Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006357.t1 | XP_003592350.1 | 97.9 | 334 | 6 | 1 | 2 | 335 | 8 | 340 | 8.00E-184 | 652.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006357.t1 | Q9FLH8 | 78.8 | 316 | 67 | 0 | 14 | 329 | 19 | 334 | 2.6e-143 | 509.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006357.t1 | G7IC32 | 97.9 | 334 | 6 | 1 | 2 | 335 | 8 | 340 | 5.8e-184 | 652.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032177 | MS.gene006357 | PPI |
| MS.gene006357 | MS.gene46881 | PPI |
| MS.gene056386 | MS.gene006357 | PPI |
| MS.gene006357 | MS.gene003877 | PPI |
| MS.gene006357 | MS.gene28335 | PPI |
| MS.gene85276 | MS.gene006357 | PPI |
| MS.gene006357 | MS.gene98726 | PPI |
| MS.gene006357 | MS.gene052011 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006357.t1 | MTR_1g101950 | 97.904 | 334 | 6 | 1 | 2 | 335 | 8 | 340 | 0.0 | 660 |
| MS.gene006357.t1 | MTR_6g089480 | 88.312 | 308 | 36 | 0 | 25 | 332 | 1 | 308 | 0.0 | 566 |
| MS.gene006357.t1 | MTR_6g089480 | 88.235 | 272 | 32 | 0 | 25 | 296 | 1 | 272 | 7.62e-180 | 498 |
| MS.gene006357.t1 | MTR_6g089480 | 88.889 | 270 | 30 | 0 | 25 | 294 | 1 | 270 | 1.12e-179 | 498 |
| MS.gene006357.t1 | MTR_5g079460 | 74.233 | 326 | 82 | 2 | 7 | 331 | 55 | 379 | 1.60e-170 | 479 |
| MS.gene006357.t1 | MTR_1g069490 | 71.601 | 331 | 68 | 2 | 5 | 335 | 97 | 401 | 5.11e-160 | 453 |
| MS.gene006357.t1 | MTR_1g069745 | 75.000 | 296 | 62 | 2 | 39 | 334 | 4 | 287 | 5.05e-156 | 439 |
| MS.gene006357.t1 | MTR_2g098950 | 64.000 | 325 | 115 | 1 | 8 | 332 | 4 | 326 | 3.48e-150 | 426 |
| MS.gene006357.t1 | MTR_4g067310 | 66.246 | 317 | 105 | 1 | 16 | 332 | 13 | 327 | 5.98e-150 | 425 |
| MS.gene006357.t1 | MTR_1g076850 | 63.175 | 315 | 114 | 2 | 18 | 332 | 8 | 320 | 2.16e-148 | 421 |
| MS.gene006357.t1 | MTR_1g057810 | 68.693 | 329 | 97 | 3 | 3 | 331 | 238 | 560 | 7.82e-147 | 426 |
| MS.gene006357.t1 | MTR_7g075860 | 63.291 | 316 | 114 | 1 | 18 | 331 | 41 | 356 | 1.45e-143 | 410 |
| MS.gene006357.t1 | MTR_1g105150 | 64.742 | 329 | 96 | 4 | 3 | 331 | 238 | 546 | 3.05e-132 | 388 |
| MS.gene006357.t1 | MTR_1g054730 | 54.242 | 330 | 112 | 5 | 6 | 335 | 100 | 390 | 1.65e-104 | 311 |
| MS.gene006357.t1 | MTR_0046s0180 | 77.143 | 105 | 24 | 0 | 228 | 332 | 5 | 109 | 2.11e-53 | 171 |
| MS.gene006357.t1 | MTR_5g044990 | 30.233 | 344 | 203 | 5 | 18 | 327 | 210 | 550 | 1.70e-49 | 174 |
| MS.gene006357.t1 | MTR_4g019165 | 31.461 | 356 | 199 | 6 | 18 | 328 | 93 | 448 | 1.23e-46 | 164 |
| MS.gene006357.t1 | MTR_0046s0210 | 53.623 | 69 | 25 | 2 | 5 | 72 | 91 | 153 | 7.93e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006357.t1 | AT5G51830 | 78.056 | 319 | 70 | 0 | 11 | 329 | 16 | 334 | 0.0 | 521 |
| MS.gene006357.t1 | AT5G51830 | 78.056 | 319 | 70 | 0 | 11 | 329 | 16 | 334 | 0.0 | 521 |
| MS.gene006357.t1 | AT1G66430 | 73.502 | 317 | 83 | 1 | 13 | 329 | 60 | 375 | 8.12e-172 | 483 |
| MS.gene006357.t1 | AT2G31390 | 64.396 | 323 | 113 | 2 | 13 | 335 | 4 | 324 | 1.91e-148 | 421 |
| MS.gene006357.t1 | AT1G06030 | 63.636 | 319 | 114 | 2 | 14 | 332 | 7 | 323 | 7.70e-147 | 417 |
| MS.gene006357.t1 | AT4G10260 | 65.260 | 308 | 105 | 2 | 18 | 325 | 6 | 311 | 7.16e-146 | 414 |
| MS.gene006357.t1 | AT3G59480 | 63.354 | 322 | 112 | 3 | 8 | 329 | 4 | 319 | 8.48e-146 | 414 |
| MS.gene006357.t1 | AT1G06020 | 62.975 | 316 | 115 | 1 | 17 | 332 | 9 | 322 | 2.10e-144 | 411 |
