AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98726

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98726.t1 MTR_2g098950 99.088 329 3 0 1 329 1 329 0.0 662
MS.gene98726.t1 MTR_4g067310 89.752 322 33 0 7 328 8 329 0.0 594
MS.gene98726.t1 MTR_1g076850 67.722 316 102 0 14 329 8 323 5.60e-161 452
MS.gene98726.t1 MTR_5g079460 68.111 323 101 2 5 325 57 379 4.45e-154 437
MS.gene98726.t1 MTR_1g101950 63.385 325 113 2 8 326 13 337 1.47e-148 421
MS.gene98726.t1 MTR_6g089480 62.783 309 113 1 21 327 1 309 7.94e-145 411
MS.gene98726.t1 MTR_6g089480 63.004 273 99 1 21 291 1 273 7.42e-127 364
MS.gene98726.t1 MTR_6g089480 63.704 270 96 1 21 288 1 270 1.08e-126 363
MS.gene98726.t1 MTR_7g075860 56.604 318 134 3 14 327 41 358 3.72e-125 363
MS.gene98726.t1 MTR_1g069745 50.680 294 131 4 35 326 4 285 8.18e-99 293
MS.gene98726.t1 MTR_1g057810 48.308 325 157 5 4 325 244 560 4.27e-98 301
MS.gene98726.t1 MTR_1g069490 48.580 317 135 4 12 326 108 398 7.08e-96 290
MS.gene98726.t1 MTR_1g105150 45.231 325 153 6 4 325 244 546 8.66e-86 268
MS.gene98726.t1 MTR_1g054730 44.485 272 122 2 54 325 144 386 3.91e-69 221
MS.gene98726.t1 MTR_4g019165 32.698 367 200 4 7 326 86 452 1.76e-53 182
MS.gene98726.t1 MTR_5g044990 32.362 309 184 5 40 326 250 555 4.07e-49 173
MS.gene98726.t1 MTR_0046s0180 52.000 100 48 0 225 324 8 107 4.76e-31 113
MS.gene98726.t1 MTR_2g072830 27.397 292 180 9 45 327 89 357 1.40e-16 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98726.t1 AT3G59480 82.927 328 52 1 1 328 1 324 0.0 559
MS.gene98726.t1 AT2G31390 83.228 316 53 0 13 328 8 323 0.0 545
MS.gene98726.t1 AT1G06030 79.878 328 63 1 1 328 1 325 0.0 544
MS.gene98726.t1 AT1G06020 79.573 328 63 1 1 328 1 324 0.0 541
MS.gene98726.t1 AT4G10260 68.239 318 101 0 12 329 4 321 4.95e-159 447
MS.gene98726.t1 AT1G66430 64.907 322 111 2 3 323 55 375 1.14e-153 436
MS.gene98726.t1 AT5G51830 65.094 318 109 1 14 329 23 340 7.71e-149 422
MS.gene98726.t1 AT5G51830 65.094 318 109 1 14 329 23 340 7.71e-149 422
MS.gene98726.t1 AT1G50390 60.588 170 38 1 159 328 1 141 1.20e-65 204
MS.gene98726.t1 AT3G54090 32.970 367 198 6 7 326 96 461 1.63e-53 182
MS.gene98726.t1 AT1G69200 30.903 288 177 3 40 306 246 532 1.11e-41 153
MS.gene98726.t1 AT1G17160 27.759 299 174 10 45 328 105 376 5.73e-16 78.6
MS.gene98726.t1 AT1G06730 25.839 298 198 8 46 329 132 420 2.29e-14 73.9

Find 101 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGGAGCAACTTCAAATT+TGG 0.187281 2.1:+5491994 None:intergenic
GCAAGCAAATACTGAGTATT+TGG 0.192010 2.1:-5492113 MS.gene98726:CDS
GAGAAGGCAGCCAGCTTCTT+TGG 0.228047 2.1:+5492188 None:intergenic
AGCAATCACAACTACTAAAA+AGG 0.271618 2.1:-5491474 MS.gene98726:CDS
TTCCTTTGTTGGTGCTCTAT+TGG 0.279273 2.1:-5491748 MS.gene98726:CDS
CATGCTCGCCGGGATCTTAA+AGG 0.306436 2.1:-5493603 MS.gene98726:CDS
CTAAGCACTTACTTCTAATA+TGG 0.330358 2.1:+5491704 None:intergenic
AGTTCGAGGTTGAGTTCTTC+AGG 0.330827 2.1:+5493446 None:intergenic
TGGCTCCACAATCAAGCTTA+TGG 0.338825 2.1:+5492245 None:intergenic
GCCATCGCTGTTTCCCGATT+AGG 0.339195 2.1:-5493674 MS.gene98726:CDS
GACTTTGTCCCAACAGTCTC+CGG 0.359175 2.1:-5493758 MS.gene98726:CDS
CAAGCAAATACTGAGTATTT+GGG 0.361004 2.1:-5492112 MS.gene98726:CDS
AGGCGGCTTTGCCTCCTAAT+CGG 0.377551 2.1:+5493660 None:intergenic
GGTGCCGGTGATTCCTTTGT+TGG 0.398386 2.1:-5491759 MS.gene98726:CDS
GGCCAAGATTGTTGATGATC+AGG 0.401747 2.1:-5491727 MS.gene98726:CDS
AACGTTCGCTGGTGCACCGC+CGG 0.402108 2.1:+5493697 None:intergenic
GCCGGGAGCTTTGAGGAAAC+CGG 0.402931 2.1:+5493715 None:intergenic
