Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070955.t1 | XP_013469761.1 | 97.8 | 180 | 4 | 0 | 1 | 180 | 8 | 187 | 1.10E-102 | 382.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070955.t1 | D7T737 | 82.8 | 180 | 31 | 0 | 1 | 180 | 9 | 188 | 9.1e-90 | 330.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070955.t1 | I3SWK2 | 97.8 | 180 | 4 | 0 | 1 | 180 | 8 | 187 | 7.9e-103 | 382.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene070955 | 0.82081 | 5.64E-53 | -1.69E-46 |
| MS.gene04921 | MS.gene070955 | -0.800191 | 1.62E-48 | -1.69E-46 |
| MS.gene049222 | MS.gene070955 | 0.803447 | 3.47E-49 | -1.69E-46 |
| MS.gene049232 | MS.gene070955 | 0.840414 | 8.82E-58 | -1.69E-46 |
| MS.gene049285 | MS.gene070955 | 0.81248 | 4.15E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene070955 | 0.810895 | 9.18E-51 | -1.69E-46 |
| MS.gene049633 | MS.gene070955 | 0.835132 | 2.00E-56 | -1.69E-46 |
| MS.gene049865 | MS.gene070955 | 0.817702 | 2.87E-52 | -1.69E-46 |
| MS.gene05010 | MS.gene070955 | 0.823434 | 1.39E-53 | -1.69E-46 |
| MS.gene050170 | MS.gene070955 | 0.914963 | 1.03E-84 | -1.69E-46 |
| MS.gene050323 | MS.gene070955 | 0.877026 | 8.74E-69 | -1.69E-46 |
| MS.gene050496 | MS.gene070955 | 0.869914 | 2.17E-66 | -1.69E-46 |
| MS.gene050502 | MS.gene070955 | 0.818159 | 2.27E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene070955 | 0.833888 | 4.12E-56 | -1.69E-46 |
| MS.gene050518 | MS.gene070955 | 0.800443 | 1.44E-48 | -1.69E-46 |
| MS.gene050577 | MS.gene070955 | 0.839689 | 1.36E-57 | -1.69E-46 |
| MS.gene050612 | MS.gene070955 | 0.81791 | 2.58E-52 | -1.69E-46 |
| MS.gene050697 | MS.gene070955 | 0.843004 | 1.83E-58 | -1.69E-46 |
| MS.gene050747 | MS.gene070955 | 0.811998 | 5.29E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene070955 | 0.803569 | 3.27E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene070955 | 0.82353 | 1.32E-53 | -1.69E-46 |
| MS.gene050868 | MS.gene070955 | 0.862458 | 4.99E-64 | -1.69E-46 |
| MS.gene050871 | MS.gene070955 | 0.864969 | 8.29E-65 | -1.69E-46 |
| MS.gene050904 | MS.gene070955 | 0.836087 | 1.15E-56 | -1.69E-46 |
| MS.gene050950 | MS.gene070955 | 0.815212 | 1.04E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene070955 | 0.82068 | 6.04E-53 | -1.69E-46 |
| MS.gene051268 | MS.gene070955 | 0.838182 | 3.35E-57 | -1.69E-46 |
| MS.gene051317 | MS.gene070955 | 0.807298 | 5.41E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene070955 | 0.801033 | 1.09E-48 | -1.69E-46 |
| MS.gene051651 | MS.gene070955 | -0.800243 | 1.58E-48 | -1.69E-46 |
| MS.gene051838 | MS.gene070955 | 0.812115 | 4.99E-51 | -1.69E-46 |
| MS.gene051941 | MS.gene070955 | 0.827094 | 1.89E-54 | -1.69E-46 |
