Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00497.t1 | XP_003589086.1 | 100 | 267 | 0 | 0 | 1 | 267 | 1 | 267 | 5.50E-151 | 543.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00497.t1 | A0A109QYD3 | 96.2 | 265 | 10 | 0 | 4 | 268 | 3 | 267 | 1.1e-147 | 523.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00497.t1 | G7ICD6 | 100.0 | 267 | 0 | 0 | 1 | 267 | 1 | 267 | 4.0e-151 | 543.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene00497 | MS.gene29395 | PPI |
| MS.gene89421 | MS.gene00497 | PPI |
| MS.gene00497 | MS.gene44503 | PPI |
| MS.gene00497 | MS.gene041911 | PPI |
| MS.gene00497 | MS.gene019036 | PPI |
| MS.gene00497 | MS.gene03694 | PPI |
| MS.gene011748 | MS.gene00497 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00497.t1 | MTR_1g018320 | 99.627 | 268 | 1 | 0 | 1 | 268 | 1 | 268 | 0.0 | 556 |
| MS.gene00497.t1 | MTR_5g016150 | 57.831 | 249 | 103 | 2 | 8 | 255 | 6 | 253 | 2.66e-108 | 315 |
| MS.gene00497.t1 | MTR_4g095310 | 57.430 | 249 | 104 | 2 | 8 | 255 | 6 | 253 | 8.01e-108 | 313 |
| MS.gene00497.t1 | MTR_6g086560 | 43.750 | 256 | 141 | 3 | 10 | 263 | 21 | 275 | 4.08e-77 | 235 |
| MS.gene00497.t1 | MTR_3g045440 | 37.308 | 260 | 161 | 2 | 5 | 263 | 7 | 265 | 1.29e-71 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00497.t1 | AT3G03990 | 76.493 | 268 | 62 | 1 | 1 | 268 | 1 | 267 | 6.43e-156 | 435 |
| MS.gene00497.t1 | AT4G37470 | 54.217 | 249 | 112 | 2 | 8 | 255 | 6 | 253 | 4.68e-101 | 296 |
| MS.gene00497.t1 | AT3G24420 | 40.323 | 248 | 145 | 3 | 9 | 254 | 13 | 259 | 2.80e-72 | 223 |
Find 80 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATCTGAGAGGGATTCT+AGG | 0.307455 | 1.2:-5016595 | MS.gene00497:CDS |
| TTCTTACTTGGCTCATCAAC+TGG | 0.321228 | 1.2:-5016422 | MS.gene00497:CDS |
| TTTGAGTGCTCCTTCTTACT+TGG | 0.356624 | 1.2:-5016434 | MS.gene00497:CDS |
| ATATATCTCTCTTTGTTTCA+AGG | 0.366469 | 1.2:-5016630 | MS.gene00497:CDS |
| TTCTCCAAACTCATCCTTAT+CGG | 0.376252 | 1.2:-5016994 | MS.gene00497:CDS |
| GGCGAGAGACATGTCGGTTC+CGG | 0.382403 | 1.2:-5016539 | MS.gene00497:CDS |
| ACGGCGGTAATCAAAGTAAT+CGG | 0.390518 | 1.2:+5017152 | None:intergenic |
| ATGAGTTTGGAGAAGAGCTC+AGG | 0.397953 | 1.2:+5017003 | None:intergenic |
| GGCACCGATAAGGATGAGTT+TGG | 0.410969 | 1.2:+5016990 | None:intergenic |
| TTGTAGCTGCGGGTGAAGTA+AGG | 0.413149 | 1.2:+5017216 | None:intergenic |
