TGG | 0.499519 | 5.2:-16266184 | MS.gene82452:CDS |
| GGGATCTAATCCGAAGGAAT+CGG | 0.502365 | 5.2:-16265808 | MS.gene82452:CDS |
| GACTTGGTGAAATCTGGCAA+TGG | 0.502806 | 5.2:-16266629 | MS.gene82452:CDS |
| CTGAGGTGTGGCCCGAGACA+TGG | 0.502920 | 5.2:-16266316 | MS.gene82452:CDS |
| AATGTACCGGGATGCAATGC+AGG | 0.504077 | 5.2:+16266203 | None:intergenic |
| CGAATTGTATCAAGAAGCTA+TGG | 0.505419 | 5.2:-16266855 | MS.gene82452:CDS |
| ATATTATCAGGATCAACTGT+TGG | 0.505490 | 5.2:-16266974 | MS.gene82452:CDS |
| TCACATTGTATAACTAAAGA+AGG | 0.507906 | 5.2:+16267190 | None:intergenic |
| TCAGATGGGGTCTTGTCGGA+TGG | 0.510460 | 5.2:-16265829 | MS.gene82452:CDS |
| TGGTACATTTGATCCATTGT+TGG | 0.511444 | 5.2:+16267037 | None:intergenic |
| AAGTGTCTTTCCTACAGCGT+TGG | 0.513668 | 5.2:-16265730 | MS.gene82452:CDS |
| AAAGAAGGAGATGATAAGCT+TGG | 0.514270 | 5.2:+16267205 | None:intergenic |
| GTGTATAAAAGGGAACTTTG+TGG | 0.515128 | 5.2:+16276077 | None:intergenic |
| TCTTCTTGAAGGACCAACAA+TGG | 0.515800 | 5.2:-16267050 | MS.gene82452:CDS |
| TCCGAAGGAATCGGTGGTGA+AGG | 0.516816 | 5.2:-16265799 | MS.gene82452:CDS |
| TACAACTCCACCTCCTGAGC+CGG | 0.517239 | 5.2:+16267150 | None:intergenic |
| CCTTTCGACGCCTTTGTGCT+CGG | 0.518797 | 5.2:-16265856 | MS.gene82452:CDS |
| TTGCAACCAAACCGCCAGAT+TGG | 0.521706 | 5.2:+16267017 | None:intergenic |
| ATGTAAGGATGGAAAGAAGA+AGG | 0.521921 | 5.2:-16266675 | MS.gene82452:CDS |
| TTGTTAAAGAGGAAAGTTCA+AGG | 0.527664 | 5.2:-16265890 | MS.gene82452:CDS |
| CTTCTCTTAGAAGGTGGTGG+TGG | 0.528374 | 5.2:-16277293 | MS.gene82452:CDS |
| TTCCTCGGAATGTTATTCAC+AGG | 0.528834 | 5.2:+16266737 | None:intergenic |
| CCATCATTGCTTAAAAGAAG+CGG | 0.529615 | 5.2:-16266437 | MS.gene82452:CDS |
| GAAGCTGTTTGCGAGAAAAT+GGG | 0.530053 | 5.2:-16266833 | MS.gene82452:CDS |
| CAGCCATGGAAGCTGAAATA+CGG | 0.530516 | 5.2:+16277123 | None:intergenic |
| ATCTGTTGGCGTTTGTGTAG+AGG | 0.531304 | 5.2:+16276039 | None:intergenic |
| TTTGCACTAGCAAGGGATCA+AGG | 0.531399 | 5.2:-16266104 | MS.gene82452:CDS |
| ATTTCATAACTTATACGACT+TGG | 0.533418 | 5.2:+16266062 | None:intergenic |
| CTGAGAATTCTGGCTGCAGC+CGG | 0.533445 | 5.2:-16265993 | MS.gene82452:CDS |
| TGCTGTTTGGGATGTAAGGA+TGG | 0.534914 | 5.2:-16266686 | MS.gene82452:CDS |
| CTAGCAAGGGATCAAGGATC+GGG | 0.535447 | 5.2:-16266098 | MS.gene82452:CDS |
| GCCGGAATTCTGGCAAATGC+CGG | 0.537102 | 5.2:-16267127 | MS.gene82452:CDS |
| ATGACAATCGAGAATGTACC+GGG | 0.538959 | 5.2:+16266191 | None:intergenic |