CCAAGGTGCACGTACTGCTT+TGG 0.410980 2.1:-5493546 MS.gene98726:CDS
GTCAATACAGTTGATACAAC+TGG 0.425906 2.1:-5491780 MS.gene98726:CDS
AAGTTGCTCCTTGTCACTCT+TGG 0.431035 2.1:-5491985 MS.gene98726:CDS
GGAGGCAAAGCCGCCTTTGT+CGG 0.435911 2.1:-5493653 MS.gene98726:CDS
CTTGTCACTCTTGGTGAACA+TGG 0.436126 2.1:-5491976 MS.gene98726:CDS
CAAGGAGCAACTTCAAATTT+GGG 0.437763 2.1:+5491995 None:intergenic
GGCGGCTTTGCCTCCTAATC+GGG 0.438513 2.1:+5493661 None:intergenic
CACAAGGGTAGGCGGAGGTT+AGG 0.440870 2.1:+5492156 None:intergenic
CAGGAATCTATGCTTTGATC+AGG 0.443006 2.1:+5491411 None:intergenic
GTGCACCGCCGGGAGCTTTG+AGG 0.445875 2.1:+5493708 None:intergenic
ATGTAGATCAGCACACTTGA+AGG 0.450810 2.1:-5492223 MS.gene98726:CDS
GAGGCAAAGCCGCCTTTGTC+GGG 0.454605 2.1:-5493652 MS.gene98726:CDS
GGGAGACCCCGGAGACTGTT+GGG 0.455113 2.1:+5493750 None:intergenic
ACTTTGTCCCAACAGTCTCC+GGG 0.456193 2.1:-5493757 MS.gene98726:CDS
TTCAGTACATCCTCCTCCTT+GGG 0.459048 2.1:+5491434 None:intergenic
GTTCAGTACATCCTCCTCCT+TGG 0.459298 2.1:+5491433 None:intergenic
AATACTGAGTATTTGGGAAA+AGG 0.459878 2.1:-5492106 MS.gene98726:CDS
GGCTTCTGCGAGGGAGACCC+CGG 0.465913 2.1:+5493739 None:intergenic
GGCCTGATCATCAACAATCT+TGG 0.466456 2.1:+5491725 None:intergenic
ACAGCGATGGCAACGTTCGC+TGG 0.466980 2.1:+5493686 None:intergenic
ACGTTCGCTGGTGCACCGCC+GGG 0.467168 2.1:+5493698 None:intergenic
ACTGGTCTCATCGTCAGCTT+CGG 0.467497 2.1:-5493794 MS.gene98726:CDS
TCCTCCTCCTTGGGAAGAGC+AGG 0.469695 2.1:+5491443 None:intergenic
AATGAGCTGGAGTTCCTCAC+TGG 0.483755 2.1:-5492060 MS.gene98726:CDS
GCCGCCTTTGTCGGGAAACT+AGG 0.491217 2.1:-5493644 MS.gene98726:CDS
TTAAGAAGCATGTCAGCACT+TGG 0.493995 2.1:+5493470 None:intergenic
CTTGCGAGCTTCATCAGCCG+AGG 0.503105 2.1:+5492131 None:intergenic
GGAAAAGGCTGATCTGATCA+AGG 0.504055 2.1:-5492091 MS.gene98726:CDS
CCGGGAGCTTTGAGGAAACC+GGG 0.506801 2.1:+5493716 None:intergenic
CCCGGTTTCCTCAAAGCTCC+CGG 0.508496 2.1:-5493716 MS.gene98726:CDS
ATGGAAGTTGCCAAAGAAGC+TGG 0.510846 2.1:-5492198 MS.gene98726:CDS
GTCTCCCTCGCAGAAGCCCC+CGG 0.512463 2.1:-5493734 MS.gene98726:CDS
TGAGACCAGTGCCTGTGGTT+GGG 0.512647 2.1:+5493807 None:intergenic
CCGCCTACCCTTGTGGCCCT+CGG 0.512817 2.1:-5492148 MS.gene98726:CDS
AAACTAGGCGATGACGAGTT+CGG 0.513562 2.1:-5493629 MS.gene98726:CDS
CATAAACTCACGCTCTCCAT+CGG 0.515761 2.1:+5493505 None:intergenic
ATGCTACTGCTTTGACATTG+TGG 0.517687 2.1:-5492020 MS.gene98726:CDS
GGCATCCCAACCACAGGCAC+TGG 0.519828 2.1:-5493812 MS.gene98726:CDS
AGTTCGGTCACATGCTCGCC+GGG 0.520035 2.1:-5493613 MS.gene98726:CDS
GAGTTCGGTCACATGCTCGC+CGG 0.524794 2.1:-5493614 MS.gene98726:CDS
GTACAGATCTGATGAGTTCG+AGG 0.528295 2.1:+5493432 None:intergenic
CAGCCGAGGGCCACAAGGGT+AGG 0.529220 2.1:+5492145 None:intergenic
AGGGAGACCCCGGAGACTGT+TGG 0.531689 2.1:+5493749 None:intergenic
GCCGGGATCTTAAAGGAAAA+CGG 0.533796 2.1:-5493596 MS.gene98726:CDS
ACTTCAATGGCTTCAAGCAA+TGG 0.538580 2.1:-5493833 None:intergenic
ATCGCTGTTTCCCGATTAGG+AGG 0.543446 2.1:-5493671 MS.gene98726:CDS
TCCTGCTCTTCCCAAGGAGG+AGG 0.543892 2.1:-5491444 MS.gene98726:CDS
TTCATCAGCCGAGGGCCACA+AGG 0.545538 2.1:+5492140 None:intergenic
CAAGGTTAGTGATAATGAGC+TGG 0.551346 2.1:-5492073 MS.gene98726:CDS
TGAATGCATCTACTTGTCCA+TGG 0.557038 2.1:+5491805 None:intergenic
CCGAGGGCCACAAGGGTAGG+CGG 0.558718 2.1:+5492148 None:intergenic
TTCAAGTGTGCTGATCTACA+TGG 0.561390 2.1:+5492225 None:intergenic
AGGGCCACAAGGGTAGGCGG+AGG 0.561736 2.1:+5492151 None:intergenic
TCAAGCTTATGGATCCATAG+TGG 0.562307 2.1:+5492256 None:intergenic
ATCAGCACACTTGAAGGCAA+TGG 0.564340 2.1:-5492217 MS.gene98726:CDS
