AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34385

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34385.t1 MTR_1g102870 97.500 200 5 0 1 200 1 200 6.98e-148 409
MS.gene34385.t1 MTR_1g102870 96.795 156 5 0 1 156 1 156 4.42e-112 317
MS.gene34385.t1 MTR_1g102890 65.169 178 62 0 12 189 2 179 4.87e-90 262
MS.gene34385.t1 MTR_1g102890 64.667 150 53 0 12 161 2 151 4.75e-74 221
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34385.t1 AT4G14710 81.026 195 36 1 6 200 6 199 2.43e-120 339
MS.gene34385.t1 AT4G14710 81.026 195 36 1 6 200 6 199 2.43e-120 339
MS.gene34385.t1 AT4G14710 80.928 194 36 1 7 200 9 201 1.57e-119 337
MS.gene34385.t1 AT4G14710 80.612 196 36 2 6 200 6 200 1.68e-118 335
MS.gene34385.t1 AT4G14716 83.516 182 30 0 6 187 6 187 9.63e-118 332
MS.gene34385.t1 AT4G14710 86.782 174 23 0 6 179 6 179 4.10e-116 328
MS.gene34385.t1 AT4G14710 80.874 183 34 1 18 200 1 182 3.44e-112 318
MS.gene34385.t1 AT2G26400 72.500 200 54 1 1 200 1 199 1.08e-111 317
MS.gene34385.t1 AT2G26400 72.500 200 54 1 1 200 16 214 1.34e-111 318
MS.gene34385.t1 AT4G14716 83.529 170 28 0 18 187 1 170 1.19e-109 311
MS.gene34385.t1 AT2G26400 77.095 179 41 0 1 179 16 194 7.08e-108 309
MS.gene34385.t1 AT2G26400 77.095 179 41 0 1 179 1 179 7.14e-108 308
MS.gene34385.t1 AT5G43850 67.978 178 57 0 12 189 2 179 1.23e-93 271

Find 46 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGCTCTGGATCTGTTTC+AGG 0.073924 1.2:+76566053 None:intergenic
TTGATCTTCTCTTCATAATT+TGG 0.180796 1.2:+76565713 None:intergenic
GTCTCATTGGATCAACTTGC+TGG 0.324867 1.2:-76566212 MS.gene34385:intron
TGGATCTGTTTCAGGGTTAT+CGG 0.326072 1.2:+76566061 None:intergenic
ACCTAAGGAGTTTGTCTCAT+TGG 0.331615 1.2:-76566225 MS.gene34385:CDS
CGATTGTATGGAGTCCAAAT+TGG 0.341557 1.2:+76564966 None:intergenic
AAGAGGAATAATACCTTGTT+GGG 0.350367 1.2:+76566932 None:intergenic
CTAGTTAAATCATACCTTGC+AGG 0.361998 1.2:+76564927 None:intergenic
AGTTCTTCAAGCATGGTATA+TGG 0.375494 1.2:-76566288 MS.gene34385:CDS
CAGATCTTGGAGTCCTTAGC+TGG 0.402181 1.2:-76566094 MS.gene34385:CDS
TCAGCTCTGGATCTGTTTCA+GGG 0.414532 1.2:+76566054 None:intergenic
CTCCTTAGGTTCTTTGTGAT+GGG 0.423729 1.2:+76566238 None:intergenic
AAAGAGGAATAATACCTTGT+TGG 0.425539 1.2:+76566931 None:intergenic
CGTTATTGTGTCGCTGGAAG+TGG 0.433261 1.2:-76565650 MS.gene34385:intron
ATGAGGCTTGGATTCGTGTA+TGG 0.439403 1.2:-76565518 MS.gene34385:CDS
