Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86456.t1 | XP_003612495.2 | 96.6 | 815 | 28 | 0 | 11 | 825 | 17 | 831 | 0.00E+00 | 1567 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86456.t1 | O65709 | 59.0 | 751 | 282 | 7 | 74 | 823 | 1 | 726 | 1.2e-248 | 860.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86456.t1 | G7K421 | 96.6 | 815 | 28 | 0 | 11 | 825 | 17 | 831 | 0.0e+00 | 1567.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059420 | MS.gene86456 | 0.819224 | 1.30E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86456 | MS.gene006743 | PPI |
| MS.gene004828 | MS.gene86456 | PPI |
| MS.gene86456 | MS.gene045422 | PPI |
| MS.gene86456 | MS.gene006744 | PPI |
| MS.gene86456 | MS.gene031565 | PPI |
| MS.gene96835 | MS.gene86456 | PPI |
| MS.gene86456 | MS.gene031564 | PPI |
| MS.gene86456 | MS.gene045420 | PPI |
| MS.gene71426 | MS.gene86456 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86456.t1 | MTR_5g025650 | 97.091 | 825 | 24 | 0 | 1 | 825 | 7 | 831 | 0.0 | 1676 |
| MS.gene86456.t1 | MTR_8g072210 | 73.049 | 820 | 210 | 4 | 5 | 823 | 1 | 810 | 0.0 | 1190 |
| MS.gene86456.t1 | MTR_4g080823 | 42.347 | 784 | 387 | 15 | 58 | 821 | 21 | 759 | 0.0 | 576 |
| MS.gene86456.t1 | MTR_4g080890 | 42.621 | 786 | 386 | 15 | 58 | 823 | 12 | 752 | 0.0 | 575 |
| MS.gene86456.t1 | MTR_7g097210 | 42.474 | 784 | 387 | 15 | 50 | 822 | 7 | 737 | 0.0 | 557 |
| MS.gene86456.t1 | MTR_0651s0010 | 42.268 | 679 | 336 | 12 | 58 | 723 | 12 | 647 | 3.75e-164 | 491 |
| MS.gene86456.t1 | MTR_7g097210 | 45.440 | 614 | 279 | 11 | 217 | 822 | 2 | 567 | 7.85e-161 | 480 |
| MS.gene86456.t1 | MTR_1g075650 | 41.063 | 621 | 274 | 13 | 209 | 822 | 3 | 538 | 6.59e-150 | 451 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86456.t1 | AT4G19380 | 57.197 | 792 | 312 | 8 | 34 | 823 | 2 | 768 | 0.0 | 861 |
| MS.gene86456.t1 | AT4G19380 | 58.988 | 751 | 282 | 7 | 74 | 823 | 1 | 726 | 0.0 | 846 |
| MS.gene86456.t1 | AT3G23410 | 39.948 | 771 | 398 | 15 | 69 | 819 | 15 | 740 | 1.70e-175 | 524 |
| MS.gene86456.t1 | AT1G03990 | 38.363 | 782 | 418 | 13 | 61 | 823 | 20 | 756 | 6.00e-175 | 523 |
| MS.gene86456.t1 | AT3G23410 | 41.713 | 712 | 357 | 13 | 121 | 819 | 6 | 672 | 7.33e-173 | 515 |
| MS.gene86456.t1 | AT4G28570 | 39.450 | 763 | 409 | 11 | 69 | 822 | 27 | 745 | 4.76e-172 | 515 |