| MS.gene052164 | MS.gene070955 | 0.837661 | 4.56E-57 | -1.69E-46 |
| MS.gene052482 | MS.gene070955 | 0.850473 | 1.66E-60 | -1.69E-46 |
| MS.gene052486 | MS.gene070955 | 0.84852 | 5.82E-60 | -1.69E-46 |
| MS.gene052494 | MS.gene070955 | -0.829096 | 6.23E-55 | -1.69E-46 |
| MS.gene052503 | MS.gene070955 | 0.829246 | 5.73E-55 | -1.69E-46 |
| MS.gene052506 | MS.gene070955 | 0.811337 | 7.36E-51 | -1.69E-46 |
| MS.gene052822 | MS.gene070955 | 0.816776 | 4.65E-52 | -1.69E-46 |
| MS.gene052823 | MS.gene070955 | 0.835812 | 1.35E-56 | -1.69E-46 |
| MS.gene052825 | MS.gene070955 | 0.826084 | 3.29E-54 | -1.69E-46 |
| MS.gene052966 | MS.gene070955 | 0.821964 | 3.05E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene070955 | 0.817943 | 2.54E-52 | -1.69E-46 |
| MS.gene053436 | MS.gene070955 | 0.806476 | 8.08E-50 | -1.69E-46 |
| MS.gene053479 | MS.gene070955 | 0.84463 | 6.71E-59 | -1.69E-46 |
| MS.gene053480 | MS.gene070955 | 0.828757 | 7.53E-55 | -1.69E-46 |
| MS.gene053574 | MS.gene070955 | 0.834719 | 2.55E-56 | -1.69E-46 |
| MS.gene053626 | MS.gene070955 | 0.837613 | 4.69E-57 | -1.69E-46 |
| MS.gene053633 | MS.gene070955 | 0.816544 | 5.24E-52 | -1.69E-46 |
| MS.gene053824 | MS.gene070955 | 0.840015 | 1.12E-57 | -1.69E-46 |
| MS.gene05389 | MS.gene070955 | 0.800955 | 1.13E-48 | -1.69E-46 |
| MS.gene054408 | MS.gene070955 | 0.839349 | 1.67E-57 | -1.69E-46 |
| MS.gene054595 | MS.gene070955 | 0.820777 | 5.73E-53 | -1.69E-46 |
| MS.gene05470 | MS.gene070955 | 0.85737 | 1.71E-62 | -1.69E-46 |
| MS.gene05494 | MS.gene070955 | 0.809538 | 1.80E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene070955 | 0.842623 | 2.31E-58 | -1.69E-46 |
| MS.gene055224 | MS.gene070955 | 0.820453 | 6.80E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene070955 | 0.807838 | 4.16E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene070955 | 0.809588 | 1.76E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene070955 | 0.808606 | 2.85E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene070955 | 0.832946 | 7.07E-56 | -1.69E-46 |
| MS.gene055750 | MS.gene070955 | 0.849038 | 4.18E-60 | -1.69E-46 |
| MS.gene055751 | MS.gene070955 | 0.841803 | 3.81E-58 | -1.69E-46 |
| MS.gene055776 | MS.gene070955 | 0.811682 | 6.20E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene070955 | 0.908874 | 1.06E-81 | -1.69E-46 |
| MS.gene056046 | MS.gene070955 | 0.825313 | 5.02E-54 | -1.69E-46 |
| MS.gene056166 | MS.gene070955 | 0.826706 | 2.34E-54 | -1.69E-46 |
| MS.gene056387 | MS.gene070955 | 0.863933 | 1.75E-64 | -1.69E-46 |
| MS.gene056446 | MS.gene070955 | 0.826715 | 2.33E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene070955 | 0.889881 | 1.63E-73 | -1.69E-46 |
| MS.gene056510 | MS.gene070955 | 0.844117 | 9.22E-59 | -1.69E-46 |