TTGCGAGCTTCATCAGCCGA+GGG 0.565323 2.1:+5492132 None:intergenic
AGCAATTCCTGCTCTTCCCA+AGG 0.570369 2.1:-5491450 MS.gene98726:CDS
AGCACCAACAAAGGAATCAC+CGG 0.570827 2.1:+5491755 None:intergenic
TGGATCCATAAGCTTGATTG+TGG 0.577549 2.1:-5492250 MS.gene98726:CDS
ACAGTTGATACAACTGGTGC+CGG 0.581263 2.1:-5491774 MS.gene98726:CDS
GAAAACGGTGTGGTCGCAGA+AGG 0.582324 2.1:-5493581 MS.gene98726:CDS
TCCTAATCGGGAAACAGCGA+TGG 0.583230 2.1:+5493673 None:intergenic
ATCGCCTAGTTTCCCGACAA+AGG 0.583484 2.1:+5493640 None:intergenic
CTAACCTCCGCCTACCCTTG+TGG 0.590573 2.1:-5492155 MS.gene98726:CDS
AGTACGTGCACCTTGGTCAA+AGG 0.592226 2.1:+5493553 None:intergenic
CCAAAGCAGTACGTGCACCT+TGG 0.592587 2.1:+5493546 None:intergenic
ATGAGACCAGTGCCTGTGGT+TGG 0.592790 2.1:+5493806 None:intergenic
CTCAAGTTTGCAAATGCATG+TGG 0.598828 2.1:-5491497 MS.gene98726:CDS
GGTTAGGATCATAAGAGAGA+AGG 0.600234 2.1:+5492172 None:intergenic
AGCAATGGCATCCCAACCAC+AGG 0.606388 2.1:-5493818 MS.gene98726:CDS
TTTGTTACTCTACGCGCCGA+TGG 0.610292 2.1:-5493521 MS.gene98726:CDS
GGCCAATAGAGCACCAACAA+AGG 0.615796 2.1:+5491746 None:intergenic
CATGTTCACCAAGAGTGACA+AGG 0.619134 2.1:+5491977 None:intergenic
GCCTAGTTTCCCGACAAAGG+CGG 0.631977 2.1:+5493643 None:intergenic
GAAGGTATAACCTTTGACCA+AGG 0.632928 2.1:-5493563 MS.gene98726:CDS
CGGGAGCTTTGAGGAAACCG+GGG 0.634849 2.1:+5493717 None:intergenic
CTTTGTCCCAACAGTCTCCG+GGG 0.637109 2.1:-5493756 MS.gene98726:CDS
GACGATGAGACCAGTGCCTG+TGG 0.653048 2.1:+5493802 None:intergenic
GGGAGCTTTGAGGAAACCGG+GGG 0.663234 2.1:+5493718 None:intergenic
TCATCAGCCGAGGGCCACAA+GGG 0.664278 2.1:+5492141 None:intergenic
AATTCCTGCTCTTCCCAAGG+AGG 0.668223 2.1:-5491447 MS.gene98726:CDS
GATCTTAAAGGAAAACGGTG+TGG 0.740295 2.1:-5493591 MS.gene98726:CDS
GGTTTCCTCAAAGCTCCCGG+CGG 0.763935 2.1:-5493713 MS.gene98726:CDS
TGGCGCAAGATACTACACCA+AGG 0.783785 2.1:-5491956 MS.gene98726:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATATATAAATTCGCA+TGG - chr2.1:5492739-5492758 MS.gene98726:intron 15.0%
!! TCTAGAAAAATAAAAAGAAT+TGG + chr2.1:5492678-5492697 None:intergenic 15.0%
!!! AAACTTAATTTTAATTTGAC+AGG - chr2.1:5492956-5492975 MS.gene98726:intron 15.0%
!!! AAATTTTGTAGATATGTAAA+AGG + chr2.1:5492369-5492388 None:intergenic 15.0%
!!! AATTTTGTAGATATGTAAAA+GGG + chr2.1:5492368-5492387 None:intergenic 15.0%
!!! TTTTATATGTTTAGTCTAAT+GGG - chr2.1:5492213-5492232 MS.gene98726:CDS 15.0%
!!! TTTTTATATGTTTAGTCTAA+TGG - chr2.1:5492212-5492231 MS.gene98726:CDS 15.0%
!! AAAACCATATCATATAGTAT+CGG + chr2.1:5492059-5492078 None:intergenic 20.0%
!! AAACATTAAAGAAAATCAAC+TGG + chr2.1:5492553-5492572 None:intergenic 20.0%
!! AATTTAAATAATGCAACTTG+TGG - chr2.1:5492697-5492716 MS.gene98726:intron 20.0%
!! AGAATAAAGAAATTACTACA+TGG + chr2.1:5492440-5492459 None:intergenic 20.0%
!! ATCAATTACAAAAACTCAAA+CGG + chr2.1:5493679-5493698 None:intergenic 20.0%
!! ATCTAACATATTCAAAATTG+AGG - chr2.1:5492187-5492206 MS.gene98726:CDS 20.0%
!! CAATTCGTCTATAAAATTAT+AGG + chr2.1:5492404-5492423 None:intergenic 20.0%
!! GGAAAAAAAAAAAAAGGATT+AGG - chr2.1:5492504-5492523 MS.gene98726:intron 20.0%
!! TACAAATTTATTAGGAAGAT+TGG - chr2.1:5492253-5492272 MS.gene98726:CDS 20.0%
!! TACGTAGGAAAAAAAAAAAA+AGG - chr2.1:5492498-5492517 MS.gene98726:intron 20.0%
!! TCTACAAAATTTAGAAATGT+TGG - chr2.1:5492377-5492396 MS.gene98726:intron 20.0%
!! TTACTATGTAGAGTAAATTA+CGG - chr2.1:5492122-5492141 MS.gene98726:CDS 20.0%
!! TTCTAAACAAAGATATTCTT+TGG + chr2.1:5493376-5493395 None:intergenic 20.0%
!! TTGAATTTGATTATTACACA+TGG + chr2.1:5492821-5492840 None:intergenic 20.0%