| MS.gene86456.t1 | AT4G28570 | 39.450 | 763 | 409 | 11 | 69 | 822 | 27 | 745 | 4.76e-172 | 515 |
Find 205 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTCATGCCGTGGGTTTC+TGG | 0.086839 | 5.1:-16059493 | MS.gene86456:CDS |
| ACTCGCGTTCTTTACATTTA+AGG | 0.132660 | 5.1:+16059249 | None:intergenic |
| TTTAACTGAGCTTTGAATTC+TGG | 0.175339 | 5.1:+16060735 | None:intergenic |
| TCAGGGAAAGTGTGTATAAA+AGG | 0.217807 | 5.1:+16067834 | None:intergenic |
| GGAAGCTGTTTGCGAGAAAA+TGG | 0.231686 | 5.1:-16060151 | MS.gene86456:CDS |
| TGGTTTCTGTCTACATGGTT+AGG | 0.272649 | 5.1:-16067900 | MS.gene86456:CDS |
| TACTGTGGATGGTGCTGTTT+GGG | 0.273785 | 5.1:-16060015 | MS.gene86456:CDS |
| TAACAAATTGCTCAAATTCA+TGG | 0.278370 | 5.1:+16059224 | None:intergenic |
| TTGTTCTGAACAACATTCTA+AGG | 0.279704 | 5.1:+16067751 | None:intergenic |
| AACTTTCATCGCTGTACAAC+CGG | 0.293717 | 5.1:+16059912 | None:intergenic |
| GGCAATGGGGCGATTCTTCC+CGG | 0.304802 | 5.1:-16059931 | MS.gene86456:CDS |
| TCATCCAGTGGTAATGGCTT+GGG | 0.309849 | 5.1:-16059695 | MS.gene86456:CDS |
| ATGAATATCTTCATATTATC+AGG | 0.322533 | 5.1:-16060303 | MS.gene86456:CDS |
| GTAGGTTCTGCAGGTGCATC+AGG | 0.324555 | 5.1:+16059664 | None:intergenic |
| TGGAGTTGTAGCCGGAATTC+TGG | 0.330538 | 5.1:-16060454 | MS.gene86456:CDS |
| AACTTTAGTACCATTGTCAT+TGG | 0.342432 | 5.1:+16067930 | None:intergenic |
| ACCGGCATTTGCCAGAATTC+CGG | 0.343046 | 5.1:+16060443 | None:intergenic |
| GCGAAAAGGGTGTCAAGAAA+TGG | 0.352000 | 5.1:-16060082 | MS.gene86456:CDS |
| GTTGCAGAGTTTGAGAAATC+AGG | 0.360781 | 5.1:-16059565 | MS.gene86456:CDS |
| GTCGACACTCTAAGACGATT+TGG | 0.360914 | 5.1:-16060585 | MS.gene86456:CDS |
| ATTGATTGAACAGTGATCAT+TGG | 0.361825 | 5.1:+16059016 | None:intergenic |
| CTACTGTGGATGGTGCTGTT+TGG | 0.368930 | 5.1:-16060016 | MS.gene86456:CDS |
| TGGTACTAAAGTTGGTGTTA+TGG | 0.374436 | 5.1:-16067920 | MS.gene86456:CDS |
| TTTCGACGGGTAACCGAGAC+AGG | 0.374753 | 5.1:+16060558 | None:intergenic |
| GAATCGGTGGTGAAGGAGAC+AGG | 0.376187 | 5.1:-16059109 | MS.gene86456:CDS |
| CGTTTGTGTAGAGGTAAATC+AGG | 0.376447 | 5.1:+16067816 | None:intergenic |
| CACTGCACAATCAGTTCTTC+AGG | 0.380888 | 5.1:-16058984 | MS.gene86456:CDS |
| ATGGGAAAATATACACGTTC+AGG | 0.388465 | 5.1:+16068774 | None:intergenic |
| TGATAAGGTACTGAGAATTC+TGG | 0.393118 | 5.1:-16059320 | MS.gene86456:CDS |
