Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004836.t1 | XP_013467901.1 | 62.2 | 550 | 172 | 11 | 64 | 598 | 32 | 560 | 4.80E-171 | 611.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004836.t1 | Q9FLH8 | 69.1 | 314 | 95 | 1 | 283 | 596 | 23 | 334 | 1.8e-118 | 427.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004836.t1 | A0A072VKK1 | 62.2 | 550 | 172 | 11 | 64 | 598 | 32 | 560 | 3.5e-171 | 611.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85276 | MS.gene004836 | PPI |
| MS.gene004836 | MS.gene003877 | PPI |
| MS.gene052011 | MS.gene004836 | PPI |
| MS.gene032177 | MS.gene004836 | PPI |
| MS.gene056386 | MS.gene004836 | PPI |
| MS.gene98726 | MS.gene004836 | PPI |
| MS.gene28335 | MS.gene004836 | PPI |
| MS.gene46881 | MS.gene004836 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004836.t1 | MTR_1g057810 | 61.336 | 569 | 185 | 10 | 44 | 598 | 13 | 560 | 0.0 | 594 |
| MS.gene004836.t1 | MTR_1g069490 | 69.053 | 433 | 101 | 5 | 169 | 601 | 1 | 400 | 0.0 | 565 |
| MS.gene004836.t1 | MTR_1g105150 | 59.051 | 569 | 184 | 11 | 44 | 598 | 13 | 546 | 0.0 | 561 |
| MS.gene004836.t1 | MTR_1g101950 | 79.518 | 332 | 65 | 2 | 270 | 601 | 11 | 339 | 0.0 | 515 |
| MS.gene004836.t1 | MTR_6g089480 | 74.839 | 310 | 76 | 1 | 290 | 599 | 1 | 308 | 7.20e-162 | 465 |
| MS.gene004836.t1 | MTR_6g089480 | 73.358 | 274 | 71 | 1 | 290 | 563 | 1 | 272 | 3.60e-137 | 400 |
| MS.gene004836.t1 | MTR_6g089480 | 73.897 | 272 | 69 | 1 | 290 | 561 | 1 | 270 | 4.61e-137 | 400 |
| MS.gene004836.t1 | MTR_5g079460 | 65.528 | 322 | 106 | 4 | 278 | 598 | 62 | 379 | 6.72e-133 | 394 |
| MS.gene004836.t1 | MTR_1g069745 | 68.707 | 294 | 78 | 3 | 308 | 601 | 8 | 287 | 9.87e-128 | 377 |
| MS.gene004836.t1 | MTR_1g076850 | 55.205 | 317 | 138 | 3 | 283 | 599 | 8 | 320 | 6.18e-119 | 356 |
| MS.gene004836.t1 | MTR_4g067310 | 56.740 | 319 | 134 | 2 | 281 | 599 | 13 | 327 | 1.04e-117 | 353 |
| MS.gene004836.t1 | MTR_2g098950 | 55.172 | 319 | 139 | 2 | 281 | 599 | 12 | 326 | 4.89e-117 | 351 |
| MS.gene004836.t1 | MTR_7g075860 | 55.660 | 318 | 137 | 2 | 283 | 598 | 41 | 356 | 4.49e-113 | 342 |
| MS.gene004836.t1 | MTR_1g054730 | 56.173 | 324 | 102 | 4 | 276 | 599 | 104 | 387 | 2.56e-99 | 308 |
| MS.gene004836.t1 | MTR_1g054730 | 41.739 | 115 | 23 | 3 | 39 | 145 | 80 | 158 | 8.69e-14 | 73.9 |
| MS.gene004836.t1 | MTR_0046s0180 | 76.636 | 107 | 23 | 1 | 493 | 599 | 5 | 109 | 5.86e-49 | 166 |
| MS.gene004836.t1 | MTR_1g069480 | 77.273 | 110 | 22 | 2 | 104 | 211 | 7 | 115 | 1.04e-48 | 166 |
| MS.gene004836.t1 | MTR_5g044990 | 28.779 | 344 | 210 | 7 | 283 | 594 | 210 | 550 | 1.18e-40 | 156 |
| MS.gene004836.t1 | MTR_4g019165 | 29.132 | 357 | 210 | 6 | 283 | 596 | 93 | 449 | 5.82e-40 | 152 |
| MS.gene004836.t1 | MTR_8g096570 | 40.777 | 206 | 95 | 5 | 46 | 248 | 68 | 249 | 1.06e-36 | 146 |
| MS.gene004836.t1 | MTR_0046s0210 | 50.000 | 158 | 48 | 4 | 206 | 337 | 1 | 153 | 4.15e-33 | 124 |
| MS.gene004836.t1 | MTR_1g071270 | 48.485 | 99 | 37 | 4 | 145 | 234 | 10 | 103 | 3.27e-15 | 73.9 |
| MS.gene004836.t1 | MTR_1g071290 | 65.116 | 43 | 15 | 0 | 103 | 145 | 7 | 49 | 1.33e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004836.t1 | AT5G51830 | 69.108 | 314 | 95 | 1 | 283 | 596 | 23 | 334 | 5.81e-149 | 433 |
| MS.gene004836.t1 | AT5G51830 | 69.108 | 314 | 95 | 1 | 283 | 596 | 23 | 334 | 5.81e-149 | 433 |
| MS.gene004836.t1 | AT1G66430 | 63.804 | 326 | 113 | 4 | 272 | 596 | 54 | 375 | 9.71e-137 | 404 |
| MS.gene004836.t1 | AT4G10260 | 59.677 | 310 | 121 | 3 | 283 | 592 | 6 | 311 | 1.59e-121 | 362 |
| MS.gene004836.t1 | AT1G06030 | 53.636 | 330 | 149 | 2 | 273 | 602 | 1 | 326 | 1.66e-116 | 350 |
| MS.gene004836.t1 | AT2G31390 | 54.489 | 323 | 143 | 3 | 277 | 599 | 3 | 321 | 1.23e-115 | 347 |
| MS.gene004836.t1 | AT1G06020 | 53.145 | 318 | 145 | 2 | 282 | 599 | 9 | 322 | 4.57e-112 | 339 |
| MS.gene004836.t1 | AT3G59480 | 53.292 | 319 | 145 | 3 | 278 | 596 | 5 | 319 | 4.57e-112 | 338 |
| MS.gene004836.t1 | AT3G54090 | 31.092 | 357 | 202 | 8 | 283 | 596 | 103 | 458 | 2.07e-42 | 159 |
| MS.gene004836.t1 | AT1G50390 | 45.930 | 172 | 60 | 1 | 428 | 599 | 1 | 139 | 2.76e-40 | 144 |
| MS.gene004836.t1 | AT1G69200 | 29.091 | 330 | 198 | 7 | 283 | 579 | 206 | 532 | 7.07e-39 | 151 |
| MS.gene004836.t1 | AT5G63540 | 35.115 | 262 | 152 | 9 | 10 | 262 | 40 | 292 | 1.26e-28 | 121 |
| MS.gene004836.t1 | AT5G63540 | 36.681 | 229 | 129 | 7 | 10 | 230 | 40 | 260 | 2.34e-28 | 120 |
Find 157 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATGGAACTCTTAAATTTA+TGG | 0.120375 | 1.4:-61991519 | MS.gene004836:CDS |
| CAACTAGGGGATTTGTTAAA+TGG | 0.198919 | 1.4:-61992186 | MS.gene004836:CDS |
| TCCTAACCCTAGTGAATTAA+AGG | 0.212937 | 1.4:-61992082 | MS.gene004836:CDS |
| GGTTCCGAGGGAACTCTTTC+AGG | 0.225694 | 1.4:+61992399 | None:intergenic |
| GTGTGTGCCTCTTGGATTAA+AGG | 0.266846 | 1.4:-61991754 | MS.gene004836:intron |
| GAAGCTTGAGATTAGGATTA+GGG | 0.284752 | 1.4:+61989863 | None:intergenic |
| CAGGCTAAAATATTCCATTA+TGG | 0.292003 | 1.4:-61990267 | MS.gene004836:CDS |
| ATGGAATAGAGAAGCTAATA+AGG | 0.301023 | 1.4:-61991500 | MS.gene004836:CDS |
| GAAAATAATGTTGATATATC+TGG | 0.307506 | 1.4:-61990509 | MS.gene004836:CDS |
| CGATGGTCCCTTCATATTGC+AGG | 0.320003 | 1.4:-61992046 | MS.gene004836:intron |
| GATCGGAAAACAGAAACTTT+TGG | 0.338067 | 1.4:+61992130 | None:intergenic |
| ACTCTTTCAGGTTGGTTAAC+GGG | 0.342290 | 1.4:+61992411 | None:intergenic |