| GCACTCAATGTCCGCGTAGA+AGG | 0.420226 | 1.2:-5017309 | MS.gene00497:CDS |
| GCACGCGCTGCCATGCTGAT+TGG | 0.438801 | 1.2:+5017241 | None:intergenic |
| GAAGAGTACGGTGCAGTGGC+TGG | 0.442043 | 1.2:-5016479 | MS.gene00497:CDS |
| CGGCGGTAATCAAAGTAATC+GGG | 0.456759 | 1.2:+5017153 | None:intergenic |
| ATCGTCTTCGCTCACGGCTT+CGG | 0.463258 | 1.2:-5017270 | MS.gene00497:CDS |
| CATTCCGATCATGGCGGAGA+TGG | 0.464700 | 1.2:+5017044 | None:intergenic |
| GAAACAAAGAGAGATATATC+TGG | 0.473936 | 1.2:+5016634 | None:intergenic |
| AGGGATTCTAGGACTGGTTA+AGG | 0.482320 | 1.2:-5016584 | MS.gene00497:CDS |
| GGAAGCTAGCATTCCGATCA+TGG | 0.490032 | 1.2:+5017035 | None:intergenic |
| CACTCCATCTCCGCCATGAT+CGG | 0.492864 | 1.2:-5017048 | MS.gene00497:CDS |
| GACATTGAGTGCGTCGAGGA+TGG | 0.507337 | 1.2:+5017320 | None:intergenic |
| GAGAATGACTTTGTAGCTGC+GGG | 0.519156 | 1.2:+5017206 | None:intergenic |
| CTCTATGACCTCGTTTGCGC+CGG | 0.520296 | 1.2:-5017186 | MS.gene00497:CDS |
| ATGTACGTCGCCACCGTCGC+CGG | 0.520997 | 1.2:+5016520 | None:intergenic |
| GAGTGACATGGAGGGAATCA+AGG | 0.521478 | 1.2:+5017088 | None:intergenic |
| AGACATGTCGGTTCCGGCGA+CGG | 0.526809 | 1.2:-5016533 | MS.gene00497:CDS |
| ACCTTGTTGTATCATGCAAA+CGG | 0.527204 | 1.2:-5016560 | MS.gene00497:CDS |
| AACTATGAAGCGTGGGTGAA+CGG | 0.527608 | 1.2:-5016733 | MS.gene00497:CDS |
| AAATACATCGTCTTCGCTCA+CGG | 0.531057 | 1.2:-5017276 | MS.gene00497:CDS |
| GCGCTGCCATGCTGATTGGT+CGG | 0.531257 | 1.2:+5017245 | None:intergenic |
| ACCTTGGGGAGGCACCGATA+AGG | 0.531923 | 1.2:+5016980 | None:intergenic |
| AGTTGATGAGCCAAGTAAGA+AGG | 0.537021 | 1.2:+5016424 | None:intergenic |
| ACATCGGCCCCGACAGCCAG+TGG | 0.545877 | 1.2:+5016703 | None:intergenic |
| GAAAATTCTCGAACAGCTGT+CGG | 0.549866 | 1.2:+5016679 | None:intergenic |
| GTGCAGTGGCTGGACACGGA+GGG | 0.550308 | 1.2:-5016469 | MS.gene00497:CDS |
| GCATCTTGGCGGGAAGAGTA+CGG | 0.553116 | 1.2:-5016491 | MS.gene00497:CDS |
| GAAGAGCTCAGGGCGGCGAA+TGG | 0.553284 | 1.2:+5017014 | None:intergenic |
| TCCTTATCGGTGCCTCCCCA+AGG | 0.565234 | 1.2:-5016981 | MS.gene00497:intron |
| AATGTCCGCGTAGAAGGCTC+CGG | 0.565395 | 1.2:-5017303 | MS.gene00497:CDS |
| TCTGAGAGGGATTCTAGGAC+TGG | 0.566008 | 1.2:-5016590 | MS.gene00497:CDS |
| TACATGAAGGAGCATCTTGG+CGG | 0.568823 | 1.2:-5016502 | MS.gene00497:CDS |