| AATCAGAAGACAATTGTTCA+TGG | 0.394390 | 5.1:-16060785 | MS.gene86456:CDS |
| TTTGTGCTCGGCACATCAGA+TGG | 0.395922 | 5.1:-16059161 | MS.gene86456:CDS |
| TCCTTCACCACCGATTCCTT+CGG | 0.397068 | 5.1:+16059115 | None:intergenic |
| AACAATCTTTCTCTTCTTGA+AGG | 0.398166 | 5.1:-16060378 | MS.gene86456:CDS |
| TTCATCCAGTGGTAATGGCT+TGG | 0.399501 | 5.1:-16059696 | MS.gene86456:CDS |
| AATTGTTCATGGAAAGCAAT+TGG | 0.401562 | 5.1:-16060774 | MS.gene86456:CDS |
| ATTTGAGCAATTTGTTAAAG+AGG | 0.404396 | 5.1:-16059218 | MS.gene86456:CDS |
| CGTATTTCAGCTTCCATGGC+TGG | 0.407420 | 5.1:-16068801 | MS.gene86456:CDS |
| TCACAAACACTCTTTCTCTT+AGG | 0.413754 | 5.1:-16068923 | MS.gene86456:CDS |
| TTCTCAAACTCTGCAACAAC+AGG | 0.414686 | 5.1:+16059571 | None:intergenic |
| GCAGCCGGCGCTGAAGAGAT+TGG | 0.415903 | 5.1:-16059295 | MS.gene86456:CDS |
| GTGGTAGTTGGTTCCGGCTC+AGG | 0.417463 | 5.1:-16060480 | MS.gene86456:CDS |
| TAGAAAGGATAGTTTCAGAT+TGG | 0.419331 | 5.1:-16069045 | MS.gene86456:CDS |
| CAAAACCAACACTTTGTAAC+CGG | 0.424473 | 5.1:+16060425 | None:intergenic |
| CGGTTACAAAGTGTTGGTTT+TGG | 0.424634 | 5.1:-16060424 | MS.gene86456:CDS |
| CGGGATGCAATGCAGGTGTT+TGG | 0.425205 | 5.1:+16059527 | None:intergenic |
| GACGCTGTGGTAGTTGGTTC+CGG | 0.429362 | 5.1:-16060486 | MS.gene86456:CDS |
| GGTTTCTGTCTACATGGTTA+GGG | 0.431876 | 5.1:-16067899 | MS.gene86456:CDS |
| GCATCTTCATCCAGTGGTAA+TGG | 0.432347 | 5.1:-16059701 | MS.gene86456:CDS |
| GGAAGCTGAAATACGGTAGA+AGG | 0.433466 | 5.1:+16068809 | None:intergenic |
| AAGTCGTATAAGTTATGAAA+TGG | 0.433596 | 5.1:-16059377 | MS.gene86456:CDS |
| GCCAACAGATTATGCAATCT+TGG | 0.434426 | 5.1:-16067794 | MS.gene86456:CDS |
| CACATCAGATGGGGTCTTGT+CGG | 0.437145 | 5.1:-16059150 | MS.gene86456:CDS |
| ATGGTGCTGTTTGGGATGTA+AGG | 0.442606 | 5.1:-16060007 | MS.gene86456:CDS |
| AATGTACCAATCTGGCGGTT+TGG | 0.443491 | 5.1:-16060340 | MS.gene86456:CDS |
| GGAAACATGGTTGGTGGACT+TGG | 0.443920 | 5.1:-16059962 | MS.gene86456:CDS |
| AGAAAGGATAGTTTCAGATT+GGG | 0.448247 | 5.1:-16069044 | MS.gene86456:CDS |
| GTGGAGGGTCTGCAATCAAT+TGG | 0.448779 | 5.1:-16060269 | MS.gene86456:CDS |
| TTTACAGAAGGGAATTGATA+AGG | 0.449122 | 5.1:-16059335 | MS.gene86456:CDS |
| CTACCGTATTTCAGCTTCCA+TGG | 0.449137 | 5.1:-16068805 | MS.gene86456:CDS |
| TTACCTGAGTGAAGAAGATT+AGG | 0.450249 | 5.1:+16067712 | None:intergenic |