| MS.gene056657 | MS.gene070955 | 0.806708 | 7.21E-50 | -1.69E-46 |
| MS.gene056692 | MS.gene070955 | 0.802148 | 6.44E-49 | -1.69E-46 |
| MS.gene057019 | MS.gene070955 | 0.804175 | 2.45E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene070955 | 0.813131 | 2.99E-51 | -1.69E-46 |
| MS.gene057086 | MS.gene070955 | 0.810716 | 1.00E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene070955 | 0.804559 | 2.04E-49 | -1.69E-46 |
| MS.gene057872 | MS.gene070955 | 0.826069 | 3.32E-54 | -1.69E-46 |
| MS.gene05787 | MS.gene070955 | 0.857305 | 1.79E-62 | -1.69E-46 |
| MS.gene058130 | MS.gene070955 | 0.807081 | 6.02E-50 | -1.69E-46 |
| MS.gene058157 | MS.gene070955 | 0.844608 | 6.80E-59 | -1.69E-46 |
| MS.gene058334 | MS.gene070955 | -0.80055 | 1.37E-48 | -1.69E-46 |
| MS.gene05837 | MS.gene070955 | 0.8493 | 3.53E-60 | -1.69E-46 |
| MS.gene058419 | MS.gene070955 | 0.8127 | 3.72E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene070955 | 0.823477 | 1.36E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene070955 | 0.82427 | 8.84E-54 | -1.69E-46 |
| MS.gene059023 | MS.gene070955 | 0.83133 | 1.77E-55 | -1.69E-46 |
| MS.gene059305 | MS.gene070955 | 0.800025 | 1.75E-48 | -1.69E-46 |
| MS.gene059667 | MS.gene070955 | 0.855309 | 6.88E-62 | -1.69E-46 |
| MS.gene059718 | MS.gene070955 | 0.805224 | 1.48E-49 | -1.69E-46 |
| MS.gene059837 | MS.gene070955 | 0.855938 | 4.51E-62 | -1.69E-46 |
| MS.gene059865 | MS.gene070955 | 0.869893 | 2.20E-66 | -1.69E-46 |
| MS.gene05995 | MS.gene070955 | 0.811308 | 7.47E-51 | -1.69E-46 |
| MS.gene05996 | MS.gene070955 | 0.819482 | 1.13E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene070955 | 0.889712 | 1.90E-73 | -1.69E-46 |
| MS.gene06027 | MS.gene070955 | 0.820553 | 6.46E-53 | -1.69E-46 |
| MS.gene060595 | MS.gene070955 | -0.832519 | 9.02E-56 | -1.69E-46 |
| MS.gene060703 | MS.gene070955 | 0.820668 | 6.07E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene070955 | 0.834073 | 3.70E-56 | -1.69E-46 |
| MS.gene060778 | MS.gene070955 | 0.900157 | 9.70E-78 | -1.69E-46 |
| MS.gene06077 | MS.gene070955 | 0.868547 | 6.02E-66 | -1.69E-46 |
| MS.gene06097 | MS.gene070955 | 0.823676 | 1.22E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene070955 | 0.889042 | 3.45E-73 | -1.69E-46 |
| MS.gene061044 | MS.gene070955 | -0.816524 | 5.29E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37702 | MS.gene070955 | PPI |
| MS.gene070955 | MS.gene34385 | PPI |
| MS.gene006404 | MS.gene070955 | PPI |
| MS.gene070955 | MS.gene070957 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070955.t1 | MTR_1g102890 | 97.778 | 180 | 4 | 0 | 1 | 180 | 8 | 187 | 6.68e-131 | 364 |
| MS.gene070955.t1 | MTR_1g102890 | 95.070 | 142 | 7 | 0 | 1 | 142 | 8 | 149 | 2.62e-98 | 281 |