| MS.gene006357.t1 | AT3G54090 | 33.333 | 357 | 192 | 8 | 18 | 329 | 103 | 458 | 1.20e-52 | 180 |
| MS.gene006357.t1 | AT1G50390 | 50.000 | 170 | 54 | 1 | 163 | 332 | 1 | 139 | 7.49e-48 | 158 |
| MS.gene006357.t1 | AT1G69200 | 31.402 | 328 | 191 | 7 | 18 | 312 | 206 | 532 | 1.38e-47 | 169 |
Find 74 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCGAAATATAGCGCTTTC+TGG | 0.164655 | 1.1:+73294785 | None:intergenic |
| CAATTAGAAGTTTGAGATTA+GGG | 0.257397 | 1.1:+73295337 | None:intergenic |
| CAGGCTAAAATATTCCATTA+TGG | 0.292003 | 1.1:-73295737 | MS.gene006357:CDS |
| TAGGTTGGATCAGATGAATT+TGG | 0.297120 | 1.1:-73296039 | MS.gene006357:CDS |
| AACAAAAGCCAATGCGGTTC+TGG | 0.313707 | 1.1:+73295948 | None:intergenic |
| TCCTAGTGCTGATATGCTTC+TGG | 0.318385 | 1.1:-73295881 | MS.gene006357:CDS |
| CGAATTTGAGATTGGCACTA+TGG | 0.327098 | 1.1:-73295622 | MS.gene006357:CDS |
| AGGTTGGATCAGATGAATTT+GGG | 0.335559 | 1.1:-73296038 | MS.gene006357:CDS |
| ACAATTAGAAGTTTGAGATT+AGG | 0.347106 | 1.1:+73295336 | None:intergenic |
| CAAAATAATGTTGATACATC+TGG | 0.351909 | 1.1:-73295991 | MS.gene006357:CDS |
| GCAGTTGGCATCTCTAGGTT+GGG | 0.352397 | 1.1:-73296697 | MS.gene006357:CDS |
| AGTGGACTGGTTGTTTGTTT+TGG | 0.362156 | 1.1:-73296817 | MS.gene006357:CDS |
| GCATATCAGCACTAGGATTT+CGG | 0.363456 | 1.1:+73295887 | None:intergenic |
| TCAAACTGATGGAACCATAA+TGG | 0.399197 | 1.1:+73295723 | None:intergenic |
| GGCAGTTGGCATCTCTAGGT+TGG | 0.406307 | 1.1:-73296698 | MS.gene006357:CDS |
| ATGCCAACTGCCACGTTAGC+GGG | 0.409326 | 1.1:+73296709 | None:intergenic |
| CATAGTGCCAATCTCAAATT+CGG | 0.415637 | 1.1:+73295623 | None:intergenic |
| GGACTGGTATAATGAGCATA+TGG | 0.418638 | 1.1:-73295580 | MS.gene006357:CDS |
| CAGTTGGCATCTCTAGGTTG+GGG | 0.424281 | 1.1:-73296696 | MS.gene006357:CDS |
| CCAGCACCAGTTGTGTCAAC+AGG | 0.432600 | 1.1:+73294969 | None:intergenic |
| TCGTTGTACTCTCCGTTTGT+GGG | 0.433338 | 1.1:+73296844 | None:intergenic |
| TGAATTACCTCGAAAATACT+TGG | 0.438736 | 1.1:+73294903 | None:intergenic |
| GTATGATCCGAATTTGAGAT+TGG | 0.448557 | 1.1:-73295630 | MS.gene006357:CDS |
| TTCGTTGTACTCTCCGTTTG+TGG | 0.456495 | 1.1:+73296843 | None:intergenic |
| CTGGAGATGCATTTGTTAGT+GGG | 0.456951 | 1.1:-73294950 | MS.gene006357:CDS |
| TTTCTTGAAAGCAGGTGCTT+CGG | 0.458667 | 1.1:+73296747 | None:intergenic |
| CCTGTTGACACAACTGGTGC+TGG | 0.471362 | 1.1:-73294969 | MS.gene006357:CDS |
| GGATCTAGCCGATGTCATAA+AGG | 0.488434 | 1.1:-73295558 | MS.gene006357:intron |
| GGCCATCAGCTGAGGCTGCT+CGG | 0.491094 | 1.1:-73295601 | MS.gene006357:CDS |
| AAACTTCTAATTGTTACTGA+AGG | 0.493747 | 1.1:-73295327 | MS.gene006357:CDS |
| TCAGCTGAGGCTGCTCGGAC+TGG | 0.496871 | 1.1:-73295596 | MS.gene006357:CDS |
| GCTGGAGATGCATTTGTTAG+TGG | 0.500302 | 1.1:-73294951 | MS.gene006357:CDS |
| GTCCGAGCAGCCTCAGCTGA+TGG | 0.500567 | 1.1:+73295599 | None:intergenic |
| GTTAAACCTGTTGACACAAC+TGG | 0.501040 | 1.1:-73294975 | MS.gene006357:CDS |
| AATACAACATCATCATCATA+AGG | 0.505738 | 1.1:+73295375 | None:intergenic |
| AAAATTTACCTTTATGACAT+CGG | 0.508019 | 1.1:+73295550 | None:intergenic |
| CCAGGAGCTTTCTTGAAAGC+AGG | 0.513992 | 1.1:+73296739 | None:intergenic |
| TTCTGATGCCAGAACCGCAT+TGG | 0.514230 | 1.1:-73295956 | MS.gene006357:CDS |
| TGACCATAACCTCATTGAAA+AGG | 0.517218 | 1.1:-73295845 | MS.gene006357:intron |
| GCAAGATGAGCTGACTTGCA+TGG | 0.522605 | 1.1:+73295692 | None:intergenic |
| TTTGTTACACTTAGAGCTGA+TGG | 0.528198 | 1.1:-73295931 | MS.gene006357:CDS |
