Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29395.t1 | XP_013459502.1 | 97 | 269 | 8 | 0 | 1 | 269 | 1 | 269 | 9.70E-148 | 532.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29395.t1 | J9U5U9 | 39.6 | 260 | 156 | 1 | 6 | 265 | 3 | 261 | 7.7e-61 | 235.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29395.t1 | A0A072UWT8 | 97.0 | 269 | 8 | 0 | 1 | 269 | 1 | 269 | 7.0e-148 | 532.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054941 | MS.gene29395 | 0.811914 | 5.51E-51 | -1.69E-46 |
| MS.gene057717 | MS.gene29395 | 0.814099 | 1.83E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene00497 | MS.gene29395 | PPI |
| MS.gene011748 | MS.gene29395 | PPI |
| MS.gene24472 | MS.gene29395 | PPI |
| MS.gene29395 | MS.gene66455 | PPI |
| MS.gene29395 | MS.gene44503 | PPI |
| MS.gene29395 | MS.gene041911 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29395.t1 | MTR_3g045440 | 97.026 | 269 | 8 | 0 | 1 | 269 | 1 | 269 | 0.0 | 542 |
| MS.gene29395.t1 | MTR_6g086560 | 62.738 | 263 | 97 | 1 | 8 | 269 | 17 | 279 | 5.88e-124 | 354 |
| MS.gene29395.t1 | MTR_1g018320 | 38.462 | 260 | 158 | 2 | 7 | 265 | 5 | 263 | 8.61e-74 | 226 |
| MS.gene29395.t1 | MTR_4g095310 | 40.816 | 245 | 143 | 2 | 13 | 256 | 9 | 252 | 2.17e-70 | 218 |
| MS.gene29395.t1 | MTR_5g016150 | 38.776 | 245 | 148 | 2 | 13 | 256 | 9 | 252 | 1.75e-67 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29395.t1 | AT3G24420 | 50.185 | 271 | 132 | 2 | 1 | 268 | 1 | 271 | 2.41e-104 | 304 |
| MS.gene29395.t1 | AT3G03990 | 39.080 | 261 | 158 | 1 | 5 | 265 | 3 | 262 | 1.29e-75 | 231 |
| MS.gene29395.t1 | AT4G37470 | 42.041 | 245 | 140 | 2 | 13 | 256 | 9 | 252 | 6.03e-71 | 219 |
Find 55 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAAGCATAGGGCATTATT+TGG | 0.168365 | 3.3:-31732167 | MS.gene29395:CDS |
| AAATAATGCCCTATGCTTAT+TGG | 0.181198 | 3.3:+31732169 | None:intergenic |
| TATTTGGATGAGAACATTAA+AGG | 0.265555 | 3.3:-31732151 | MS.gene29395:CDS |
| TGACATAAAACTATTGTTTC+GGG | 0.281340 | 3.3:+31733455 | None:intergenic |
| ATGACATAAAACTATTGTTT+CGG | 0.322926 | 3.3:+31733454 | None:intergenic |
| TTGGAACAGACCAGTCTATA+TGG | 0.354404 | 3.3:-31733427 | MS.gene29395:CDS |
| TCAACAGAGTCAGCATCATT+TGG | 0.359346 | 3.3:+31732337 | None:intergenic |
| ACAGTCTAGTTCTGTTTGAT+TGG | 0.364702 | 3.3:-31733373 | MS.gene29395:CDS |
| TTTCAGTGACTATAGAGATA+TGG | 0.366286 | 3.3:-31732248 | MS.gene29395:CDS |
| TGATGAGTTAATCACTCTTA+TGG | 0.373825 | 3.3:-31733279 | MS.gene29395:CDS |
| TGAGGTGCTGAAGGGTATTG+TGG | 0.383521 | 3.3:-31732059 | MS.gene29395:CDS |
| GCTTTCGTATTGAGACTCTA+TGG | 0.399369 | 3.3:+31732393 | None:intergenic |
| ATTTGGATGAGAACATTAAA+GGG | 0.399918 | 3.3:-31732150 | MS.gene29395:CDS |