| GGAGGGAATCAAGGATGTTG+AGG | 0.569664 | 1.2:+5017097 | None:intergenic |
| TAAGAAGGAGCACTCAAATG+AGG | 0.570745 | 1.2:+5016439 | None:intergenic |
| CATGTCGGTTCCGGCGACGG+TGG | 0.570777 | 1.2:-5016530 | MS.gene00497:CDS |
| GTAATCGGGGTTGACACTGC+CGG | 0.571888 | 1.2:+5017167 | None:intergenic |
| ACATGAAGGAGCATCTTGGC+GGG | 0.572349 | 1.2:-5016501 | MS.gene00497:CDS |
| TTACCACGGAGGATTCGAGC+AGG | 0.573004 | 1.2:-5016791 | MS.gene00497:CDS |
| TGTAGCTGCGGGTGAAGTAA+GGG | 0.576477 | 1.2:+5017217 | None:intergenic |
| TACGGTGCAGTGGCTGGACA+CGG | 0.580670 | 1.2:-5016473 | MS.gene00497:CDS |
| TGCAGTGGCTGGACACGGAG+GGG | 0.583201 | 1.2:-5016468 | MS.gene00497:CDS |
| CGTAAGCACAGCGAGTGACA+TGG | 0.585487 | 1.2:+5017076 | None:intergenic |
| TGAGTTTGGAGAAGAGCTCA+GGG | 0.586698 | 1.2:+5017004 | None:intergenic |
| GCGGGAAGAGTACGGTGCAG+TGG | 0.588508 | 1.2:-5016483 | MS.gene00497:CDS |
| GGTGCAGTGGCTGGACACGG+AGG | 0.590752 | 1.2:-5016470 | MS.gene00497:CDS |
| AGAGAATGACTTTGTAGCTG+CGG | 0.594196 | 1.2:+5017205 | None:intergenic |
| ACGTACATGAAGGAGCATCT+TGG | 0.596989 | 1.2:-5016505 | MS.gene00497:CDS |
| GGAAGCAAACTATGAAGCGT+GGG | 0.598905 | 1.2:-5016740 | MS.gene00497:CDS |
| GACGGTGGCGACGTACATGA+AGG | 0.605329 | 1.2:-5016515 | MS.gene00497:CDS |
| TCGAACAGCTGTCGGAACAT+CGG | 0.607669 | 1.2:+5016687 | None:intergenic |
| TGGAAGCAAACTATGAAGCG+TGG | 0.621196 | 1.2:-5016741 | MS.gene00497:CDS |
| GAAGACGATGTATTTGTCGC+CGG | 0.622717 | 1.2:+5017284 | None:intergenic |
| TGACACTGCCGGCGCAAACG+AGG | 0.625635 | 1.2:+5017178 | None:intergenic |
| CTCCCTGCTCGAATCCTCCG+TGG | 0.639416 | 1.2:+5016788 | None:intergenic |
| TACCACGGAGGATTCGAGCA+GGG | 0.646227 | 1.2:-5016790 | MS.gene00497:CDS |
| TCGGCACCGACCAATCAGCA+TGG | 0.652659 | 1.2:-5017251 | MS.gene00497:CDS |
| GCAAACGGCGAGAGACATGT+CGG | 0.653403 | 1.2:-5016545 | MS.gene00497:CDS |
| AATGTTGTGTTACCTTGGGG+AGG | 0.656956 | 1.2:+5016969 | None:intergenic |
| GGCGGTAATCAAAGTAATCG+GGG | 0.662111 | 1.2:+5017154 | None:intergenic |
| AAGCGTCAAGAGTTGTGTAA+CGG | 0.665000 | 1.2:+5017133 | None:intergenic |
| CGCGGACATTGAGTGCGTCG+AGG | 0.666130 | 1.2:+5017316 | None:intergenic |
| GTCACTCGCTGTGCTTACGT+CGG | 0.667019 | 1.2:-5017072 | MS.gene00497:CDS |
| AGCACAGCGAGTGACATGGA+GGG | 0.676899 | 1.2:+5017080 | None:intergenic |
| AAGCACAGCGAGTGACATGG+AGG | 0.687707 | 1.2:+5017079 | None:intergenic |