!!! ATATGGTTTTGATTTTGTTT+TGG - chr2.1:5492069-5492088 MS.gene98726:CDS 20.0%
!!! TGATTTATTTTCATAATTGC+AGG - chr2.1:5493702-5493721 MS.gene98726:CDS 20.0%
!!! TTTTTTTTTTTCCTACGTAA+TGG + chr2.1:5492497-5492516 None:intergenic 20.0%
! ACCATTTGAGTAATTATGAA+TGG - chr2.1:5492917-5492936 MS.gene98726:intron 25.0%
! ATATGTAAAAGGGTCTAATT+CGG + chr2.1:5492358-5492377 None:intergenic 25.0%
! ATATTAGAAGTAAGTGCTTA+GGG - chr2.1:5493543-5493562 MS.gene98726:CDS 25.0%
! ATTAGTCCTAGATCTAATAA+TGG + chr2.1:5492014-5492033 None:intergenic 25.0%
! CATTTGAGTAATTATGAATG+GGG - chr2.1:5492919-5492938 MS.gene98726:intron 25.0%
! CCATTTGAGTAATTATGAAT+GGG - chr2.1:5492918-5492937 MS.gene98726:intron 25.0%
! CTTCCTAATAAATTTGTACA+CGG + chr2.1:5492251-5492270 None:intergenic 25.0%
! TCAATTACAAAAACTCAAAC+GGG + chr2.1:5493678-5493697 None:intergenic 25.0%
!! CATTGACTAAGTACATTATT+TGG - chr2.1:5492782-5492801 MS.gene98726:intron 25.0%
AACCAACAGTACAAAAAGTA+GGG + chr2.1:5493327-5493346 None:intergenic 30.0%
AATACTGAGTATTTGGGAAA+AGG - chr2.1:5493139-5493158 MS.gene98726:intron 30.0%
ACGTAATGGTAACTATCAAA+TGG + chr2.1:5492483-5492502 None:intergenic 30.0%
ACTTAGTCAATGATGTAACA+CGG + chr2.1:5492774-5492793 None:intergenic 30.0%
AGCAATCACAACTACTAAAA+AGG - chr2.1:5493771-5493790 MS.gene98726:CDS 30.0%
AGTAGCTAATGTGTATTAAG+GGG + chr2.1:5493573-5493592 None:intergenic 30.0%
ATACACATTAGCTACTCAAA+TGG - chr2.1:5493577-5493596 MS.gene98726:CDS 30.0%
CAAGCAAATACTGAGTATTT+GGG - chr2.1:5493133-5493152 MS.gene98726:intron 30.0%
CAATTACAAAAACTCAAACG+GGG + chr2.1:5493677-5493696 None:intergenic 30.0%
CATATTAGAAGTAAGTGCTT+AGG - chr2.1:5493542-5493561 MS.gene98726:CDS 30.0%
CATTGTTAAAATTACTGCCT+TGG - chr2.1:5492878-5492897 MS.gene98726:intron 30.0%
CCCATTCATAATTACTCAAA+TGG + chr2.1:5492921-5492940 None:intergenic 30.0%
CTAAGCACTTACTTCTAATA+TGG + chr2.1:5493544-5493563 None:intergenic 30.0%
GAGTAGCTAATGTGTATTAA+GGG + chr2.1:5493574-5493593 None:intergenic 30.0%
GCAATCACAACTACTAAAAA+GGG - chr2.1:5493772-5493791 MS.gene98726:CDS 30.0%
GTACCGTGTACAAATTTATT+AGG - chr2.1:5492245-5492264 MS.gene98726:CDS 30.0%
TAAATCACACAATTCAACCA+AGG + chr2.1:5492898-5492917 None:intergenic 30.0%
TGAGTAGCTAATGTGTATTA+AGG + chr2.1:5493575-5493594 None:intergenic 30.0%
! TTTGATAGTTACCATTACGT+AGG - chr2.1:5492483-5492502 MS.gene98726:intron 30.0%
! TTTTGATCCAATTGTAAGAC+CGG - chr2.1:5492282-5492301 MS.gene98726:intron 30.0%
!!! GGTTTTGATTTTGTTTTGGT+GGG - chr2.1:5492073-5492092 MS.gene98726:CDS 30.0%
!!! TGGTTTTGATTTTGTTTTGG+TGG - chr2.1:5492072-5492091 MS.gene98726:CDS 30.0%
ACAAGGAGCAACTTCAAATT+TGG + chr2.1:5493254-5493273 None:intergenic 35.0%
AGCAATTATATTTCATGGCG+TGG - chr2.1:5492649-5492668 MS.gene98726:intron 35.0%
CAACCAACAGTACAAAAAGT+AGG + chr2.1:5493328-5493347 None:intergenic 35.0%
CAAGGAGCAACTTCAAATTT+GGG + chr2.1:5493253-5493272 None:intergenic 35.0%
GACTTCAAATTTGTGTGTTG+AGG - chr2.1:5491942-5491961 MS.gene98726:intron 35.0%
GCAAGCAAATACTGAGTATT+TGG - chr2.1:5493132-5493151 MS.gene98726:intron 35.0%
GCTACCGATACTATATGATA+TGG - chr2.1:5492052-5492071 MS.gene98726:CDS 35.0%
GCTATTATTGTTGGATTCTG+AGG + chr2.1:5492576-5492595 None:intergenic 35.0%
GCTGGAGCAATTATATTTCA+TGG - chr2.1:5492644-5492663 MS.gene98726:intron 35.0%
TCGTCGTATGCTATTATTGT+TGG + chr2.1:5492585-5492604 None:intergenic 35.0%
TGAGTAATTATGAATGGGGT+AGG - chr2.1:5492923-5492942 MS.gene98726:intron 35.0%
! GTCAATACAGTTGATACAAC+TGG - chr2.1:5493465-5493484 MS.gene98726:CDS 35.0%
! TAGGGACATAGATTTTACCT+TGG + chr2.1:5493309-5493328 None:intergenic 35.0%
