AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37702

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37702.t1 MTR_1g102870 85.217 230 4 1 17 246 1 200 4.54e-142 396
MS.gene37702.t1 MTR_1g102870 97.436 156 4 0 17 172 1 156 2.06e-112 320
MS.gene37702.t1 MTR_1g102890 66.667 168 56 0 28 195 2 169 2.25e-86 254
MS.gene37702.t1 MTR_1g102890 65.333 150 52 0 28 177 2 151 3.44e-74 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37702.t1 AT4G14710 87.356 174 22 0 22 195 6 179 7.38e-117 332
MS.gene37702.t1 AT4G14710 87.356 174 22 0 22 195 6 179 7.38e-117 332
MS.gene37702.t1 AT4G14710 87.356 174 22 0 22 195 6 179 1.26e-116 331
MS.gene37702.t1 AT4G14710 87.283 173 22 0 23 195 9 181 4.52e-116 330
MS.gene37702.t1 AT4G14716 80.628 191 36 1 17 206 1 191 1.20e-115 329
MS.gene37702.t1 AT4G14710 86.857 175 22 1 22 195 6 180 4.26e-115 328
MS.gene37702.t1 AT2G26400 71.429 203 56 1 15 215 14 216 7.52e-112 321
MS.gene37702.t1 AT2G26400 67.123 219 67 2 17 233 1 216 2.58e-111 319
MS.gene37702.t1 AT4G14710 87.654 162 20 0 34 195 1 162 1.03e-108 311
MS.gene37702.t1 AT2G26400 77.348 181 41 0 15 195 14 194 2.10e-108 311
MS.gene37702.t1 AT2G26400 77.654 179 40 0 17 195 1 179 7.70e-108 310
MS.gene37702.t1 AT4G14716 82.184 174 30 1 34 206 1 174 1.75e-107 308
MS.gene37702.t1 AT5G43850 70.833 168 49 0 28 195 2 169 7.46e-92 268

Find 55 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGCTCTGGATCTGTTTC+AGG 0.073924 1.1:+73828576 None:intergenic
TTGATCTTCTCTTCATAATT+TGG 0.180796 1.1:+73828236 None:intergenic
GGATGAGAGCAATTATATTA+AGG 0.311003 1.1:-73827962 MS.gene37702:intron
GTCTCATTGGATCAACTTGC+TGG 0.324867 1.1:-73828737 MS.gene37702:intron
TGGATCTGTTTCAGGGTTAT+CGG 0.326072 1.1:+73828584 None:intergenic
ACCTAAGGAGTTTGTCTCAT+TGG 0.331615 1.1:-73828750 MS.gene37702:CDS
GAGGTTCGACATAAATTATC+TGG 0.340426 1.1:+73827394 None:intergenic
CGATTGTATGGAGTCCAAAT+TGG 0.341557 1.1:+73827486 None:intergenic
AAGAGGAATAATACCTTGTT+GGG 0.350367 1.1:+73829530 None:intergenic
CTAGTTAAATCATACCTTGC+AGG 0.361998 1.1:+73827447 None:intergenic
AGTTCTTCAAGCATGGTATA+TGG 0.375494 1.1:-73828813 MS.gene37702:CDS
TAGTAATTAGCAGTAGCATA+TGG 0.383176 1.1:-73827422 MS.gene37702:CDS
CGCATTGAAATCGCATTATG+AGG 0.393613 1.1:+73827375 None:intergenic
CCATGATGATGTTTAAGCTT+CGG 0.400360 1.1:+73829558 None:intergenic
CAGAACTTGGAGTCCTTAGC+TGG 0.402181 1.1:-73828617 MS.gene37702:CDS
TCAGCTCTGGATCTGTTTCA+GGG 0.414532 1.1:+73828577 None:intergenic
CTCCTTAGGTTCTTTGTGAT+GGG 0.423729 1.1:+73828763 None:intergenic
AAAGAGGAATAATACCTTGT+TGG 0.425539 1.1:+73829529 None:intergenic
CGTTATTGTGTCGCTGGAAG+TGG 0.433261 1.1:-73828173 MS.gene37702:intron
ATGAGGCTTGGATTCGTGTA+TGG 0.439403 1.1:-73828041 MS.gene37702:CDS