| AGTGTCTTTCCTACAGCGTT+GGG | 0.451621 | 5.1:-16059046 | MS.gene86456:CDS |
| CGAAAAGGGTGTCAAGAAAT+GGG | 0.454222 | 5.1:-16060081 | MS.gene86456:CDS |
| GACAGGGGAGACATGGGAAG+TGG | 0.458715 | 5.1:-16059092 | MS.gene86456:CDS |
| GATGCACCTGTAGGTTCTGC+AGG | 0.459293 | 5.1:+16059655 | None:intergenic |
| GAGATGGAGAATAGTAATAG+AGG | 0.459800 | 5.1:-16069107 | MS.gene86456:CDS |
| CCCTTTGTAAAGAGGTCCTA+TGG | 0.460808 | 5.1:+16060641 | None:intergenic |
| GTTGGTTCCGGCTCAGGAGG+TGG | 0.462813 | 5.1:-16060474 | MS.gene86456:CDS |
| GGAACAAAGTCATTGATAGA+AGG | 0.463513 | 5.1:+16068861 | None:intergenic |
| ACAAGCTACAATTGTGACCT+TGG | 0.466676 | 5.1:+16059792 | None:intergenic |
| TTGGTGGACTTGGTGAAATC+TGG | 0.468212 | 5.1:-16059952 | MS.gene86456:CDS |
| TGAAGGAGACAGGGGAGACA+TGG | 0.471232 | 5.1:-16059099 | MS.gene86456:CDS |
| AATGACAATGGTACTAAAGT+TGG | 0.471554 | 5.1:-16067928 | MS.gene86456:CDS |
| ACTTGGTGAAATCTGGCAAT+GGG | 0.471710 | 5.1:-16059945 | MS.gene86456:CDS |
| GATTCGTCGTCGTCGGAGAC+AGG | 0.475074 | 5.1:+16068840 | None:intergenic |
| CAGTTCTTCAGGTTCTGAAA+AGG | 0.477971 | 5.1:-16058973 | MS.gene86456:CDS |
| TGTTATGGTTTCTGTCTACA+TGG | 0.479156 | 5.1:-16067905 | MS.gene86456:CDS |
| GAAACCTTCCTCTTCTATCT+CGG | 0.481514 | 5.1:+16060119 | None:intergenic |
| TGAGCTTTGAATTCTGGATC+AGG | 0.482943 | 5.1:+16060741 | None:intergenic |
| ATGGATCAAATGTACCAATC+TGG | 0.485800 | 5.1:-16060348 | MS.gene86456:CDS |
| TAGGAAGGGTAGCGTTAGAA+AGG | 0.486877 | 5.1:-16069060 | MS.gene86456:CDS |
| CTCATATATTTGCACTAGCA+AGG | 0.487990 | 5.1:-16059429 | MS.gene86456:CDS |
| TTGTGCTCGGCACATCAGAT+GGG | 0.494296 | 5.1:-16059160 | MS.gene86456:CDS |
| CAGGGAAAGTGTGTATAAAA+GGG | 0.494879 | 5.1:+16067835 | None:intergenic |
| CCATAGGACCTCTTTACAAA+GGG | 0.499145 | 5.1:-16060641 | MS.gene86456:CDS |
| CATTCTCGATTGTCATGCCG+TGG | 0.499519 | 5.1:-16059501 | MS.gene86456:CDS |
| GGGATCTAATCCGAAGGAAT+CGG | 0.502365 | 5.1:-16059125 | MS.gene86456:CDS |
| GACTTGGTGAAATCTGGCAA+TGG | 0.502806 | 5.1:-16059946 | MS.gene86456:CDS |
| CTGAGGTGTGGCCCGAGACA+TGG | 0.502920 | 5.1:-16059633 | MS.gene86456:CDS |
| AATGTACCGGGATGCAATGC+AGG | 0.504077 | 5.1:+16059520 | None:intergenic |
| CGAATTGTATCAAGAAGCTA+TGG | 0.505419 | 5.1:-16060172 | MS.gene86456:CDS |
| ATATTATCAGGATCAACTGT+TGG | 0.505490 | 5.1:-16060291 | MS.gene86456:CDS |
| TCACATTGTATAACTAAAGA+AGG | 0.507906 | 5.1:+16060507 | None:intergenic |