!!! TTGATTTTGTTTTGGTGGGT+GGG - chr2.1:5492077-5492096 MS.gene98726:CDS 35.0%
!!! TTTGATTTTGTTTTGGTGGG+TGG - chr2.1:5492076-5492095 MS.gene98726:CDS 35.0%
ATGCTACTGCTTTGACATTG+TGG - chr2.1:5493225-5493244 MS.gene98726:intron 40.0%
ATGTAGATCAGCACACTTGA+AGG - chr2.1:5493022-5493041 MS.gene98726:intron 40.0%
CATGGAAATTCTGGCAAAAG+GGG + chr2.1:5493425-5493444 None:intergenic 40.0%
CCATGGAAATTCTGGCAAAA+GGG + chr2.1:5493426-5493445 None:intergenic 40.0%
CTACTTGTCCATGGAAATTC+TGG + chr2.1:5493434-5493453 None:intergenic 40.0%
CTCAAGTTTGCAAATGCATG+TGG - chr2.1:5493748-5493767 MS.gene98726:CDS 40.0%
CTTGCAAGGACTAAGTGATA+TGG + chr2.1:5492148-5492167 None:intergenic 40.0%
GATCTTAAAGGAAAACGGTG+TGG - chr2.1:5491654-5491673 MS.gene98726:intron 40.0%
GGTTAGGATCATAAGAGAGA+AGG + chr2.1:5493076-5493095 None:intergenic 40.0%
GTCCAATGGTAGAAACAAGT+GGG - chr2.1:5492308-5492327 MS.gene98726:intron 40.0%
TCAAGCTTATGGATCCATAG+TGG + chr2.1:5492992-5493011 None:intergenic 40.0%
TCCATGGAAATTCTGGCAAA+AGG + chr2.1:5493427-5493446 None:intergenic 40.0%
TGAATGCATCTACTTGTCCA+TGG + chr2.1:5493443-5493462 None:intergenic 40.0%
TGGATCCATAAGCTTGATTG+TGG - chr2.1:5492995-5493014 MS.gene98726:intron 40.0%
TGGGGTCCATTATTAGATCT+AGG - chr2.1:5492005-5492024 MS.gene98726:CDS 40.0%
TGTAAAAGGGTCTAATTCGG+CGG + chr2.1:5492355-5492374 None:intergenic 40.0%
! CAAGGTTAGTGATAATGAGC+TGG - chr2.1:5493172-5493191 MS.gene98726:intron 40.0%
! CAGGCAAAAGTTTTCCACTA+TGG - chr2.1:5492975-5492994 MS.gene98726:intron 40.0%
! GAAGGTATAACCTTTGACCA+AGG - chr2.1:5491682-5491701 MS.gene98726:intron 40.0%
! TTAAGAAGCATGTCAGCACT+TGG + chr2.1:5491778-5491797 None:intergenic 40.0%
! TTCAAGTGTGCTGATCTACA+TGG + chr2.1:5493023-5493042 None:intergenic 40.0%
! TTCCTTTGTTGGTGCTCTAT+TGG - chr2.1:5493497-5493516 MS.gene98726:CDS 40.0%
!! CAATTTTGTCACTTCCAGTG+AGG + chr2.1:5493202-5493221 None:intergenic 40.0%
!! CGTTGGTAGGTTTTATCAGT+GGG - chr2.1:5492608-5492627 MS.gene98726:intron 40.0%
!! GTTGGTAGGTTTTATCAGTG+GGG - chr2.1:5492609-5492628 MS.gene98726:intron 40.0%
!! TCATATAGTATCGGTAGCTC+TGG + chr2.1:5492050-5492069 None:intergenic 40.0%
!! TTGGTAGGTTTTATCAGTGG+GGG - chr2.1:5492610-5492629 MS.gene98726:intron 40.0%
!!! ACCGTTTTCCTTTAAGATCC+CGG + chr2.1:5491653-5491672 None:intergenic 40.0%
!!! GTCCCTACTTTTTGTACTGT+TGG - chr2.1:5493322-5493341 MS.gene98726:intron 40.0%
!!! TGATTTTGTTTTGGTGGGTG+GGG - chr2.1:5492078-5492097 MS.gene98726:CDS 40.0%
AAACTAGGCGATGACGAGTT+CGG - chr2.1:5491616-5491635 MS.gene98726:intron 45.0%
AAGTTGCTCCTTGTCACTCT+TGG - chr2.1:5493260-5493279 MS.gene98726:intron 45.0%
AGCACCAACAAAGGAATCAC+CGG + chr2.1:5493493-5493512 None:intergenic 45.0%
AGTCCTTGCAAGTCAAACGA+AGG - chr2.1:5492156-5492175 MS.gene98726:CDS 45.0%
AGTTCGAGGTTGAGTTCTTC+AGG + chr2.1:5491802-5491821 None:intergenic 45.0%
ATCAGCACACTTGAAGGCAA+TGG - chr2.1:5493028-5493047 MS.gene98726:intron 45.0%
ATGGAAGTTGCCAAAGAAGC+TGG - chr2.1:5493047-5493066 MS.gene98726:intron 45.0%
CATAAACTCACGCTCTCCAT+CGG + chr2.1:5491743-5491762 None:intergenic 45.0%
CATGTTCACCAAGAGTGACA+AGG + chr2.1:5493271-5493290 None:intergenic 45.0%
CTTGTCACTCTTGGTGAACA+TGG - chr2.1:5493269-5493288 MS.gene98726:intron 45.0%
GATCCAATTGTAAGACCGGT+TGG - chr2.1:5492286-5492305 MS.gene98726:intron 45.0%
GCCGGGATCTTAAAGGAAAA+CGG - chr2.1:5491649-5491668 MS.gene98726:intron 45.0%
GGAAAAGGCTGATCTGATCA+AGG - chr2.1:5493154-5493173 MS.gene98726:intron 45.0%
GGCCTGATCATCAACAATCT+TGG + chr2.1:5493523-5493542 None:intergenic 45.0%