TGATCATGTGGGCGATTGTA+TGG 0.456398 1.1:+73827474 None:intergenic
ACTCCTTAGGTTCTTTGTGA+TGG 0.457485 1.1:+73828762 None:intergenic
TGCTTGAAGAACTTCCTCTC+GGG 0.472007 1.1:+73828823 None:intergenic
AGTAATTAGCAGTAGCATAT+GGG 0.477572 1.1:-73827421 MS.gene37702:CDS
TTTAGGTTACTTTGATGTGA+GGG 0.488786 1.1:-73828070 MS.gene37702:intron
TGCTCTCATCCAATGTAAAA+CGG 0.492747 1.1:+73827974 None:intergenic
GAGATCCGTTATTGTGTCGC+TGG 0.505951 1.1:-73828179 MS.gene37702:CDS
TGAGGGATCGCAATGAGGCT+TGG 0.507939 1.1:-73828053 MS.gene37702:CDS
CACTTCCAGCGACACAATAA+CGG 0.513919 1.1:+73828174 None:intergenic
CTTTAGGTTACTTTGATGTG+AGG 0.517016 1.1:-73828071 MS.gene37702:intron
CCGAAGCTTAAACATCATCA+TGG 0.520408 1.1:-73829558 MS.gene37702:CDS
AGAACGTGGTTACTCTTACA+TGG 0.526887 1.1:-73828541 MS.gene37702:intron
AAGCTTCGGTTTGAGACTTG+AGG 0.536201 1.1:+73829572 None:intergenic
CGTGTATGGGTGAAGAAAGG+AGG 0.536845 1.1:-73828027 MS.gene37702:CDS
TGAGGCTTGGATTCGTGTAT+GGG 0.561379 1.1:-73828040 MS.gene37702:CDS
TCCAATGAGACAAACTCCTT+AGG 0.562972 1.1:+73828749 None:intergenic
ATTCGTGTATGGGTGAAGAA+AGG 0.567203 1.1:-73828030 MS.gene37702:CDS
TCCCCATCACAAAGAACCTA+AGG 0.567435 1.1:-73828765 MS.gene37702:CDS
AAACGGTGATAAATTCCAGC+AGG 0.574056 1.1:+73827991 None:intergenic
CGGCATCTAACTTCCAGCTA+AGG 0.574902 1.1:+73828604 None:intergenic
ATGCTTGAAGAACTTCCTCT+CGG 0.577106 1.1:+73828822 None:intergenic
TCCTTAGGTTCTTTGTGATG+GGG 0.584649 1.1:+73828764 None:intergenic
GAGAGGAAGTTCTTCAAGCA+TGG 0.603425 1.1:-73828820 MS.gene37702:CDS
AGAGGAATAATACCTTGTTG+GGG 0.604563 1.1:+73829531 None:intergenic
ATGCGATTTCAATGCGCAGA+GGG 0.615982 1.1:-73827368 MS.gene37702:CDS
CACATGATCATCTTCCTGCA+AGG 0.620106 1.1:-73827461 MS.gene37702:CDS
GCTTGAAGAACTTCCTCTCG+GGG 0.627432 1.1:+73828824 None:intergenic
AGAGCATCTGCATACTGATG+AGG 0.635012 1.1:-73828201 MS.gene37702:CDS
AAGCAGTGGCGTCAACAGCA+TGG 0.641418 1.1:+73827307 None:intergenic
CTTGCAGGAAGATGATCATG+TGG 0.641989 1.1:+73827462 None:intergenic
TGATGTGAGGGATCGCAATG+AGG 0.643923 1.1:-73828058 MS.gene37702:CDS
GCAGAATCAATCTTAAGCAG+TGG 0.655901 1.1:+73827293 None:intergenic
GAGGAATAATACCTTGTTGG+GGG 0.678049 1.1:+73829532 None:intergenic
TTGCAGGAAGATGATCATGT+GGG 0.692332 1.1:+73827463 None:intergenic
AATGCGATTTCAATGCGCAG+AGG 0.758431 1.1:-73827369 MS.gene37702:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACATAATTATTTTTCA+GGG + chr1.1:73827465-73827484 None:intergenic 10.0%
!! CATTTAATAACAAATGTATT+TGG + chr1.1:73827640-73827659 None:intergenic 15.0%
!! GTTTAATAAAAAATACATGA+AGG + chr1.1:73829151-73829170 None:intergenic 15.0%
!! TAACATTCAAAACTATTTAT+GGG - chr1.1:73828498-73828517 MS.gene37702:intron 15.0%