| TCAGATGGGGTCTTGTCGGA+TGG | 0.510460 | 5.1:-16059146 | MS.gene86456:CDS |
| TGGTACATTTGATCCATTGT+TGG | 0.511444 | 5.1:+16060354 | None:intergenic |
| AAGTGTCTTTCCTACAGCGT+TGG | 0.513668 | 5.1:-16059047 | MS.gene86456:CDS |
| AAAGAAGGAGATGATAAGCT+TGG | 0.514270 | 5.1:+16060522 | None:intergenic |
| GTGTATAAAAGGGAACTTTG+TGG | 0.515128 | 5.1:+16067845 | None:intergenic |
| TCTTCTTGAAGGACCAACAA+TGG | 0.515800 | 5.1:-16060367 | MS.gene86456:CDS |
| TCCGAAGGAATCGGTGGTGA+AGG | 0.516816 | 5.1:-16059116 | MS.gene86456:CDS |
| TACAACTCCACCTCCTGAGC+CGG | 0.517239 | 5.1:+16060467 | None:intergenic |
| CCTTTCGACGCCTTTGTGCT+CGG | 0.518797 | 5.1:-16059173 | MS.gene86456:CDS |
| CATCCAGTGGTAATGGCTTG+GGG | 0.521437 | 5.1:-16059694 | MS.gene86456:CDS |
| TTGCAACCAAACCGCCAGAT+TGG | 0.521706 | 5.1:+16060334 | None:intergenic |
| ATGTAAGGATGGAAAGAAGA+AGG | 0.521921 | 5.1:-16059992 | MS.gene86456:CDS |
| AAACTTCTCTTAGAAGGTGG+TGG | 0.524845 | 5.1:-16068975 | MS.gene86456:CDS |
| TTGTTAAAGAGGAAAGTTCA+AGG | 0.527664 | 5.1:-16059207 | MS.gene86456:CDS |
| TTCCTCGGAATGTTATTCAC+AGG | 0.528834 | 5.1:+16060054 | None:intergenic |
| CCATCATTGCTTAAAAGAAG+CGG | 0.529615 | 5.1:-16059754 | MS.gene86456:CDS |
| GAAGCTGTTTGCGAGAAAAT+GGG | 0.530053 | 5.1:-16060150 | MS.gene86456:CDS |
| CAGCCATGGAAGCTGAAATA+CGG | 0.530516 | 5.1:+16068802 | None:intergenic |
| ATCTGTTGGCGTTTGTGTAG+AGG | 0.531304 | 5.1:+16067807 | None:intergenic |
| TTTGCACTAGCAAGGGATCA+AGG | 0.531399 | 5.1:-16059421 | MS.gene86456:CDS |
| ATTTCATAACTTATACGACT+TGG | 0.533418 | 5.1:+16059379 | None:intergenic |
| CTGAGAATTCTGGCTGCAGC+CGG | 0.533445 | 5.1:-16059310 | MS.gene86456:CDS |
| TGCTGTTTGGGATGTAAGGA+TGG | 0.534914 | 5.1:-16060003 | MS.gene86456:CDS |
| CTAGCAAGGGATCAAGGATC+GGG | 0.535447 | 5.1:-16059415 | MS.gene86456:CDS |
| GCCGGAATTCTGGCAAATGC+CGG | 0.537102 | 5.1:-16060444 | MS.gene86456:CDS |
| ATGACAATCGAGAATGTACC+GGG | 0.538959 | 5.1:+16059508 | None:intergenic |
| AGCAAACATGGACATGGAGA+TGG | 0.539353 | 5.1:-16069123 | None:intergenic |
| AAATGCCGGTTACAAAGTGT+TGG | 0.540631 | 5.1:-16060430 | MS.gene86456:CDS |
| TCAGGAGGTGGAGTTGTAGC+CGG | 0.545470 | 5.1:-16060462 | MS.gene86456:CDS |
| AAGGATAGTTTCAGATTGGG+AGG | 0.546950 | 5.1:-16069041 | MS.gene86456:CDS |
| GAAGGAGACAGGGGAGACAT+GGG | 0.547527 | 5.1:-16059098 | MS.gene86456:CDS |