| AGCAAACATGGACATGGAGA+TGG | 0.539353 | 5.2:-16277444 | None:intergenic |
| AAATGCCGGTTACAAAGTGT+TGG | 0.540631 | 5.2:-16267113 | MS.gene82452:CDS |
| TCAGGAGGTGGAGTTGTAGC+CGG | 0.545470 | 5.2:-16267145 | MS.gene82452:CDS |
| AAGGATAGTTTCAGATTGGG+AGG | 0.546950 | 5.2:-16277362 | MS.gene82452:CDS |
| GAAGGAGACAGGGGAGACAT+GGG | 0.547527 | 5.2:-16265781 | MS.gene82452:CDS |
| TCAGGATCAACTGTTGGTGG+AGG | 0.550654 | 5.2:-16266968 | MS.gene82452:CDS |
| ACGTTCAGGTGTTCCAGCCA+TGG | 0.550679 | 5.2:+16277109 | None:intergenic |
| CAATGTGACGCTGTGGTAGT+TGG | 0.551132 | 5.2:-16267175 | MS.gene82452:CDS |
| TGGACAAGCCCTTTGTAAAG+AGG | 0.551242 | 5.2:+16267316 | None:intergenic |
| ACCAAGATTGCATAATCTGT+TGG | 0.551313 | 5.2:+16276025 | None:intergenic |
| CAGATGGGGTCTTGTCGGAT+GGG | 0.552514 | 5.2:-16265828 | MS.gene82452:CDS |
| GATCACACAGTGGTTGAGCT+AGG | 0.554204 | 5.2:-16277335 | MS.gene82452:CDS |
| ACGATTTGGATTCCCTGTCT+CGG | 0.555886 | 5.2:-16267254 | MS.gene82452:CDS |
| CACTCTTTGCACACATGCTG+AGG | 0.558971 | 5.2:+16266911 | None:intergenic |
| CATTTGCGTGGTCGAATCCA+AGG | 0.560871 | 5.2:-16266492 | MS.gene82452:CDS |
| GATGCACCTGCAGAACCTAC+AGG | 0.561208 | 5.2:-16266344 | MS.gene82452:CDS |
| GATGAAGAGAATTTACAGAA+GGG | 0.562115 | 5.2:-16266029 | MS.gene82452:CDS |
| TGATGAAGAGAATTTACAGA+AGG | 0.564493 | 5.2:-16266030 | MS.gene82452:CDS |
| AGGGGAGACATGGGAAGTGG+AGG | 0.564528 | 5.2:-16265772 | MS.gene82452:CDS |
| CATCCAGTGGTAATGGCCTG+GGG | 0.571311 | 5.2:-16266377 | MS.gene82452:CDS |
| CGTCTGATCACTACTGTGGA+TGG | 0.572747 | 5.2:-16266709 | MS.gene82452:CDS |
| AGTATCTGAGAGAGCAGTGA+GGG | 0.572897 | 5.2:+16277211 | None:intergenic |
| AATCGGTGGTGAAGGAGACA+GGG | 0.576864 | 5.2:-16265791 | MS.gene82452:CDS |
| GTGTCGACAGTGATGTCTCT+CGG | 0.579082 | 5.2:+16267283 | None:intergenic |
| GGATTCACGCCCAACGCTGT+AGG | 0.579907 | 5.2:+16265720 | None:intergenic |
| ACTAGCAAGGGATCAAGGAT+CGG | 0.582652 | 5.2:-16266099 | MS.gene82452:CDS |
| GCCATAGGACCTCTTTACAA+AGG | 0.583066 | 5.2:-16267325 | MS.gene82452:CDS |
| TGTAAGGATGGAAAGAAGAA+GGG | 0.584589 | 5.2:-16266674 | MS.gene82452:CDS |
| AGAAAGGAGGGTATTCTGCT+AGG | 0.587662 | 5.2:-16267084 | MS.gene82452:CDS |
| CATGACAATCGAGAATGTAC+CGG | 0.588067 | 5.2:+16266190 | None:intergenic |
| AAACTTCTCTTAGAAGGTGG+TGG | 0.588555 | 5.2:-16277296 | MS.gene82452:CDS |
| TGTCTCTCGGATAGTTGAGA+TGG | 0.589798 | 5.2:+16267296 | None:intergenic |
| GTTGTTTATGTGCAGCTTGG+GGG | 0.591555 | 5.2:-16276210 | MS.gene82452:intron |