!!! AAGTTTTAAATGTTTTAGAA+GGG - chr1.1:73827901-73827920 MS.gene37702:intron 15.0%
!!! CAAAAACATAATTATTTTTC+AGG + chr1.1:73827466-73827485 None:intergenic 15.0%
!!! TAAGTTTTAAATGTTTTAGA+AGG - chr1.1:73827900-73827919 MS.gene37702:intron 15.0%
!!! TGTATTTTTTATTAAACACA+AGG - chr1.1:73829154-73829173 MS.gene37702:intron 15.0%
!!! TTTTTTGTGATTAATTTGTT+AGG - chr1.1:73827757-73827776 MS.gene37702:intron 15.0%
!! AAAGAAAAACAGGAAATATT+TGG + chr1.1:73828805-73828824 None:intergenic 20.0%
!! ACAGAAAAATTATAAGCTAA+GGG + chr1.1:73829024-73829043 None:intergenic 20.0%
!! AGCTAAAAGATAACAAAAAT+AGG + chr1.1:73829263-73829282 None:intergenic 20.0%
!! AGTTAAATTGAAATAGCTTA+TGG + chr1.1:73827505-73827524 None:intergenic 20.0%
!! CATTGAATAACTAATGTATA+TGG - chr1.1:73827601-73827620 MS.gene37702:intron 20.0%
!! GAAACTTAAAATTATCAACA+TGG + chr1.1:73827540-73827559 None:intergenic 20.0%
!! GTAACATTCAAAACTATTTA+TGG - chr1.1:73828497-73828516 MS.gene37702:intron 20.0%
!! TTATTCATATGCTAATTGTA+GGG - chr1.1:73828206-73828225 MS.gene37702:CDS 20.0%
!! TTGAATATATGTTAAGATGA+AGG - chr1.1:73829210-73829229 MS.gene37702:intron 20.0%
!! TTTATTCATATGCTAATTGT+AGG - chr1.1:73828205-73828224 MS.gene37702:CDS 20.0%
!!! AAATATTTGGTAACTTAACA+GGG + chr1.1:73828792-73828811 None:intergenic 20.0%
!!! AATATTTCCTGTTTTTCTTT+AGG - chr1.1:73828805-73828824 MS.gene37702:CDS 20.0%
!!! TAAGCAATATTTTACTTGTT+AGG + chr1.1:73827665-73827684 None:intergenic 20.0%
!!! TACATAATAGGGTTTTATAT+AGG - chr1.1:73827730-73827749 MS.gene37702:intron 20.0%
! AAAGTAACCTAAAGAAAAAC+AGG + chr1.1:73828815-73828834 None:intergenic 25.0%
! AAGCTAAAGTTATCAGAAAT+TGG + chr1.1:73829056-73829075 None:intergenic 25.0%
! AGCTAAAGTTATCAGAAATT+GGG + chr1.1:73829055-73829074 None:intergenic 25.0%
! AGCTAAGAAAATGGTATAAT+CGG + chr1.1:73827411-73827430 None:intergenic 25.0%
! AGGAATCTACATACATAATA+GGG - chr1.1:73827719-73827738 MS.gene37702:intron 25.0%
! GACAGAAAAATTATAAGCTA+AGG + chr1.1:73829025-73829044 None:intergenic 25.0%
! GTGAATTAAAGCTAAGAAAA+TGG + chr1.1:73827420-73827439 None:intergenic 25.0%
! TAGGAATCTACATACATAAT+AGG - chr1.1:73827718-73827737 MS.gene37702:intron 25.0%
! TTGATCTTCTCTTCATAATT+TGG + chr1.1:73828659-73828678 None:intergenic 25.0%
!! AATTTATCACCGTTTTACAT+TGG - chr1.1:73828909-73828928 MS.gene37702:intron 25.0%
!! GAAATATTTGGTAACTTAAC+AGG + chr1.1:73828793-73828812 None:intergenic 25.0%
!!! CATAATTTGGTAACTTTTCT+GGG + chr1.1:73828646-73828665 None:intergenic 25.0%
!!! TAACTTTAGCTTTTGAACTT+TGG - chr1.1:73829064-73829083 MS.gene37702:intron 25.0%
!!! TCATAATTTGGTAACTTTTC+TGG + chr1.1:73828647-73828666 None:intergenic 25.0%
!!! TGATTAATTTGTTAGGAGTA+GGG - chr1.1:73827764-73827783 MS.gene37702:intron 25.0%