TGATCATGTGGGCGATTGTA+TGG 0.456398 1.2:+76564954 None:intergenic
ACTCCTTAGGTTCTTTGTGA+TGG 0.457485 1.2:+76566237 None:intergenic
TGCTTGAAGAACTTCCTCTC+GGG 0.472007 1.2:+76566298 None:intergenic
TTTAGGTTACTTTGATGTGA+GGG 0.488786 1.2:-76565547 MS.gene34385:intron
TGCTCTCATCCAATGTAAAA+CGG 0.492747 1.2:+76565451 None:intergenic
GAGATCCGTTATTGTGTCGC+TGG 0.505951 1.2:-76565656 MS.gene34385:CDS
TGAGGGATCGCAATGAGGCT+TGG 0.507939 1.2:-76565530 MS.gene34385:CDS
CACTTCCAGCGACACAATAA+CGG 0.513919 1.2:+76565651 None:intergenic
CTTTAGGTTACTTTGATGTG+AGG 0.517016 1.2:-76565548 MS.gene34385:intron
AGAACGTGGTTACTCTTACA+TGG 0.526887 1.2:-76566018 MS.gene34385:intron
CGTGTATGGGTGAAGAAAGG+AGG 0.536845 1.2:-76565504 MS.gene34385:CDS
TGAGGCTTGGATTCGTGTAT+GGG 0.561379 1.2:-76565517 MS.gene34385:CDS
TCCAATGAGACAAACTCCTT+AGG 0.562972 1.2:+76566224 None:intergenic
GGATGAGAGCAATTATATCA+AGG 0.565499 1.2:-76565439 MS.gene34385:intron
ATTCGTGTATGGGTGAAGAA+AGG 0.567203 1.2:-76565507 MS.gene34385:CDS
TCCCCATCACAAAGAACCTA+AGG 0.567435 1.2:-76566240 MS.gene34385:CDS
AAACGGTGATAAATTCCAGC+AGG 0.574056 1.2:+76565468 None:intergenic
CGGCATCTAACTTCCAGCTA+AGG 0.574902 1.2:+76566081 None:intergenic
ATGCTTGAAGAACTTCCTCT+CGG 0.577106 1.2:+76566297 None:intergenic
TCCTTAGGTTCTTTGTGATG+GGG 0.584649 1.2:+76566239 None:intergenic
GAGAGGAAGTTCTTCAAGCA+TGG 0.603425 1.2:-76566295 MS.gene34385:CDS
AGAGGAATAATACCTTGTTG+GGG 0.604563 1.2:+76566933 None:intergenic
CACATGATCATCTTCCTGCA+AGG 0.620106 1.2:-76564941 MS.gene34385:intron
GCTTGAAGAACTTCCTCTCG+GGG 0.627432 1.2:+76566299 None:intergenic
AGAGCATCTGCATACTGATG+AGG 0.635012 1.2:-76565678 MS.gene34385:CDS
AAGCAGTGGCGTCAACAGCA+TGG 0.641418 1.2:+76564787 None:intergenic
CTTGCAGGAAGATGATCATG+TGG 0.641989 1.2:+76564942 None:intergenic
TGATGTGAGGGATCGCAATG+AGG 0.643923 1.2:-76565535 MS.gene34385:CDS
GCAGAATCAATCTTAAGCAG+TGG 0.655901 1.2:+76564773 None:intergenic
GAGGAATAATACCTTGTTGG+GGG 0.678049 1.2:+76566934 None:intergenic
TTGCAGGAAGATGATCATGT+GGG 0.692332 1.2:+76564943 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACATAATTATTTTTCA+GGG + chr1.2:76564893-76564912 None:intergenic 10.0%
!! TAACATTCAAAACTATTTAT+GGG - chr1.2:76565855-76565874 MS.gene34385:intron 15.0%
!! TCAATTATAACAAATGTATT+TGG + chr1.2:76565065-76565084 None:intergenic 15.0%
!!! AAGTTTTAAATGTTTTAGAA+GGG - chr1.2:76565260-76565279 MS.gene34385:intron 15.0%