| TCTGTAATAGCTCCAGAAAA+TGG | 0.417553 | 3.3:+31733350 | None:intergenic |
| CATTAAAGGGGTGTCTACTT+TGG | 0.418244 | 3.3:-31732137 | MS.gene29395:CDS |
| TCATTTGGATCCACTGCAAT+AGG | 0.424577 | 3.3:+31732352 | None:intergenic |
| AAAAGCCTGAGCTCTTTAAG+AGG | 0.425563 | 3.3:-31733181 | MS.gene29395:CDS |
| TAGAGTCTCAATACGAAAGC+TGG | 0.436550 | 3.3:-31732390 | MS.gene29395:CDS |
| CTCATCAGCATAAGGTTCAT+AGG | 0.436848 | 3.3:+31733295 | None:intergenic |
| GAGGTGCTGAAGGGTATTGT+GGG | 0.441840 | 3.3:-31732058 | MS.gene29395:CDS |
| ATAAATACAGATGACTATAA+AGG | 0.458026 | 3.3:-31732454 | MS.gene29395:CDS |
| CTCAGTTAACTGCACACCTT+AGG | 0.466113 | 3.3:-31732087 | MS.gene29395:CDS |
| ACAATCCTCTTAAAGAGCTC+AGG | 0.466269 | 3.3:+31733176 | None:intergenic |
| TGTTTCGGGTCCTGAGCCTA+TGG | 0.470244 | 3.3:+31733469 | None:intergenic |
| CACTCTATGTCTGCTATGAT+AGG | 0.473029 | 3.3:-31733221 | MS.gene29395:CDS |
| CTATAGAGATATGGTTCAAA+AGG | 0.478564 | 3.3:-31732239 | MS.gene29395:CDS |
| TTCTTCTTTGTGCTTCCCCA+AGG | 0.483467 | 3.3:-31733154 | MS.gene29395:intron |
| GTGATTAACTCATCAGCATA+AGG | 0.495421 | 3.3:+31733287 | None:intergenic |
| AATCACTCTTATGGATGAGT+TGG | 0.497837 | 3.3:-31733270 | MS.gene29395:CDS |
| GTGCAGTTAACTGAGGGAAA+TGG | 0.509673 | 3.3:+31732095 | None:intergenic |
| TAGGTTGGTTGAGGTGCTGA+AGG | 0.511480 | 3.3:-31732068 | MS.gene29395:CDS |
| TGCACACCTTAGGTTGGTTG+AGG | 0.530851 | 3.3:-31732077 | MS.gene29395:CDS |
| TTGGAGTTTATAGACATGAC+TGG | 0.548171 | 3.3:-31732118 | MS.gene29395:CDS |
| AATGCAAGAACCATAGGCTC+AGG | 0.553052 | 3.3:-31733479 | MS.gene29395:CDS |
| GAAAGCTGGGTTTCAGCATA+CGG | 0.556562 | 3.3:-31732376 | MS.gene29395:CDS |
| TCTTTAAATGCAAGAACCAT+AGG | 0.556752 | 3.3:-31733485 | MS.gene29395:CDS |
| GTGGCAGTTCCAATAAGCAT+AGG | 0.560917 | 3.3:-31732178 | MS.gene29395:CDS |
| ACTTGACTGAATGATTGTGC+AGG | 0.563263 | 3.3:+31732207 | None:intergenic |
| AGCATACGGTCCTATTGCAG+TGG | 0.564652 | 3.3:-31732362 | MS.gene29395:CDS |
| TTGCATTTAAAGATGTTGAG+AGG | 0.576785 | 3.3:+31733495 | None:intergenic |
| AGAGTCTCAATACGAAAGCT+GGG | 0.578249 | 3.3:-31732389 | MS.gene29395:CDS |
| GTTAACTGCACACCTTAGGT+TGG | 0.578700 | 3.3:-31732083 | MS.gene29395:CDS |
| AGGTTGGTTGAGGTGCTGAA+GGG | 0.578957 | 3.3:-31732067 | MS.gene29395:CDS |
| TGGCAGTTCCAATAAGCATA+GGG | 0.586920 | 3.3:-31732177 | MS.gene29395:CDS |
| TCAGCACCTCAACCAACCTA+AGG | 0.594081 | 3.3:+31732071 | None:intergenic |
| TTTGGATGAGAACATTAAAG+GGG | 0.595928 | 3.3:-31732149 | MS.gene29395:CDS |
| CTTGACTGAATGATTGTGCA+GGG | 0.604202 | 3.3:+31732208 | None:intergenic |
| AATACAGATGACTATAAAGG+AGG | 0.635005 | 3.3:-31732451 | MS.gene29395:CDS |
| CATTCAGTCAAGTAATGATG+TGG | 0.635222 | 3.3:-31732197 | MS.gene29395:CDS |
| CTAAGGTGTGCAGTTAACTG+AGG | 0.643140 | 3.3:+31732088 | None:intergenic |