AAAGAGGAATAATACCTTGT+TGG + chr1.1:73827366-73827385 None:intergenic 30.0%
AAGAGGAATAATACCTTGTT+GGG + chr1.1:73827365-73827384 None:intergenic 30.0%
AGTAATTAGCAGTAGCATAT+GGG - chr1.1:73829471-73829490 MS.gene37702:intron 30.0%
GCACATGATATAAACAAGAT+TGG + chr1.1:73827933-73827952 None:intergenic 30.0%
GGAAAAAAAAAATGAACGAG+AGG + chr1.1:73827390-73827409 None:intergenic 30.0%
GGATGAGAGCAATTATATTA+AGG - chr1.1:73828930-73828949 MS.gene37702:intron 30.0%
TAGTAATTAGCAGTAGCATA+TGG - chr1.1:73829470-73829489 MS.gene37702:intron 30.0%
TTCGCATATGCATGTTTATT+TGG + chr1.1:73828434-73828453 None:intergenic 30.0%
TTGCATGATTCTAATTATGC+AGG - chr1.1:73829360-73829379 MS.gene37702:intron 30.0%
! GCAATATATCAAGACTTTTG+TGG - chr1.1:73829546-73829565 MS.gene37702:CDS 30.0%
! TGATTTTCTATTAGCAACAG+AGG + chr1.1:73828995-73829014 None:intergenic 30.0%
! TTTAGGTTACTTTGATGTGA+GGG - chr1.1:73828822-73828841 MS.gene37702:CDS 30.0%
!! ATGTCTGCATTTTAACATTC+CGG - chr1.1:73828556-73828575 MS.gene37702:CDS 30.0%
!! ATTAATTTGTTAGGAGTAGG+GGG - chr1.1:73827766-73827785 MS.gene37702:intron 30.0%
!! CTTCCTATCATTTTTATCTG+AGG - chr1.1:73828589-73828608 MS.gene37702:CDS 30.0%
!! GATTAATTTGTTAGGAGTAG+GGG - chr1.1:73827765-73827784 MS.gene37702:intron 30.0%
!! GTGATTAATTTGTTAGGAGT+AGG - chr1.1:73827763-73827782 MS.gene37702:intron 30.0%
!! TTACATTTTGTGTTGTTGAG+AGG - chr1.1:73827996-73828015 MS.gene37702:CDS 30.0%
!!! ATTTTTCAGGGAAAAGAAGA+AGG + chr1.1:73827453-73827472 None:intergenic 30.0%
!!! TTTCATACGTCGTTTTTCAT+AGG - chr1.1:73828043-73828062 MS.gene37702:CDS 30.0%
!!! TTTTTCAGGGAAAAGAAGAA+GGG + chr1.1:73827452-73827471 None:intergenic 30.0%
AAAAAGATTCGTGAAGAACG+TGG - chr1.1:73828337-73828356 MS.gene37702:intron 35.0%
AAAATGAACGAGAGGTAAAG+AGG + chr1.1:73827382-73827401 None:intergenic 35.0%
ACGCCAAAGTAATATTGCAT+AGG + chr1.1:73827825-73827844 None:intergenic 35.0%
AGAGGAATAATACCTTGTTG+GGG + chr1.1:73827364-73827383 None:intergenic 35.0%
AGTTCTTCAAGCATGGTATA+TGG - chr1.1:73828079-73828098 MS.gene37702:intron 35.0%
CATTTGACGTCAAAACGAAA+AGG + chr1.1:73828539-73828558 None:intergenic 35.0%
CCAAAGTAATATTGCATAGG+AGG + chr1.1:73827822-73827841 None:intergenic 35.0%
CCTCCTATGCAATATTACTT+TGG - chr1.1:73827819-73827838 MS.gene37702:intron 35.0%
CGTGTTAATATTGCAGAACT+TGG - chr1.1:73828262-73828281 MS.gene37702:CDS 35.0%
CTAGTTAAATCATACCTTGC+AGG + chr1.1:73829448-73829467 None:intergenic 35.0%
GAGACTGTAATTAGTGAGTT+GGG - chr1.1:73827690-73827709 MS.gene37702:intron 35.0%
GAGGTTCGACATAAATTATC+TGG + chr1.1:73829501-73829520 None:intergenic 35.0%
GTAATATTGCATAGGAGGTT+CGG + chr1.1:73827817-73827836 None:intergenic 35.0%
GTGCCTCAGATAAAAATGAT+AGG + chr1.1:73828595-73828614 None:intergenic 35.0%