!!! CAAAAACATAATTATTTTTC+AGG + chr1.2:76564894-76564913 None:intergenic 15.0%
!!! TAAGTTTTAAATGTTTTAGA+AGG - chr1.2:76565259-76565278 MS.gene34385:intron 15.0%
!!! TTTTTTGTGATTAATTTGTT+AGG - chr1.2:76565150-76565169 MS.gene34385:intron 15.0%
!! AAAGAAAAACAGGAAATATT+TGG + chr1.2:76566162-76566181 None:intergenic 20.0%
!! ACAGAAAAATTATAAGCTAA+GGG + chr1.2:76566381-76566400 None:intergenic 20.0%
!! AGCTAAAAGATAACAAAAAT+AGG + chr1.2:76566620-76566639 None:intergenic 20.0%
!! ATATTCATATGCTAATTGTA+GGG - chr1.2:76565563-76565582 MS.gene34385:intron 20.0%
!! CATTGAATAACTAATGTATA+TGG - chr1.2:76565026-76565045 MS.gene34385:intron 20.0%
!! GAAACTTAAAATTATCAACA+TGG + chr1.2:76564968-76564987 None:intergenic 20.0%
!! GTAACATTCAAAACTATTTA+TGG - chr1.2:76565854-76565873 MS.gene34385:intron 20.0%
!! GTTTAATAAAAAATACGTGA+AGG + chr1.2:76566508-76566527 None:intergenic 20.0%
!! TATATTCATATGCTAATTGT+AGG - chr1.2:76565562-76565581 MS.gene34385:intron 20.0%
!! TTGAATATATGTTAAGATGA+AGG - chr1.2:76566567-76566586 MS.gene34385:intron 20.0%
!!! AAATATTTGGTAACTTAACA+GGG + chr1.2:76566149-76566168 None:intergenic 20.0%
!!! AATATTTCCTGTTTTTCTTT+AGG - chr1.2:76566162-76566181 MS.gene34385:intron 20.0%
!!! CGTATTTTTTATTAAACACA+AGG - chr1.2:76566511-76566530 MS.gene34385:intron 20.0%
!!! TACATAATAGGGTTTTATAT+AGG - chr1.2:76565123-76565142 MS.gene34385:intron 20.0%
! AAAGTAACCTAAAGAAAAAC+AGG + chr1.2:76566172-76566191 None:intergenic 25.0%
! AAGCTAAAGTTATCAGAAAT+TGG + chr1.2:76566413-76566432 None:intergenic 25.0%
! AGCTAAAGTTATCAGAAATT+GGG + chr1.2:76566412-76566431 None:intergenic 25.0%
! AGCTAAGAAAATGGTATAAT+CGG + chr1.2:76564839-76564858 None:intergenic 25.0%
! AGGAATCTACATACATAATA+GGG - chr1.2:76565112-76565131 MS.gene34385:intron 25.0%
! GACAGAAAAATTATAAGCTA+AGG + chr1.2:76566382-76566401 None:intergenic 25.0%
! GTGAATTAAAGCTAAGAAAA+TGG + chr1.2:76564848-76564867 None:intergenic 25.0%
! TAGGAATCTACATACATAAT+AGG - chr1.2:76565111-76565130 MS.gene34385:intron 25.0%
! TTGATCTTCTCTTCATAATT+TGG + chr1.2:76566016-76566035 None:intergenic 25.0%
!! AATTTATCACCGTTTTACAT+TGG - chr1.2:76566266-76566285 MS.gene34385:CDS 25.0%
!! GAAATATTTGGTAACTTAAC+AGG + chr1.2:76566150-76566169 None:intergenic 25.0%
!!! AGTTAAGTTGAAATAGCTTA+TGG + chr1.2:76564933-76564952 None:intergenic 25.0%
!!! CATAATTTGGTAACTTTTCT+GGG + chr1.2:76566003-76566022 None:intergenic 25.0%