| TAAGGTGTGCAGTTAACTGA+GGG | 0.643687 | 3.3:+31732089 | None:intergenic |
| TGGTGAAGTTGCAATTACCT+TGG | 0.664064 | 3.3:-31732284 | MS.gene29395:CDS |
| AAATGCTTGAAAAGAATGAG+TGG | 0.685359 | 3.3:-31732304 | MS.gene29395:CDS |
| CAACAAAAGTGATACATGTG+AGG | 0.685678 | 3.3:+31733246 | None:intergenic |
| TTGACTGAATGATTGTGCAG+GGG | 0.705699 | 3.3:+31732209 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTATAAATGTTAAAAA+GGG | - | chr3.3:31732895-31732914 | MS.gene29395:intron | 10.0% |
| !!! | TAACTTTTTAATTATGTTAT+TGG | - | chr3.3:31732736-31732755 | MS.gene29395:intron | 10.0% |
| !! | CAAAACTATAAATGTTAAAA+AGG | - | chr3.3:31732894-31732913 | MS.gene29395:intron | 15.0% |
| !!! | TATATTTTGCATGATTATAA+AGG | + | chr3.3:31732251-31732270 | None:intergenic | 15.0% |
| !!! | TTTTAACATTTATAGTTTTG+TGG | + | chr3.3:31732894-31732913 | None:intergenic | 15.0% |
| !! | ACCTATGAATGAATAATTAT+GGG | + | chr3.3:31733093-31733112 | None:intergenic | 20.0% |
| !! | ATAAATACAGATGACTATAA+AGG | - | chr3.3:31733115-31733134 | MS.gene29395:intron | 20.0% |
| !! | ATGACATAAAACTATTGTTT+CGG | + | chr3.3:31732118-31732137 | None:intergenic | 20.0% |
| !! | CATTAGTTATTGACAAAAAT+TGG | + | chr3.3:31732775-31732794 | None:intergenic | 20.0% |
| !! | GTTAAAAACACTTGATTATT+TGG | - | chr3.3:31732534-31732553 | MS.gene29395:intron | 20.0% |
| !! | TACCTATGAATGAATAATTA+TGG | + | chr3.3:31733094-31733113 | None:intergenic | 20.0% |
| !!! | AAACAATAGTTTTATGTCAT+GGG | - | chr3.3:31732118-31732137 | MS.gene29395:CDS | 20.0% |
| !!! | AAATTTTACATCACACTAAT+TGG | + | chr3.3:31732941-31732960 | None:intergenic | 20.0% |
| ! | ATTTGGATGAGAACATTAAA+GGG | - | chr3.3:31733419-31733438 | MS.gene29395:CDS | 25.0% |
| ! | GAAATCTCATATTGTGTATT+TGG | - | chr3.3:31732558-31732577 | MS.gene29395:intron | 25.0% |
| ! | TAGTTATTGACAAAAATTGG+TGG | + | chr3.3:31732772-31732791 | None:intergenic | 25.0% |
| ! | TATTTGGATGAGAACATTAA+AGG | - | chr3.3:31733418-31733437 | MS.gene29395:CDS | 25.0% |
| ! | TCCCATAATTATTCATTCAT+AGG | - | chr3.3:31733089-31733108 | MS.gene29395:intron | 25.0% |
| ! | TGACATAAAACTATTGTTTC+GGG | + | chr3.3:31732117-31732136 | None:intergenic | 25.0% |
| !! | CAATTTTATTCCATATAGAC+TGG | + | chr3.3:31732155-31732174 | None:intergenic | 25.0% |
| !! | CTGTAATTTTCAGTTAAAAG+AGG | + | chr3.3:31732180-31732199 | None:intergenic | 25.0% |
| !! | TTTCAAATTTTTACCTGTGT+CGG | + | chr3.3:31732596-31732615 | None:intergenic | 25.0% |
| !!! | AACATTTATAGTTTTGTGGA+AGG | + | chr3.3:31732890-31732909 | None:intergenic | 25.0% |
| !!! | GAAACAATAGTTTTATGTCA+TGG | - | chr3.3:31732117-31732136 | MS.gene29395:CDS | 25.0% |
| AAATAATGCCCTATGCTTAT+TGG | + | chr3.3:31733403-31733422 | None:intergenic | 30.0% | |