| TCAGGATCAACTGTTGGTGG+AGG | 0.550654 | 5.1:-16060285 | MS.gene86456:CDS |
| ACGTTCAGGTGTTCCAGCCA+TGG | 0.550679 | 5.1:+16068788 | None:intergenic |
| CAATGTGACGCTGTGGTAGT+TGG | 0.551132 | 5.1:-16060492 | MS.gene86456:CDS |
| TGGACAAGCCCTTTGTAAAG+AGG | 0.551242 | 5.1:+16060633 | None:intergenic |
| ACCAAGATTGCATAATCTGT+TGG | 0.551313 | 5.1:+16067793 | None:intergenic |
| CAGATGGGGTCTTGTCGGAT+GGG | 0.552514 | 5.1:-16059145 | MS.gene86456:CDS |
| GATCACACAGTGGTTGAGCT+AGG | 0.554204 | 5.1:-16069014 | MS.gene86456:CDS |
| CTTCTCTTAGAAGGTGGTGG+AGG | 0.555819 | 5.1:-16068972 | MS.gene86456:CDS |
| ACGATTTGGATTCCCTGTCT+CGG | 0.555886 | 5.1:-16060571 | MS.gene86456:CDS |
| CACTCTTTGCACACATGCTG+AGG | 0.558971 | 5.1:+16060228 | None:intergenic |
| CATTTGCGTGGTCGAATCCA+AGG | 0.560871 | 5.1:-16059809 | MS.gene86456:CDS |
| GATGCACCTGCAGAACCTAC+AGG | 0.561208 | 5.1:-16059661 | MS.gene86456:CDS |
| GATGAAGAGAATTTACAGAA+GGG | 0.562115 | 5.1:-16059346 | MS.gene86456:CDS |
| TGATGAAGAGAATTTACAGA+AGG | 0.564493 | 5.1:-16059347 | MS.gene86456:CDS |
| AGGGGAGACATGGGAAGTGG+AGG | 0.564528 | 5.1:-16059089 | MS.gene86456:CDS |
| TAGCCCCAAGCCATTACCAC+TGG | 0.566718 | 5.1:+16059691 | None:intergenic |
| CGTCTGATCACTACTGTGGA+TGG | 0.572747 | 5.1:-16060026 | MS.gene86456:CDS |
| AGTATCTGAGAGAGCAGTGA+GGG | 0.572897 | 5.1:+16068890 | None:intergenic |
| AATCGGTGGTGAAGGAGACA+GGG | 0.576864 | 5.1:-16059108 | MS.gene86456:CDS |
| GTGTCGACAGTGATGTCTCT+CGG | 0.579082 | 5.1:+16060600 | None:intergenic |
| GGATTCACGCCCAACGCTGT+AGG | 0.579907 | 5.1:+16059037 | None:intergenic |
| ACTAGCAAGGGATCAAGGAT+CGG | 0.582652 | 5.1:-16059416 | MS.gene86456:CDS |
| GCCATAGGACCTCTTTACAA+AGG | 0.583066 | 5.1:-16060642 | MS.gene86456:CDS |
| TGTAAGGATGGAAAGAAGAA+GGG | 0.584589 | 5.1:-16059991 | MS.gene86456:CDS |
| AGAAAGGAGGGTATTCTGCT+AGG | 0.587662 | 5.1:-16060401 | MS.gene86456:CDS |
| CATGACAATCGAGAATGTAC+CGG | 0.588067 | 5.1:+16059507 | None:intergenic |
| TGTCTCTCGGATAGTTGAGA+TGG | 0.589798 | 5.1:+16060613 | None:intergenic |
| GTTGTTTATGTGCAGCTTGG+GGG | 0.591555 | 5.1:-16067978 | MS.gene86456:intron |
| CAAACACCTGCATTGCATCC+CGG | 0.593582 | 5.1:-16059526 | MS.gene86456:CDS |
| GAGTTTGAGAAATCAGGATA+CGG | 0.596660 | 5.1:-16059559 | MS.gene86456:CDS |
| AGAAGGGTACGTCGGAAACA+TGG | 0.597277 | 5.1:-16059975 | MS.gene86456:CDS |