!!! TAACTTTAGCTTTTGAACTT+TGG - chr1.2:76566421-76566440 MS.gene34385:intron 25.0%
!!! TCATAATTTGGTAACTTTTC+TGG + chr1.2:76566004-76566023 None:intergenic 25.0%
!!! TGATTAATTTGTTAGGAGTA+GGG - chr1.2:76565157-76565176 MS.gene34385:intron 25.0%
AAAGAGGAATAATACCTTGT+TGG + chr1.2:76564798-76564817 None:intergenic 30.0%
AAGAGGAATAATACCTTGTT+GGG + chr1.2:76564797-76564816 None:intergenic 30.0%
AGTAATTAGCAGTAGCATAT+GGG - chr1.2:76566825-76566844 MS.gene34385:intron 30.0%
GCACATGATATAAACAAGAT+TGG + chr1.2:76565292-76565311 None:intergenic 30.0%
TAGTAATTAGCAGTAGCATA+TGG - chr1.2:76566824-76566843 MS.gene34385:intron 30.0%
TTCGCATATGCATGTTTATT+TGG + chr1.2:76565791-76565810 None:intergenic 30.0%
TTGCATGATTCTAATTATGC+AGG - chr1.2:76566714-76566733 MS.gene34385:intron 30.0%
! GCAATATATCAAGACTTTTG+TGG - chr1.2:76566900-76566919 MS.gene34385:intron 30.0%
! TGATTTTCTATTAGCAACAG+AGG + chr1.2:76566352-76566371 None:intergenic 30.0%
! TTTAGGTTACTTTGATGTGA+GGG - chr1.2:76566179-76566198 MS.gene34385:intron 30.0%
!! ATGTCTGCATTTTAACATTC+CGG - chr1.2:76565913-76565932 MS.gene34385:intron 30.0%
!! ATTAATTTGTTAGGAGTAGG+GGG - chr1.2:76565159-76565178 MS.gene34385:intron 30.0%
!! CTTCCTATCATTTTTATCTG+AGG - chr1.2:76565946-76565965 MS.gene34385:intron 30.0%
!! GATTAATTTGTTAGGAGTAG+GGG - chr1.2:76565158-76565177 MS.gene34385:intron 30.0%
!! GTGATTAATTTGTTAGGAGT+AGG - chr1.2:76565156-76565175 MS.gene34385:intron 30.0%
!! TTACATTTTGTGTTGTTGAG+AGG - chr1.2:76565355-76565374 MS.gene34385:intron 30.0%
!!! ATTTTTCAGGGAAAAGAAGA+AGG + chr1.2:76564881-76564900 None:intergenic 30.0%
!!! TTTCATACGTCGTTTTTCAT+AGG - chr1.2:76565402-76565421 MS.gene34385:intron 30.0%
!!! TTTTTCAGGGAAAAGAAGAA+GGG + chr1.2:76564880-76564899 None:intergenic 30.0%
AAAAAGATTCGTGAAGAACG+TGG - chr1.2:76565694-76565713 MS.gene34385:CDS 35.0%
AAAATGAACGAGAGGTAAAG+AGG + chr1.2:76564814-76564833 None:intergenic 35.0%
AATCGGAAAAAATGAACGAG+AGG + chr1.2:76564822-76564841 None:intergenic 35.0%
AGAGGAATAATACCTTGTTG+GGG + chr1.2:76564796-76564815 None:intergenic 35.0%
AGTTCTTCAAGCATGGTATA+TGG - chr1.2:76565438-76565457 MS.gene34385:intron 35.0%
CATTTGACGTCAAAACGAAA+AGG + chr1.2:76565896-76565915 None:intergenic 35.0%
CGTGTTAATATTGCAGATCT+TGG - chr1.2:76565619-76565638 MS.gene34385:intron 35.0%
CTAGTTAAATCATACCTTGC+AGG + chr1.2:76566802-76566821 None:intergenic 35.0%
GAGACTGTAATTAGTGAGTT+GGG - chr1.2:76565083-76565102 MS.gene34385:intron 35.0%
