AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006404

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006404.t1 MTR_1g102870 97.500 200 5 0 1 200 1 200 6.98e-148 409
MS.gene006404.t1 MTR_1g102870 96.795 156 5 0 1 156 1 156 4.42e-112 317
MS.gene006404.t1 MTR_1g102890 65.169 178 62 0 12 189 2 179 4.87e-90 262
MS.gene006404.t1 MTR_1g102890 64.667 150 53 0 12 161 2 151 4.75e-74 221
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006404.t1 AT4G14710 81.026 195 36 1 6 200 6 199 2.43e-120 339
MS.gene006404.t1 AT4G14710 81.026 195 36 1 6 200 6 199 2.43e-120 339
MS.gene006404.t1 AT4G14710 80.928 194 36 1 7 200 9 201 1.57e-119 337
MS.gene006404.t1 AT4G14710 80.612 196 36 2 6 200 6 200 1.68e-118 335
MS.gene006404.t1 AT4G14716 83.516 182 30 0 6 187 6 187 9.63e-118 332
MS.gene006404.t1 AT4G14710 86.782 174 23 0 6 179 6 179 4.10e-116 328
MS.gene006404.t1 AT4G14710 80.874 183 34 1 18 200 1 182 3.44e-112 318
MS.gene006404.t1 AT2G26400 72.500 200 54 1 1 200 1 199 1.08e-111 317
MS.gene006404.t1 AT2G26400 72.500 200 54 1 1 200 16 214 1.34e-111 318
MS.gene006404.t1 AT4G14716 83.529 170 28 0 18 187 1 170 1.19e-109 311
MS.gene006404.t1 AT2G26400 77.095 179 41 0 1 179 16 194 7.08e-108 309
MS.gene006404.t1 AT2G26400 77.095 179 41 0 1 179 1 179 7.14e-108 308
MS.gene006404.t1 AT5G43850 67.978 178 57 0 12 189 2 179 1.23e-93 271

Find 46 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGCTCTGGATCTGTTTC+AGG 0.073924 1.3:+70681140 None:intergenic
TTGATCTTCTCTTCATAATT+TGG 0.180796 1.3:+70680800 None:intergenic
GGATGAGAGCAATTATATTA+AGG 0.311003 1.3:-70680526 MS.gene006404:intron
GTCTCATTGGATCAACTTGC+TGG 0.324867 1.3:-70681299 MS.gene006404:intron
TGGATCTGTTTCAGGGTTAT+CGG 0.326072 1.3:+70681148 None:intergenic
ACCTAAGGAGTTTGTCTCAT+TGG 0.331615 1.3:-70681312 MS.gene006404:CDS
CGATTGTATGGAGTCCAAAT+TGG 0.341557 1.3:+70680055 None:intergenic
AAGAGGAATAATACCTTGTT+GGG 0.350367 1.3:+70682019 None:intergenic
CTAGTTAAATCATACCTTGC+AGG 0.361998 1.3:+70680016 None:intergenic
AGTTCTTCAAGCATGGTATA+TGG 0.375494 1.3:-70681375 MS.gene006404:CDS
CAGATCTTGGAGTCCTTAGC+TGG 0.402181 1.3:-70681181 MS.gene006404:CDS
TCAGCTCTGGATCTGTTTCA+GGG 0.414532 1.3:+70681141 None:intergenic
CTCCTTAGGTTCTTTGTGAT+GGG 0.423729 1.3:+70681325 None:intergenic
AAAGAGGAATAATACCTTGT+TGG 0.425539 1.3:+70682018 None:intergenic
CGTTATTGTGTCGCTGGAAG+TGG 0.433261 1.3:-70680737 MS.gene006404:intron