| AAATGCTTGAAAAGAATGAG+TGG | - | chr3.3:31733265-31733284 | MS.gene29395:CDS | 30.0% | |
| AATACAGATGACTATAAAGG+AGG | - | chr3.3:31733118-31733137 | MS.gene29395:intron | 30.0% | |
| AGTCACTAACCATCTTAAAA+TGG | - | chr3.3:31732807-31732826 | MS.gene29395:intron | 30.0% | |
| CCAAAAATTGAGCTCAAATA+TGG | + | chr3.3:31732998-31733017 | None:intergenic | 30.0% | |
| CTATAGAGATATGGTTCAAA+AGG | - | chr3.3:31733330-31733349 | MS.gene29395:CDS | 30.0% | |
| GATGTTAATACAAGACACTA+TGG | + | chr3.3:31733071-31733090 | None:intergenic | 30.0% | |
| TCTTTAAATGCAAGAACCAT+AGG | - | chr3.3:31732084-31732103 | MS.gene29395:CDS | 30.0% | |
| TGATGAGTTAATCACTCTTA+TGG | - | chr3.3:31732290-31732309 | MS.gene29395:CDS | 30.0% | |
| TTGCATTTAAAGATGTTGAG+AGG | + | chr3.3:31732077-31732096 | None:intergenic | 30.0% | |
| TTTCAGTGACTATAGAGATA+TGG | - | chr3.3:31733321-31733340 | MS.gene29395:CDS | 30.0% | |
| TTTGGATGAGAACATTAAAG+GGG | - | chr3.3:31733420-31733439 | MS.gene29395:CDS | 30.0% | |
| ! | AATAAGCATAGGGCATTATT+TGG | - | chr3.3:31733402-31733421 | MS.gene29395:CDS | 30.0% |
| ! | CCATATTTGAGCTCAATTTT+TGG | - | chr3.3:31732995-31733014 | MS.gene29395:intron | 30.0% |
| ! | TTTTGTGGAAGGACAAAAAT+AGG | + | chr3.3:31732879-31732898 | None:intergenic | 30.0% |
| !!! | ATAGTTTTATGTCATGGGTT+TGG | - | chr3.3:31732123-31732142 | MS.gene29395:CDS | 30.0% |
| !!! | GTTTTTCAAGAGCTCAAATT+TGG | + | chr3.3:31732976-31732995 | None:intergenic | 30.0% |
| AATCACTCTTATGGATGAGT+TGG | - | chr3.3:31732299-31732318 | MS.gene29395:CDS | 35.0% | |
| CAACAAAAGTGATACATGTG+AGG | + | chr3.3:31732326-31732345 | None:intergenic | 35.0% | |
| CATTCAGTCAAGTAATGATG+TGG | - | chr3.3:31733372-31733391 | MS.gene29395:CDS | 35.0% | |
| GTGATTAACTCATCAGCATA+AGG | + | chr3.3:31732285-31732304 | None:intergenic | 35.0% | |
| TAGGTACACTTCTTTATGTG+TGG | + | chr3.3:31732860-31732879 | None:intergenic | 35.0% | |
| TCTGTAATAGCTCCAGAAAA+TGG | + | chr3.3:31732222-31732241 | None:intergenic | 35.0% | |
| TGGTTAGTGCAATCCAAATT+TGG | + | chr3.3:31733051-31733070 | None:intergenic | 35.0% | |
| TTGGAAGTGATTTATCGAGT+TGG | + | chr3.3:31732922-31732941 | None:intergenic | 35.0% | |
| TTGGAGTTTATAGACATGAC+TGG | - | chr3.3:31733451-31733470 | MS.gene29395:CDS | 35.0% | |
| ! | AAAGAGCTCAGGCTTTTTAA+TGG | + | chr3.3:31732385-31732404 | None:intergenic | 35.0% |
| ! | ACATCAGAGAGAGTATATCT+AGG | + | chr3.3:31732455-31732474 | None:intergenic | 35.0% |
| ! | GATAGAAAAGCATAGTTGTG+AGG | + | chr3.3:31732838-31732857 | None:intergenic | 35.0% |
| ! | GTCACTGAAAAACACAGTTT+TGG | + | chr3.3:31733311-31733330 | None:intergenic | 35.0% |
| !! | ACAGTCTAGTTCTGTTTGAT+TGG | - | chr3.3:31732196-31732215 | MS.gene29395:CDS | 35.0% |