GAGGTTCGACATAAATTATC+TGG + chr1.2:76566855-76566874 None:intergenic 35.0%
GGATGAGAGCAATTATATCA+AGG - chr1.2:76566287-76566306 MS.gene34385:CDS 35.0%
GTGCCTCAGATAAAAATGAT+AGG + chr1.2:76565952-76565971 None:intergenic 35.0%
TGAGACTGTAATTAGTGAGT+TGG - chr1.2:76565082-76565101 MS.gene34385:intron 35.0%
TGAGAGGTTGTAGAAATAAG+AGG - chr1.2:76565371-76565390 MS.gene34385:intron 35.0%
TGCTCTCATCCAATGTAAAA+CGG + chr1.2:76566278-76566297 None:intergenic 35.0%
! ATTAGTGAGTTGGGTTTGAT+AGG - chr1.2:76565092-76565111 MS.gene34385:intron 35.0%
! ATTTGGTAACTTAACAGGGT+AGG + chr1.2:76566145-76566164 None:intergenic 35.0%
! CTTTAGGTTACTTTGATGTG+AGG - chr1.2:76566178-76566197 MS.gene34385:intron 35.0%
! GCATGTTTATTTGGAGTAGT+GGG + chr1.2:76565782-76565801 None:intergenic 35.0%
! GGATGTGATTGCAAAGATTT+TGG - chr1.2:76566532-76566551 MS.gene34385:intron 35.0%
! TATCAAGACTTTTGTGGAGA+AGG - chr1.2:76566906-76566925 MS.gene34385:intron 35.0%
! TGCATGTTTATTTGGAGTAG+TGG + chr1.2:76565783-76565802 None:intergenic 35.0%
! TTCGATAAAGCACTTGTACA+TGG + chr1.2:76565228-76565247 None:intergenic 35.0%
! TTTATTTGGAGTAGTGGGAA+AGG + chr1.2:76565777-76565796 None:intergenic 35.0%
!! AGGGGGATTGATTTGTATTA+GGG - chr1.2:76565176-76565195 MS.gene34385:intron 35.0%
!! TAGGGGGATTGATTTGTATT+AGG - chr1.2:76565175-76565194 MS.gene34385:intron 35.0%
!! TTTTTGTTGGTGAGCCAATT+TGG - chr1.2:76566746-76566765 MS.gene34385:intron 35.0%
AAACGGTGATAAATTCCAGC+AGG + chr1.2:76566261-76566280 None:intergenic 40.0%
ACCTAAGGAGTTTGTCTCAT+TGG - chr1.2:76565501-76565520 MS.gene34385:CDS 40.0%
ACTCCTTAGGTTCTTTGTGA+TGG + chr1.2:76565492-76565511 None:intergenic 40.0%
AGAACGTGGTTACTCTTACA+TGG - chr1.2:76565708-76565727 MS.gene34385:CDS 40.0%
AGTAGCAGTAGGCATCTTAT+TGG + chr1.2:76565328-76565347 None:intergenic 40.0%
ATGCTTGAAGAACTTCCTCT+CGG + chr1.2:76565432-76565451 None:intergenic 40.0%
ATTCGTGTATGGGTGAAGAA+AGG - chr1.2:76566219-76566238 MS.gene34385:CDS 40.0%
CACAACAGGACTTCCAAAAA+GGG + chr1.2:76566478-76566497 None:intergenic 40.0%
CGATTGTATGGAGTCCAAAT+TGG + chr1.2:76566763-76566782 None:intergenic 40.0%
CGCATTGAAATCGCATTATG+AGG + chr1.2:76566874-76566893 None:intergenic 40.0%
CTCCTTAGGTTCTTTGTGAT+GGG + chr1.2:76565491-76565510 None:intergenic 40.0%
GAGGAATAATACCTTGTTGG+GGG + chr1.2:76564795-76564814 None:intergenic 40.0%
GTAGCAGTAGGCATCTTATT+GGG + chr1.2:76565327-76565346 None:intergenic 40.0%