| CTCAAGCTTCTAATTGTTAC+CGG | 0.347684 | 1.4:-61989850 | MS.gene004836:CDS |
| TAGGTTGGATCAGATGAATA+TGG | 0.354743 | 1.4:-61990557 | MS.gene004836:CDS |
| AGAAGCTTGAGATTAGGATT+AGG | 0.357593 | 1.4:+61989862 | None:intergenic |
| GATGGTGTTCATACAGTCTA+TGG | 0.360293 | 1.4:-61991822 | MS.gene004836:CDS |
| AGTGGACTGGTTGTTTGTTT+TGG | 0.362156 | 1.4:-61991322 | MS.gene004836:CDS |
| TTATCAATTTCTGTACTCAT+TGG | 0.363528 | 1.4:-61991905 | MS.gene004836:CDS |
| CGAAATTGAGATTGGCACTA+TGG | 0.364731 | 1.4:-61990152 | MS.gene004836:CDS |
| CCTATATTGCATAAAATTGC+AGG | 0.366702 | 1.4:+61989221 | None:intergenic |
| CATAGTGCCAATCTCAATTT+CGG | 0.370602 | 1.4:+61990153 | None:intergenic |
| GCAGTTGGCATCTCTAAGTT+GGG | 0.396668 | 1.4:-61991202 | MS.gene004836:CDS |
| TCAAACCGATGGAACCATAA+TGG | 0.399197 | 1.4:+61990253 | None:intergenic |
| TATCAATTTCTGTACTCATT+GGG | 0.402045 | 1.4:-61991904 | MS.gene004836:CDS |
| TCCTAGTGCTGATTTGAATC+TGG | 0.402847 | 1.4:-61990399 | MS.gene004836:CDS |
| ACAATTAGAAGCTTGAGATT+AGG | 0.402862 | 1.4:+61989856 | None:intergenic |
| AACTCTTTCAGGTTGGTTAA+CGG | 0.403966 | 1.4:+61992410 | None:intergenic |
| CTGATTGTCTTCGGCAACTA+GGG | 0.404237 | 1.4:-61992200 | MS.gene004836:CDS |
| CCCTTTAATTCACTAGGGTT+AGG | 0.423783 | 1.4:+61992081 | None:intergenic |
| GGCAGTTGGCATCTCTAAGT+TGG | 0.428328 | 1.4:-61991203 | MS.gene004836:CDS |
| CAACGTTGACTGACTGTGAC+TGG | 0.429125 | 1.4:+61991541 | None:intergenic |
| TGAATTACCTCGAAAATACT+TGG | 0.436297 | 1.4:+61989428 | None:intergenic |
| CCTTCTGTTATGAGATCATC+AGG | 0.436948 | 1.4:+61991358 | None:intergenic |
| AGGTTGGATCAGATGAATAT+GGG | 0.438767 | 1.4:-61990556 | MS.gene004836:CDS |
| AAAAGGTTGCTGATTGTCTT+CGG | 0.439081 | 1.4:-61992209 | MS.gene004836:CDS |
| GTTTGTGCGTGTGTGCCTCT+TGG | 0.441601 | 1.4:-61991762 | MS.gene004836:CDS |
| CCGATCACCTTCTCAAACTC+GGG | 0.442267 | 1.4:-61992248 | MS.gene004836:CDS |
| GAAACAGATGGAGGCGGCGG+TGG | 0.444157 | 1.4:+61992342 | None:intergenic |
| GTTAAACCTGTCGACACAAC+TGG | 0.447474 | 1.4:-61989500 | MS.gene004836:CDS |
| CTGGTGATGCATTTGTTAGT+GGG | 0.458027 | 1.4:-61989475 | MS.gene004836:CDS |
| GCATCTAGCCGATGTCATAA+AGG | 0.459308 | 1.4:-61990088 | MS.gene004836:intron |
| TTATATTTCGCCAATGTATG+TGG | 0.459869 | 1.4:-61989301 | MS.gene004836:CDS |
| GCTGGTGATGCATTTGTTAG+TGG | 0.461233 | 1.4:-61989476 | MS.gene004836:CDS |
| ACGAACAAAACCATGGGAAA+GGG | 0.462081 | 1.4:-61992468 | None:intergenic |
| CTCTTTCAGGTTGGTTAACG+GGG | 0.464353 | 1.4:+61992412 | None:intergenic |
| TCTGGTTACAAGAAAGCTAT+TGG | 0.470303 | 1.4:-61991244 | MS.gene004836:CDS |
| TCCGATCACCTTCTCAAACT+CGG | 0.475206 | 1.4:-61992249 | MS.gene004836:CDS |
| GATGGAGGCGGCGGTGGAAG+AGG | 0.476122 | 1.4:+61992348 | None:intergenic |
| GCTGATTGTCTTCGGCAACT+AGG | 0.476467 | 1.4:-61992201 | MS.gene004836:CDS |
| GACGGTGCATCAAAAGAGAT+TGG | 0.476519 | 1.4:+61991265 | None:intergenic |
| AGGTTGGTTAACGGGGCAAT+CGG | 0.481730 | 1.4:+61992320 | None:intergenic |
| GTTTAGTTTGAAGAGAGAAA+AGG | 0.484229 | 1.4:-61992226 | MS.gene004836:CDS |
| CTTCGAGCAGCCTCGGCTGA+TGG | 0.484267 | 1.4:+61990129 | None:intergenic |
| GAATCTCTTCCCCTTTCCCA+TGG | 0.488948 | 1.4:+61992458 | None:intergenic |
| CACAGTCAGTCAACGTTGCA+TGG | 0.493522 | 1.4:-61991536 | MS.gene004836:CDS |
| ACCCGTCGACGATGACTTGA+CGG | 0.493673 | 1.4:-61992280 | MS.gene004836:CDS |
| GTCCGTCAAGTCATCGTCGA+CGG | 0.494541 | 1.4:+61992278 | None:intergenic |
| GAAGTGGTATAATGAGCATA+TGG | 0.496433 | 1.4:-61990110 | MS.gene004836:CDS |
| GAAACCAACCTGCAATATGA+AGG | 0.498129 | 1.4:+61992038 | None:intergenic |
| AAGGGGCAACAGCGGTTGAC+GGG | 0.500000 | 1.4:+61992378 | None:intergenic |
| CAGTTGGCATCTCTAAGTTG+GGG | 0.501143 | 1.4:-61991201 | MS.gene004836:CDS |
| CTTGAATGGCTTCAAGAGGC+TGG | 0.502201 | 1.4:+61991784 | None:intergenic |
| GTATGATCCGAAATTGAGAT+TGG | 0.502636 | 1.4:-61990160 | MS.gene004836:CDS |
| CCTAACCCTAGTGAATTAAA+GGG | 0.505595 | 1.4:-61992081 | MS.gene004836:CDS |
| AATACAACATCATCATCATA+AGG | 0.505738 | 1.4:+61989901 | None:intergenic |
| CACACACGCACAAACTTGAA+TGG | 0.506381 | 1.4:+61991770 | None:intergenic |
| TACCTCCTCCAGGTATTGAT+AGG | 0.507224 | 1.4:-61991866 | MS.gene004836:CDS |
| AAGCTTCTAATTGTTACCGG+TGG | 0.508177 | 1.4:-61989847 | MS.gene004836:CDS |
| TTCTAATTTCAACAACGCAT+TGG | 0.508694 | 1.4:-61990474 | MS.gene004836:CDS |
| TCTAATGTAGAGGCGTTCAA+TGG | 0.513317 | 1.4:-61991622 | MS.gene004836:CDS |
| ATGCAGTACCTCCTGTGTCC+AGG | 0.517307 | 1.4:-61991477 | MS.gene004836:intron |
| TCCGTCAAGTCATCGTCGAC+GGG | 0.517652 | 1.4:+61992279 | None:intergenic |
| AAAATTTACCTTTATGACAT+CGG | 0.519416 | 1.4:+61990080 | None:intergenic |
| ATATTCCATTATGGTTCCAT+CGG | 0.520210 | 1.4:-61990258 | MS.gene004836:CDS |
| AATTGTTACCGGTGGGTCGG+AGG | 0.520536 | 1.4:-61989839 | MS.gene004836:CDS |
| GAAGGGGCAACAGCGGTTGA+CGG | 0.523493 | 1.4:+61992377 | None:intergenic |
| AATATTAGAGTATTGGGAGG+AGG | 0.525399 | 1.4:-61991577 | MS.gene004836:CDS |
| AGGTTGGTTAACGGGGCAAT+CGG | 0.525575 | 1.4:+61992419 | None:intergenic |
| TTTGAGAAGGTGATCGGAGA+CGG | 0.526073 | 1.4:+61992254 | None:intergenic |
| GCAATCACGGTGACAGAGAG+AGG | 0.526214 | 1.4:-61989277 | MS.gene004836:CDS |
| CCTGTCGACACAACTGGTGC+TGG | 0.527503 | 1.4:-61989494 | MS.gene004836:CDS |
| GTTCTGCCCTTTAATTCACT+AGG | 0.534444 | 1.4:+61992075 | None:intergenic |
| CCAGCACCAGTTGTGTCGAC+AGG | 0.534814 | 1.4:+61989494 | None:intergenic |