| AAAAGTGGTAGCTTTAGGAA+GGG | 0.598113 | 5.1:-16069074 | MS.gene86456:CDS |
| CCGAGCACAAAGGCGTCGAA+AGG | 0.598910 | 5.1:+16059173 | None:intergenic |
| TACGTCGGAAACATGGTTGG+TGG | 0.599597 | 5.1:-16059968 | MS.gene86456:CDS |
| AGAACCTACAGGTGCATCTG+AGG | 0.600279 | 5.1:-16059650 | MS.gene86456:CDS |
| TCATATATTTGCACTAGCAA+GGG | 0.601119 | 5.1:-16059428 | MS.gene86456:CDS |
| TGATCAGACGAAGCATTCCT+CGG | 0.603093 | 5.1:+16060039 | None:intergenic |
| CAGGATCAACTGTTGGTGGA+GGG | 0.603150 | 5.1:-16060284 | MS.gene86456:CDS |
| GTAGTTGGTTCCGGCTCAGG+AGG | 0.605970 | 5.1:-16060477 | MS.gene86456:CDS |
| ATTCTCGATTGTCATGCCGT+GGG | 0.607267 | 5.1:-16059500 | MS.gene86456:CDS |
| ATATCGCTTCCAGAAACCCA+CGG | 0.609845 | 5.1:+16059484 | None:intergenic |
| TGAAAAGACTGCGCGAGGAG+TGG | 0.613133 | 5.1:-16059863 | MS.gene86456:CDS |
| TCTCCTAATCTTCTTCACTC+AGG | 0.614451 | 5.1:-16067715 | MS.gene86456:intron |
| CAGTCCGAGATAGAAGAGGA+AGG | 0.614726 | 5.1:-16060123 | MS.gene86456:CDS |
| ACTTTCATCGCTGTACAACC+GGG | 0.614738 | 5.1:+16059913 | None:intergenic |
| TTATCAGGATCAACTGTTGG+TGG | 0.614893 | 5.1:-16060288 | MS.gene86456:CDS |
| GATTGGAACTCATCATAACA+AGG | 0.615247 | 5.1:-16059278 | MS.gene86456:CDS |
| ATCTAATCCGAAGGAATCGG+TGG | 0.618083 | 5.1:-16059122 | MS.gene86456:CDS |
| TGTGCTCGGCACATCAGATG+GGG | 0.623299 | 5.1:-16059159 | MS.gene86456:CDS |
| TAGGTTCTGCAGGTGCATCA+GGG | 0.624788 | 5.1:+16059665 | None:intergenic |
| AGTTCCAATCTCTTCAGCGC+CGG | 0.626568 | 5.1:+16059291 | None:intergenic |
| CTACAGGTGCATCTGAGGTG+TGG | 0.627993 | 5.1:-16059645 | MS.gene86456:CDS |
| TACAAAAGCAAACATGGACA+TGG | 0.629640 | 5.1:-16069129 | None:intergenic |
| TGGAAAGCAATTGGATACTG+TGG | 0.629782 | 5.1:-16060765 | MS.gene86456:CDS |
| AGCAGCGGATTCGTCGTCGT+CGG | 0.630964 | 5.1:+16068833 | None:intergenic |
| ATCCTGTGAATAACATTCCG+AGG | 0.633523 | 5.1:-16060056 | MS.gene86456:CDS |
| AGTTCAGTCCGAGATAGAAG+AGG | 0.634786 | 5.1:-16060127 | MS.gene86456:CDS |
| AAGGTCACAATTGTAGCTTG+TGG | 0.638940 | 5.1:-16059790 | MS.gene86456:CDS |
| AGTGGTGAAAAGACTGCGCG+AGG | 0.639721 | 5.1:-16059868 | MS.gene86456:CDS |
| GCATTTGAATTTGAATACAG+AGG | 0.641551 | 5.1:-16059841 | MS.gene86456:CDS |
| GGGTACGTCGGAAACATGGT+TGG | 0.644062 | 5.1:-16059971 | MS.gene86456:CDS |
| TCGGATGGGATCTAATCCGA+AGG | 0.649402 | 5.1:-16059131 | MS.gene86456:CDS |