| CCTGCTTTCAAGAAAGCTCC+TGG | 0.530029 | 1.1:-73296739 | MS.gene006357:CDS |
| AGTTGGCATCTCTAGGTTGG+GGG | 0.540601 | 1.1:-73296695 | MS.gene006357:CDS |
| GACTGGTATAATGAGCATAT+GGG | 0.540901 | 1.1:-73295579 | MS.gene006357:CDS |
| TTCATCTGCATTTCTAGGCA+AGG | 0.544541 | 1.1:-73296671 | MS.gene006357:intron |
| TGGCTCATCAATCAAACTGA+TGG | 0.547967 | 1.1:+73295712 | None:intergenic |
| CTATATTTCGCAAATGTATG+TGG | 0.554913 | 1.1:-73294775 | MS.gene006357:CDS |
| ACGTTAGCGGGAGCACCACC+AGG | 0.555033 | 1.1:+73296721 | None:intergenic |
| GCGATCACCGTGACAAAGAG+AGG | 0.555962 | 1.1:-73294751 | MS.gene006357:CDS |
| ACGTGGCAGTTGGCATCTCT+AGG | 0.559314 | 1.1:-73296702 | MS.gene006357:CDS |
| AACTTCTAATTGTTACTGAA+GGG | 0.559879 | 1.1:-73295326 | MS.gene006357:CDS |
| GCTCCCGCTAACGTGGCAGT+TGG | 0.563123 | 1.1:-73296712 | MS.gene006357:CDS |
| TTTATTGCAGATCAGTGAAG+AGG | 0.565517 | 1.1:-73295427 | MS.gene006357:intron |
| TACCTCGAAAATACTTGGGT+CGG | 0.566049 | 1.1:+73294908 | None:intergenic |
| AATTGCCCCTCTCTTTGTCA+CGG | 0.568256 | 1.1:+73294744 | None:intergenic |
| AAATCTGATGATCCCACAAA+CGG | 0.569926 | 1.1:-73296856 | MS.gene006357:CDS |
| TGGTGGTGCTCCCGCTAACG+TGG | 0.574825 | 1.1:-73296719 | MS.gene006357:CDS |
| AGATGAATTTGGGTATATGT+TGG | 0.576116 | 1.1:-73296028 | MS.gene006357:CDS |
| GATGCCAACTGCCACGTTAG+CGG | 0.581644 | 1.1:+73296708 | None:intergenic |
| AATTGTTACTGAAGGGTCAG+AGG | 0.586261 | 1.1:-73295319 | MS.gene006357:CDS |
| ATTGTTACTGAAGGGTCAGA+GGG | 0.587459 | 1.1:-73295318 | MS.gene006357:CDS |
| GGCACTATGGCCATCAGCTG+AGG | 0.597442 | 1.1:-73295609 | MS.gene006357:CDS |
| CGATCACCGTGACAAAGAGA+GGG | 0.601737 | 1.1:-73294750 | MS.gene006357:CDS |
| AGAGTCTTTAGCAATTCTCA+AGG | 0.603061 | 1.1:+73295667 | None:intergenic |
| GAATTACCTCGAAAATACTT+GGG | 0.606713 | 1.1:+73294904 | None:intergenic |
| GTACAACGAAACAAGTGGAC+TGG | 0.613455 | 1.1:-73296830 | MS.gene006357:CDS |
| GGAGAGTACAACGAAACAAG+TGG | 0.626054 | 1.1:-73296835 | MS.gene006357:CDS |
| TCCAGAAGCATATCAGCACT+AGG | 0.651647 | 1.1:+73295880 | None:intergenic |
| AGAGACACTCCACCCACTGT+AGG | 0.656519 | 1.1:+73296772 | None:intergenic |
| GTTGGCATCTCTAGGTTGGG+GGG | 0.661012 | 1.1:-73296694 | MS.gene006357:CDS |
| ATGTTGATACATCTGGCATG+CGG | 0.677431 | 1.1:-73295984 | MS.gene006357:CDS |
| GCTTTCAAGAAAGCTCCTGG+TGG | 0.692356 | 1.1:-73296736 | MS.gene006357:CDS |
| AAGTGTAACAAAAGCCAATG+CGG | 0.715154 | 1.1:+73295942 | None:intergenic |
| GATCACCGTGACAAAGAGAG+GGG | 0.726400 | 1.1:-73294749 | MS.gene006357:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAAAGTTTAATAAAA+GGG | - | chr1.1:73294935-73294954 | MS.gene006357:CDS | 10.0% |
| !! | GAAAGATAAAGTTTAATAAA+AGG | - | chr1.1:73294934-73294953 | MS.gene006357:CDS | 15.0% |
| !! | TAATTCAACAATAAAAAAAG+AGG | + | chr1.1:73295901-73295920 | None:intergenic | 15.0% |
| !! | TATATCTATGTCTATTTATT+AGG | - | chr1.1:73295502-73295521 | MS.gene006357:intron | 15.0% |
| !!! | CTTATTTTATTTTTTTGGTA+TGG | + | chr1.1:73294836-73294855 | None:intergenic | 15.0% |
| !!! | TTCTTTTATTTCATACTAAT+TGG | - | chr1.1:73295157-73295176 | MS.gene006357:intron | 15.0% |
| !! | AAAATTTACCTTTATGACAT+CGG | + | chr1.1:73296601-73296620 | None:intergenic | 20.0% |
| !! | AAATCTGAGTTAAATAACTT+TGG | + | chr1.1:73296884-73296903 | None:intergenic | 20.0% |
| !! | AATAAAAGAATCATTTCACA+TGG | + | chr1.1:73295147-73295166 | None:intergenic | 20.0% |