| TATACCACTTCGAGCAGCCT+CGG | 0.539494 | 1.4:+61990122 | None:intergenic |
| CGTGATTGCGCCACATACAT+TGG | 0.539771 | 1.4:+61989291 | None:intergenic |
| CGGTGGAAGAGGATATATGA+AGG | 0.540842 | 1.4:+61992359 | None:intergenic |
| AGCTTCTAATTGTTACCGGT+GGG | 0.541169 | 1.4:-61989846 | MS.gene004836:CDS |
| ATTGTTACCGGTGGGTCGGA+GGG | 0.542489 | 1.4:-61989838 | MS.gene004836:CDS |
| TTCATCTGCATTTATAAGCA+AGG | 0.542858 | 1.4:-61991176 | MS.gene004836:intron |
| CCGAGGGAACTCTTTCAGGT+TGG | 0.543468 | 1.4:+61992403 | None:intergenic |
| GTCATCGTCGACGGGTTCCG+AGG | 0.544293 | 1.4:+61992287 | None:intergenic |
| ATAGAATTCGTGTCAACAGC+GGG | 0.552082 | 1.4:-61991289 | MS.gene004836:CDS |
| ACTCATTGGGAGGAACTACA+AGG | 0.552126 | 1.4:-61991891 | MS.gene004836:CDS |
| TTCTGCCCTTTAATTCACTA+GGG | 0.555314 | 1.4:+61992076 | None:intergenic |
| AGTTGGCATCTCTAAGTTGG+GGG | 0.556296 | 1.4:-61991200 | MS.gene004836:CDS |
| TCGGAAACAGATGGAGGCGG+CGG | 0.560562 | 1.4:+61992339 | None:intergenic |
| AACTAAACCCGAGTTTGAGA+AGG | 0.561731 | 1.4:+61992241 | None:intergenic |
| CGAACAAAACCATGGGAAAG+GGG | 0.563310 | 1.4:-61992467 | None:intergenic |
| CAATGTATGTGGCGCAATCA+CGG | 0.563805 | 1.4:-61989290 | MS.gene004836:CDS |
| CCCGAGTTTGAGAAGGTGAT+CGG | 0.566344 | 1.4:+61992248 | None:intergenic |
| AACGTTGACTGACTGTGACT+GGG | 0.566924 | 1.4:+61991542 | None:intergenic |
| ACAGCGGTTGACGGGTTCCG+AGG | 0.566962 | 1.4:+61992386 | None:intergenic |
| AACGAACAAAACCATGGGAA+AGG | 0.571009 | 1.4:-61992469 | None:intergenic |
| CAATTTCTGTACTCATTGGG+AGG | 0.573563 | 1.4:-61991901 | MS.gene004836:CDS |
| TTAAAGGCACCTTCTTGATG+AGG | 0.577270 | 1.4:+61990354 | None:intergenic |
| TCTAATTGTTACCGGTGGGT+CGG | 0.577804 | 1.4:-61989842 | MS.gene004836:CDS |
| TTTGATTGCTGAGCAATGCA+AGG | 0.578974 | 1.4:-61990235 | MS.gene004836:CDS |
| CAATCACGGTGACAGAGAGA+GGG | 0.582107 | 1.4:-61989276 | MS.gene004836:CDS |
| TTTGTTACACTTAAAGCTGA+CGG | 0.586677 | 1.4:-61990449 | MS.gene004836:CDS |
| CTGCAACAAAACAAGTGGAC+TGG | 0.587776 | 1.4:-61991335 | MS.gene004836:CDS |
| TCATCGTCGACGGGTTCCGA+GGG | 0.588162 | 1.4:+61992288 | None:intergenic |
| CAGCGGTTGACGGGTTCCGA+GGG | 0.589468 | 1.4:+61992387 | None:intergenic |
| AACAACATCCTATCAATACC+TGG | 0.590195 | 1.4:+61991858 | None:intergenic |
| GGCTTCAAGAGGCTGGTCAG+AGG | 0.590950 | 1.4:+61991791 | None:intergenic |
| TGATCATGACCTCATCAAGA+AGG | 0.595423 | 1.4:-61990363 | MS.gene004836:intron |
| CCAACCTGAAAGAGTTCCCT+CGG | 0.596388 | 1.4:-61992403 | MS.gene004836:CDS |
| TCTACAACCCTCCGACCCAC+CGG | 0.597847 | 1.4:+61989831 | None:intergenic |
| CCTGATGATCTCATAACAGA+AGG | 0.598302 | 1.4:-61991358 | MS.gene004836:CDS |
| ATCCTATCAATACCTGGAGG+AGG | 0.600483 | 1.4:+61991864 | None:intergenic |
| AGAGTCTTTAGCAATTCTCA+AGG | 0.601079 | 1.4:+61990197 | None:intergenic |
| TGTTCATACAGTCTATGGAA+TGG | 0.601080 | 1.4:-61991817 | MS.gene004836:CDS |
| ACGGGGCAATCGGAAACAGA+TGG | 0.602886 | 1.4:+61992330 | None:intergenic |
| GAAGGCTGCAACAAAACAAG+TGG | 0.603837 | 1.4:-61991340 | MS.gene004836:CDS |
| GGCACTATGGCCATCAGCCG+AGG | 0.605030 | 1.4:-61990139 | MS.gene004836:CDS |
| CAATCGGAAACAGATGGAGG+CGG | 0.606479 | 1.4:+61992336 | None:intergenic |
| GAATTACCTCGAAAATACTT+GGG | 0.606713 | 1.4:+61989429 | None:intergenic |
| TTGCTCAGCAATCAAACCGA+TGG | 0.607655 | 1.4:+61990242 | None:intergenic |
| CTACAAGGGATACCTCCTCC+AGG | 0.609593 | 1.4:-61991876 | MS.gene004836:CDS |
| TCCAGATTCAAATCAGCACT+AGG | 0.613601 | 1.4:+61990398 | None:intergenic |
| GCTACTACAAACGTGGCAGT+TGG | 0.618953 | 1.4:-61991217 | MS.gene004836:CDS |
| GGTTACAAGAAAGCTATTGG+TGG | 0.620203 | 1.4:-61991241 | MS.gene004836:CDS |
| GTTGGCATCTCTAAGTTGGG+GGG | 0.621474 | 1.4:-61991199 | MS.gene004836:CDS |
| TGATTGTCTTCGGCAACTAG+GGG | 0.621889 | 1.4:-61992199 | MS.gene004836:CDS |
| TATAGTACTTGCCTGGACAC+AGG | 0.625588 | 1.4:+61991466 | None:intergenic |
| ACTACCACAACAATGGAGAT+CGG | 0.626442 | 1.4:+61992113 | None:intergenic |
| GGTGGAAGAGGATATATGAA+GGG | 0.626519 | 1.4:+61992360 | None:intergenic |
| AAACCAACCTGCAATATGAA+GGG | 0.629222 | 1.4:+61992039 | None:intergenic |
| GGGCAATCGGAAACAGATGG+AGG | 0.631709 | 1.4:+61992333 | None:intergenic |
| ATAGCTTTCTTGTAACCAGA+CGG | 0.637866 | 1.4:+61991247 | None:intergenic |
| CAAACTTGAATGGCTTCAAG+AGG | 0.638894 | 1.4:+61991780 | None:intergenic |
| GGTCGAAATCTCTAATGTAG+AGG | 0.639932 | 1.4:-61991632 | MS.gene004836:CDS |
| GAAGAAACCTTTAATCCAAG+AGG | 0.642317 | 1.4:+61991747 | None:intergenic |
| AAGGGCAGAACTACTCTCGA+TGG | 0.643882 | 1.4:-61992063 | MS.gene004836:CDS |
| GTATAGCACTACCACAACAA+TGG | 0.648628 | 1.4:+61992106 | None:intergenic |
| TCAGCCGAGGCTGCTCGAAG+TGG | 0.649399 | 1.4:-61990126 | MS.gene004836:CDS |
| GATATATGAAGGGGCAACAG+CGG | 0.650923 | 1.4:+61992370 | None:intergenic |
| ACGGGGCAATCGGAAGTCTG+AGG | 0.651239 | 1.4:+61992429 | None:intergenic |
| AATCACGGTGACAGAGAGAG+GGG | 0.661525 | 1.4:-61989275 | MS.gene004836:CDS |
| ATAGACTGTATGAACACCAT+CGG | 0.661736 | 1.4:+61991824 | None:intergenic |
| GTGGAAGAGGATATATGAAG+GGG | 0.664644 | 1.4:+61992361 | None:intergenic |
| GATAGAATTCGTGTCAACAG+CGG | 0.667090 | 1.4:-61991290 | MS.gene004836:CDS |
| AGATGAATATGGGCATACGT+TGG | 0.673369 | 1.4:-61990546 | MS.gene004836:CDS |
| CTCATTGGGAGGAACTACAA+GGG | 0.696925 | 1.4:-61991890 | MS.gene004836:CDS |
| AGTACTTGCCTGGACACAGG+AGG | 0.705389 | 1.4:+61991469 | None:intergenic |