| TTCGACGGGTAACCGAGACA+GGG | 0.655689 | 5.1:+16060559 | None:intergenic |
| GTTTGTGTAGAGGTAAATCA+GGG | 0.659201 | 5.1:+16067817 | None:intergenic |
| AGTTATACAATGTGACGCTG+TGG | 0.659608 | 5.1:-16060499 | MS.gene86456:CDS |
| AAACTTGCATCTTCATCCAG+TGG | 0.660254 | 5.1:-16059707 | MS.gene86456:CDS |
| CTCAGCATGTGTGCAAAGAG+TGG | 0.664906 | 5.1:-16060227 | MS.gene86456:CDS |
| ATTGGAACTCATCATAACAA+GGG | 0.666601 | 5.1:-16059277 | MS.gene86456:CDS |
| ATCGGTGGTGAAGGAGACAG+GGG | 0.669474 | 5.1:-16059107 | MS.gene86456:CDS |
| ACTGATTCATCCAATGACAA+TGG | 0.676312 | 5.1:-16067940 | MS.gene86456:CDS |
| GATGATGCTGAACAAGCCAT+AGG | 0.683975 | 5.1:-16060657 | MS.gene86456:CDS |
| CTTGGTGAAATCTGGCAATG+GGG | 0.686289 | 5.1:-16059944 | MS.gene86456:CDS |
| ATCTGATGTGCCGAGCACAA+AGG | 0.687383 | 5.1:+16059163 | None:intergenic |
| GATCAAATGTACCAATCTGG+CGG | 0.687871 | 5.1:-16060345 | MS.gene86456:CDS |
| CACACCTCAGATGCACCTGT+AGG | 0.689664 | 5.1:+16059646 | None:intergenic |
| TGGAAAGAAGAAGGGTACGT+CGG | 0.696204 | 5.1:-16059983 | MS.gene86456:CDS |
| GCTTCGTCTGATCACTACTG+TGG | 0.711953 | 5.1:-16060030 | MS.gene86456:CDS |
| TAGTATCTGAGAGAGCAGTG+AGG | 0.721002 | 5.1:+16068889 | None:intergenic |
| AGGAAGTAAAGACATTTGCG+TGG | 0.724982 | 5.1:-16059821 | MS.gene86456:CDS |
| AATACGGTAGAAGGTAGCAG+CGG | 0.736624 | 5.1:+16068818 | None:intergenic |
| TGAGAAATCAGGATACGGTG+CGG | 0.743954 | 5.1:-16059554 | MS.gene86456:CDS |
| GGGAGGAAAAGATCACACAG+TGG | 0.818391 | 5.1:-16069024 | MS.gene86456:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 16058958 | 16069138 | 16058958 | ID=MS.gene86456 |
| chr5.1 | mRNA | 16058958 | 16069138 | 16058958 | ID=MS.gene86456.t1;Parent=MS.gene86456 |
| chr5.1 | exon | 16068788 | 16069138 | 16068788 | ID=MS.gene86456.t1.exon1;Parent=MS.gene86456.t1 |
| chr5.1 | CDS | 16068788 | 16069138 | 16068788 | ID=cds.MS.gene86456.t1;Parent=MS.gene86456.t1 |
| chr5.1 | exon | 16067716 | 16067985 | 16067716 | ID=MS.gene86456.t1.exon2;Parent=MS.gene86456.t1 |
| chr5.1 | CDS | 16067716 | 16067985 | 16067716 | ID=cds.MS.gene86456.t1;Parent=MS.gene86456.t1 |
| chr5.1 | exon | 16058958 | 16060814 | 16058958 | ID=MS.gene86456.t1.exon3;Parent=MS.gene86456.t1 |
| chr5.1 | CDS | 16058958 | 16060814 | 16058958 | ID=cds.MS.gene86456.t1;Parent=MS.gene86456.t1 |
| Gene Sequence |
| Protein sequence |