| !! | ATAAAAGAATCATTTCACAT+GGG | + | chr1.1:73295146-73295165 | None:intergenic | 20.0% |
| !! | ATATTTGAACAAATCAAACA+TGG | + | chr1.1:73295556-73295575 | None:intergenic | 20.0% |
| !! | CTTCTAATATTGAATAAGTT+AGG | - | chr1.1:73294749-73294768 | MS.gene006357:CDS | 20.0% |
| !! | TGTATTCTTGCTAAATAATT+TGG | - | chr1.1:73294810-73294829 | MS.gene006357:intron | 20.0% |
| !!! | CTGAATGATTGTTTTAAAAA+AGG | - | chr1.1:73295638-73295657 | MS.gene006357:CDS | 20.0% |
| ! | AAACTTCTAATTGTTACTGA+AGG | - | chr1.1:73296821-73296840 | MS.gene006357:CDS | 25.0% |
| ! | AAAGATATTCCTCAAAATGA+AGG | + | chr1.1:73295784-73295803 | None:intergenic | 25.0% |
| ! | AACTTCTAATTGTTACTGAA+GGG | - | chr1.1:73296822-73296841 | MS.gene006357:CDS | 25.0% |
| ! | AATACAACATCATCATCATA+AGG | + | chr1.1:73296776-73296795 | None:intergenic | 25.0% |
| ! | AATGAATTTAGTTGTGATCT+AGG | - | chr1.1:73294985-73295004 | MS.gene006357:CDS | 25.0% |
| ! | AGAAAAAAGTTATGAACGTT+CGG | - | chr1.1:73297298-73297317 | MS.gene006357:intron | 25.0% |
| ! | ATCTATGTCTATTTATTAGG+TGG | - | chr1.1:73295505-73295524 | MS.gene006357:intron | 25.0% |
| ! | ATTATACAGACTTAAACCAA+AGG | + | chr1.1:73296373-73296392 | None:intergenic | 25.0% |
| ! | ATTTCATACTAATTGGCATA+AGG | - | chr1.1:73295164-73295183 | MS.gene006357:intron | 25.0% |
| ! | CAAAATAATGTTGATACATC+TGG | - | chr1.1:73296157-73296176 | MS.gene006357:intron | 25.0% |
| ! | CAAAGAAAATAATGCAATGA+GGG | + | chr1.1:73296932-73296951 | None:intergenic | 25.0% |
| ! | CAATACAGATTTCTTAACTA+TGG | + | chr1.1:73295579-73295598 | None:intergenic | 25.0% |
| ! | CTGTATTGTTATAGACTTAT+AGG | - | chr1.1:73295591-73295610 | MS.gene006357:CDS | 25.0% |
| ! | TAAGAAAATAACACTTCAGA+TGG | + | chr1.1:73296701-73296720 | None:intergenic | 25.0% |
| ! | TACAAGTACATGATATTTCT+AGG | + | chr1.1:73295943-73295962 | None:intergenic | 25.0% |
| ! | TACATGTACTTTATGAAGTT+TGG | - | chr1.1:73295093-73295112 | MS.gene006357:intron | 25.0% |
| ! | TTAGGAATATGAATCAATGT+TGG | - | chr1.1:73296047-73296066 | MS.gene006357:intron | 25.0% |
| ! | TTAGGAATATGAATCTATGT+TGG | - | chr1.1:73296007-73296026 | MS.gene006357:CDS | 25.0% |
| !! | ACAATTAGAAGTTTGAGATT+AGG | + | chr1.1:73296815-73296834 | None:intergenic | 25.0% |
| !! | CAATTAGAAGTTTGAGATTA+GGG | + | chr1.1:73296814-73296833 | None:intergenic | 25.0% |
| !! | GAAAAAAGAATGACTTGTAA+TGG | + | chr1.1:73296667-73296686 | None:intergenic | 25.0% |
| !!! | TTATTTTATGTTGCAGAATG+AGG | - | chr1.1:73297333-73297352 | MS.gene006357:intron | 25.0% |
| !!! | TTTTAACTTAAACTGATTGC+AGG | - | chr1.1:73296392-73296411 | MS.gene006357:intron | 25.0% |
| AAAGAGGAAAAAAGTAGAAC+AGG | + | chr1.1:73295885-73295904 | None:intergenic | 30.0% | |
| AAGAGGAAAAAAGTAGAACA+GGG | + | chr1.1:73295884-73295903 | None:intergenic | 30.0% | |
| AATCGGATTTATAGTTGGTT+AGG | + | chr1.1:73295857-73295876 | None:intergenic | 30.0% | |
| AATTCCCTAAAAAATGAGCT+TGG | - | chr1.1:73295727-73295746 | MS.gene006357:CDS | 30.0% | |
| ACTTAAACCAAAGGTCTTTA+TGG | + | chr1.1:73296364-73296383 | None:intergenic | 30.0% | |
| ACTTTATGAAGTTTGGCTAT+TGG | - | chr1.1:73295100-73295119 | MS.gene006357:intron | 30.0% | |
| AGATGAATTTGGGTATATGT+TGG | - | chr1.1:73296120-73296139 | MS.gene006357:intron | 30.0% | |
| ATTCCCTAAAAAATGAGCTT+GGG | - | chr1.1:73295728-73295747 | MS.gene006357:CDS | 30.0% | |
| CAGGCTAAAATATTCCATTA+TGG | - | chr1.1:73296411-73296430 | MS.gene006357:intron | 30.0% | |