| CAAACACCTGCATTGCATCC+CGG | 0.593582 | 5.2:-16266209 | MS.gene82452:CDS |
| GAGTTTGAGAAATCAGGATA+CGG | 0.596660 | 5.2:-16266242 | MS.gene82452:CDS |
| AGAAGGGTACGTCGGAAACA+TGG | 0.597277 | 5.2:-16266658 | MS.gene82452:CDS |
| AAAAGTGGTAGCTTTAGGAA+GGG | 0.598113 | 5.2:-16277395 | MS.gene82452:CDS |
| CCGAGCACAAAGGCGTCGAA+AGG | 0.598910 | 5.2:+16265856 | None:intergenic |
| TACGTCGGAAACATGGTTGG+TGG | 0.599597 | 5.2:-16266651 | MS.gene82452:CDS |
| AGAACCTACAGGTGCATCTG+AGG | 0.600279 | 5.2:-16266333 | MS.gene82452:CDS |
| TCATATATTTGCACTAGCAA+GGG | 0.601119 | 5.2:-16266111 | MS.gene82452:CDS |
| TGATCAGACGAAGCATTCCT+CGG | 0.603093 | 5.2:+16266722 | None:intergenic |
| CAGGATCAACTGTTGGTGGA+GGG | 0.603150 | 5.2:-16266967 | MS.gene82452:CDS |
| GTAGTTGGTTCCGGCTCAGG+AGG | 0.605970 | 5.2:-16267160 | MS.gene82452:CDS |
| ATTCTCGATTGTCATGCCGT+GGG | 0.607267 | 5.2:-16266183 | MS.gene82452:CDS |
| ATATCGCTTCCAGAAACCCA+CGG | 0.609845 | 5.2:+16266167 | None:intergenic |
| TGAAAAGACTGCGCGAGGAG+TGG | 0.613133 | 5.2:-16266546 | MS.gene82452:CDS |
| TCTCCTAATCTTCTTCACTC+AGG | 0.614451 | 5.2:-16275947 | MS.gene82452:intron |
| CAGTCCGAGATAGAAGAGGA+AGG | 0.614726 | 5.2:-16266806 | MS.gene82452:CDS |
| ACTTTCATCGCTGTACAACC+GGG | 0.614738 | 5.2:+16266596 | None:intergenic |
| TTATCAGGATCAACTGTTGG+TGG | 0.614893 | 5.2:-16266971 | MS.gene82452:CDS |
| GATTGGAACTCATCATAACA+AGG | 0.615247 | 5.2:-16265961 | MS.gene82452:CDS |
| ATCTAATCCGAAGGAATCGG+TGG | 0.618083 | 5.2:-16265805 | MS.gene82452:CDS |
| TGTGCTCGGCACATCAGATG+GGG | 0.623299 | 5.2:-16265842 | MS.gene82452:CDS |
| TAGGTTCTGCAGGTGCATCA+GGG | 0.624788 | 5.2:+16266348 | None:intergenic |
| AGTTCCAATCTCTTCAGCGC+CGG | 0.626568 | 5.2:+16265974 | None:intergenic |
| CTACAGGTGCATCTGAGGTG+TGG | 0.627993 | 5.2:-16266328 | MS.gene82452:CDS |
| TACAAAAGCAAACATGGACA+TGG | 0.629640 | 5.2:-16277450 | None:intergenic |
| TGGAAAGCAATTGGATACTG+TGG | 0.629782 | 5.2:-16267448 | MS.gene82452:CDS |
| AGCAGCGGATTCGTCGTCGT+CGG | 0.630964 | 5.2:+16277154 | None:intergenic |
| ATCCTGTGAATAACATTCCG+AGG | 0.633523 | 5.2:-16266739 | MS.gene82452:CDS |
| AGTTCAGTCCGAGATAGAAG+AGG | 0.634786 | 5.2:-16266810 | MS.gene82452:CDS |
| AAGGTCACAATTGTAGCTTG+TGG | 0.638940 | 5.2:-16266473 | MS.gene82452:CDS |
| AGTGGTGAAAAGACTGCGCG+AGG | 0.639721 | 5.2:-16266551 | MS.gene82452:CDS |
| GCATTTGAATTTGAATACAG+AGG | 0.641551 | 5.2:-16266524 | MS.gene82452:CDS |