| GCCGTTTGCATGATACAACA+AGG | 0.702795 | 1.2:+5016559 | None:intergenic |
| AACGACGGTGAAAATTACCA+CGG | 0.704427 | 1.2:-5016805 | MS.gene00497:CDS |
| CGTCAAGAGTTGTGTAACGG+CGG | 0.709660 | 1.2:+5017136 | None:intergenic |
| AGCTAGCATTCCGATCATGG+CGG | 0.731839 | 1.2:+5017038 | None:intergenic |
| TGTCGCCGGAGCCTTCTACG+CGG | 0.759408 | 1.2:+5017298 | None:intergenic |
| GACGGTGAAAATTACCACGG+AGG | 0.766831 | 1.2:-5016802 | MS.gene00497:CDS |
| GTTTGGAGAAGAGCTCAGGG+CGG | 0.795181 | 1.2:+5017007 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATCTCTCTTTGTTTCA+AGG | - | chr1.2:5017105-5017124 | MS.gene00497:CDS | 25.0% |
| !! | TTATTCAGATTTTTGAACGA+CGG | - | chr1.2:5016915-5016934 | MS.gene00497:intron | 25.0% |
| !!! | ATTTTAGTTATATCTGTCAG+CGG | + | chr1.2:5016877-5016896 | None:intergenic | 25.0% |
| GAAACAAAGAGAGATATATC+TGG | + | chr1.2:5017104-5017123 | None:intergenic | 30.0% | |
| ATGAATGTTGTGTTACCTTG+GGG | + | chr1.2:5016772-5016791 | None:intergenic | 35.0% | |
| GATGAATGTTGTGTTACCTT+GGG | + | chr1.2:5016773-5016792 | None:intergenic | 35.0% | |
| TGATGAATGTTGTGTTACCT+TGG | + | chr1.2:5016774-5016793 | None:intergenic | 35.0% | |
| TTCTCCAAACTCATCCTTAT+CGG | - | chr1.2:5016741-5016760 | MS.gene00497:CDS | 35.0% | |
| ! | ACCTTGTTGTATCATGCAAA+CGG | - | chr1.2:5017175-5017194 | MS.gene00497:CDS | 35.0% |
| ! | TTTTCAACAGTGATCTGAGA+GGG | - | chr1.2:5017132-5017151 | MS.gene00497:CDS | 35.0% |
| !!! | TGAGCAAGTTTTTTCAGCAA+TGG | - | chr1.2:5016974-5016993 | MS.gene00497:intron | 35.0% |
| AAATACATCGTCTTCGCTCA+CGG | - | chr1.2:5016459-5016478 | MS.gene00497:CDS | 40.0% | |
| AACGACGGTGAAAATTACCA+CGG | - | chr1.2:5016930-5016949 | MS.gene00497:intron | 40.0% | |
| AAGCGTCAAGAGTTGTGTAA+CGG | + | chr1.2:5016605-5016624 | None:intergenic | 40.0% | |
| ACGGCGGTAATCAAAGTAAT+CGG | + | chr1.2:5016586-5016605 | None:intergenic | 40.0% | |
| AGAGAATGACTTTGTAGCTG+CGG | + | chr1.2:5016533-5016552 | None:intergenic | 40.0% | |
| CTGTCAGCGGTTATATTCAT+AGG | + | chr1.2:5016864-5016883 | None:intergenic | 40.0% | |
| GAAAATTCTCGAACAGCTGT+CGG | + | chr1.2:5017059-5017078 | None:intergenic | 40.0% | |
| TTCTTACTTGGCTCATCAAC+TGG | - | chr1.2:5017313-5017332 | MS.gene00497:CDS | 40.0% | |
| TTTGAGTGCTCCTTCTTACT+TGG | - | chr1.2:5017301-5017320 | MS.gene00497:CDS | 40.0% | |