| TGGTGGTGCTACTACAAACG+TGG | 0.727262 | 1.4:-61991224 | MS.gene004836:CDS |
| AACATCCTATCAATACCTGG+AGG | 0.738533 | 1.4:+61991861 | None:intergenic |
| GGGTTGTAGATATTACACCC+AGG | 0.754805 | 1.4:-61989818 | MS.gene004836:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTACTAAATTAAAATTATA+CGG | + | chr1.4:61991386-61991405 | None:intergenic | 10.0% |
| !! | TTAATTTAACAATAAGAAAA+GGG | + | chr1.4:61990950-61990969 | None:intergenic | 10.0% |
| !! | CTTAATTTAACAATAAGAAA+AGG | + | chr1.4:61990951-61990970 | None:intergenic | 15.0% |
| !! | TAATAACCATGATTATAAAT+AGG | - | chr1.4:61990266-61990285 | MS.gene004836:CDS | 15.0% |
| !! | TATTTATTAACATGGTTATT+TGG | - | chr1.4:61990539-61990558 | MS.gene004836:CDS | 15.0% |
| !! | AAAATAGAAAATACGAGTAA+AGG | + | chr1.4:61990851-61990870 | None:intergenic | 20.0% |
| !! | AAAATTTACCTTTATGACAT+CGG | + | chr1.4:61991601-61991620 | None:intergenic | 20.0% |
| !! | AATCAACCTATTTATAATCA+TGG | + | chr1.4:61990275-61990294 | None:intergenic | 20.0% |
| !! | AGTAAATACATGATATTTGT+AGG | + | chr1.4:61990991-61991010 | None:intergenic | 20.0% |
| !! | CAAAGAAAATAATGAAATGA+GGG | + | chr1.4:61991942-61991961 | None:intergenic | 20.0% |
| !! | GAAAATAATGTTGATATATC+TGG | - | chr1.4:61991169-61991188 | MS.gene004836:intron | 20.0% |
| !! | TAAAATTCAGAATACTACAA+CGG | + | chr1.4:61991042-61991061 | None:intergenic | 20.0% |
| !! | TCCTAAAAATATTAGAGTAT+TGG | - | chr1.4:61990094-61990113 | MS.gene004836:CDS | 20.0% |
| !! | TCTATGTCTATTTATTAACA+TGG | - | chr1.4:61990531-61990550 | MS.gene004836:CDS | 20.0% |
| !!! | ATTTATTACACTTTTCTGAA+TGG | - | chr1.4:61990638-61990657 | MS.gene004836:intron | 20.0% |
| !!! | CCTAAAAATATTAGAGTATT+GGG | - | chr1.4:61990095-61990114 | MS.gene004836:CDS | 20.0% |
| !!! | TAGGTTGATTTTAATTTTTC+AGG | - | chr1.4:61990285-61990304 | MS.gene004836:intron | 20.0% |
| ! | AAAATTCAGAATACTACAAC+GGG | + | chr1.4:61991041-61991060 | None:intergenic | 25.0% |
| ! | AACAATAAGAAAAGGGAAAA+AGG | + | chr1.4:61990943-61990962 | None:intergenic | 25.0% |
| ! | AACATTGTATATGCATGTAT+TGG | + | chr1.4:61989982-61990001 | None:intergenic | 25.0% |
| ! | AATACAACATCATCATCATA+AGG | + | chr1.4:61991780-61991799 | None:intergenic | 25.0% |
| ! | ACATTGTATATGCATGTATT+GGG | + | chr1.4:61989981-61990000 | None:intergenic | 25.0% |
| ! | ATTATACGGACTTAAACTAT+CGG | + | chr1.4:61991372-61991391 | None:intergenic | 25.0% |
| ! | CTTAATGAACAAATCAAACA+TGG | + | chr1.4:61990590-61990609 | None:intergenic | 25.0% |
| ! | GCAAAGAAAATAATGAAATG+AGG | + | chr1.4:61991943-61991962 | None:intergenic | 25.0% |
| ! | TAAATAAAGAATACAAGCGA+CGG | + | chr1.4:61989681-61989700 | None:intergenic | 25.0% |
| ! | TAAGAAATCTATGATGTGTT+GGG | - | chr1.4:61990606-61990625 | MS.gene004836:intron | 25.0% |
| ! | TATCAATTTCTGTACTCATT+GGG | - | chr1.4:61989774-61989793 | MS.gene004836:intron | 25.0% |
| ! | TATTGTTTCAATTCTGTTTG+CGG | - | chr1.4:61989702-61989721 | MS.gene004836:intron | 25.0% |
| ! | TTAAAGTCGTTTCTATTTGA+CGG | + | chr1.4:61990880-61990899 | None:intergenic | 25.0% |
| ! | TTAAGAAATCTATGATGTGT+TGG | - | chr1.4:61990605-61990624 | MS.gene004836:intron | 25.0% |
| ! | TTATCAATTTCTGTACTCAT+TGG | - | chr1.4:61989773-61989792 | MS.gene004836:intron | 25.0% |
| !! | ATTCTGAATTTTAGACATGA+TGG | - | chr1.4:61991049-61991068 | MS.gene004836:intron | 25.0% |
| !! | CCCAATACTCTAATATTTTT+AGG | + | chr1.4:61990098-61990117 | None:intergenic | 25.0% |
| !! | GATTACTAAATTTTTGTGCA+GGG | - | chr1.4:61992127-61992146 | MS.gene004836:CDS | 25.0% |
| !!! | AAAAATATTAGAGTATTGGG+AGG | - | chr1.4:61990098-61990117 | MS.gene004836:CDS | 25.0% |
| !!! | ATTACTTTTTTGATTGATCG+AGG | - | chr1.4:61991750-61991769 | MS.gene004836:intron | 25.0% |
| !!! | TTTAATTTAGTACTGATTGC+AGG | - | chr1.4:61991392-61991411 | MS.gene004836:intron | 25.0% |
| AAAAGGGAAAAAGGTAGAAT+GGG | + | chr1.4:61990934-61990953 | None:intergenic | 30.0% | |
| AAATAAAGAATACAAGCGAC+GGG | + | chr1.4:61989680-61989699 | None:intergenic | 30.0% | |
| AAATCCGAGTTAAATGACTT+TGG | + | chr1.4:61991894-61991913 | None:intergenic | 30.0% | |
| AATGTAACATTGTCATGTTC+GGG | - | chr1.4:61990810-61990829 | MS.gene004836:intron | 30.0% | |
| ACAATTAGAAGCTTGAGATT+AGG | + | chr1.4:61991825-61991844 | None:intergenic | 30.0% | |
| ATATTCCATTATGGTTCCAT+CGG | - | chr1.4:61991420-61991439 | MS.gene004836:intron | 30.0% | |
| ATGGAATAGAGAAGCTAATA+AGG | - | chr1.4:61990178-61990197 | MS.gene004836:CDS | 30.0% | |
| CAGGCTAAAATATTCCATTA+TGG | - | chr1.4:61991411-61991430 | MS.gene004836:intron | 30.0% | |
| GAAAAAAGAATGACATGCAA+TGG | + | chr1.4:61991670-61991689 | None:intergenic | 30.0% | |
| GAATGTAACATTGTCATGTT+CGG | - | chr1.4:61990809-61990828 | MS.gene004836:intron | 30.0% | |
| GAATTACCTCGAAAATACTT+GGG | + | chr1.4:61992252-61992271 | None:intergenic | 30.0% | |
| GCATGGAACTCTTAAATTTA+TGG | - | chr1.4:61990159-61990178 | MS.gene004836:CDS | 30.0% | |
| GTTATTACTATATGATCACG+TGG | + | chr1.4:61990253-61990272 | None:intergenic | 30.0% | |
| TAAAGTCGTTTCTATTTGAC+GGG | + | chr1.4:61990879-61990898 | None:intergenic | 30.0% | |
| TGAACAGAGATGGAAATTAA+AGG | + | chr1.4:61991343-61991362 | None:intergenic | 30.0% | |
| TGAATTACCTCGAAAATACT+TGG | + | chr1.4:61992253-61992272 | None:intergenic | 30.0% | |
| TTATATTTCGCCAATGTATG+TGG | - | chr1.4:61992377-61992396 | MS.gene004836:CDS | 30.0% | |
| TTCATCTGCATTTATAAGCA+AGG | - | chr1.4:61990502-61990521 | MS.gene004836:CDS | 30.0% | |