ATGAGGCTTGGATTCGTGTA+TGG 0.439403 1.3:-70680605 MS.gene006404:CDS
TGATCATGTGGGCGATTGTA+TGG 0.456398 1.3:+70680043 None:intergenic
ACTCCTTAGGTTCTTTGTGA+TGG 0.457485 1.3:+70681324 None:intergenic
TGCTTGAAGAACTTCCTCTC+GGG 0.472007 1.3:+70681385 None:intergenic
TTTAGGTTACTTTGATGTGA+GGG 0.488786 1.3:-70680634 MS.gene006404:intron
TGCTCTCATCCAATGTAAAA+CGG 0.492747 1.3:+70680538 None:intergenic
GAGATCCGTTATTGTGTCGC+TGG 0.505951 1.3:-70680743 MS.gene006404:CDS
TGAGGGATCGCAATGAGGCT+TGG 0.507939 1.3:-70680617 MS.gene006404:CDS
CACTTCCAGCGACACAATAA+CGG 0.513919 1.3:+70680738 None:intergenic
CTTTAGGTTACTTTGATGTG+AGG 0.517016 1.3:-70680635 MS.gene006404:intron
AGAACGTGGTTACTCTTACA+TGG 0.526887 1.3:-70681105 MS.gene006404:intron
CGTGTATGGGTGAAGAAAGG+AGG 0.536845 1.3:-70680591 MS.gene006404:CDS
TGAGGCTTGGATTCGTGTAT+GGG 0.561379 1.3:-70680604 MS.gene006404:CDS
TCCAATGAGACAAACTCCTT+AGG 0.562972 1.3:+70681311 None:intergenic
ATTCGTGTATGGGTGAAGAA+AGG 0.567203 1.3:-70680594 MS.gene006404:CDS
TCCCCATCACAAAGAACCTA+AGG 0.567435 1.3:-70681327 MS.gene006404:CDS
AAACGGTGATAAATTCCAGC+AGG 0.574056 1.3:+70680555 None:intergenic
CGGCATCTAACTTCCAGCTA+AGG 0.574902 1.3:+70681168 None:intergenic
ATGCTTGAAGAACTTCCTCT+CGG 0.577106 1.3:+70681384 None:intergenic
TCCTTAGGTTCTTTGTGATG+GGG 0.584649 1.3:+70681326 None:intergenic
GAGAGGAAGTTCTTCAAGCA+TGG 0.603425 1.3:-70681382 MS.gene006404:CDS
AGAGGAATAATACCTTGTTG+GGG 0.604563 1.3:+70682020 None:intergenic
CACATGATCATCTTCCTGCA+AGG 0.620106 1.3:-70680030 MS.gene006404:intron
GCTTGAAGAACTTCCTCTCG+GGG 0.627432 1.3:+70681386 None:intergenic
AGAGCATCTGCATACTGATG+AGG 0.635012 1.3:-70680765 MS.gene006404:CDS
AAGCAGTGGCGTCAACAGCA+TGG 0.641418 1.3:+70679876 None:intergenic
CTTGCAGGAAGATGATCATG+TGG 0.641989 1.3:+70680031 None:intergenic
TGATGTGAGGGATCGCAATG+AGG 0.643923 1.3:-70680622 MS.gene006404:CDS
GCAGAATCAATCTTAAGCAG+TGG 0.655901 1.3:+70679862 None:intergenic
GAGGAATAATACCTTGTTGG+GGG 0.678049 1.3:+70682021 None:intergenic
TTGCAGGAAGATGATCATGT+GGG 0.692332 1.3:+70680032 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACATAATTATTTTTCA+GGG + chr1.3:70679982-70680001 None:intergenic 10.0%
!! TAACATTCAAAACTATTTAT+GGG - chr1.3:70680944-70680963 MS.gene006404:intron 15.0%
!! TCAATTATAACAAATGTATT+TGG + chr1.3:70680154-70680173 None:intergenic 15.0%
!!! AAGTTTTAAATGTTTTAGAA+GGG - chr1.3:70680349-70680368 MS.gene006404:intron 15.0%