| ! | GTTTTCAACAGTGATCTGAG+AGG | - | chr1.2:5017131-5017150 | MS.gene00497:CDS | 40.0% |
| !! | AGTTGATGAGCCAAGTAAGA+AGG | + | chr1.2:5017314-5017333 | None:intergenic | 40.0% |
| !! | TAAGAAGGAGCACTCAAATG+AGG | + | chr1.2:5017299-5017318 | None:intergenic | 40.0% |
| AACTATGAAGCGTGGGTGAA+CGG | - | chr1.2:5017002-5017021 | MS.gene00497:CDS | 45.0% | |
| AATGTTGTGTTACCTTGGGG+AGG | + | chr1.2:5016769-5016788 | None:intergenic | 45.0% | |
| AGTGATCTGAGAGGGATTCT+AGG | - | chr1.2:5017140-5017159 | MS.gene00497:CDS | 45.0% | |
| ATGAGTTTGGAGAAGAGCTC+AGG | + | chr1.2:5016735-5016754 | None:intergenic | 45.0% | |
| CGGCGGTAATCAAAGTAATC+GGG | + | chr1.2:5016585-5016604 | None:intergenic | 45.0% | |
| GAAGACGATGTATTTGTCGC+CGG | + | chr1.2:5016454-5016473 | None:intergenic | 45.0% | |
| GAGAATGACTTTGTAGCTGC+GGG | + | chr1.2:5016532-5016551 | None:intergenic | 45.0% | |
| GCCGTTTGCATGATACAACA+AGG | + | chr1.2:5017179-5017198 | None:intergenic | 45.0% | |
| GGAAGCAAACTATGAAGCGT+GGG | - | chr1.2:5016995-5017014 | MS.gene00497:CDS | 45.0% | |
| GGCGGTAATCAAAGTAATCG+GGG | + | chr1.2:5016584-5016603 | None:intergenic | 45.0% | |
| TGAGTTTGGAGAAGAGCTCA+GGG | + | chr1.2:5016734-5016753 | None:intergenic | 45.0% | |
| TGGAAGCAAACTATGAAGCG+TGG | - | chr1.2:5016994-5017013 | MS.gene00497:CDS | 45.0% | |
| !! | ACGTACATGAAGGAGCATCT+TGG | - | chr1.2:5017230-5017249 | MS.gene00497:CDS | 45.0% |
| !! | AGGGATTCTAGGACTGGTTA+AGG | - | chr1.2:5017151-5017170 | MS.gene00497:CDS | 45.0% |
| !! | TACATGAAGGAGCATCTTGG+CGG | - | chr1.2:5017233-5017252 | MS.gene00497:CDS | 45.0% |
| AGCTAGCATTCCGATCATGG+CGG | + | chr1.2:5016700-5016719 | None:intergenic | 50.0% | |
| CGTCAAGAGTTGTGTAACGG+CGG | + | chr1.2:5016602-5016621 | None:intergenic | 50.0% | |
| GACGGTGAAAATTACCACGG+AGG | - | chr1.2:5016933-5016952 | MS.gene00497:intron | 50.0% | |
| GAGTGACATGGAGGGAATCA+AGG | + | chr1.2:5016650-5016669 | None:intergenic | 50.0% | |
| GGAAGCTAGCATTCCGATCA+TGG | + | chr1.2:5016703-5016722 | None:intergenic | 50.0% | |
| GGAGGGAATCAAGGATGTTG+AGG | + | chr1.2:5016641-5016660 | None:intergenic | 50.0% | |
| TCGAACAGCTGTCGGAACAT+CGG | + | chr1.2:5017051-5017070 | None:intergenic | 50.0% | |
| TGTAGCTGCGGGTGAAGTAA+GGG | + | chr1.2:5016521-5016540 | None:intergenic | 50.0% | |
| TTGTAGCTGCGGGTGAAGTA+AGG | + | chr1.2:5016522-5016541 | None:intergenic | 50.0% | |