TCCAATGAGACAAACTCCTT+AGG + chr1.2:76565505-76565524 None:intergenic 40.0%
TCCTTAGGTTCTTTGTGATG+GGG + chr1.2:76565490-76565509 None:intergenic 40.0%
TGGATAACAGACTACGAAGT+TGG + chr1.2:76565208-76565227 None:intergenic 40.0%
TGGATCTGTTTCAGGGTTAT+CGG + chr1.2:76565668-76565687 None:intergenic 40.0%
TTGCAGGAAGATGATCATGT+GGG + chr1.2:76566786-76566805 None:intergenic 40.0%
! GGAATGATCATTTTACCTGC+TGG - chr1.2:76566243-76566262 MS.gene34385:CDS 40.0%
! TTTTCTGCAGGATGTTTGTG+AGG - chr1.2:76565973-76565992 MS.gene34385:intron 40.0%
!!! CAGGCATTGCGATTTTTTGT+TGG - chr1.2:76566733-76566752 MS.gene34385:intron 40.0%
!!! TCACGAATCTTTTTCAGCTC+TGG + chr1.2:76565688-76565707 None:intergenic 40.0%
AATGCGATTTCAATGCGCAG+AGG - chr1.2:76566877-76566896 MS.gene34385:intron 45.0%
ATGAGGCTTGGATTCGTGTA+TGG - chr1.2:76566208-76566227 MS.gene34385:intron 45.0%
ATGCGATTTCAATGCGCAGA+GGG - chr1.2:76566878-76566897 MS.gene34385:intron 45.0%
CACATGATCATCTTCCTGCA+AGG - chr1.2:76566785-76566804 MS.gene34385:intron 45.0%
CACTTCCAGCGACACAATAA+CGG + chr1.2:76566078-76566097 None:intergenic 45.0%
CTTGCAGGAAGATGATCATG+TGG + chr1.2:76566787-76566806 None:intergenic 45.0%
GAGAGGAAGTTCTTCAAGCA+TGG - chr1.2:76565431-76565450 MS.gene34385:intron 45.0%
GCACAACAGGACTTCCAAAA+AGG + chr1.2:76566479-76566498 None:intergenic 45.0%
GTAACAGCAACAGTAGCAGT+AGG + chr1.2:76565339-76565358 None:intergenic 45.0%
GTAACTTAACAGGGTAGGCA+TGG + chr1.2:76566140-76566159 None:intergenic 45.0%
GTCTCATTGGATCAACTTGC+TGG - chr1.2:76565514-76565533 MS.gene34385:CDS 45.0%
TCCCCATCACAAAGAACCTA+AGG - chr1.2:76565486-76565505 MS.gene34385:CDS 45.0%
TGAGGCTTGGATTCGTGTAT+GGG - chr1.2:76566209-76566228 MS.gene34385:intron 45.0%
TGATCATGTGGGCGATTGTA+TGG + chr1.2:76566775-76566794 None:intergenic 45.0%
TGCTTGAAGAACTTCCTCTC+GGG + chr1.2:76565431-76565450 None:intergenic 45.0%
! AGAGCATCTGCATACTGATG+AGG - chr1.2:76566048-76566067 MS.gene34385:CDS 45.0%
! GATAGGAAGCATGACATAGC+CGG + chr1.2:76565935-76565954 None:intergenic 45.0%
! TTTTTCATAGGATCCCCGAG+AGG - chr1.2:76565414-76565433 MS.gene34385:intron 45.0%
!! ATCTGAGGCACATTTTCTGC+AGG - chr1.2:76565961-76565980 MS.gene34385:intron 45.0%
!! TCAGCTCTGGATCTGTTTCA+GGG + chr1.2:76565675-76565694 None:intergenic 45.0%
!! TTCAGCTCTGGATCTGTTTC+AGG + chr1.2:76565676-76565695 None:intergenic 45.0%
CAGATCTTGGAGTCCTTAGC+TGG - chr1.2:76565632-76565651 MS.gene34385:intron 50.0%