!!! CAAAAACATAATTATTTTTC+AGG + chr1.3:70679983-70680002 None:intergenic 15.0%
!!! TAAGTTTTAAATGTTTTAGA+AGG - chr1.3:70680348-70680367 MS.gene006404:intron 15.0%
!!! TTTTTTGTGATTAATTTGTT+AGG - chr1.3:70680239-70680258 MS.gene006404:intron 15.0%
!! AAAGAAAAACAGGAAATATT+TGG + chr1.3:70681251-70681270 None:intergenic 20.0%
!! ACAGAAAAATTATAAGCTAA+GGG + chr1.3:70681470-70681489 None:intergenic 20.0%
!! AGCTAAAAGATAACAAAAAT+AGG + chr1.3:70681709-70681728 None:intergenic 20.0%
!! ATATTCATATGCTAATTGTA+GGG - chr1.3:70680652-70680671 MS.gene006404:intron 20.0%
!! CATTGAATAACTAATGTATA+TGG - chr1.3:70680115-70680134 MS.gene006404:intron 20.0%
!! GAAACTTAAAATTATCAACA+TGG + chr1.3:70680057-70680076 None:intergenic 20.0%
!! GTAACATTCAAAACTATTTA+TGG - chr1.3:70680943-70680962 MS.gene006404:intron 20.0%
!! GTTTAATAAAAAATACGTGA+AGG + chr1.3:70681597-70681616 None:intergenic 20.0%
!! TATATTCATATGCTAATTGT+AGG - chr1.3:70680651-70680670 MS.gene006404:intron 20.0%
!! TTGAATATATGTTAAGATGA+AGG - chr1.3:70681656-70681675 MS.gene006404:intron 20.0%
!!! AAATATTTGGTAACTTAACA+GGG + chr1.3:70681238-70681257 None:intergenic 20.0%
!!! AATATTTCCTGTTTTTCTTT+AGG - chr1.3:70681251-70681270 MS.gene006404:intron 20.0%
!!! CGTATTTTTTATTAAACACA+AGG - chr1.3:70681600-70681619 MS.gene006404:intron 20.0%
!!! TACATAATAGGGTTTTATAT+AGG - chr1.3:70680212-70680231 MS.gene006404:intron 20.0%
! AAAGTAACCTAAAGAAAAAC+AGG + chr1.3:70681261-70681280 None:intergenic 25.0%
! AAGCTAAAGTTATCAGAAAT+TGG + chr1.3:70681502-70681521 None:intergenic 25.0%
! AGCTAAAGTTATCAGAAATT+GGG + chr1.3:70681501-70681520 None:intergenic 25.0%
! AGCTAAGAAAATGGTATAAT+CGG + chr1.3:70679928-70679947 None:intergenic 25.0%
! AGGAATCTACATACATAATA+GGG - chr1.3:70680201-70680220 MS.gene006404:intron 25.0%
! GACAGAAAAATTATAAGCTA+AGG + chr1.3:70681471-70681490 None:intergenic 25.0%
! GTGAATTAAAGCTAAGAAAA+TGG + chr1.3:70679937-70679956 None:intergenic 25.0%
! TAGGAATCTACATACATAAT+AGG - chr1.3:70680200-70680219 MS.gene006404:intron 25.0%
! TTGATCTTCTCTTCATAATT+TGG + chr1.3:70681105-70681124 None:intergenic 25.0%
!! AATTTATCACCGTTTTACAT+TGG - chr1.3:70681355-70681374 MS.gene006404:CDS 25.0%
!! GAAATATTTGGTAACTTAAC+AGG + chr1.3:70681239-70681258 None:intergenic 25.0%
!!! AGTTAAGTTGAAATAGCTTA+TGG + chr1.3:70680022-70680041 None:intergenic 25.0%
!!! CATAATTTGGTAACTTTTCT+GGG + chr1.3:70681092-70681111 None:intergenic 25.0%