| !! | ACATGAAGGAGCATCTTGGC+GGG | - | chr1.2:5017234-5017253 | MS.gene00497:CDS | 50.0% |
| !! | GGCACCGATAAGGATGAGTT+TGG | + | chr1.2:5016748-5016767 | None:intergenic | 50.0% |
| !! | TCTGAGAGGGATTCTAGGAC+TGG | - | chr1.2:5017145-5017164 | MS.gene00497:CDS | 50.0% |
| AAGCACAGCGAGTGACATGG+AGG | + | chr1.2:5016659-5016678 | None:intergenic | 55.0% | |
| AATGTCCGCGTAGAAGGCTC+CGG | - | chr1.2:5016432-5016451 | MS.gene00497:CDS | 55.0% | |
| AGCACAGCGAGTGACATGGA+GGG | + | chr1.2:5016658-5016677 | None:intergenic | 55.0% | |
| ATCGTCTTCGCTCACGGCTT+CGG | - | chr1.2:5016465-5016484 | MS.gene00497:CDS | 55.0% | |
| CACTCCATCTCCGCCATGAT+CGG | - | chr1.2:5016687-5016706 | MS.gene00497:CDS | 55.0% | |
| CGTAAGCACAGCGAGTGACA+TGG | + | chr1.2:5016662-5016681 | None:intergenic | 55.0% | |
| CTCTATGACCTCGTTTGCGC+CGG | - | chr1.2:5016549-5016568 | MS.gene00497:CDS | 55.0% | |
| GACATTGAGTGCGTCGAGGA+TGG | + | chr1.2:5016418-5016437 | None:intergenic | 55.0% | |
| GCAAACGGCGAGAGACATGT+CGG | - | chr1.2:5017190-5017209 | MS.gene00497:CDS | 55.0% | |
| GCACTCAATGTCCGCGTAGA+AGG | - | chr1.2:5016426-5016445 | MS.gene00497:CDS | 55.0% | |
| GCATCTTGGCGGGAAGAGTA+CGG | - | chr1.2:5017244-5017263 | MS.gene00497:CDS | 55.0% | |
| GTAATCGGGGTTGACACTGC+CGG | + | chr1.2:5016571-5016590 | None:intergenic | 55.0% | |
| GTCACTCGCTGTGCTTACGT+CGG | - | chr1.2:5016663-5016682 | MS.gene00497:CDS | 55.0% | |
| GTTTGGAGAAGAGCTCAGGG+CGG | + | chr1.2:5016731-5016750 | None:intergenic | 55.0% | |
| TACCACGGAGGATTCGAGCA+GGG | - | chr1.2:5016945-5016964 | MS.gene00497:intron | 55.0% | |
| TTACCACGGAGGATTCGAGC+AGG | - | chr1.2:5016944-5016963 | MS.gene00497:intron | 55.0% | |
| ! | CATTCCGATCATGGCGGAGA+TGG | + | chr1.2:5016694-5016713 | None:intergenic | 55.0% |
| ! | GGTGAACGGTTTTGCTCCAC+TGG | - | chr1.2:5017016-5017035 | MS.gene00497:CDS | 55.0% |
| !! | GGTTTTGCTCCACTGGCTGT+CGG | - | chr1.2:5017023-5017042 | MS.gene00497:CDS | 55.0% |
| !! | GTTTTGCTCCACTGGCTGTC+GGG | - | chr1.2:5017024-5017043 | MS.gene00497:CDS | 55.0% |
| !! | TTTTGCTCCACTGGCTGTCG+GGG | - | chr1.2:5017025-5017044 | MS.gene00497:CDS | 55.0% |
| GACGGTGGCGACGTACATGA+AGG | - | chr1.2:5017220-5017239 | MS.gene00497:CDS | 60.0% | |
| TACGGTGCAGTGGCTGGACA+CGG | - | chr1.2:5017262-5017281 | MS.gene00497:CDS | 60.0% | |