| MS.gene070955.t1 | MTR_1g102870 | 67.442 | 172 | 56 | 0 | 1 | 172 | 18 | 189 | 4.20e-89 | 259 |
| MS.gene070955.t1 | MTR_1g102870 | 69.784 | 139 | 42 | 0 | 1 | 139 | 18 | 156 | 6.89e-73 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070955.t1 | AT5G43850 | 78.333 | 180 | 39 | 0 | 1 | 180 | 8 | 187 | 3.33e-105 | 300 |
| MS.gene070955.t1 | AT2G26400 | 66.092 | 174 | 59 | 0 | 1 | 174 | 33 | 206 | 1.88e-87 | 256 |
| MS.gene070955.t1 | AT4G14710 | 64.912 | 171 | 60 | 0 | 1 | 171 | 1 | 171 | 2.41e-87 | 254 |
| MS.gene070955.t1 | AT2G26400 | 66.092 | 174 | 59 | 0 | 1 | 174 | 18 | 191 | 2.61e-87 | 254 |
| MS.gene070955.t1 | AT4G14710 | 64.912 | 171 | 60 | 0 | 1 | 171 | 18 | 188 | 3.79e-87 | 254 |
| MS.gene070955.t1 | AT4G14710 | 64.912 | 171 | 60 | 0 | 1 | 171 | 18 | 188 | 3.79e-87 | 254 |
| MS.gene070955.t1 | AT4G14710 | 64.912 | 171 | 60 | 0 | 1 | 171 | 20 | 190 | 3.96e-87 | 254 |
| MS.gene070955.t1 | AT4G14716 | 65.663 | 166 | 57 | 0 | 1 | 166 | 1 | 166 | 9.30e-86 | 250 |
| MS.gene070955.t1 | AT4G14716 | 65.663 | 166 | 57 | 0 | 1 | 166 | 18 | 183 | 1.59e-85 | 250 |
| MS.gene070955.t1 | AT4G14710 | 64.535 | 172 | 60 | 1 | 1 | 171 | 18 | 189 | 2.74e-85 | 249 |
| MS.gene070955.t1 | AT2G26400 | 68.519 | 162 | 51 | 0 | 1 | 162 | 33 | 194 | 8.58e-85 | 249 |
| MS.gene070955.t1 | AT2G26400 | 68.519 | 162 | 51 | 0 | 1 | 162 | 18 | 179 | 9.53e-85 | 249 |
| MS.gene070955.t1 | AT4G14710 | 66.049 | 162 | 55 | 0 | 1 | 162 | 18 | 179 | 3.11e-84 | 246 |
Find 44 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAGAAAGGAATACATTA+AGG | 0.274694 | 1.4:-79568595 | MS.gene070955:CDS |
| TGATCATTCTCATAGTCATT+AGG | 0.279982 | 1.4:+79569812 | None:intergenic |
| GATCATTCTCATAGTCATTA+GGG | 0.297534 | 1.4:+79569813 | None:intergenic |
| GCAGTTAATGAGGTTGTTTA+TGG | 0.306900 | 1.4:-79568664 | MS.gene070955:intron |
| CCCCAATGAATTTGTTTCCT+TGG | 0.318267 | 1.4:-79569960 | MS.gene070955:CDS |
| TGTTCCACTTGCAGCTCATT+AGG | 0.322239 | 1.4:-79568553 | None:intergenic |
| ATGATTAATAACCTGCTAAT+TGG | 0.327623 | 1.4:+79569936 | None:intergenic |
| GTCCAAGGAAACAAATTCAT+TGG | 0.347689 | 1.4:+79569958 | None:intergenic |
| TAGAATTGGGAGTCTTATAC+TGG | 0.362640 | 1.4:-79569844 | MS.gene070955:CDS |
| TGAAGAGATTCGTTACTGTT+TGG | 0.363134 | 1.4:-79568996 | MS.gene070955:CDS |
| ACGATCGCTGGATTCGCATT+TGG | 0.379921 | 1.4:-79568940 | MS.gene070955:CDS |
| TCCAAGGAAACAAATTCATT+GGG | 0.393021 | 1.4:+79569959 | None:intergenic |
| TACCATGTAATTGTATCCTC+TGG | 0.413679 | 1.4:+79569766 | None:intergenic |
| TTAATGTATTCCTTTCTAGC+AGG | 0.416178 | 1.4:+79568597 | None:intergenic |
| CTGGATTCGCATTTGGATCA+AGG | 0.420712 | 1.4:-79568933 | MS.gene070955:CDS |