!!! TAACTTTAGCTTTTGAACTT+TGG - chr1.3:70681510-70681529 MS.gene006404:intron 25.0%
!!! TCATAATTTGGTAACTTTTC+TGG + chr1.3:70681093-70681112 None:intergenic 25.0%
!!! TGATTAATTTGTTAGGAGTA+GGG - chr1.3:70680246-70680265 MS.gene006404:intron 25.0%
AAAGAGGAATAATACCTTGT+TGG + chr1.3:70679887-70679906 None:intergenic 30.0%
AAGAGGAATAATACCTTGTT+GGG + chr1.3:70679886-70679905 None:intergenic 30.0%
AGTAATTAGCAGTAGCATAT+GGG - chr1.3:70681912-70681931 MS.gene006404:intron 30.0%
GCACATGATATAAACAAGAT+TGG + chr1.3:70680381-70680400 None:intergenic 30.0%
GGATGAGAGCAATTATATTA+AGG - chr1.3:70681376-70681395 MS.gene006404:CDS 30.0%
TAGTAATTAGCAGTAGCATA+TGG - chr1.3:70681911-70681930 MS.gene006404:intron 30.0%
TTCGCATATGCATGTTTATT+TGG + chr1.3:70680880-70680899 None:intergenic 30.0%
TTGCATGATTCTAATTATGC+AGG - chr1.3:70681801-70681820 MS.gene006404:intron 30.0%
! GCAATATATCAAGACTTTTG+TGG - chr1.3:70681987-70682006 MS.gene006404:intron 30.0%
! TGATTTTCTATTAGCAACAG+AGG + chr1.3:70681441-70681460 None:intergenic 30.0%
! TTTAGGTTACTTTGATGTGA+GGG - chr1.3:70681268-70681287 MS.gene006404:intron 30.0%
!! ATGTCTGCATTTTAACATTC+CGG - chr1.3:70681002-70681021 MS.gene006404:intron 30.0%
!! ATTAATTTGTTAGGAGTAGG+GGG - chr1.3:70680248-70680267 MS.gene006404:intron 30.0%
!! CTTCCTATCATTTTTATCTG+AGG - chr1.3:70681035-70681054 MS.gene006404:intron 30.0%
!! GATTAATTTGTTAGGAGTAG+GGG - chr1.3:70680247-70680266 MS.gene006404:intron 30.0%
!! GTGATTAATTTGTTAGGAGT+AGG - chr1.3:70680245-70680264 MS.gene006404:intron 30.0%
!! TTACATTTTGTGTTGTTGAG+AGG - chr1.3:70680444-70680463 MS.gene006404:intron 30.0%
!!! ATTTTTCAGGGAAAAGAAGA+AGG + chr1.3:70679970-70679989 None:intergenic 30.0%
!!! TTTCATACGTCGTTTTTCAT+AGG - chr1.3:70680491-70680510 MS.gene006404:intron 30.0%
!!! TTTTTCAGGGAAAAGAAGAA+GGG + chr1.3:70679969-70679988 None:intergenic 30.0%
AAAAAGATTCGTGAAGAACG+TGG - chr1.3:70680783-70680802 MS.gene006404:CDS 35.0%
AAAATGAACGAGAGGTAAAG+AGG + chr1.3:70679903-70679922 None:intergenic 35.0%
AATCGGAAAAAATGAACGAG+AGG + chr1.3:70679911-70679930 None:intergenic 35.0%
AGAGGAATAATACCTTGTTG+GGG + chr1.3:70679885-70679904 None:intergenic 35.0%
AGTTCTTCAAGCATGGTATA+TGG - chr1.3:70680527-70680546 MS.gene006404:CDS 35.0%
CATTTGACGTCAAAACGAAA+AGG + chr1.3:70680985-70681004 None:intergenic 35.0%
CGTGTTAATATTGCAGATCT+TGG - chr1.3:70680708-70680727 MS.gene006404:intron 35.0%
CTAGTTAAATCATACCTTGC+AGG + chr1.3:70681889-70681908 None:intergenic 35.0%