| CCATCTCTGTTTATAAAATG+TGG | - | chr1.1:73296338-73296357 | MS.gene006357:intron | 30.0% | |
| CTATATTTCGCAAATGTATG+TGG | - | chr1.1:73297373-73297392 | MS.gene006357:intron | 30.0% | |
| GAATGTAACATTGTCATGTT+TGG | - | chr1.1:73295750-73295769 | MS.gene006357:intron | 30.0% | |
| GAATTACCTCGAAAATACTT+GGG | + | chr1.1:73297247-73297266 | None:intergenic | 30.0% | |
| GCAAAGAAAATAATGCAATG+AGG | + | chr1.1:73296933-73296952 | None:intergenic | 30.0% | |
| TAAACAGAGATGGAAATTCA+AGG | + | chr1.1:73296331-73296350 | None:intergenic | 30.0% | |
| TGAATTACCTCGAAAATACT+TGG | + | chr1.1:73297248-73297267 | None:intergenic | 30.0% | |
| TTGAACAAATCAAACATGGA+AGG | + | chr1.1:73295552-73295571 | None:intergenic | 30.0% | |
| ! | AATTTGTGTGCAGGATTTTA+AGG | - | chr1.1:73297130-73297149 | MS.gene006357:intron | 30.0% |
| ! | ATATGTTAAGCTTGCTTGTT+AGG | - | chr1.1:73294894-73294913 | MS.gene006357:intron | 30.0% |
| ! | ATTTGTGTGCAGGATTTTAA+GGG | - | chr1.1:73297131-73297150 | MS.gene006357:intron | 30.0% |
| ! | CCACATTTTATAAACAGAGA+TGG | + | chr1.1:73296341-73296360 | None:intergenic | 30.0% |
| ! | GCTGAGAAATTCTGAATTTT+AGG | - | chr1.1:73296029-73296048 | MS.gene006357:CDS | 30.0% |
| ! | GTAGCAGTATACTCAATTTT+AGG | - | chr1.1:73295989-73296008 | MS.gene006357:CDS | 30.0% |
| ! | GTTAAAGTTCCTTCATTTTG+AGG | - | chr1.1:73295772-73295791 | MS.gene006357:intron | 30.0% |
| ! | TCGTCTATTTTCTATTCTCA+TGG | - | chr1.1:73295812-73295831 | MS.gene006357:intron | 30.0% |
| ! | TGTGGGTTAAGAAAATTTAC+TGG | + | chr1.1:73295255-73295274 | None:intergenic | 30.0% |
| !! | CTACAAGAAGTATTATTCCT+AGG | + | chr1.1:73295973-73295992 | None:intergenic | 30.0% |
| !!! | AGATTACTTTTTTGACTGGT+GGG | - | chr1.1:73296744-73296763 | MS.gene006357:CDS | 30.0% |
| !!! | ATTCCCAAGCTCATTTTTTA+GGG | + | chr1.1:73295734-73295753 | None:intergenic | 30.0% |
| !!! | CAGATTTTAATTGTCTGAAG+AGG | - | chr1.1:73296897-73296916 | MS.gene006357:intron | 30.0% |
| AAATCTGATGATCCCACAAA+CGG | - | chr1.1:73295292-73295311 | MS.gene006357:intron | 35.0% | |
| AACCTAAAACACAGATGGTA+AGG | + | chr1.1:73296095-73296114 | None:intergenic | 35.0% | |
| AAGTGTAACAAAAGCCAATG+CGG | + | chr1.1:73296209-73296228 | None:intergenic | 35.0% | |
| ACCTACAAAACACGAATTGT+GGG | + | chr1.1:73295272-73295291 | None:intergenic | 35.0% | |
| AGAGTCTTTAGCAATTCTCA+AGG | + | chr1.1:73296484-73296503 | None:intergenic | 35.0% | |
| AGGTTGGATCAGATGAATTT+GGG | - | chr1.1:73296110-73296129 | MS.gene006357:intron | 35.0% | |
| CATAGTGCCAATCTCAAATT+CGG | + | chr1.1:73296528-73296547 | None:intergenic | 35.0% | |
| GACTGGTATAATGAGCATAT+GGG | - | chr1.1:73296569-73296588 | MS.gene006357:intron | 35.0% | |
| GTGGAAATCGGATTTATAGT+TGG | + | chr1.1:73295862-73295881 | None:intergenic | 35.0% | |
| TAACTTTGGCAAGCTTACTT+TGG | + | chr1.1:73296870-73296889 | None:intergenic | 35.0% | |
| TAATCACCAATTCCATGTGA+AGG | - | chr1.1:73295025-73295044 | MS.gene006357:intron | 35.0% | |
| TACCTACAAAACACGAATTG+TGG | + | chr1.1:73295273-73295292 | None:intergenic | 35.0% | |
| TCAAACTGATGGAACCATAA+TGG | + | chr1.1:73296428-73296447 | None:intergenic | 35.0% | |
| TGACCATAACCTCATTGAAA+AGG | - | chr1.1:73296303-73296322 | MS.gene006357:intron | 35.0% | |
| TGATCACTAAATTTGTGTGC+AGG | - | chr1.1:73297121-73297140 | MS.gene006357:intron | 35.0% | |
| TGTACTTGTAGATTGTACCT+AGG | - | chr1.1:73295953-73295972 | MS.gene006357:CDS | 35.0% | |