| CAGTTAATGAGGTTGTTTAT+GGG | 0.429331 | 1.4:-79568663 | MS.gene070955:CDS |
| GCTAGAAAGGAATACATTAA+GGG | 0.444455 | 1.4:-79568594 | MS.gene070955:CDS |
| GGAAGATAACCCTGCTAGAA+AGG | 0.448092 | 1.4:-79568607 | MS.gene070955:CDS |
| GTTTCCTTGGACCAATTAGC+AGG | 0.487915 | 1.4:-79569947 | MS.gene070955:intron |
| CTACACTGAGCACATTCATC+AGG | 0.491343 | 1.4:-79569020 | MS.gene070955:CDS |
| CGTTACTGTTTGGAGGGAAG+TGG | 0.493451 | 1.4:-79568986 | MS.gene070955:CDS |
| AAGGGCTTGACTGAGAAAAC+TGG | 0.495479 | 1.4:-79568576 | MS.gene070955:CDS |
| TAGCCATGGTGAGGAAGTCT+TGG | 0.507430 | 1.4:+79569983 | None:intergenic |
| AGAGATTCGTTACTGTTTGG+AGG | 0.508489 | 1.4:-79568993 | MS.gene070955:CDS |
| TAATGTATTCCTTTCTAGCA+GGG | 0.526328 | 1.4:+79568598 | None:intergenic |
| ATTCGCATTTGGATCAAGGC+TGG | 0.542481 | 1.4:-79568929 | MS.gene070955:CDS |
| AACCGATGGTAGATTCCTGC+TGG | 0.548643 | 1.4:+79568890 | None:intergenic |
| GGATTTACTTGATTTATGCC+CGG | 0.551505 | 1.4:-79569080 | MS.gene070955:CDS |
| CAAATTCATTGGGGTAGCCA+TGG | 0.553222 | 1.4:+79569969 | None:intergenic |
| GAGATTCGTTACTGTTTGGA+GGG | 0.561571 | 1.4:-79568992 | MS.gene070955:CDS |
| TACCAGCAGGAATCTACCAT+CGG | 0.565483 | 1.4:-79568892 | MS.gene070955:CDS |
| GAGGTTGTTTATGGGTGAGC+CGG | 0.570174 | 1.4:-79568655 | MS.gene070955:CDS |
| CTAGCAGGGTTATCTTCCTG+TGG | 0.575444 | 1.4:+79568612 | None:intergenic |
| CGATTATATGCTGTCCACAC+CGG | 0.591841 | 1.4:+79568636 | None:intergenic |
| CGACACAAATAACTATGTGA+AGG | 0.598188 | 1.4:-79568861 | MS.gene070955:intron |
| ATAACCTGCTAATTGGTCCA+AGG | 0.599536 | 1.4:+79569943 | None:intergenic |
| TTGTGTCGAGAGTGAACCGA+TGG | 0.605251 | 1.4:+79568876 | None:intergenic |
| TGTTTATGGGTGAGCCGGTG+TGG | 0.615047 | 1.4:-79568650 | MS.gene070955:CDS |
| GGGTCCTAATGAGCTGCAAG+TGG | 0.616526 | 1.4:+79568549 | None:intergenic |
| AGCCAGAGGATACAATTACA+TGG | 0.637470 | 1.4:-79569768 | MS.gene070955:intron |
| GACAGCATATAATCGACCAC+AGG | 0.646228 | 1.4:-79568628 | MS.gene070955:CDS |
| TCATTGGGGTAGCCATGGTG+AGG | 0.672207 | 1.4:+79569974 | None:intergenic |
| GATCCAAGACTTCCTCACCA+TGG | 0.679886 | 1.4:-79569986 | MS.gene070955:CDS |
| CCAAGGAAACAAATTCATTG+GGG | 0.686962 | 1.4:+79569960 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATCTAATATATTGTAAA+CGG | - | chr1.4:79568988-79569007 | MS.gene070955:CDS | 10.0% |
| !! | AATTAGTTGAAAATAACTTA+CGG | - | chr1.4:79569202-79569221 | MS.gene070955:intron | 15.0% |
| !!! | AATTGTAATTTTTGTAGAAT+TGG | - | chr1.4:79568700-79568719 | MS.gene070955:intron | 15.0% |
| !!! | ATTGTAATTTTTGTAGAATT+GGG | - | chr1.4:79568701-79568720 | MS.gene070955:intron | 15.0% |
| !! | ACATGTTATAAGATTAAAAC+AGG | - | chr1.4:79568950-79568969 | MS.gene070955:CDS | 20.0% |
| !! | TTACATCAACAAAAATTTGA+AGG | + | chr1.4:79569014-79569033 | None:intergenic | 20.0% |