GGTCCAATGGTAGAAACAAG+TGG - chr2.1:5492307-5492326 MS.gene98726:intron 45.0%
GTACAGATCTGATGAGTTCG+AGG + chr2.1:5491816-5491835 None:intergenic 45.0%
GTTTCTACCATTGGACCAAC+CGG + chr2.1:5492304-5492323 None:intergenic 45.0%
TGGCTCCACAATCAAGCTTA+TGG + chr2.1:5493003-5493022 None:intergenic 45.0%
TTCAGTACATCCTCCTCCTT+GGG + chr2.1:5493814-5493833 None:intergenic 45.0%
! ACAGTTGATACAACTGGTGC+CGG - chr2.1:5493471-5493490 MS.gene98726:CDS 45.0%
! ATAGCATACGACGAAAGCGT+TGG - chr2.1:5492591-5492610 MS.gene98726:intron 45.0%
! CCCTTTTGCCAGAATTTCCA+TGG - chr2.1:5493423-5493442 MS.gene98726:intron 45.0%
!! CACCCACTTGTTTCTACCAT+TGG + chr2.1:5492313-5492332 None:intergenic 45.0%
!! GATCCTTCGTTTGACTTGCA+AGG + chr2.1:5492162-5492181 None:intergenic 45.0%
!! GCGTTGGTAGGTTTTATCAG+TGG - chr2.1:5492607-5492626 MS.gene98726:intron 45.0%
!! GGCCAAGATTGTTGATGATC+AGG - chr2.1:5493518-5493537 MS.gene98726:CDS 45.0%
!! TGGTAGGTTTTATCAGTGGG+GGG - chr2.1:5492611-5492630 MS.gene98726:intron 45.0%
!!! GATTTTGTTTTGGTGGGTGG+GGG - chr2.1:5492079-5492098 MS.gene98726:CDS 45.0%
AATGAGCTGGAGTTCCTCAC+TGG - chr2.1:5493185-5493204 MS.gene98726:intron 50.0%
AATTCCTGCTCTTCCCAAGG+AGG - chr2.1:5493798-5493817 MS.gene98726:CDS 50.0%
ACTTTGTCCCAACAGTCTCC+GGG - chr2.1:5491488-5491507 MS.gene98726:CDS 50.0%
AGCAATTCCTGCTCTTCCCA+AGG - chr2.1:5493795-5493814 MS.gene98726:CDS 50.0%
AGTACGTGCACCTTGGTCAA+AGG + chr2.1:5491695-5491714 None:intergenic 50.0%
ATCGCCTAGTTTCCCGACAA+AGG + chr2.1:5491608-5491627 None:intergenic 50.0%
CGACATTGACATGTCAGCGT+TGG - chr2.1:5491969-5491988 MS.gene98726:CDS 50.0%
CGTTGGTGTGTTCATGTGGT+GGG - chr2.1:5491986-5492005 MS.gene98726:CDS 50.0%
GAAATTCTGGCAAAAGGGGC+AGG + chr2.1:5493421-5493440 None:intergenic 50.0%
GACTTTGTCCCAACAGTCTC+CGG - chr2.1:5491487-5491506 MS.gene98726:CDS 50.0%
GGACCAACCGGTCTTACAAT+TGG + chr2.1:5492292-5492311 None:intergenic 50.0%
GGGTGCATGATGCTCATTTG+TGG - chr2.1:5492328-5492347 MS.gene98726:intron 50.0%
GTTCAGTACATCCTCCTCCT+TGG + chr2.1:5493815-5493834 None:intergenic 50.0%
GTTGGTGTGTTCATGTGGTG+GGG - chr2.1:5491987-5492006 MS.gene98726:CDS 50.0%
TCCTAATCGGGAAACAGCGA+TGG + chr2.1:5491575-5491594 None:intergenic 50.0%
TGGCGCAAGATACTACACCA+AGG - chr2.1:5493289-5493308 MS.gene98726:intron 50.0%
TTTGTTACTCTACGCGCCGA+TGG - chr2.1:5491724-5491743 MS.gene98726:CDS 50.0%
! ACTGGTCTCATCGTCAGCTT+CGG - chr2.1:5491451-5491470 MS.gene98726:CDS 50.0%
! ATCGCTGTTTCCCGATTAGG+AGG - chr2.1:5491574-5491593 MS.gene98726:intron 50.0%
! GGCCAATAGAGCACCAACAA+AGG + chr2.1:5493502-5493521 None:intergenic 50.0%
! TGTAAGACCGGTTGGTCCAA+TGG - chr2.1:5492294-5492313 MS.gene98726:intron 50.0%
!! AGGTTTTATCAGTGGGGGGT+TGG - chr2.1:5492615-5492634 MS.gene98726:intron 50.0%
!! CATACGACGAAAGCGTTGGT+AGG - chr2.1:5492595-5492614 MS.gene98726:intron 50.0%
!! GGTTTTATCAGTGGGGGGTT+GGG - chr2.1:5492616-5492635 MS.gene98726:intron 50.0%
!! TCAGCGTTGGTGTGTTCATG+TGG - chr2.1:5491982-5492001 MS.gene98726:CDS 50.0%
AGCAATGGCATCCCAACCAC+AGG - chr2.1:5491427-5491446 MS.gene98726:CDS 55.0%
AGGCGGCTTTGCCTCCTAAT+CGG + chr2.1:5491588-5491607 None:intergenic 55.0%
ATGAGACCAGTGCCTGTGGT+TGG + chr2.1:5491442-5491461 None:intergenic 55.0%
CATGCTCGCCGGGATCTTAA+AGG - chr2.1:5491642-5491661 MS.gene98726:intron 55.0%
CCAAAGCAGTACGTGCACCT+TGG + chr2.1:5491702-5491721 None:intergenic 55.0%
CCAAGGTGCACGTACTGCTT+TGG - chr2.1:5491699-5491718 MS.gene98726:intron 55.0%
CTTTGTCCCAACAGTCTCCG+GGG - chr2.1:5491489-5491508 MS.gene98726:CDS 55.0%
GAAAACGGTGTGGTCGCAGA+AGG - chr2.1:5491664-5491683 MS.gene98726:intron 55.0%