| TTCTAATTTCAACAACGCAT+TGG | - | chr1.4:61991204-61991223 | MS.gene004836:CDS | 30.0% | |
| TTGCTCTTTATTCTGATGAA+TGG | - | chr1.4:61991959-61991978 | MS.gene004836:intron | 30.0% | |
| TTTACTTGTAGATTGTACCT+AGG | - | chr1.4:61991005-61991024 | MS.gene004836:intron | 30.0% | |
| TTTGTTACACTTAAAGCTGA+CGG | - | chr1.4:61991229-61991248 | MS.gene004836:CDS | 30.0% | |
| ! | CGATTACTAAATTTTTGTGC+AGG | - | chr1.4:61992126-61992145 | MS.gene004836:CDS | 30.0% |
| ! | CGGATTTTTATTGTCTGAAT+AGG | - | chr1.4:61991907-61991926 | MS.gene004836:CDS | 30.0% |
| !! | ATTTGCTATTCTCTGACTTA+AGG | - | chr1.4:61990005-61990024 | MS.gene004836:intron | 30.0% |
| !! | ATTTTTGTGCAGGGTTTTAA+AGG | - | chr1.4:61992136-61992155 | MS.gene004836:CDS | 30.0% |
| !! | GTTTAGTTTGAAGAGAGAAA+AGG | - | chr1.4:61989452-61989471 | MS.gene004836:CDS | 30.0% |
| !! | TACGTTGGCTGATATTTTAA+AGG | - | chr1.4:61991147-61991166 | MS.gene004836:intron | 30.0% |
| !! | TTTGCTATTCTCTGACTTAA+GGG | - | chr1.4:61990006-61990025 | MS.gene004836:intron | 30.0% |
| !!! | AACTTTTTCAGGTTGGTTAA+CGG | + | chr1.4:61989370-61989389 | None:intergenic | 30.0% |
| AAACCAACCTGCAATATGAA+GGG | + | chr1.4:61989642-61989661 | None:intergenic | 35.0% | |
| AAAGGGAAAAAGGTAGAATG+GGG | + | chr1.4:61990933-61990952 | None:intergenic | 35.0% | |
| AACAACATCCTATCAATACC+TGG | + | chr1.4:61989823-61989842 | None:intergenic | 35.0% | |
| AGAAAAAAGTTGCGAGTGTT+TGG | - | chr1.4:61992303-61992322 | MS.gene004836:CDS | 35.0% | |
| AGAAGCTTGAGATTAGGATT+AGG | + | chr1.4:61991819-61991838 | None:intergenic | 35.0% | |
| AGAGTCTTTAGCAATTCTCA+AGG | + | chr1.4:61991484-61991503 | None:intergenic | 35.0% | |
| AGGTTGGATCAGATGAATAT+GGG | - | chr1.4:61991122-61991141 | MS.gene004836:intron | 35.0% | |
| ATAGACTGTATGAACACCAT+CGG | + | chr1.4:61989857-61989876 | None:intergenic | 35.0% | |
| ATAGCTTTCTTGTAACCAGA+CGG | + | chr1.4:61990434-61990453 | None:intergenic | 35.0% | |
| ATCTGATCCAACCTAAAACA+CGG | + | chr1.4:61991116-61991135 | None:intergenic | 35.0% | |
| ATGCATGTATTGGGATGAAA+AGG | + | chr1.4:61989972-61989991 | None:intergenic | 35.0% | |
| CATAGTGCCAATCTCAATTT+CGG | + | chr1.4:61991528-61991547 | None:intergenic | 35.0% | |
| CCTAACCCTAGTGAATTAAA+GGG | - | chr1.4:61989597-61989616 | MS.gene004836:intron | 35.0% | |
| CTCAAGCTTCTAATTGTTAC+CGG | - | chr1.4:61991828-61991847 | MS.gene004836:CDS | 35.0% | |
| CTTGCCAAAGTCATTTAACT+CGG | - | chr1.4:61991887-61991906 | MS.gene004836:CDS | 35.0% | |
| GAAAAGGGAAAAAGGTAGAA+TGG | + | chr1.4:61990935-61990954 | None:intergenic | 35.0% | |
| GAAGAAACCTTTAATCCAAG+AGG | + | chr1.4:61989934-61989953 | None:intergenic | 35.0% | |
| GAAGCTTGAGATTAGGATTA+GGG | + | chr1.4:61991818-61991837 | None:intergenic | 35.0% | |
| GAAGTGGTATAATGAGCATA+TGG | - | chr1.4:61991568-61991587 | MS.gene004836:CDS | 35.0% | |
| GGTTTCTTGTTACTATCTAC+AGG | - | chr1.4:61990560-61990579 | MS.gene004836:intron | 35.0% | |
| GTATGATCCGAAATTGAGAT+TGG | - | chr1.4:61991518-61991537 | MS.gene004836:CDS | 35.0% | |
| TCCTAACCCTAGTGAATTAA+AGG | - | chr1.4:61989596-61989615 | MS.gene004836:intron | 35.0% | |
| TCTGGTTACAAGAAAGCTAT+TGG | - | chr1.4:61990434-61990453 | MS.gene004836:CDS | 35.0% | |
| TGTTCATACAGTCTATGGAA+TGG | - | chr1.4:61989861-61989880 | MS.gene004836:CDS | 35.0% | |
| TTCTGCCCTTTAATTCACTA+GGG | + | chr1.4:61989605-61989624 | None:intergenic | 35.0% | |
| ! | AAAAGGTTGCTGATTGTCTT+CGG | - | chr1.4:61989469-61989488 | MS.gene004836:CDS | 35.0% |
| ! | AAACAGATTTCCGCCTTTTT+GGG | + | chr1.4:61989528-61989547 | None:intergenic | 35.0% |
| ! | AGACATGATGGAATCTATGT+TGG | - | chr1.4:61991061-61991080 | MS.gene004836:intron | 35.0% |
| ! | GATCGGAAAACAGAAACTTT+TGG | + | chr1.4:61989551-61989570 | None:intergenic | 35.0% |
| ! | TAGGTTGGATCAGATGAATA+TGG | - | chr1.4:61991121-61991140 | MS.gene004836:intron | 35.0% |
| ! | TGGCGAAATATAACGCTTTT+TGG | + | chr1.4:61992370-61992389 | None:intergenic | 35.0% |
| !! | AACTCTTTCAGGTTGGTTAA+CGG | + | chr1.4:61989271-61989290 | None:intergenic | 35.0% |
| !! | AATATTAGAGTATTGGGAGG+AGG | - | chr1.4:61990101-61990120 | MS.gene004836:CDS | 35.0% |
| !! | CAACTAGGGGATTTGTTAAA+TGG | - | chr1.4:61989492-61989511 | MS.gene004836:CDS | 35.0% |
| !! | TGATGAATGGACTGAAATGT+TGG | - | chr1.4:61991972-61991991 | MS.gene004836:intron | 35.0% |
| !!! | ACTTTTTCAGGTTGGTTAAC+GGG | + | chr1.4:61989369-61989388 | None:intergenic | 35.0% |
| !!! | TTGTTTTTGACAATGACCGA+TGG | - | chr1.4:61989838-61989857 | MS.gene004836:CDS | 35.0% |
| AACATCCTATCAATACCTGG+AGG | + | chr1.4:61989820-61989839 | None:intergenic | 40.0% | |
| AACTAAACCCGAGTTTGAGA+AGG | + | chr1.4:61989440-61989459 | None:intergenic | 40.0% | |
| AAGCTTCTAATTGTTACCGG+TGG | - | chr1.4:61991831-61991850 | MS.gene004836:CDS | 40.0% | |
| ACTACCACAACAATGGAGAT+CGG | + | chr1.4:61989568-61989587 | None:intergenic | 40.0% | |
| ACTCCATGAAAAGTGAGCTT+GGG | - | chr1.4:61990710-61990729 | MS.gene004836:intron | 40.0% | |
| AGATGAATATGGGCATACGT+TGG | - | chr1.4:61991132-61991151 | MS.gene004836:intron | 40.0% | |
| AGCTTCTAATTGTTACCGGT+GGG | - | chr1.4:61991832-61991851 | MS.gene004836:CDS | 40.0% | |
| AGGGATCTATTGGTACTTGT+AGG | - | chr1.4:61990025-61990044 | MS.gene004836:intron | 40.0% | |
| ATAGAATTCGTGTCAACAGC+GGG | - | chr1.4:61990389-61990408 | MS.gene004836:CDS | 40.0% | |
| ATCACGTGGACACTTAATCA+TGG | + | chr1.4:61990239-61990258 | None:intergenic | 40.0% | |