CAGGACTTCCAAAAAGGGCA+CGG + chr1.2:76566473-76566492 None:intergenic 50.0%
CGGCATCTAACTTCCAGCTA+AGG + chr1.2:76565648-76565667 None:intergenic 50.0%
CGTGTATGGGTGAAGAAAGG+AGG - chr1.2:76566222-76566241 MS.gene34385:CDS 50.0%
GAGATCCGTTATTGTGTCGC+TGG - chr1.2:76566070-76566089 MS.gene34385:CDS 50.0%
GCTTGAAGAACTTCCTCTCG+GGG + chr1.2:76565430-76565449 None:intergenic 50.0%
TGATGTGAGGGATCGCAATG+AGG - chr1.2:76566191-76566210 MS.gene34385:intron 50.0%
! ACATTGTCCCGTGCCCTTTT+TGG - chr1.2:76566462-76566481 MS.gene34385:intron 50.0%
! AGGACTTCCAAAAAGGGCAC+GGG + chr1.2:76566472-76566491 None:intergenic 50.0%
! CGTTATTGTGTCGCTGGAAG+TGG - chr1.2:76566076-76566095 MS.gene34385:CDS 50.0%
AAGCAGTGGCGTCAACAGCA+TGG + chr1.2:76566942-76566961 None:intergenic 55.0%
GTGAAGGTCAGACGCACAAC+AGG + chr1.2:76566492-76566511 None:intergenic 55.0%
TGAGGGATCGCAATGAGGCT+TGG - chr1.2:76566196-76566215 MS.gene34385:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 76564785 76566963 76564785 ID=MS.gene34385
chr1.2 mRNA 76564785 76566963 76564785 ID=MS.gene34385.t1;Parent=MS.gene34385
chr1.2 exon 76566946 76566963 76566946 ID=MS.gene34385.t1.exon1;Parent=MS.gene34385.t1
chr1.2 CDS 76566946 76566963 76566946 ID=cds.MS.gene34385.t1;Parent=MS.gene34385.t1
chr1.2 exon 76566213 76566324 76566213 ID=MS.gene34385.t1.exon2;Parent=MS.gene34385.t1
chr1.2 CDS 76566213 76566324 76566213 ID=cds.MS.gene34385.t1;Parent=MS.gene34385.t1
chr1.2 exon 76566019 76566113 76566019 ID=MS.gene34385.t1.exon3;Parent=MS.gene34385.t1
chr1.2 CDS 76566019 76566113 76566019 ID=cds.MS.gene34385.t1;Parent=MS.gene34385.t1
chr1.2 exon 76565651 76565765 76565651 ID=MS.gene34385.t1.exon4;Parent=MS.gene34385.t1
chr1.2 CDS 76565651 76565765 76565651 ID=cds.MS.gene34385.t1;Parent=MS.gene34385.t1
chr1.2 exon 76565440 76565564 76565440 ID=MS.gene34385.t1.exon5;Parent=MS.gene34385.t1
chr1.2 CDS 76565440 76565564 76565440 ID=cds.MS.gene34385.t1;Parent=MS.gene34385.t1
chr1.2 exon 76564942 76565012 76564942 ID=MS.gene34385.t1.exon6;Parent=MS.gene34385.t1
chr1.2 CDS 76564942 76565012 76564942 ID=cds.MS.gene34385.t1;Parent=MS.gene34385.t1
chr1.2 exon 76564785 76564851 76564785 ID=MS.gene34385.t1.exon7;Parent=MS.gene34385.t1
chr1.2 CDS 76564785 76564851 76564785 ID=cds.MS.gene34385.t1;Parent=MS.gene34385.t1
Gene Sequence

>MS.gene34385