GAGAAGGCAGCCAGCTTCTT+TGG + chr2.1:5493060-5493079 None:intergenic 55.0%
GCCTAGTTTCCCGACAAAGG+CGG + chr2.1:5491605-5491624 None:intergenic 55.0%
TGAGACCAGTGCCTGTGGTT+GGG + chr2.1:5491441-5491460 None:intergenic 55.0%
TTGCGAGCTTCATCAGCCGA+GGG + chr2.1:5493116-5493135 None:intergenic 55.0%
! GCCATCGCTGTTTCCCGATT+AGG - chr2.1:5491571-5491590 MS.gene98726:intron 55.0%
! GCGTTGGTGTGTTCATGTGG+TGG - chr2.1:5491985-5492004 MS.gene98726:CDS 55.0%
! TTTGGTGGGTGGGGGTTGTT+TGG - chr2.1:5492087-5492106 MS.gene98726:CDS 55.0%
!! GGTGCCGGTGATTCCTTTGT+TGG - chr2.1:5493486-5493505 MS.gene98726:CDS 55.0%
ACAGCGATGGCAACGTTCGC+TGG + chr2.1:5491562-5491581 None:intergenic 60.0%
AGTTCGGTCACATGCTCGCC+GGG - chr2.1:5491632-5491651 MS.gene98726:intron 60.0%
CACAAGGGTAGGCGGAGGTT+AGG + chr2.1:5493092-5493111 None:intergenic 60.0%
CCCGGTTTCCTCAAAGCTCC+CGG - chr2.1:5491529-5491548 MS.gene98726:intron 60.0%
CTAACCTCCGCCTACCCTTG+TGG - chr2.1:5493090-5493109 MS.gene98726:intron 60.0%
CTTGCGAGCTTCATCAGCCG+AGG + chr2.1:5493117-5493136 None:intergenic 60.0%
GACGATGAGACCAGTGCCTG+TGG + chr2.1:5491446-5491465 None:intergenic 60.0%
GAGGCAAAGCCGCCTTTGTC+GGG - chr2.1:5491593-5491612 MS.gene98726:intron 60.0%
GAGTTCGGTCACATGCTCGC+CGG - chr2.1:5491631-5491650 MS.gene98726:intron 60.0%
GCCGCCTTTGTCGGGAAACT+AGG - chr2.1:5491601-5491620 MS.gene98726:intron 60.0%
GGAGGCAAAGCCGCCTTTGT+CGG - chr2.1:5491592-5491611 MS.gene98726:intron 60.0%
GGCGGCTTTGCCTCCTAATC+GGG + chr2.1:5491587-5491606 None:intergenic 60.0%
GGTTTCCTCAAAGCTCCCGG+CGG - chr2.1:5491532-5491551 MS.gene98726:intron 60.0%
GTGGGTGGGGGTTGTTTGGT+TGG - chr2.1:5492091-5492110 MS.gene98726:CDS 60.0%
TCATCAGCCGAGGGCCACAA+GGG + chr2.1:5493107-5493126 None:intergenic 60.0%
TCCTCCTCCTTGGGAAGAGC+AGG + chr2.1:5493805-5493824 None:intergenic 60.0%
TCCTGCTCTTCCCAAGGAGG+AGG - chr2.1:5493801-5493820 MS.gene98726:CDS 60.0%
TTCATCAGCCGAGGGCCACA+AGG + chr2.1:5493108-5493127 None:intergenic 60.0%
!! CCGGGAGCTTTGAGGAAACC+GGG + chr2.1:5491532-5491551 None:intergenic 60.0%
!! CGGGAGCTTTGAGGAAACCG+GGG + chr2.1:5491531-5491550 None:intergenic 60.0%
!! GCCGGGAGCTTTGAGGAAAC+CGG + chr2.1:5491533-5491552 None:intergenic 60.0%
!! GGGAGCTTTGAGGAAACCGG+GGG + chr2.1:5491530-5491549 None:intergenic 60.0%
AACGTTCGCTGGTGCACCGC+CGG + chr2.1:5491551-5491570 None:intergenic 65.0%
AGGGAGACCCCGGAGACTGT+TGG + chr2.1:5491499-5491518 None:intergenic 65.0%
GAAACCGGGGGCTTCTGCGA+GGG + chr2.1:5491518-5491537 None:intergenic 65.0%
GGCATCCCAACCACAGGCAC+TGG - chr2.1:5491433-5491452 MS.gene98726:CDS 65.0%
GGGAGACCCCGGAGACTGTT+GGG + chr2.1:5491498-5491517 None:intergenic 65.0%
GTGGGGGGTTGGGATTTCGC+TGG - chr2.1:5492626-5492645 MS.gene98726:intron 65.0%
ACGTTCGCTGGTGCACCGCC+GGG + chr2.1:5491550-5491569 None:intergenic 70.0%
AGGGCCACAAGGGTAGGCGG+AGG + chr2.1:5493097-5493116 None:intergenic 70.0%
CAGCCGAGGGCCACAAGGGT+AGG + chr2.1:5493103-5493122 None:intergenic 70.0%
CCGAGGGCCACAAGGGTAGG+CGG + chr2.1:5493100-5493119 None:intergenic 70.0%
CCGCCTACCCTTGTGGCCCT+CGG - chr2.1:5493097-5493116 MS.gene98726:intron 70.0%
GGAAACCGGGGGCTTCTGCG+AGG + chr2.1:5491519-5491538 None:intergenic 70.0%
GGCTTCTGCGAGGGAGACCC+CGG + chr2.1:5491509-5491528 None:intergenic 70.0%
GTCTCCCTCGCAGAAGCCCC+CGG - chr2.1:5491511-5491530 MS.gene98726:CDS 70.0%
GTGCACCGCCGGGAGCTTTG+AGG + chr2.1:5491540-5491559 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 5491418 5493849 5491418 ID=MS.gene98726
chr2.1 mRNA 5491418 5493849 5491418 ID=MS.gene98726.t1;Parent=MS.gene98726