| !! | TTTGTTGATGTAAATTTCTT+AGG | - | chr1.4:79569021-79569040 | MS.gene070955:CDS | 20.0% |
| !!! | ATTTTGATTGTACTAATTGA+AGG | - | chr1.4:79569374-79569393 | MS.gene070955:intron | 20.0% |
| !!! | TCATAATTTTCAACTTTTTC+CGG | + | chr1.4:79569500-79569519 | None:intergenic | 20.0% |
| !!! | TTTTGATTGTACTAATTGAA+GGG | - | chr1.4:79569375-79569394 | MS.gene070955:intron | 20.0% |
| ! | ACCTATAAATTTCTTGATCA+AGG | - | chr1.4:79569726-79569745 | MS.gene070955:intron | 25.0% |
| ! | ATAGCTTATGAAAACAACTT+TGG | + | chr1.4:79569233-79569252 | None:intergenic | 25.0% |
| ! | ATGATTAATAACCTGCTAAT+TGG | + | chr1.4:79568625-79568644 | None:intergenic | 25.0% |
| ! | ATTTCATCTTTCAAATGTTC+TGG | - | chr1.4:79569400-79569419 | MS.gene070955:intron | 25.0% |
| ! | GTACTATTTGAATATGTTGT+AGG | - | chr1.4:79569457-79569476 | MS.gene070955:intron | 25.0% |
| ! | TTGAAATTGATCAAGATTCA+AGG | - | chr1.4:79569812-79569831 | MS.gene070955:CDS | 25.0% |
| ! | TTGATCAAGAAATTTATAGG+TGG | + | chr1.4:79569727-79569746 | None:intergenic | 25.0% |
| ! | TTTATTGTGACACAAGTTTA+AGG | - | chr1.4:79568674-79568693 | MS.gene070955:intron | 25.0% |
| ! | TTTCATCTTTCAAATGTTCT+GGG | - | chr1.4:79569401-79569420 | MS.gene070955:intron | 25.0% |
| !! | AAGTTATCTTTGAGAGTTTA+TGG | - | chr1.4:79569178-79569197 | MS.gene070955:intron | 25.0% |
| !! | TTTCTAGTGATACAATTACA+TGG | - | chr1.4:79568877-79568896 | MS.gene070955:CDS | 25.0% |
| !!! | CATAATTTTCAACTTTTTCC+GGG | + | chr1.4:79569499-79569518 | None:intergenic | 25.0% |
| ATAAGTTGTTTACCTAACAG+TGG | + | chr1.4:79569075-79569094 | None:intergenic | 30.0% | |
| CAGTTAATGAGGTTGTTTAT+GGG | - | chr1.4:79569895-79569914 | MS.gene070955:intron | 30.0% | |
| GAGCTCAAATAAGTCAATTT+AGG | - | chr1.4:79569288-79569307 | MS.gene070955:intron | 30.0% | |
| GATCATTCTCATAGTCATTA+GGG | + | chr1.4:79568748-79568767 | None:intergenic | 30.0% | |
| GCCTTGATCAAGAAATTTAT+AGG | + | chr1.4:79569730-79569749 | None:intergenic | 30.0% | |
| GCTAGAAAGGAATACATTAA+GGG | - | chr1.4:79569964-79569983 | MS.gene070955:CDS | 30.0% | |
| GTACAATCAAAATGTTCAAC+AGG | + | chr1.4:79569367-79569386 | None:intergenic | 30.0% | |
| TCCAAGGAAACAAATTCATT+GGG | + | chr1.4:79568602-79568621 | None:intergenic | 30.0% | |
| TGATCATTCTCATAGTCATT+AGG | + | chr1.4:79568749-79568768 | None:intergenic | 30.0% | |
| TGCTAGAAAGGAATACATTA+AGG | - | chr1.4:79569963-79569982 | MS.gene070955:CDS | 30.0% | |
| TTACATGGTAAGATTGAAAG+TGG | - | chr1.4:79568892-79568911 | MS.gene070955:CDS | 30.0% | |
| ! | TAATGTATTCCTTTCTAGCA+GGG | + | chr1.4:79569963-79569982 | None:intergenic | 30.0% |
| ! | TTAATGTATTCCTTTCTAGC+AGG | + | chr1.4:79569964-79569983 | None:intergenic | 30.0% |