| ! | GAAGAGTACGGTGCAGTGGC+TGG | - | chr1.2:5017256-5017275 | MS.gene00497:CDS | 60.0% |
| ! | GCGCTGCCATGCTGATTGGT+CGG | + | chr1.2:5016493-5016512 | None:intergenic | 60.0% |
| ! | TCCTTATCGGTGCCTCCCCA+AGG | - | chr1.2:5016754-5016773 | MS.gene00497:CDS | 60.0% |
| !! | ACCTTGGGGAGGCACCGATA+AGG | + | chr1.2:5016758-5016777 | None:intergenic | 60.0% |
| !! | AGACATGTCGGTTCCGGCGA+CGG | - | chr1.2:5017202-5017221 | MS.gene00497:CDS | 60.0% |
| !! | GGCGAGAGACATGTCGGTTC+CGG | - | chr1.2:5017196-5017215 | MS.gene00497:CDS | 60.0% |
| !! | TCGGCACCGACCAATCAGCA+TGG | - | chr1.2:5016484-5016503 | MS.gene00497:CDS | 60.0% |
| ATGTACGTCGCCACCGTCGC+CGG | + | chr1.2:5017218-5017237 | None:intergenic | 65.0% | |
| CGCGGACATTGAGTGCGTCG+AGG | + | chr1.2:5016422-5016441 | None:intergenic | 65.0% | |
| CTCCCTGCTCGAATCCTCCG+TGG | + | chr1.2:5016950-5016969 | None:intergenic | 65.0% | |
| GAAGAGCTCAGGGCGGCGAA+TGG | + | chr1.2:5016724-5016743 | None:intergenic | 65.0% | |
| GCACGCGCTGCCATGCTGAT+TGG | + | chr1.2:5016497-5016516 | None:intergenic | 65.0% | |
| GTGCAGTGGCTGGACACGGA+GGG | - | chr1.2:5017266-5017285 | MS.gene00497:CDS | 65.0% | |
| TGACACTGCCGGCGCAAACG+AGG | + | chr1.2:5016560-5016579 | None:intergenic | 65.0% | |
| TGCAGTGGCTGGACACGGAG+GGG | - | chr1.2:5017267-5017286 | MS.gene00497:CDS | 65.0% | |
| TGTCGCCGGAGCCTTCTACG+CGG | + | chr1.2:5016440-5016459 | None:intergenic | 65.0% | |
| ! | GCGGGAAGAGTACGGTGCAG+TGG | - | chr1.2:5017252-5017271 | MS.gene00497:CDS | 65.0% |
| ACATCGGCCCCGACAGCCAG+TGG | + | chr1.2:5017035-5017054 | None:intergenic | 70.0% | |
| GGTGCAGTGGCTGGACACGG+AGG | - | chr1.2:5017265-5017284 | MS.gene00497:CDS | 70.0% | |
| !! | CATGTCGGTTCCGGCGACGG+TGG | - | chr1.2:5017205-5017224 | MS.gene00497:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 5016402 | 5017355 | 5016402 | ID=MS.gene00497 |
| chr1.2 | mRNA | 5016402 | 5017355 | 5016402 | ID=MS.gene00497.t1;Parent=MS.gene00497 |
| chr1.2 | exon | 5016982 | 5017355 | 5016982 | ID=MS.gene00497.t1.exon1;Parent=MS.gene00497.t1 |
| chr1.2 | CDS | 5016982 | 5017355 | 5016982 | ID=cds.MS.gene00497.t1;Parent=MS.gene00497.t1 |
| chr1.2 | exon | 5016402 | 5016834 | 5016402 | ID=MS.gene00497.t1.exon2;Parent=MS.gene00497.t1 |
| chr1.2 | CDS | 5016402 | 5016834 | 5016402 | ID=cds.MS.gene00497.t1;Parent=MS.gene00497.t1 |
| Gene Sequence |
| Protein sequence |