| TTGCTCTTTATTCTGATGTG+TGG | - | chr1.1:73296949-73296968 | MS.gene006357:intron | 35.0% | |
| TTGTGATCTAGGTTACAAAC+TGG | - | chr1.1:73294996-73295015 | MS.gene006357:CDS | 35.0% | |
| TTTATTGCAGATCAGTGAAG+AGG | - | chr1.1:73296721-73296740 | MS.gene006357:CDS | 35.0% | |
| TTTGTTACACTTAGAGCTGA+TGG | - | chr1.1:73296217-73296236 | MS.gene006357:intron | 35.0% | |
| ! | AATAACACTTCAGATGGACT+CGG | + | chr1.1:73296695-73296714 | None:intergenic | 35.0% |
| ! | AATAGATTTTGTGCCTACAG+TGG | - | chr1.1:73295363-73295382 | MS.gene006357:CDS | 35.0% |
| ! | ATAGATTTTGTGCCTACAGT+GGG | - | chr1.1:73295364-73295383 | MS.gene006357:CDS | 35.0% |
| ! | ATTGGCATAAGGATGTTTTG+TGG | - | chr1.1:73295175-73295194 | MS.gene006357:intron | 35.0% |
| ! | GTACCTTTTCAATGAGGTTA+TGG | + | chr1.1:73296309-73296328 | None:intergenic | 35.0% |
| ! | GTATGATCCGAATTTGAGAT+TGG | - | chr1.1:73296518-73296537 | MS.gene006357:intron | 35.0% |
| ! | TAGGTTGGATCAGATGAATT+TGG | - | chr1.1:73296109-73296128 | MS.gene006357:intron | 35.0% |
| ! | TTCCTTACCATCTGTGTTTT+AGG | - | chr1.1:73296090-73296109 | MS.gene006357:intron | 35.0% |
| !! | AGTTTGGCTATTGGCTATTT+TGG | - | chr1.1:73295109-73295128 | MS.gene006357:intron | 35.0% |
| !! | TTACCATCTGTGTTTTAGGT+TGG | - | chr1.1:73296094-73296113 | MS.gene006357:intron | 35.0% |
| !! | TTCAAGGTACCTTTTCAATG+AGG | + | chr1.1:73296315-73296334 | None:intergenic | 35.0% |
| !!! | CATTCCCAAGCTCATTTTTT+AGG | + | chr1.1:73295735-73295754 | None:intergenic | 35.0% |
| !!! | GAGATTACTTTTTTGACTGG+TGG | - | chr1.1:73296743-73296762 | MS.gene006357:CDS | 35.0% |
| !!! | GAGGAGATTACTTTTTTGAC+TGG | - | chr1.1:73296740-73296759 | MS.gene006357:CDS | 35.0% |
| !!! | GATTACTTTTTTGACTGGTG+GGG | - | chr1.1:73296745-73296764 | MS.gene006357:CDS | 35.0% |
| AAGTAGAACAGGGTGGAAAT+CGG | + | chr1.1:73295874-73295893 | None:intergenic | 40.0% | |
| AATGTGGCCATAAAGACCTT+TGG | - | chr1.1:73296354-73296373 | MS.gene006357:intron | 40.0% | |
| AATTGTTACTGAAGGGTCAG+AGG | - | chr1.1:73296829-73296848 | MS.gene006357:CDS | 40.0% | |
| AGGAAAAAAGTAGAACAGGG+TGG | + | chr1.1:73295881-73295900 | None:intergenic | 40.0% | |
| ATGTTGATACATCTGGCATG+CGG | - | chr1.1:73296164-73296183 | MS.gene006357:intron | 40.0% | |
| ATTCCATGTGAAGGTCATCA+TGG | - | chr1.1:73295034-73295053 | MS.gene006357:intron | 40.0% | |
| ATTGTTACTGAAGGGTCAGA+GGG | - | chr1.1:73296830-73296849 | MS.gene006357:CDS | 40.0% | |
| GATCACTACTAGTTGAATGC+TGG | + | chr1.1:73297106-73297125 | None:intergenic | 40.0% | |
| GATCCAACCTAAAACACAGA+TGG | + | chr1.1:73296100-73296119 | None:intergenic | 40.0% | |
| GCATATCAGCACTAGGATTT+CGG | + | chr1.1:73296264-73296283 | None:intergenic | 40.0% | |
| GTTAAACCTGTTGACACAAC+TGG | - | chr1.1:73297173-73297192 | MS.gene006357:intron | 40.0% | |
| TACCTCGAAAATACTTGGGT+CGG | + | chr1.1:73297243-73297262 | None:intergenic | 40.0% | |
| TGATGACCTTCACATGGAAT+TGG | + | chr1.1:73295034-73295053 | None:intergenic | 40.0% | |
| TGGCTCATCAATCAAACTGA+TGG | + | chr1.1:73296439-73296458 | None:intergenic | 40.0% | |
| TTGCGAAATATAGCGCTTTC+TGG | + | chr1.1:73297366-73297385 | None:intergenic | 40.0% | |
| TTTCTTGAAAGCAGGTGCTT+CGG | + | chr1.1:73295404-73295423 | None:intergenic | 40.0% | |
| ! | ACCCACAATTCGTGTTTTGT+AGG | - | chr1.1:73295268-73295287 | MS.gene006357:intron | 40.0% |
| ! | CGAATTTGAGATTGGCACTA+TGG | - | chr1.1:73296526-73296545 | MS.gene006357:intron | 40.0% |