| !! | CTCACATGTATCACTTTTGT+TGG | - | chr3.3:31732324-31732343 | MS.gene29395:CDS | 35.0% |
| AAAAGCCTGAGCTCTTTAAG+AGG | - | chr3.3:31732388-31732407 | MS.gene29395:CDS | 40.0% | |
| ACAATCCTCTTAAAGAGCTC+AGG | + | chr3.3:31732396-31732415 | None:intergenic | 40.0% | |
| ACTTGACTGAATGATTGTGC+AGG | + | chr3.3:31733365-31733384 | None:intergenic | 40.0% | |
| AGAGTCTCAATACGAAAGCT+GGG | - | chr3.3:31733180-31733199 | MS.gene29395:CDS | 40.0% | |
| AGTCCACTCCAAATTTGGTT+GGG | + | chr3.3:31733026-31733045 | None:intergenic | 40.0% | |
| ATACCCAACCAAATTTGGAG+TGG | - | chr3.3:31733020-31733039 | MS.gene29395:intron | 40.0% | |
| CACTCTATGTCTGCTATGAT+AGG | - | chr3.3:31732348-31732367 | MS.gene29395:CDS | 40.0% | |
| CTCATCAGCATAAGGTTCAT+AGG | + | chr3.3:31732277-31732296 | None:intergenic | 40.0% | |
| CTTGACTGAATGATTGTGCA+GGG | + | chr3.3:31733364-31733383 | None:intergenic | 40.0% | |
| GCTTTCGTATTGAGACTCTA+TGG | + | chr3.3:31733179-31733198 | None:intergenic | 40.0% | |
| TAAGGTGTGCAGTTAACTGA+GGG | + | chr3.3:31733483-31733502 | None:intergenic | 40.0% | |
| TAGAGTCTCAATACGAAAGC+TGG | - | chr3.3:31733179-31733198 | MS.gene29395:CDS | 40.0% | |
| TAGTCCACTCCAAATTTGGT+TGG | + | chr3.3:31733027-31733046 | None:intergenic | 40.0% | |
| TCAACAGAGTCAGCATCATT+TGG | + | chr3.3:31733235-31733254 | None:intergenic | 40.0% | |
| TCATTTGGATCCACTGCAAT+AGG | + | chr3.3:31733220-31733239 | None:intergenic | 40.0% | |
| TGGACATACCCAACCAAATT+TGG | - | chr3.3:31733015-31733034 | MS.gene29395:intron | 40.0% | |
| TGGCAGTTCCAATAAGCATA+GGG | - | chr3.3:31733392-31733411 | MS.gene29395:CDS | 40.0% | |
| TGGTGAAGTTGCAATTACCT+TGG | - | chr3.3:31733285-31733304 | MS.gene29395:CDS | 40.0% | |
| TTGACTGAATGATTGTGCAG+GGG | + | chr3.3:31733363-31733382 | None:intergenic | 40.0% | |
| TTGGAACAGACCAGTCTATA+TGG | - | chr3.3:31732142-31732161 | MS.gene29395:CDS | 40.0% | |
| ! | TGGTTAGTCCACTCCAAATT+TGG | + | chr3.3:31733031-31733050 | None:intergenic | 40.0% |
| !! | AGGTAAAGATGAGAGTACCT+TGG | + | chr3.3:31732435-31732454 | None:intergenic | 40.0% |
| !! | CATTAAAGGGGTGTCTACTT+TGG | - | chr3.3:31733432-31733451 | MS.gene29395:CDS | 40.0% |
| !! | CTGTTTGATTGGCCATTTTC+TGG | - | chr3.3:31732207-31732226 | MS.gene29395:CDS | 40.0% |
| !! | GAAAAACACAGTTTTGGCCA+AGG | + | chr3.3:31733305-31733324 | None:intergenic | 40.0% |
| !! | GAGGAGAGACCATTTTAAGA+TGG | + | chr3.3:31732819-31732838 | None:intergenic | 40.0% |
| !! | GGTAAAGATGAGAGTACCTT+GGG | + | chr3.3:31732434-31732453 | None:intergenic | 40.0% |
| !! | GTAAAGATGAGAGTACCTTG+GGG | + | chr3.3:31732433-31732452 | None:intergenic | 40.0% |
| !! | GTGTCGGTGCTACAAAAATT+TGG | - | chr3.3:31732688-31732707 | MS.gene29395:intron | 40.0% |
| !! | TGGAGTGGACTAACCAAATT+TGG | - | chr3.3:31733035-31733054 | MS.gene29395:intron | 40.0% |