| ATTGGGATGAAAAGGATGAG+TGG | + | chr1.4:61989964-61989983 | None:intergenic | 40.0% | |
| CAAACTTGAATGGCTTCAAG+AGG | + | chr1.4:61989901-61989920 | None:intergenic | 40.0% | |
| CAATTTCTGTACTCATTGGG+AGG | - | chr1.4:61989777-61989796 | MS.gene004836:intron | 40.0% | |
| CAGGTTGTAAAACTTGAGCA+AGG | - | chr1.4:61992046-61992065 | MS.gene004836:intron | 40.0% | |
| CCCTTTAATTCACTAGGGTT+AGG | + | chr1.4:61989600-61989619 | None:intergenic | 40.0% | |
| CCTGATGATCTCATAACAGA+AGG | - | chr1.4:61990320-61990339 | MS.gene004836:intron | 40.0% | |
| CCTTCTGTTATGAGATCATC+AGG | + | chr1.4:61990323-61990342 | None:intergenic | 40.0% | |
| CGAAATTGAGATTGGCACTA+TGG | - | chr1.4:61991526-61991545 | MS.gene004836:CDS | 40.0% | |
| CTCTGACTTAAGGGATCTAT+TGG | - | chr1.4:61990015-61990034 | MS.gene004836:intron | 40.0% | |
| GAAACCAACCTGCAATATGA+AGG | + | chr1.4:61989643-61989662 | None:intergenic | 40.0% | |
| GACACTCAATGACGAATATC+AGG | - | chr1.4:61992027-61992046 | MS.gene004836:intron | 40.0% | |
| GATAGAATTCGTGTCAACAG+CGG | - | chr1.4:61990388-61990407 | MS.gene004836:CDS | 40.0% | |
| GATGGTGTTCATACAGTCTA+TGG | - | chr1.4:61989856-61989875 | MS.gene004836:CDS | 40.0% | |
| GGTCGAAATCTCTAATGTAG+AGG | - | chr1.4:61990046-61990065 | MS.gene004836:intron | 40.0% | |
| GGTGGAAGAGGATATATGAA+GGG | + | chr1.4:61989321-61989340 | None:intergenic | 40.0% | |
| GGTTACAAGAAAGCTATTGG+TGG | - | chr1.4:61990437-61990456 | MS.gene004836:CDS | 40.0% | |
| GTATAGCACTACCACAACAA+TGG | + | chr1.4:61989575-61989594 | None:intergenic | 40.0% | |
| GTGGAAGAGGATATATGAAG+GGG | + | chr1.4:61989320-61989339 | None:intergenic | 40.0% | |
| GTTCTGCCCTTTAATTCACT+AGG | + | chr1.4:61989606-61989625 | None:intergenic | 40.0% | |
| TCAAACCGATGGAACCATAA+TGG | + | chr1.4:61991428-61991447 | None:intergenic | 40.0% | |
| TCATGGTTATAGTACTTGCC+TGG | + | chr1.4:61990222-61990241 | None:intergenic | 40.0% | |
| TCCAGATTCAAATCAGCACT+AGG | + | chr1.4:61991283-61991302 | None:intergenic | 40.0% | |
| TGAGCTTGGGAATGTAACAT+TGG | - | chr1.4:61990723-61990742 | MS.gene004836:intron | 40.0% | |
| TGATCATGACCTCATCAAGA+AGG | - | chr1.4:61991315-61991334 | MS.gene004836:CDS | 40.0% | |
| TGGAAATGGGTAGTTATGGT+TGG | + | chr1.4:61990910-61990929 | None:intergenic | 40.0% | |
| TTTGATTGCTGAGCAATGCA+AGG | - | chr1.4:61991443-61991462 | MS.gene004836:intron | 40.0% | |
| ! | AACAGATTTCCGCCTTTTTG+GGG | + | chr1.4:61989527-61989546 | None:intergenic | 40.0% |
| ! | AACTCTACCATCCGTGTTTT+AGG | - | chr1.4:61991102-61991121 | MS.gene004836:intron | 40.0% |
| ! | ATGGGTAGTTATGGTTGGTT+AGG | + | chr1.4:61990905-61990924 | None:intergenic | 40.0% |
| ! | CTGGTGATGCATTTGTTAGT+GGG | - | chr1.4:61992203-61992222 | MS.gene004836:CDS | 40.0% |
| ! | GAAACAGATTTCCGCCTTTT+TGG | + | chr1.4:61989529-61989548 | None:intergenic | 40.0% |
| ! | GTTGGTTTCAATTTCGATCC+CGG | - | chr1.4:61989654-61989673 | MS.gene004836:intron | 40.0% |
| ! | TCGGTCTTTTTGAACAGAGA+TGG | + | chr1.4:61991353-61991372 | None:intergenic | 40.0% |
| ! | TTCTGACCCAAGTATTTTCG+AGG | - | chr1.4:61992243-61992262 | MS.gene004836:CDS | 40.0% |
| ! | TTTTCCGATCTCCATTGTTG+TGG | - | chr1.4:61989561-61989580 | MS.gene004836:intron | 40.0% |
| !! | ACTCTTTCAGGTTGGTTAAC+GGG | + | chr1.4:61989270-61989289 | None:intergenic | 40.0% |
| !! | ATTCCCAAGCTCACTTTTCA+TGG | + | chr1.4:61990716-61990735 | None:intergenic | 40.0% |
| !! | CAACGGGAAGTATTATTCCT+AGG | + | chr1.4:61991025-61991044 | None:intergenic | 40.0% |
| !! | GTTGATGCAGCTATTTTGTG+TGG | - | chr1.4:61992327-61992346 | MS.gene004836:CDS | 40.0% |
| !! | TCCTAGTGCTGATTTGAATC+TGG | - | chr1.4:61991279-61991298 | MS.gene004836:CDS | 40.0% |
| !! | TCTAATGTAGAGGCGTTCAA+TGG | - | chr1.4:61990056-61990075 | MS.gene004836:intron | 40.0% |
| !! | TTAAAGGCACCTTCTTGATG+AGG | + | chr1.4:61991327-61991346 | None:intergenic | 40.0% |
| !!! | AGTGGACTGGTTGTTTGTTT+TGG | - | chr1.4:61990356-61990375 | MS.gene004836:intron | 40.0% |
| !!! | CAGGGTTTTAAAGGCAAAGT+TGG | - | chr1.4:61992145-61992164 | MS.gene004836:CDS | 40.0% |
| !!! | CTTTTTCAGGTTGGTTAACG+GGG | + | chr1.4:61989368-61989387 | None:intergenic | 40.0% |
| !!! | GGTTTTAAAGGCAAAGTTGG+AGG | - | chr1.4:61992148-61992167 | MS.gene004836:CDS | 40.0% |
| AAGGTAGAATGGGGTGGAAA+TGG | + | chr1.4:61990924-61990943 | None:intergenic | 45.0% | |
| AATCGCTATTAGCTGAACGC+TGG | + | chr1.4:61992111-61992130 | None:intergenic | 45.0% | |
| ACCTGCCAATGCATGCATTT+GGG | + | chr1.4:61989745-61989764 | None:intergenic | 45.0% | |
| ACTCATTGGGAGGAACTACA+AGG | - | chr1.4:61989787-61989806 | MS.gene004836:intron | 45.0% | |
| AGGTAGAATGGGGTGGAAAT+GGG | + | chr1.4:61990923-61990942 | None:intergenic | 45.0% | |
| ATCCTATCAATACCTGGAGG+AGG | + | chr1.4:61989817-61989836 | None:intergenic | 45.0% | |
| ATGACTTTGGCAAGCTTACC+TGG | + | chr1.4:61991881-61991900 | None:intergenic | 45.0% | |
| CAATGTATGTGGCGCAATCA+CGG | - | chr1.4:61992388-61992407 | MS.gene004836:CDS | 45.0% | |
| CACACACGCACAAACTTGAA+TGG | + | chr1.4:61989911-61989930 | None:intergenic | 45.0% | |
| CAGTTGGCATCTCTAAGTTG+GGG | - | chr1.4:61990477-61990496 | MS.gene004836:CDS | 45.0% | |
| CCAACCTGAAAAAGTTCCCT+CGG | - | chr1.4:61989374-61989393 | MS.gene004836:intron | 45.0% | |
| CGGTGGAAGAGGATATATGA+AGG | + | chr1.4:61989322-61989341 | None:intergenic | 45.0% | |
| CTCATTGGGAGGAACTACAA+GGG | - | chr1.4:61989788-61989807 | MS.gene004836:intron | 45.0% | |