GAGACTGTAATTAGTGAGTT+GGG - chr1.3:70680172-70680191 MS.gene006404:intron 35.0%
GAGGTTCGACATAAATTATC+TGG + chr1.3:70681942-70681961 None:intergenic 35.0%
GTGCCTCAGATAAAAATGAT+AGG + chr1.3:70681041-70681060 None:intergenic 35.0%
TGAGACTGTAATTAGTGAGT+TGG - chr1.3:70680171-70680190 MS.gene006404:intron 35.0%
TGAGAGGTTGTAGAAATAAG+AGG - chr1.3:70680460-70680479 MS.gene006404:intron 35.0%
TGCTCTCATCCAATGTAAAA+CGG + chr1.3:70681367-70681386 None:intergenic 35.0%
! ATTAGTGAGTTGGGTTTGAT+AGG - chr1.3:70680181-70680200 MS.gene006404:intron 35.0%
! ATTTGGTAACTTAACAGGGT+AGG + chr1.3:70681234-70681253 None:intergenic 35.0%
! CTTTAGGTTACTTTGATGTG+AGG - chr1.3:70681267-70681286 MS.gene006404:intron 35.0%
! GCATGTTTATTTGGAGTAGT+GGG + chr1.3:70680871-70680890 None:intergenic 35.0%
! GGATGTGATTGCAAAGATTT+TGG - chr1.3:70681621-70681640 MS.gene006404:intron 35.0%
! TATCAAGACTTTTGTGGAGA+AGG - chr1.3:70681993-70682012 MS.gene006404:intron 35.0%
! TGCATGTTTATTTGGAGTAG+TGG + chr1.3:70680872-70680891 None:intergenic 35.0%
! TTCGATAAAGCACTTGTACA+TGG + chr1.3:70680317-70680336 None:intergenic 35.0%
! TTTATTTGGAGTAGTGGGAA+AGG + chr1.3:70680866-70680885 None:intergenic 35.0%
!! AGGGGGATTGATTTGTATTA+GGG - chr1.3:70680265-70680284 MS.gene006404:intron 35.0%
!! TAGGGGGATTGATTTGTATT+AGG - chr1.3:70680264-70680283 MS.gene006404:intron 35.0%
!! TTTTTGTTGGTGAGCCAATT+TGG - chr1.3:70681833-70681852 MS.gene006404:intron 35.0%
AAACGGTGATAAATTCCAGC+AGG + chr1.3:70681350-70681369 None:intergenic 40.0%
ACCTAAGGAGTTTGTCTCAT+TGG - chr1.3:70680590-70680609 MS.gene006404:CDS 40.0%
ACTCCTTAGGTTCTTTGTGA+TGG + chr1.3:70680581-70680600 None:intergenic 40.0%
AGAACGTGGTTACTCTTACA+TGG - chr1.3:70680797-70680816 MS.gene006404:CDS 40.0%
AGTAGCAGTAGGCATCTTAT+TGG + chr1.3:70680417-70680436 None:intergenic 40.0%
ATGCTTGAAGAACTTCCTCT+CGG + chr1.3:70680521-70680540 None:intergenic 40.0%
ATTCGTGTATGGGTGAAGAA+AGG - chr1.3:70681308-70681327 MS.gene006404:CDS 40.0%
CACAACAGGACTTCCAAAAA+GGG + chr1.3:70681567-70681586 None:intergenic 40.0%
CGATTGTATGGAGTCCAAAT+TGG + chr1.3:70681850-70681869 None:intergenic 40.0%
CGCATTGAAATCGCATTATG+AGG + chr1.3:70681961-70681980 None:intergenic 40.0%
CTCCTTAGGTTCTTTGTGAT+GGG + chr1.3:70680580-70680599 None:intergenic 40.0%
GAGGAATAATACCTTGTTGG+GGG + chr1.3:70679884-70679903 None:intergenic 40.0%
GTAGCAGTAGGCATCTTATT+GGG + chr1.3:70680416-70680435 None:intergenic 40.0%