ATGGTTTCCCCCAACAAGGTATTATTCCTCTTTACCTCTCGTTCATTTTTTCCGATTATACCATTTTCTTAGCTTTAATTCACAAAATTATACCCTTCTTCTTTTCCCTGAAAAATAATTATGTTTTTGTTAATGAATGTTTGTACCATAAGCTATTTCAACTTAACTGCTATCGTTTCTCCATGTTGATAATTTTAAGTTTCTCAAAGAAAATCATAAGCAAAAAATTACTTTTTAGATTCATTGAATAACTAATGTATATGGTCTGAAATATAGACCAAATACATTTGTTATAATTGAGACTGTAATTAGTGAGTTGGGTTTGATAGGAATCTACATACATAATAGGGTTTTATATAGGCAAATTTTTTGTGATTAATTTGTTAGGAGTAGGGGGATTGATTTGTATTAGGGTTCGTTCCAACTTCGTAGTCTGTTATCCATGTACAAGTGCTTTATCGAAATCTTAATCGTTAAGTTTTAAATGTTTTAGAAGGGTTATATCCAATCTTGTTTATATCATGTGCTCAAATTGCTTGCCCAATAAGATGCCTACTGCTACTGTTGCTGTTACATTTTGTGTTGTTGAGAGGTTGTAGAAATAAGAGGAATCATATTTTCATACGTCGTTTTTCATAGGATCCCCGAGAGGAAGTTCTTCAAGCATGGTATATGGATGATAGCAATGAAGATCAAAGACTTCCCCATCACAAAGAACCTAAGGAGTTTGTCTCATTGGATCAACTTGCTGGTAAGCTTCTTGTTGCATGTGTTAGTTATATTCATATGCTAATTGTAGGGTTTGTGCTCACTAGTCACGTCTGAACTTTGACTCGTGTTAATATTGCAGATCTTGGAGTCCTTAGCTGGAAGTTAGATGCCGATAACCCTGAAACAGATCCAGAGCTGAAAAAGATTCGTGAAGAACGTGGTTACTCTTACATGGTTAGTGATGCTAATGTTTTATTGTCATTGTTTAGATAGAACTACCTTTCCCACTACTCCAAATAAACATGCATATGCGAAGAAATATAAAAATATATGTAAAATCACTGCTGCTTAATTATATGTAACATTCAAAACTATTTATGGGAAGTCTAACTTTTATCCTTTTCGTTTTGACGTCAAATGTCTGCATTTTAACATTCCGGCTATGTCATGCTTCCTATCATTTTTATCTGAGGCACATTTTCTGCAGGATGTTTGTGAGGTCTGCCCAGAAAAGTTACCAAATTATGAAGAGAAGATCAAGAACTTCTTTGAAGAGCATCTGCATACTGATGAGGAGATCCGTTATTGTGTCGCTGGAAGTGGTATGAACAGATTTCTCATTTGATCTGATTTTCTCGTTACCATGCCTACCCTGTTAAGTTACCAAATATTTCCTGTTTTTCTTTAGGTTACTTTGATGTGAGGGATCGCAATGAGGCTTGGATTCGTGTATGGGTGAAGAAAGGAGGAATGATCATTTTACCTGCTGGAATTTATCACCGTTTTACATTGGATGAGAGCAATTATATCAAGGTATTGATTGCATATTTGCAAATTGTAGCTATACAACTTTCCTCTGTTGCTAATAGAAAATCACTATGTCCCTTAGCTTATAATTTTTCTGTCAATCAGTCCCAATTTCTGATAACTTTAGCTTTTGAACTTTGGTTCTTTGAATACTTTAAAACATTGTCCCGTGCCCTTTTTGGAAGTCCTGTTGTGCGTCTGACCTTCACGTATTTTTTATTAAACACAAGGATGTGATTGCAAAGATTTTGGTTAGTTGCATTCTTGAATATATGTTAAGATGAAGGTTAAACTTTGACGTGACATACTGCAAGCCTATTTTTGTTATCTTTTAGCTGTTGATATCTATCTTCAACTTTTTTTTTTTTTATCTTAACATTTGCTGAGATTAGTTTACTTCATTCGTGTTTCTTGCATGATTCTAATTATGCAGGCATTGCGATTTTTTGTTGGTGAGCCAATTTGGACTCCATACAATCGCCCACATGATCATCTTCCTGCAAGGTATGATTTAACTAGTTTAGTAATTAGCAGTAGCATATGGGACAACCAGATAATTTATGTCGAACCTCATAATGCGATTTCAATGCGCAGAGGGCAATATATCAAGACTTTTGTGGAGAAGGATGTTGCTAACCATGCTGTTGACGCCACTGCTTAA
Protein sequence

>MS.gene34385.t1

MVSPNKDPREEVLQAWYMDDSNEDQRLPHHKEPKEFVSLDQLADLGVLSWKLDADNPETDPELKKIREERGYSYMDVCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEAWIRVWVKKGGMIILPAGIYHRFTLDESNYIKALRFFVGEPIWTPYNRPHDHLPARGQYIKTFVEKDVANHAVDATA