chr2.1 exon 5493436 5493849 5493436 ID=MS.gene98726.t1.exon1;Parent=MS.gene98726.t1
chr2.1 CDS 5493436 5493849 5493436 ID=cds.MS.gene98726.t1;Parent=MS.gene98726.t1
chr2.1 exon 5491957 5492289 5491957 ID=MS.gene98726.t1.exon2;Parent=MS.gene98726.t1
chr2.1 CDS 5491957 5492289 5491957 ID=cds.MS.gene98726.t1;Parent=MS.gene98726.t1
chr2.1 exon 5491716 5491832 5491716 ID=MS.gene98726.t1.exon3;Parent=MS.gene98726.t1
chr2.1 CDS 5491716 5491832 5491716 ID=cds.MS.gene98726.t1;Parent=MS.gene98726.t1
chr2.1 exon 5491418 5491543 5491418 ID=MS.gene98726.t1.exon4;Parent=MS.gene98726.t1
chr2.1 CDS 5491418 5491543 5491418 ID=cds.MS.gene98726.t1;Parent=MS.gene98726.t1
Gene Sequence

>MS.gene98726

ATGGCTTCAAGCAATGGCATCCCAACCACAGGCACTGGTCTCATCGTCAGCTTCGGTGAGATGCTGATTGACTTTGTCCCAACAGTCTCCGGGGTCTCCCTCGCAGAAGCCCCCGGTTTCCTCAAAGCTCCCGGCGGTGCACCAGCGAACGTTGCCATCGCTGTTTCCCGATTAGGAGGCAAAGCCGCCTTTGTCGGGAAACTAGGCGATGACGAGTTCGGTCACATGCTCGCCGGGATCTTAAAGGAAAACGGTGTGGTCGCAGAAGGTATAACCTTTGACCAAGGTGCACGTACTGCTTTGGCGTTTGTTACTCTACGCGCCGATGGAGAGCGTGAGTTTATGTTTTATAGAAATCCAAGTGCTGACATGCTTCTTAAACCTGAAGAACTCAACCTCGAACTCATCAGATCTGTACGTAACATAACAACTTTATCTATCTCTTTTGTTTTTTGTTATGTTTTGTTTTTCTGTAGTACTTTGTTGTTTCGATGTTATTTTCGTATCTGTGTCTTGTTTGTAACGACTTCAAATTTGTGTGTTGAGGTAAACGACATTGACATGTCAGCGTTGGTGTGTTCATGTGGTGGGGTCCATTATTAGATCTAGGACTAATCTTACGTTACGCACCAGAGCTACCGATACTATATGATATGGTTTTGATTTTGTTTTGGTGGGTGGGGGTTGTTTGGTTGGTGTTATTGTTACTATGTAGAGTAAATTACGGCCATATCACTTAGTCCTTGCAAGTCAAACGAAGGATCAAGTTATCTAACATATTCAAAATTGAGGTCTTTTTATATGTTTAGTCTAATGGGCACAGTCTTGTACCGTGTACAAATTTATTAGGAAGATTGGCTGAACTTTTGATCCAATTGTAAGACCGGTTGGTCCAATGGTAGAAACAAGTGGGTGCATGATGCTCATTTGTGGACCGCCGAATTAGACCCTTTTACATATCTACAAAATTTAGAAATGTTGGTCCTATAATTTTATAGACGAATTGTATTTTACTCTTACCATGTAGTAATTTCTTTATTCTCACTACACGTGATTCACGTGCCATTTGATAGTTACCATTACGTAGGAAAAAAAAAAAAAGGATTAGGATGATGATGAATCATTTTTTGATCCAGTTGATTTTCTTTAATGTTTCCTCAGAATCCAACAATAATAGCATACGACGAAAGCGTTGGTAGGTTTTATCAGTGGGGGGTTGGGATTTCGCTGGAGCAATTATATTTCATGGCGTGGTGTCCAATTCTTTTTATTTTTCTAGAATTTAAATAATGCAACTTGTGGTTATTCAAACATATATAAAAATTAATATATAAATTCGCATGGTGTTTCACGCCGTGTTACATCATTGACTAAGTACATTATTTGGCAGCTTATTCATGCCATGTGTAATAATCAAATTCAAATTCGTATAGTGAACTAAAAATCTGTTAAAAAATTATCATTGTTAAAATTACTGCCTTGGTTGAATTGTGTGATTTACCATTTGAGTAATTATGAATGGGGTAGGTGACTAACTGAAACTTAATTTTAATTTGACAGGCAAAAGTTTTCCACTATGGATCCATAAGCTTGATTGTGGAGCCATGTAGATCAGCACACTTGAAGGCAATGGAAGTTGCCAAAGAAGCTGGCTGCCTTCTCTCTTATGATCCTAACCTCCGCCTACCCTTGTGGCCCTCGGCTGATGAAGCTCGCAAGCAAATACTGAGTATTTGGGAAAAGGCTGATCTGATCAAGGTTAGTGATAATGAGCTGGAGTTCCTCACTGGAAGTGACAAAATTGATGATGCTACTGCTTTGACATTGTGGCACCCAAATTTGAAGTTGCTCCTTGTCACTCTTGGTGAACATGGCGCAAGATACTACACCAAGGTAAAATCTATGTCCCTACTTTTTGTACTGTTGGTTGTTAAACTTTGTCTAAAAACTGTAAACCAAAGAATATCTTTGTTTAGAAACACTAATGAGTTTTTTTTTTGCCTGCCCCTTTTGCCAGAATTTCCATGGACAAGTAGATGCATTCAAAGTCAATACAGTTGATACAACTGGTGCCGGTGATTCCTTTGTTGGTGCTCTATTGGCCAAGATTGTTGATGATCAGGCCATATTAGAAGTAAGTGCTTAGGGCTAACCCCTTAATACACATTAGCTACTCAAATGGAAATACACAAGTTTAACTGATTTTGTTTTTAATTTTCTAATATTATCTAAATTTCTGAGTAACGCACTATAAAGCCCCGTTTGAGTTTTTGTAATTGATGATTGATTTATTTTCATAATTGCAGGATGAATCAAAGTTAAGAGAAGTACTCAAGTTTGCAAATGCATGTGGAGCAATCACAACTACTAAAAAGGGAGCAATTCCTGCTCTTCCCAAGGAGGAGGATGTACTGAACCTGATCAAAGCATAG
Protein sequence

>MS.gene98726.t1

MASSNGIPTTGTGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGKAAFVGKLGDDEFGHMLAGILKENGVVAEGITFDQGARTALAFVTLRADGEREFMFYRNPSADMLLKPEELNLELIRSAKVFHYGSISLIVEPCRSAHLKAMEVAKEAGCLLSYDPNLRLPLWPSADEARKQILSIWEKADLIKVSDNELEFLTGSDKIDDATALTLWHPNLKLLLVTLGEHGARYYTKNFHGQVDAFKVNTVDTTGAGDSFVGALLAKIVDDQAILEDESKLREVLKFANACGAITTTKKGAIPALPKEEDVLNLIKA