TCCAATGAGACAAACTCCTT+AGG + chr1.3:70680594-70680613 None:intergenic 40.0%
TCCTTAGGTTCTTTGTGATG+GGG + chr1.3:70680579-70680598 None:intergenic 40.0%
TGGATAACAGACTACGAAGT+TGG + chr1.3:70680297-70680316 None:intergenic 40.0%
TGGATCTGTTTCAGGGTTAT+CGG + chr1.3:70680757-70680776 None:intergenic 40.0%
TTGCAGGAAGATGATCATGT+GGG + chr1.3:70681873-70681892 None:intergenic 40.0%
! GATAGGAAGCATGATATAGC+CGG + chr1.3:70681024-70681043 None:intergenic 40.0%
! GGAATGATCATTTTACCTGC+TGG - chr1.3:70681332-70681351 MS.gene006404:CDS 40.0%
! TTTTCTGCAGGATGTTTGTG+AGG - chr1.3:70681062-70681081 MS.gene006404:intron 40.0%
!!! CAGGCATTGCGATTTTTTGT+TGG - chr1.3:70681820-70681839 MS.gene006404:intron 40.0%
!!! TCACGAATCTTTTTCAGCTC+TGG + chr1.3:70680777-70680796 None:intergenic 40.0%
AATGCGATTTCAATGCGCAG+AGG - chr1.3:70681964-70681983 MS.gene006404:intron 45.0%
ATGAGGCTTGGATTCGTGTA+TGG - chr1.3:70681297-70681316 MS.gene006404:intron 45.0%
ATGCGATTTCAATGCGCAGA+GGG - chr1.3:70681965-70681984 MS.gene006404:intron 45.0%
CACATGATCATCTTCCTGCA+AGG - chr1.3:70681872-70681891 MS.gene006404:intron 45.0%
CACTTCCAGCGACACAATAA+CGG + chr1.3:70681167-70681186 None:intergenic 45.0%
CTTGCAGGAAGATGATCATG+TGG + chr1.3:70681874-70681893 None:intergenic 45.0%
GAGAGGAAGTTCTTCAAGCA+TGG - chr1.3:70680520-70680539 MS.gene006404:intron 45.0%
GCACAACAGGACTTCCAAAA+AGG + chr1.3:70681568-70681587 None:intergenic 45.0%
GTAACAGCAACAGTAGCAGT+AGG + chr1.3:70680428-70680447 None:intergenic 45.0%
GTAACTTAACAGGGTAGGCA+TGG + chr1.3:70681229-70681248 None:intergenic 45.0%
GTCTCATTGGATCAACTTGC+TGG - chr1.3:70680603-70680622 MS.gene006404:CDS 45.0%
TCCCCATCACAAAGAACCTA+AGG - chr1.3:70680575-70680594 MS.gene006404:CDS 45.0%
TGAGGCTTGGATTCGTGTAT+GGG - chr1.3:70681298-70681317 MS.gene006404:intron 45.0%
TGATCATGTGGGCGATTGTA+TGG + chr1.3:70681862-70681881 None:intergenic 45.0%
TGCTTGAAGAACTTCCTCTC+GGG + chr1.3:70680520-70680539 None:intergenic 45.0%
! AGAGCATCTGCATACTGATG+AGG - chr1.3:70681137-70681156 MS.gene006404:CDS 45.0%
! TTTTTCATAGGATCCCCGAG+AGG - chr1.3:70680503-70680522 MS.gene006404:intron 45.0%
!! ATCTGAGGCACATTTTCTGC+AGG - chr1.3:70681050-70681069 MS.gene006404:intron 45.0%
!! TCAGCTCTGGATCTGTTTCA+GGG + chr1.3:70680764-70680783 None:intergenic 45.0%
!! TTCAGCTCTGGATCTGTTTC+AGG + chr1.3:70680765-70680784 None:intergenic 45.0%
CAGATCTTGGAGTCCTTAGC+TGG - chr1.3:70680721-70680740 MS.gene006404:intron 50.0%