| !!! | GATGTTGAGAGGCTCTTTTT+TGG | + | chr3.3:31732066-31732085 | None:intergenic | 40.0% |
| AATGCAAGAACCATAGGCTC+AGG | - | chr3.3:31732090-31732109 | MS.gene29395:CDS | 45.0% | |
| CATGTATCATCGACACGTGT+CGG | - | chr3.3:31732640-31732659 | MS.gene29395:intron | 45.0% | |
| CTAAGGTGTGCAGTTAACTG+AGG | + | chr3.3:31733484-31733503 | None:intergenic | 45.0% | |
| CTCAGTTAACTGCACACCTT+AGG | - | chr3.3:31733482-31733501 | MS.gene29395:CDS | 45.0% | |
| GAAAGCTGGGTTTCAGCATA+CGG | - | chr3.3:31733193-31733212 | MS.gene29395:CDS | 45.0% | |
| GTGCAGTTAACTGAGGGAAA+TGG | + | chr3.3:31733477-31733496 | None:intergenic | 45.0% | |
| GTGGCAGTTCCAATAAGCAT+AGG | - | chr3.3:31733391-31733410 | MS.gene29395:CDS | 45.0% | |
| GTTAACTGCACACCTTAGGT+TGG | - | chr3.3:31733486-31733505 | MS.gene29395:CDS | 45.0% | |
| TTCTTCTTTGTGCTTCCCCA+AGG | - | chr3.3:31732415-31732434 | MS.gene29395:CDS | 45.0% | |
| ! | ACGCTTTCCATCAGAAGTGT+CGG | - | chr3.3:31732672-31732691 | MS.gene29395:intron | 45.0% |
| ! | GAGCTCAGGCTTTTTAATGG+AGG | + | chr3.3:31732382-31732401 | None:intergenic | 45.0% |
| AGCATACGGTCCTATTGCAG+TGG | - | chr3.3:31733207-31733226 | MS.gene29395:CDS | 50.0% | |
| TCAGCACCTCAACCAACCTA+AGG | + | chr3.3:31733501-31733520 | None:intergenic | 50.0% | |
| ! | CTTCTGATGGAAAGCGTGTC+TGG | + | chr3.3:31732669-31732688 | None:intergenic | 50.0% |
| !! | AGGTTGGTTGAGGTGCTGAA+GGG | - | chr3.3:31733502-31733521 | MS.gene29395:CDS | 50.0% |
| !! | GAGGTGCTGAAGGGTATTGT+GGG | - | chr3.3:31733511-31733530 | MS.gene29395:CDS | 50.0% |
| !! | GATCTCTGAAACACCGACAC+AGG | - | chr3.3:31732580-31732599 | MS.gene29395:intron | 50.0% |
| !! | TAGGTTGGTTGAGGTGCTGA+AGG | - | chr3.3:31733501-31733520 | MS.gene29395:CDS | 50.0% |
| !! | TGAGGTGCTGAAGGGTATTG+TGG | - | chr3.3:31733510-31733529 | MS.gene29395:CDS | 50.0% |
| !! | TGCACACCTTAGGTTGGTTG+AGG | - | chr3.3:31733492-31733511 | MS.gene29395:CDS | 50.0% |
| !! | TGTAGCACCGACACTTCTGA+TGG | + | chr3.3:31732682-31732701 | None:intergenic | 50.0% |
| ! | TGTTTCGGGTCCTGAGCCTA+TGG | + | chr3.3:31732103-31732122 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 31732054 | 31733537 | 31732054 | ID=MS.gene29395 |
| chr3.3 | mRNA | 31732054 | 31733537 | 31732054 | ID=MS.gene29395.t1;Parent=MS.gene29395 |
| chr3.3 | exon | 31733155 | 31733537 | 31733155 | ID=MS.gene29395.t1.exon1;Parent=MS.gene29395.t1 |
| chr3.3 | CDS | 31733155 | 31733537 | 31733155 | ID=cds.MS.gene29395.t1;Parent=MS.gene29395.t1 |
| chr3.3 | exon | 31732054 | 31732480 | 31732054 | ID=MS.gene29395.t1.exon2;Parent=MS.gene29395.t1 |
| chr3.3 | CDS | 31732054 | 31732480 | 31732054 | ID=cds.MS.gene29395.t1;Parent=MS.gene29395.t1 |
| Gene Sequence |
| Protein sequence |