| CTGATTGTCTTCGGCAACTA+GGG | - | chr1.4:61989478-61989497 | MS.gene004836:CDS | 45.0% | |
| CTGCAACAAAACAAGTGGAC+TGG | - | chr1.4:61990343-61990362 | MS.gene004836:intron | 45.0% | |
| GAAGGCTGCAACAAAACAAG+TGG | - | chr1.4:61990338-61990357 | MS.gene004836:intron | 45.0% | |
| GACGGTGCATCAAAAGAGAT+TGG | + | chr1.4:61990416-61990435 | None:intergenic | 45.0% | |
| GACTCCATGAAAAGTGAGCT+TGG | - | chr1.4:61990709-61990728 | MS.gene004836:intron | 45.0% | |
| GATATATGAAGGGGCAACAG+CGG | + | chr1.4:61989311-61989330 | None:intergenic | 45.0% | |
| GATCCAACCTAAAACACGGA+TGG | + | chr1.4:61991112-61991131 | None:intergenic | 45.0% | |
| GCAGTTGGCATCTCTAAGTT+GGG | - | chr1.4:61990476-61990495 | MS.gene004836:CDS | 45.0% | |
| GCATCTAGCCGATGTCATAA+AGG | - | chr1.4:61991590-61991609 | MS.gene004836:CDS | 45.0% | |
| GGGTTGTAGATATTACACCC+AGG | - | chr1.4:61991860-61991879 | MS.gene004836:CDS | 45.0% | |
| GTGTGTGCCTCTTGGATTAA+AGG | - | chr1.4:61989924-61989943 | MS.gene004836:CDS | 45.0% | |
| GTTAAACCTGTCGACACAAC+TGG | - | chr1.4:61992178-61992197 | MS.gene004836:CDS | 45.0% | |
| TATAGTACTTGCCTGGACAC+AGG | + | chr1.4:61990215-61990234 | None:intergenic | 45.0% | |
| TCACACCCAAATGCATGCAT+TGG | - | chr1.4:61989737-61989756 | MS.gene004836:intron | 45.0% | |
| TCCGATCACCTTCTCAAACT+CGG | - | chr1.4:61989429-61989448 | MS.gene004836:intron | 45.0% | |
| TCTAATTGTTACCGGTGGGT+CGG | - | chr1.4:61991836-61991855 | MS.gene004836:CDS | 45.0% | |
| TGACTTTGGCAAGCTTACCT+GGG | + | chr1.4:61991880-61991899 | None:intergenic | 45.0% | |
| TGATTGTCTTCGGCAACTAG+GGG | - | chr1.4:61989479-61989498 | MS.gene004836:CDS | 45.0% | |
| TTGCTCAGCAATCAAACCGA+TGG | + | chr1.4:61991439-61991458 | None:intergenic | 45.0% | |
| TTTGAGAAGGTGATCGGAGA+CGG | + | chr1.4:61989427-61989446 | None:intergenic | 45.0% | |
| ! | AACGTTGACTGACTGTGACT+GGG | + | chr1.4:61990139-61990158 | None:intergenic | 45.0% |
| ! | ACAGATTTCCGCCTTTTTGG+GGG | + | chr1.4:61989526-61989545 | None:intergenic | 45.0% |
| ! | AGTTGGCATCTCTAAGTTGG+GGG | - | chr1.4:61990478-61990497 | MS.gene004836:CDS | 45.0% |
| ! | ATCTCTTTTGATGCACCGTC+TGG | - | chr1.4:61990416-61990435 | MS.gene004836:CDS | 45.0% |
| ! | CATTTGGGTGTGAAGTGTTC+AGG | + | chr1.4:61989730-61989749 | None:intergenic | 45.0% |
| ! | CTATTTTGTGTGGCAGGATG+AGG | - | chr1.4:61992337-61992356 | MS.gene004836:CDS | 45.0% |
| ! | GCTGGTGATGCATTTGTTAG+TGG | - | chr1.4:61992202-61992221 | MS.gene004836:CDS | 45.0% |
| ! | TGCAGGACAGCATCTTTTGT+AGG | + | chr1.4:61992443-61992462 | None:intergenic | 45.0% |
| ! | TGTCATGTTCGGGCATTTTG+AGG | - | chr1.4:61990820-61990839 | MS.gene004836:intron | 45.0% |
| !! | ATGCAGCTATTTTGTGTGGC+AGG | - | chr1.4:61992331-61992350 | MS.gene004836:CDS | 45.0% |
| !! | CTACCATCCGTGTTTTAGGT+TGG | - | chr1.4:61991106-61991125 | MS.gene004836:intron | 45.0% |
| !! | CTCTTTCAGGTTGGTTAACG+GGG | + | chr1.4:61989269-61989288 | None:intergenic | 45.0% |
| !! | GAGCGCAAGTTCTTGCTTTT+CGG | - | chr1.4:61991253-61991272 | MS.gene004836:CDS | 45.0% |
| !! | TACCTCCTCCAGGTATTGAT+AGG | - | chr1.4:61989812-61989831 | MS.gene004836:intron | 45.0% |
| AAAGAATACAAGCGACGGGC+CGG | + | chr1.4:61989676-61989695 | None:intergenic | 50.0% | |
| AAGGGCAGAACTACTCTCGA+TGG | - | chr1.4:61989615-61989634 | MS.gene004836:intron | 50.0% | |
| AATCACGGTGACAGAGAGAG+GGG | - | chr1.4:61992403-61992422 | MS.gene004836:CDS | 50.0% | |
| CAATCACGGTGACAGAGAGA+GGG | - | chr1.4:61992402-61992421 | MS.gene004836:CDS | 50.0% | |
| CAATCGGAAACAGATGGAGG+CGG | + | chr1.4:61989345-61989364 | None:intergenic | 50.0% | |
| CACAGTCAGTCAACGTTGCA+TGG | - | chr1.4:61990142-61990161 | MS.gene004836:CDS | 50.0% | |
| CCAACCTGAAAGAGTTCCCT+CGG | - | chr1.4:61989275-61989294 | MS.gene004836:CDS | 50.0% | |
| CCCGAGTTTGAGAAGGTGAT+CGG | + | chr1.4:61989433-61989452 | None:intergenic | 50.0% | |
| CCGATCACCTTCTCAAACTC+GGG | - | chr1.4:61989430-61989449 | MS.gene004836:intron | 50.0% | |
| CGATGGTCCCTTCATATTGC+AGG | - | chr1.4:61989632-61989651 | MS.gene004836:intron | 50.0% | |
| CGTGATTGCGCCACATACAT+TGG | + | chr1.4:61992390-61992409 | None:intergenic | 50.0% | |
| CTTAGATGCCCCCAAAAAGG+CGG | - | chr1.4:61989515-61989534 | MS.gene004836:CDS | 50.0% | |
| CTTGAATGGCTTCAAGAGGC+TGG | + | chr1.4:61989897-61989916 | None:intergenic | 50.0% | |
| GACCTGCCAATGCATGCATT+TGG | + | chr1.4:61989746-61989765 | None:intergenic | 50.0% | |
| GCTACTACAAACGTGGCAGT+TGG | - | chr1.4:61990461-61990480 | MS.gene004836:CDS | 50.0% | |
| GCTGATTGTCTTCGGCAACT+AGG | - | chr1.4:61989477-61989496 | MS.gene004836:CDS | 50.0% | |
| GGCAGTTGGCATCTCTAAGT+TGG | - | chr1.4:61990475-61990494 | MS.gene004836:CDS | 50.0% | |
| GGGAAAAAGGTAGAATGGGG+TGG | + | chr1.4:61990930-61990949 | None:intergenic | 50.0% | |
| GGGATGAAAAGGATGAGTGG+TGG | + | chr1.4:61989961-61989980 | None:intergenic | 50.0% | |
| GGGGTGGAAATGGGTAGTTA+TGG | + | chr1.4:61990914-61990933 | None:intergenic | 50.0% | |
| GGTCCCTTCATATTGCAGGT+TGG | - | chr1.4:61989636-61989655 | MS.gene004836:intron | 50.0% | |
| TATACCACTTCGAGCAGCCT+CGG | + | chr1.4:61991559-61991578 | None:intergenic | 50.0% | |
| TGGCTTAGATGCCCCCAAAA+AGG | - | chr1.4:61989512-61989531 | MS.gene004836:CDS | 50.0% | |
| ! | ACCCAAATGCATGCATTGGC+AGG | - | chr1.4:61989741-61989760 | MS.gene004836:intron | 50.0% |
| ! | AGGTTGGTTAACGGGGCAAT+CGG | + | chr1.4:61989262-61989281 | None:intergenic | 50.0% |