| !! | TTGATCAAGGCTTCATTTTT+GGG | - | chr1.4:79569739-79569758 | MS.gene070955:intron | 30.0% |
| !!! | GAAAGTGGATTTTTTCTTGT+GGG | - | chr1.4:79568907-79568926 | MS.gene070955:CDS | 30.0% |
| !!! | TGAAAGTGGATTTTTTCTTG+TGG | - | chr1.4:79568906-79568925 | MS.gene070955:CDS | 30.0% |
| AAAAACATTAGAGAAGCCAG+AGG | - | chr1.4:79568776-79568795 | MS.gene070955:intron | 35.0% | |
| ACTTATTTGAGCTCATCTAC+CGG | + | chr1.4:79569282-79569301 | None:intergenic | 35.0% | |
| CAAGATTCAAGGTGATATGT+TGG | - | chr1.4:79569823-79569842 | MS.gene070955:CDS | 35.0% | |
| CCAAGGAAACAAATTCATTG+GGG | + | chr1.4:79568601-79568620 | None:intergenic | 35.0% | |
| CGACACAAATAACTATGTGA+AGG | - | chr1.4:79569697-79569716 | MS.gene070955:intron | 35.0% | |
| GCAGTTAATGAGGTTGTTTA+TGG | - | chr1.4:79569894-79569913 | MS.gene070955:intron | 35.0% | |
| GGATTTACTTGATTTATGCC+CGG | - | chr1.4:79569478-79569497 | MS.gene070955:intron | 35.0% | |
| GTCCAAGGAAACAAATTCAT+TGG | + | chr1.4:79568603-79568622 | None:intergenic | 35.0% | |
| TAAGTATTTGCGAGACTGTT+CGG | + | chr1.4:79569257-79569276 | None:intergenic | 35.0% | |
| TACCATGTAATTGTATCCTC+TGG | + | chr1.4:79568795-79568814 | None:intergenic | 35.0% | |
| TGAAGAGATTCGTTACTGTT+TGG | - | chr1.4:79569562-79569581 | MS.gene070955:intron | 35.0% | |
| TTGTTCGATGCATATGTATG+TGG | - | chr1.4:79569865-79569884 | MS.gene070955:intron | 35.0% | |
| ! | CTTGATCAAGGCTTCATTTT+TGG | - | chr1.4:79569738-79569757 | MS.gene070955:intron | 35.0% |
| ! | GATCTTATCATTTTACCAGC+AGG | - | chr1.4:79569653-79569672 | MS.gene070955:intron | 35.0% |
| ! | TAGAATTGGGAGTCTTATAC+TGG | - | chr1.4:79568714-79568733 | MS.gene070955:intron | 35.0% |
| AGAGATTCGTTACTGTTTGG+AGG | - | chr1.4:79569565-79569584 | MS.gene070955:intron | 40.0% | |
| AGCCAGAGGATACAATTACA+TGG | - | chr1.4:79568790-79568809 | MS.gene070955:intron | 40.0% | |
| AGTCTCGCAAATACTTATGC+CGG | - | chr1.4:79569260-79569279 | MS.gene070955:intron | 40.0% | |
| ATAACCTGCTAATTGGTCCA+AGG | + | chr1.4:79568618-79568637 | None:intergenic | 40.0% | |
| GAGATTCGTTACTGTTTGGA+GGG | - | chr1.4:79569566-79569585 | MS.gene070955:intron | 40.0% | |
| ! | CCCCAATGAATTTGTTTCCT+TGG | - | chr1.4:79568598-79568617 | MS.gene070955:CDS | 40.0% |
| !!! | AAGGCTTCATTTTTGGGATG+TGG | - | chr1.4:79569745-79569764 | MS.gene070955:intron | 40.0% |
| !!! | GTGGTTTTGTGCAGTTAATG+AGG | - | chr1.4:79569884-79569903 | MS.gene070955:intron | 40.0% |
| AAGGGCTTGACTGAGAAAAC+TGG | - | chr1.4:79569982-79570001 | MS.gene070955:CDS | 45.0% | |
| ATTCGCATTTGGATCAAGGC+TGG | - | chr1.4:79569629-79569648 | MS.gene070955:intron | 45.0% | |
| CAAATTCATTGGGGTAGCCA+TGG | + | chr1.4:79568592-79568611 | None:intergenic | 45.0% | |
| CGATTATATGCTGTCCACAC+CGG | + | chr1.4:79569925-79569944 | None:intergenic | 45.0% | |