| ! | CTGGAGATGCATTTGTTAGT+GGG | - | chr1.1:73297198-73297217 | MS.gene006357:intron | 40.0% |
| ! | GGACTGGTATAATGAGCATA+TGG | - | chr1.1:73296568-73296587 | MS.gene006357:intron | 40.0% |
| ! | TGATGTGTGGACTGAAATGT+TGG | - | chr1.1:73296962-73296981 | MS.gene006357:intron | 40.0% |
| ! | TTCATCTGCATTTCTAGGCA+AGG | - | chr1.1:73295477-73295496 | MS.gene006357:intron | 40.0% |
| !! | CAGGATTTTAAGGGCAAAGT+TGG | - | chr1.1:73297140-73297159 | MS.gene006357:intron | 40.0% |
| !! | GATTTTAAGGGCAAAGTTGG+AGG | - | chr1.1:73297143-73297162 | MS.gene006357:intron | 40.0% |
| !!! | AGTGGACTGGTTGTTTGTTT+TGG | - | chr1.1:73295331-73295350 | MS.gene006357:CDS | 40.0% |
| AACAAAAGCCAATGCGGTTC+TGG | + | chr1.1:73296203-73296222 | None:intergenic | 45.0% | |
| AATTGCCCCTCTCTTTGTCA+CGG | + | chr1.1:73297407-73297426 | None:intergenic | 45.0% | |
| CAACCATGATGACCTTCACA+TGG | + | chr1.1:73295040-73295059 | None:intergenic | 45.0% | |
| CATGTGAAGGTCATCATGGT+TGG | - | chr1.1:73295038-73295057 | MS.gene006357:intron | 45.0% | |
| CGGGTTGTAAAACTTGAGCA+AGG | - | chr1.1:73297031-73297050 | MS.gene006357:intron | 45.0% | |
| GGATCTAGCCGATGTCATAA+AGG | - | chr1.1:73296590-73296609 | MS.gene006357:intron | 45.0% | |
| GTACAACGAAACAAGTGGAC+TGG | - | chr1.1:73295318-73295337 | MS.gene006357:CDS | 45.0% | |
| TCGTTGTACTCTCCGTTTGT+GGG | + | chr1.1:73295307-73295326 | None:intergenic | 45.0% | |
| TGATACTCGACGACGAATAG+CGG | - | chr1.1:73297011-73297030 | MS.gene006357:intron | 45.0% | |
| TTCGTTGTACTCTCCGTTTG+TGG | + | chr1.1:73295308-73295327 | None:intergenic | 45.0% | |
| ! | GCATCTTTTGTAGGTAGTGC+AGG | + | chr1.1:73297430-73297449 | None:intergenic | 45.0% |
| ! | GCTGGAGATGCATTTGTTAG+TGG | - | chr1.1:73297197-73297216 | MS.gene006357:intron | 45.0% |
| ! | GGAGAGTACAACGAAACAAG+TGG | - | chr1.1:73295313-73295332 | MS.gene006357:CDS | 45.0% |
| ! | TCCAGAAGCATATCAGCACT+AGG | + | chr1.1:73296271-73296290 | None:intergenic | 45.0% |
| ! | TGCAGGACAGCATCTTTTGT+AGG | + | chr1.1:73297439-73297458 | None:intergenic | 45.0% |
| ! | TTCCGACCCAAGTATTTTCG+AGG | - | chr1.1:73297238-73297257 | MS.gene006357:intron | 45.0% |
| !! | TCCTAGTGCTGATATGCTTC+TGG | - | chr1.1:73296267-73296286 | MS.gene006357:intron | 45.0% |
| !! | AAAAGTTTAAAAAAAAAAAT+AGG | + | chr1.1:73295221-73295240 | None:intergenic | 5.0% |
| !!! | TTTAACTTATTTTATTTTTT+TGG | + | chr1.1:73294841-73294860 | None:intergenic | 5.0% |
| CAGTTGGCATCTCTAGGTTG+GGG | - | chr1.1:73295452-73295471 | MS.gene006357:intron | 50.0% | |
| CCAGGAGCTTTCTTGAAAGC+AGG | + | chr1.1:73295412-73295431 | None:intergenic | 50.0% | |
| CCTGCTTTCAAGAAAGCTCC+TGG | - | chr1.1:73295409-73295428 | MS.gene006357:CDS | 50.0% | |
| CGATCACCGTGACAAAGAGA+GGG | - | chr1.1:73297398-73297417 | MS.gene006357:intron | 50.0% | |
| GATACTCGACGACGAATAGC+GGG | - | chr1.1:73297012-73297031 | MS.gene006357:intron | 50.0% | |
| GATCACCGTGACAAAGAGAG+GGG | - | chr1.1:73297399-73297418 | MS.gene006357:intron | 50.0% | |
| GCAGTTGGCATCTCTAGGTT+GGG | - | chr1.1:73295451-73295470 | MS.gene006357:intron | 50.0% | |
| GCTTTCAAGAAAGCTCCTGG+TGG | - | chr1.1:73295412-73295431 | MS.gene006357:CDS | 50.0% | |
| GGGGGTTCATCTGCATTTCT+AGG | - | chr1.1:73295472-73295491 | MS.gene006357:intron | 50.0% | |
| TTCTGATGCCAGAACCGCAT+TGG | - | chr1.1:73296192-73296211 | MS.gene006357:intron | 50.0% | |
| ! | AGTTGGCATCTCTAGGTTGG+GGG | - | chr1.1:73295453-73295472 | MS.gene006357:intron | 50.0% |