| ! | CAACGTTGACTGACTGTGAC+TGG | + | chr1.4:61990140-61990159 | None:intergenic | 50.0% |
| ! | GTTGGCATCTCTAAGTTGGG+GGG | - | chr1.4:61990479-61990498 | MS.gene004836:CDS | 50.0% |
| !! | GGTTCCGAGGGAACTTTTTC+AGG | + | chr1.4:61989381-61989400 | None:intergenic | 50.0% |
| !! | TGGTGGTGCTACTACAAACG+TGG | - | chr1.4:61990454-61990473 | MS.gene004836:CDS | 50.0% |
| !!! | CCGAGGGAACTTTTTCAGGT+TGG | + | chr1.4:61989377-61989396 | None:intergenic | 50.0% |
| AAGAATACAAGCGACGGGCC+GGG | + | chr1.4:61989675-61989694 | None:intergenic | 55.0% | |
| AATTGTTACCGGTGGGTCGG+AGG | - | chr1.4:61991839-61991858 | MS.gene004836:CDS | 55.0% | |
| ACCCGTCGACGATGACTTGA+CGG | - | chr1.4:61989398-61989417 | MS.gene004836:intron | 55.0% | |
| ACGGGGCAATCGGAAACAGA+TGG | + | chr1.4:61989351-61989370 | None:intergenic | 55.0% | |
| AGTACTTGCCTGGACACAGG+AGG | + | chr1.4:61990212-61990231 | None:intergenic | 55.0% | |
| ATGCAGTACCTCCTGTGTCC+AGG | - | chr1.4:61990201-61990220 | MS.gene004836:CDS | 55.0% | |
| ATTGTTACCGGTGGGTCGGA+GGG | - | chr1.4:61991840-61991859 | MS.gene004836:CDS | 55.0% | |
| CTACAAGGGATACCTCCTCC+AGG | - | chr1.4:61989802-61989821 | MS.gene004836:intron | 55.0% | |
| GCAATCACGGTGACAGAGAG+AGG | - | chr1.4:61992401-61992420 | MS.gene004836:CDS | 55.0% | |
| GGGCAATCGGAAACAGATGG+AGG | + | chr1.4:61989348-61989367 | None:intergenic | 55.0% | |
| GGTTCCGAGGGAACTCTTTC+AGG | + | chr1.4:61989282-61989301 | None:intergenic | 55.0% | |
| GTCCGTCAAGTCATCGTCGA+CGG | + | chr1.4:61989403-61989422 | None:intergenic | 55.0% | |
| GTTTGTGCGTGTGTGCCTCT+TGG | - | chr1.4:61989916-61989935 | MS.gene004836:CDS | 55.0% | |
| TCCGTCAAGTCATCGTCGAC+GGG | + | chr1.4:61989402-61989421 | None:intergenic | 55.0% | |
| ! | CCGAGGGAACTCTTTCAGGT+TGG | + | chr1.4:61989278-61989297 | None:intergenic | 55.0% |
| AAGGGGCAACAGCGGTTGAC+GGG | + | chr1.4:61989303-61989322 | None:intergenic | 60.0% | |
| ACGGGGCAATCGGAAGTCTG+AGG | + | chr1.4:61989252-61989271 | None:intergenic | 60.0% | |
| CCTGTCGACACAACTGGTGC+TGG | - | chr1.4:61992184-61992203 | MS.gene004836:CDS | 60.0% | |
| GAAGGGGCAACAGCGGTTGA+CGG | + | chr1.4:61989304-61989323 | None:intergenic | 60.0% | |
| TCGGAAACAGATGGAGGCGG+CGG | + | chr1.4:61989342-61989361 | None:intergenic | 60.0% | |
| TCTACAACCCTCCGACCCAC+CGG | + | chr1.4:61991850-61991869 | None:intergenic | 60.0% | |
| ! | CCAGCACCAGTTGTGTCGAC+AGG | + | chr1.4:61992187-61992206 | None:intergenic | 60.0% |
| ! | GGCTTCAAGAGGCTGGTCAG+AGG | + | chr1.4:61989890-61989909 | None:intergenic | 60.0% |
| ! | TCATCGTCGACGGGTTCCGA+GGG | + | chr1.4:61989393-61989412 | None:intergenic | 60.0% |
| CTTCGAGCAGCCTCGGCTGA+TGG | + | chr1.4:61991552-61991571 | None:intergenic | 65.0% | |
| GAAACAGATGGAGGCGGCGG+TGG | + | chr1.4:61989339-61989358 | None:intergenic | 65.0% | |
| GGCACTATGGCCATCAGCCG+AGG | - | chr1.4:61991539-61991558 | MS.gene004836:CDS | 65.0% | |
| TCAGCCGAGGCTGCTCGAAG+TGG | - | chr1.4:61991552-61991571 | MS.gene004836:CDS | 65.0% | |
| ! | GTCATCGTCGACGGGTTCCG+AGG | + | chr1.4:61989394-61989413 | None:intergenic | 65.0% |
| !! | ACAGCGGTTGACGGGTTCCG+AGG | + | chr1.4:61989295-61989314 | None:intergenic | 65.0% |
| !! | CAGCGGTTGACGGGTTCCGA+GGG | + | chr1.4:61989294-61989313 | None:intergenic | 65.0% |
| GATGGAGGCGGCGGTGGAAG+AGG | + | chr1.4:61989333-61989352 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 61989222 | 61992478 | 61989222 | ID=MS.gene004836 |
| chr1.4 | mRNA | 61989222 | 61992478 | 61989222 | ID=MS.gene004836.t1;Parent=MS.gene004836 |
| chr1.4 | exon | 61992047 | 61992478 | 61992047 | ID=MS.gene004836.t1.exon1;Parent=MS.gene004836.t1 |
| chr1.4 | CDS | 61992047 | 61992478 | 61992047 | ID=cds.MS.gene004836.t1;Parent=MS.gene004836.t1 |
| chr1.4 | exon | 61991755 | 61991937 | 61991755 | ID=MS.gene004836.t1.exon2;Parent=MS.gene004836.t1 |
| chr1.4 | CDS | 61991755 | 61991937 | 61991755 | ID=cds.MS.gene004836.t1;Parent=MS.gene004836.t1 |
| chr1.4 | exon | 61991478 | 61991653 | 61991478 | ID=MS.gene004836.t1.exon3;Parent=MS.gene004836.t1 |
| chr1.4 | CDS | 61991478 | 61991653 | 61991478 | ID=cds.MS.gene004836.t1;Parent=MS.gene004836.t1 |
| chr1.4 | exon | 61991177 | 61991393 | 61991177 | ID=MS.gene004836.t1.exon4;Parent=MS.gene004836.t1 |
| chr1.4 | CDS | 61991177 | 61991393 | 61991177 | ID=cds.MS.gene004836.t1;Parent=MS.gene004836.t1 |
| chr1.4 | exon | 61990364 | 61990576 | 61990364 | ID=MS.gene004836.t1.exon5;Parent=MS.gene004836.t1 |
| chr1.4 | CDS | 61990364 | 61990576 | 61990364 | ID=cds.MS.gene004836.t1;Parent=MS.gene004836.t1 |
| chr1.4 | exon | 61990089 | 61990286 | 61990089 | ID=MS.gene004836.t1.exon6;Parent=MS.gene004836.t1 |
| chr1.4 | CDS | 61990089 | 61990286 | 61990089 | ID=cds.MS.gene004836.t1;Parent=MS.gene004836.t1 |
| chr1.4 | exon | 61989819 | 61989965 | 61989819 | ID=MS.gene004836.t1.exon7;Parent=MS.gene004836.t1 |
| chr1.4 | CDS | 61989819 | 61989965 | 61989819 | ID=cds.MS.gene004836.t1;Parent=MS.gene004836.t1 |
| chr1.4 | exon | 61989436 | 61989552 | 61989436 | ID=MS.gene004836.t1.exon8;Parent=MS.gene004836.t1 |
| chr1.4 | CDS | 61989436 | 61989552 | 61989436 | ID=cds.MS.gene004836.t1;Parent=MS.gene004836.t1 |
| chr1.4 | exon | 61989222 | 61989347 | 61989222 | ID=MS.gene004836.t1.exon9;Parent=MS.gene004836.t1 |
| chr1.4 | CDS | 61989222 | 61989347 | 61989222 | ID=cds.MS.gene004836.t1;Parent=MS.gene004836.t1 |
| Gene Sequence |
| Protein sequence |