CAGGACTTCCAAAAAGGGCA+CGG + chr1.3:70681562-70681581 None:intergenic 50.0%
CGGCATCTAACTTCCAGCTA+AGG + chr1.3:70680737-70680756 None:intergenic 50.0%
CGTGTATGGGTGAAGAAAGG+AGG - chr1.3:70681311-70681330 MS.gene006404:CDS 50.0%
GAGATCCGTTATTGTGTCGC+TGG - chr1.3:70681159-70681178 MS.gene006404:CDS 50.0%
GCTTGAAGAACTTCCTCTCG+GGG + chr1.3:70680519-70680538 None:intergenic 50.0%
TGATGTGAGGGATCGCAATG+AGG - chr1.3:70681280-70681299 MS.gene006404:intron 50.0%
! ACATTGTCCCGTGCCCTTTT+TGG - chr1.3:70681551-70681570 MS.gene006404:intron 50.0%
! AGGACTTCCAAAAAGGGCAC+GGG + chr1.3:70681561-70681580 None:intergenic 50.0%
! CGTTATTGTGTCGCTGGAAG+TGG - chr1.3:70681165-70681184 MS.gene006404:CDS 50.0%
AAGCAGTGGCGTCAACAGCA+TGG + chr1.3:70682029-70682048 None:intergenic 55.0%
GTGAAGGTCAGACGCACAAC+AGG + chr1.3:70681581-70681600 None:intergenic 55.0%
TGAGGGATCGCAATGAGGCT+TGG - chr1.3:70681285-70681304 MS.gene006404:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 70679874 70682050 70679874 ID=MS.gene006404
chr1.3 mRNA 70679874 70682050 70679874 ID=MS.gene006404.t1;Parent=MS.gene006404
chr1.3 exon 70682033 70682050 70682033 ID=MS.gene006404.t1.exon1;Parent=MS.gene006404.t1
chr1.3 CDS 70682033 70682050 70682033 ID=cds.MS.gene006404.t1;Parent=MS.gene006404.t1
chr1.3 exon 70681300 70681411 70681300 ID=MS.gene006404.t1.exon2;Parent=MS.gene006404.t1
chr1.3 CDS 70681300 70681411 70681300 ID=cds.MS.gene006404.t1;Parent=MS.gene006404.t1
chr1.3 exon 70681106 70681200 70681106 ID=MS.gene006404.t1.exon3;Parent=MS.gene006404.t1
chr1.3 CDS 70681106 70681200 70681106 ID=cds.MS.gene006404.t1;Parent=MS.gene006404.t1
chr1.3 exon 70680738 70680852 70680738 ID=MS.gene006404.t1.exon4;Parent=MS.gene006404.t1
chr1.3 CDS 70680738 70680852 70680738 ID=cds.MS.gene006404.t1;Parent=MS.gene006404.t1
chr1.3 exon 70680527 70680651 70680527 ID=MS.gene006404.t1.exon5;Parent=MS.gene006404.t1
chr1.3 CDS 70680527 70680651 70680527 ID=cds.MS.gene006404.t1;Parent=MS.gene006404.t1
chr1.3 exon 70680031 70680101 70680031 ID=MS.gene006404.t1.exon6;Parent=MS.gene006404.t1
chr1.3 CDS 70680031 70680101 70680031 ID=cds.MS.gene006404.t1;Parent=MS.gene006404.t1
chr1.3 exon 70679874 70679940 70679874 ID=MS.gene006404.t1.exon7;Parent=MS.gene006404.t1
chr1.3 CDS 70679874 70679940 70679874 ID=cds.MS.gene006404.t1;Parent=MS.gene006404.t1
Gene Sequence

>MS.gene006404