| CTACACTGAGCACATTCATC+AGG | - | chr1.4:79569538-79569557 | MS.gene070955:intron | 45.0% | |
| CTGGATTCGCATTTGGATCA+AGG | - | chr1.4:79569625-79569644 | MS.gene070955:intron | 45.0% | |
| GACAGCATATAATCGACCAC+AGG | - | chr1.4:79569930-79569949 | MS.gene070955:intron | 45.0% | |
| GGAAGATAACCCTGCTAGAA+AGG | - | chr1.4:79569951-79569970 | MS.gene070955:CDS | 45.0% | |
| GTTTCCTTGGACCAATTAGC+AGG | - | chr1.4:79568611-79568630 | MS.gene070955:CDS | 45.0% | |
| TACCAGCAGGAATCTACCAT+CGG | - | chr1.4:79569666-79569685 | MS.gene070955:intron | 45.0% | |
| TTCGAGACAAAAACGATCGC+TGG | - | chr1.4:79569606-79569625 | MS.gene070955:intron | 45.0% | |
| AACCGATGGTAGATTCCTGC+TGG | + | chr1.4:79569671-79569690 | None:intergenic | 50.0% | |
| ACGATCGCTGGATTCGCATT+TGG | - | chr1.4:79569618-79569637 | MS.gene070955:intron | 50.0% | |
| CGTTACTGTTTGGAGGGAAG+TGG | - | chr1.4:79569572-79569591 | MS.gene070955:intron | 50.0% | |
| CTAGCAGGGTTATCTTCCTG+TGG | + | chr1.4:79569949-79569968 | None:intergenic | 50.0% | |
| GAGGTTGTTTATGGGTGAGC+CGG | - | chr1.4:79569903-79569922 | MS.gene070955:intron | 50.0% | |
| GATCCAAGACTTCCTCACCA+TGG | - | chr1.4:79568572-79568591 | MS.gene070955:CDS | 50.0% | |
| TAGCCATGGTGAGGAAGTCT+TGG | + | chr1.4:79568578-79568597 | None:intergenic | 50.0% | |
| TTAGCAGCAACGCCACTGTT+AGG | - | chr1.4:79569060-79569079 | MS.gene070955:CDS | 50.0% | |
| TTGTGTCGAGAGTGAACCGA+TGG | + | chr1.4:79569685-79569704 | None:intergenic | 50.0% | |
| TCATTGGGGTAGCCATGGTG+AGG | + | chr1.4:79568587-79568606 | None:intergenic | 55.0% | |
| TGTTTATGGGTGAGCCGGTG+TGG | - | chr1.4:79569908-79569927 | MS.gene070955:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 79568554 | 79570026 | 79568554 | ID=MS.gene070955 |
| chr1.4 | mRNA | 79568554 | 79570026 | 79568554 | ID=MS.gene070955.t1;Parent=MS.gene070955 |
| chr1.4 | exon | 79569948 | 79570026 | 79569948 | ID=MS.gene070955.t1.exon1;Parent=MS.gene070955.t1 |
| chr1.4 | CDS | 79569948 | 79570026 | 79569948 | ID=cds.MS.gene070955.t1;Parent=MS.gene070955.t1 |
| chr1.4 | exon | 79569769 | 79569863 | 79569769 | ID=MS.gene070955.t1.exon2;Parent=MS.gene070955.t1 |
| chr1.4 | CDS | 79569769 | 79569863 | 79569769 | ID=cds.MS.gene070955.t1;Parent=MS.gene070955.t1 |
| chr1.4 | exon | 79568862 | 79569101 | 79568862 | ID=MS.gene070955.t1.exon3;Parent=MS.gene070955.t1 |
| chr1.4 | CDS | 79568862 | 79569101 | 79568862 | ID=cds.MS.gene070955.t1;Parent=MS.gene070955.t1 |
| chr1.4 | exon | 79568554 | 79568682 | 79568554 | ID=MS.gene070955.t1.exon4;Parent=MS.gene070955.t1 |
| chr1.4 | CDS | 79568554 | 79568682 | 79568554 | ID=cds.MS.gene070955.t1;Parent=MS.gene070955.t1 |
| Gene Sequence |
| Protein sequence |