| ! | CTTGAGCAAGGTTTGCTTCG+AGG | - | chr1.1:73297043-73297062 | MS.gene006357:intron | 50.0% |
| ! | GATTTTGTGCCTACAGTGGG+TGG | - | chr1.1:73295367-73295386 | MS.gene006357:CDS | 50.0% |
| !! | GCAAGATGAGCTGACTTGCA+TGG | + | chr1.1:73296459-73296478 | None:intergenic | 50.0% |
| ACGTGGCAGTTGGCATCTCT+AGG | - | chr1.1:73295446-73295465 | MS.gene006357:intron | 55.0% | |
| AGAGACACTCCACCCACTGT+AGG | + | chr1.1:73295379-73295398 | None:intergenic | 55.0% | |
| ATGCCAACTGCCACGTTAGC+GGG | + | chr1.1:73295442-73295461 | None:intergenic | 55.0% | |
| CCAGCACCAGTTGTGTCAAC+AGG | + | chr1.1:73297182-73297201 | None:intergenic | 55.0% | |
| CCTGTTGACACAACTGGTGC+TGG | - | chr1.1:73297179-73297198 | MS.gene006357:intron | 55.0% | |
| GATGCCAACTGCCACGTTAG+CGG | + | chr1.1:73295443-73295462 | None:intergenic | 55.0% | |
| GCGATCACCGTGACAAAGAG+AGG | - | chr1.1:73297397-73297416 | MS.gene006357:intron | 55.0% | |
| GGCAGTTGGCATCTCTAGGT+TGG | - | chr1.1:73295450-73295469 | MS.gene006357:intron | 55.0% | |
| ! | GTTGGCATCTCTAGGTTGGG+GGG | - | chr1.1:73295454-73295473 | MS.gene006357:intron | 55.0% |
| GGCACTATGGCCATCAGCTG+AGG | - | chr1.1:73296539-73296558 | MS.gene006357:intron | 60.0% | |
| GCTCCCGCTAACGTGGCAGT+TGG | - | chr1.1:73295436-73295455 | MS.gene006357:intron | 65.0% | |
| GGCCATCAGCTGAGGCTGCT+CGG | - | chr1.1:73296547-73296566 | MS.gene006357:intron | 65.0% | |
| GTCCGAGCAGCCTCAGCTGA+TGG | + | chr1.1:73296552-73296571 | None:intergenic | 65.0% | |
| TCAGCTGAGGCTGCTCGGAC+TGG | - | chr1.1:73296552-73296571 | MS.gene006357:intron | 65.0% | |
| ! | TGGTGGTGCTCCCGCTAACG+TGG | - | chr1.1:73295429-73295448 | MS.gene006357:intron | 65.0% |
| !! | ACGTTAGCGGGAGCACCACC+AGG | + | chr1.1:73295430-73295449 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 73294696 | 73297474 | 73294696 | ID=MS.gene006357 |
| chr1.1 | mRNA | 73294696 | 73297474 | 73294696 | ID=MS.gene006357.t1;Parent=MS.gene006357 |
| chr1.1 | exon | 73297471 | 73297474 | 73297471 | ID=MS.gene006357.t1.exon1;Parent=MS.gene006357.t1 |
| chr1.1 | CDS | 73297471 | 73297474 | 73297471 | ID=cds.MS.gene006357.t1;Parent=MS.gene006357.t1 |
| chr1.1 | exon | 73296672 | 73296880 | 73296672 | ID=MS.gene006357.t1.exon2;Parent=MS.gene006357.t1 |
| chr1.1 | CDS | 73296672 | 73296880 | 73296672 | ID=cds.MS.gene006357.t1;Parent=MS.gene006357.t1 |
| chr1.1 | exon | 73295846 | 73296058 | 73295846 | ID=MS.gene006357.t1.exon3;Parent=MS.gene006357.t1 |
| chr1.1 | CDS | 73295846 | 73296058 | 73295846 | ID=cds.MS.gene006357.t1;Parent=MS.gene006357.t1 |
| chr1.1 | exon | 73295559 | 73295756 | 73295559 | ID=MS.gene006357.t1.exon4;Parent=MS.gene006357.t1 |
| chr1.1 | CDS | 73295559 | 73295756 | 73295559 | ID=cds.MS.gene006357.t1;Parent=MS.gene006357.t1 |
| chr1.1 | exon | 73295299 | 73295439 | 73295299 | ID=MS.gene006357.t1.exon5;Parent=MS.gene006357.t1 |
| chr1.1 | CDS | 73295299 | 73295439 | 73295299 | ID=cds.MS.gene006357.t1;Parent=MS.gene006357.t1 |
| chr1.1 | exon | 73294911 | 73295027 | 73294911 | ID=MS.gene006357.t1.exon6;Parent=MS.gene006357.t1 |
| chr1.1 | CDS | 73294911 | 73295027 | 73294911 | ID=cds.MS.gene006357.t1;Parent=MS.gene006357.t1 |
| chr1.1 | exon | 73294696 | 73294821 | 73294696 | ID=MS.gene006357.t1.exon7;Parent=MS.gene006357.t1 |
| chr1.1 | CDS | 73294696 | 73294821 | 73294696 | ID=cds.MS.gene006357.t1;Parent=MS.gene006357.t1 |
| Gene Sequence |
| Protein sequence |