| GGGTACGTCGGAAACATGGT+TGG | 0.644062 | 5.2:-16266654 | MS.gene82452:CDS |
| TCGGATGGGATCTAATCCGA+AGG | 0.649402 | 5.2:-16265814 | MS.gene82452:CDS |
| TTCGACGGGTAACCGAGACA+GGG | 0.655689 | 5.2:+16267242 | None:intergenic |
| GTTTGTGTAGAGGTAAATCA+GGG | 0.659201 | 5.2:+16276049 | None:intergenic |
| AGTTATACAATGTGACGCTG+TGG | 0.659608 | 5.2:-16267182 | MS.gene82452:CDS |
| AAACTTGCATCTTCATCCAG+TGG | 0.660254 | 5.2:-16266390 | MS.gene82452:CDS |
| CTCAGCATGTGTGCAAAGAG+TGG | 0.664906 | 5.2:-16266910 | MS.gene82452:CDS |
| ATTGGAACTCATCATAACAA+GGG | 0.666601 | 5.2:-16265960 | MS.gene82452:CDS |
| ATCGGTGGTGAAGGAGACAG+GGG | 0.669474 | 5.2:-16265790 | MS.gene82452:CDS |
| ACTGATTCATCCAATGACAA+TGG | 0.676312 | 5.2:-16276172 | MS.gene82452:CDS |
| GATGATGCTGAACAAGCCAT+AGG | 0.683975 | 5.2:-16267340 | MS.gene82452:CDS |
| CTTGGTGAAATCTGGCAATG+GGG | 0.686289 | 5.2:-16266627 | MS.gene82452:CDS |
| ATCTGATGTGCCGAGCACAA+AGG | 0.687383 | 5.2:+16265846 | None:intergenic |
| GATCAAATGTACCAATCTGG+CGG | 0.687871 | 5.2:-16267028 | MS.gene82452:CDS |
| CACACCTCAGATGCACCTGT+AGG | 0.689664 | 5.2:+16266329 | None:intergenic |
| TGGAAAGAAGAAGGGTACGT+CGG | 0.696204 | 5.2:-16266666 | MS.gene82452:CDS |
| GCTTCGTCTGATCACTACTG+TGG | 0.711953 | 5.2:-16266713 | MS.gene82452:CDS |
| TAGTATCTGAGAGAGCAGTG+AGG | 0.721002 | 5.2:+16277210 | None:intergenic |
| AGGAAGTAAAGACATTTGCG+TGG | 0.724982 | 5.2:-16266504 | MS.gene82452:CDS |
| AATACGGTAGAAGGTAGCAG+CGG | 0.736624 | 5.2:+16277139 | None:intergenic |
| TGAGAAATCAGGATACGGTG+CGG | 0.743954 | 5.2:-16266237 | MS.gene82452:CDS |
| GGGAGGAAAAGATCACACAG+TGG | 0.818391 | 5.2:-16277345 | MS.gene82452:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 16265641 | 16277459 | 16265641 | ID=MS.gene82452 |
| chr5.2 | mRNA | 16265641 | 16277459 | 16265641 | ID=MS.gene82452.t1;Parent=MS.gene82452 |
| chr5.2 | exon | 16277109 | 16277459 | 16277109 | ID=MS.gene82452.t1.exon1;Parent=MS.gene82452.t1 |
| chr5.2 | CDS | 16277109 | 16277459 | 16277109 | ID=cds.MS.gene82452.t1;Parent=MS.gene82452.t1 |
| chr5.2 | exon | 16275948 | 16276217 | 16275948 | ID=MS.gene82452.t1.exon2;Parent=MS.gene82452.t1 |
| chr5.2 | CDS | 16275948 | 16276217 | 16275948 | ID=cds.MS.gene82452.t1;Parent=MS.gene82452.t1 |
| chr5.2 | exon | 16265641 | 16267497 | 16265641 | ID=MS.gene82452.t1.exon3;Parent=MS.gene82452.t1 |
| chr5.2 | CDS | 16265641 | 16267497 | 16265641 | ID=cds.MS.gene82452.t1;Parent=MS.gene82452.t1 |
| Gene Sequence |
| Protein sequence |