ATGGTTTCCCCCAACAAGGTATTATTCCTCTTTACCTCTCGTTCATTTTTTCCGATTATACCATTTTCTTAGCTTTAATTCACAAAATTATACCCTTCTTCTTTTCCCTGAAAAATAATTATGTTTTTGTTAATGAATGTTTGTACCATAAGCTATTTCAACTTAACTGCTATCGTTTCTCCATGTTGATAATTTTAAGTTTCTCAAAGAAAATCATAAGCAAAAAATTACTTTTTAGATTCATTGAATAACTAATGTATATGGTCTGAAATATAGACCAAATACATTTGTTATAATTGAGACTGTAATTAGTGAGTTGGGTTTGATAGGAATCTACATACATAATAGGGTTTTATATAGGCAAATTTTTTGTGATTAATTTGTTAGGAGTAGGGGGATTGATTTGTATTAGGGTTCGTTCCAACTTCGTAGTCTGTTATCCATGTACAAGTGCTTTATCGAAATCTTAATCGTTAAGTTTTAAATGTTTTAGAAGGGTTATATCCAATCTTGTTTATATCATGTGCTCAAATTGCTTGCCCAATAAGATGCCTACTGCTACTGTTGCTGTTACATTTTGTGTTGTTGAGAGGTTGTAGAAATAAGAGGAATCATATTTTCATACGTCGTTTTTCATAGGATCCCCGAGAGGAAGTTCTTCAAGCATGGTATATGGATGATAGCAATGAAGATCAAAGACTTCCCCATCACAAAGAACCTAAGGAGTTTGTCTCATTGGATCAACTTGCTGGTAAGCTTCTTGTTGCATGTGTTAGTTATATTCATATGCTAATTGTAGGGTTTGTGCTCACTAGTCACGTCTGAACTTTGACTCGTGTTAATATTGCAGATCTTGGAGTCCTTAGCTGGAAGTTAGATGCCGATAACCCTGAAACAGATCCAGAGCTGAAAAAGATTCGTGAAGAACGTGGTTACTCTTACATGGTTAGTGATGCTAATGTTTTATTGTCATTGTTTAGATAGAACTACCTTTCCCACTACTCCAAATAAACATGCATATGCGAAGAAATATAAAAATATATGTAAAATCACTGCTGCTTAATTATATGTAACATTCAAAACTATTTATGGGAAGTCTAACTTTTATCCTTTTCGTTTTGACGTCAAATGTCTGCATTTTAACATTCCGGCTATATCATGCTTCCTATCATTTTTATCTGAGGCACATTTTCTGCAGGATGTTTGTGAGGTCTGCCCAGAAAAGTTACCAAATTATGAAGAGAAGATCAAGAACTTCTTTGAAGAGCATCTGCATACTGATGAGGAGATCCGTTATTGTGTCGCTGGAAGTGGTATGAACAGATTTCTCATTTGATCTGATTTTCTCGTTACCATGCCTACCCTGTTAAGTTACCAAATATTTCCTGTTTTTCTTTAGGTTACTTTGATGTGAGGGATCGCAATGAGGCTTGGATTCGTGTATGGGTGAAGAAAGGAGGAATGATCATTTTACCTGCTGGAATTTATCACCGTTTTACATTGGATGAGAGCAATTATATTAAGGTATTGATTGCATATTTGCAAATTGTAGCTATACAACTTTCCTCTGTTGCTAATAGAAAATCACTATGTCCCTTAGCTTATAATTTTTCTGTCAATCAGTCCCAATTTCTGATAACTTTAGCTTTTGAACTTTGGTTCTTTGAATACTTTAAAACATTGTCCCGTGCCCTTTTTGGAAGTCCTGTTGTGCGTCTGACCTTCACGTATTTTTTATTAAACACAAGGATGTGATTGCAAAGATTTTGGTTAGTTGCATTCTTGAATATATGTTAAGATGAAGGTTAAACTTTGACGTGACATACTGCAAGCCTATTTTTGTTATCTTTTAGCTGTTGATATCTATCTTCAACTTTTTTTTTTTATCTTAACATTTGCTGAGATTAGTTTACTTCATACGTGTTTCTTGCATGATTCTAATTATGCAGGCATTGCGATTTTTTGTTGGTGAGCCAATTTGGACTCCATACAATCGCCCACATGATCATCTTCCTGCAAGGTATGATTTAACTAGTTTAGTAATTAGCAGTAGCATATGGGACAACCAGATAATTTATGTCGAACCTCATAATGCGATTTCAATGCGCAGAGGGCAATATATCAAGACTTTTGTGGAGAAGGATGTTGCTAACCATGCTGTTGACGCCACTGCTTAA
Protein sequence

>MS.gene006404.t1

MVSPNKDPREEVLQAWYMDDSNEDQRLPHHKEPKEFVSLDQLADLGVLSWKLDADNPETDPELKKIREERGYSYMDVCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEAWIRVWVKKGGMIILPAGIYHRFTLDESNYIKALRFFVGEPIWTPYNRPHDHLPARGQYIKTFVEKDVANHAVDATA