TAATATTGCATAGGAGGTTC+GGG + chr1.1:73827816-73827835 None:intergenic 35.0%
TGAGACTGTAATTAGTGAGT+TGG - chr1.1:73827689-73827708 MS.gene37702:intron 35.0%
TGAGAGGTTGTAGAAATAAG+AGG - chr1.1:73828012-73828031 MS.gene37702:CDS 35.0%
TGCTCTCATCCAATGTAAAA+CGG + chr1.1:73828921-73828940 None:intergenic 35.0%
! ATTAGTGAGTTGGGTTTGAT+AGG - chr1.1:73827699-73827718 MS.gene37702:intron 35.0%
! ATTTGGTAACTTAACAGGGT+AGG + chr1.1:73828788-73828807 None:intergenic 35.0%
! CCATGATGATGTTTAAGCTT+CGG + chr1.1:73827337-73827356 None:intergenic 35.0%
! CTTTAGGTTACTTTGATGTG+AGG - chr1.1:73828821-73828840 MS.gene37702:CDS 35.0%
! GCATGTTTATTTGGAGTAGT+GGG + chr1.1:73828425-73828444 None:intergenic 35.0%
! GGATGTGATTGCAAAGATTT+TGG - chr1.1:73829175-73829194 MS.gene37702:intron 35.0%
! TATCAAGACTTTTGTGGAGA+AGG - chr1.1:73829552-73829571 MS.gene37702:CDS 35.0%
! TGCATGTTTATTTGGAGTAG+TGG + chr1.1:73828426-73828445 None:intergenic 35.0%
! TTCGATAAAGCACTTGTACA+TGG + chr1.1:73827869-73827888 None:intergenic 35.0%
! TTTATTTGGAGTAGTGGGAA+AGG + chr1.1:73828420-73828439 None:intergenic 35.0%
!! AGGGGGATTGATTTGTATTA+GGG - chr1.1:73827783-73827802 MS.gene37702:intron 35.0%
!! TAGGGGGATTGATTTGTATT+AGG - chr1.1:73827782-73827801 MS.gene37702:intron 35.0%
!! TTTTTGTTGGTGAGCCAATT+TGG - chr1.1:73829392-73829411 MS.gene37702:intron 35.0%
AAACGGTGATAAATTCCAGC+AGG + chr1.1:73828904-73828923 None:intergenic 40.0%
AATATTGCATAGGAGGTTCG+GGG + chr1.1:73827815-73827834 None:intergenic 40.0%
ACCTAAGGAGTTTGTCTCAT+TGG - chr1.1:73828142-73828161 MS.gene37702:intron 40.0%
ACTCCTTAGGTTCTTTGTGA+TGG + chr1.1:73828133-73828152 None:intergenic 40.0%
AGAACGTGGTTACTCTTACA+TGG - chr1.1:73828351-73828370 MS.gene37702:intron 40.0%
AGTAGCAGTAGGCATCTTAT+TGG + chr1.1:73827969-73827988 None:intergenic 40.0%
ATGCTTGAAGAACTTCCTCT+CGG + chr1.1:73828073-73828092 None:intergenic 40.0%
ATTCGTGTATGGGTGAAGAA+AGG - chr1.1:73828862-73828881 MS.gene37702:intron 40.0%
CACAACAGGACTTCCAAAAA+GGG + chr1.1:73829121-73829140 None:intergenic 40.0%
CCGAAGCTTAAACATCATCA+TGG - chr1.1:73827334-73827353 MS.gene37702:CDS 40.0%
CGATTGTATGGAGTCCAAAT+TGG + chr1.1:73829409-73829428 None:intergenic 40.0%
CGCATTGAAATCGCATTATG+AGG + chr1.1:73829520-73829539 None:intergenic 40.0%
CTCCTTAGGTTCTTTGTGAT+GGG + chr1.1:73828132-73828151 None:intergenic 40.0%
GAGGAATAATACCTTGTTGG+GGG + chr1.1:73827363-73827382 None:intergenic 40.0%
GTAGCAGTAGGCATCTTATT+GGG + chr1.1:73827968-73827987 None:intergenic 40.0%
TCCAATGAGACAAACTCCTT+AGG + chr1.1:73828146-73828165 None:intergenic 40.0%
TCCTTAGGTTCTTTGTGATG+GGG + chr1.1:73828131-73828150 None:intergenic 40.0%
TGGATAACAGACTACGAAGT+TGG + chr1.1:73827849-73827868 None:intergenic 40.0%
TGGATCTGTTTCAGGGTTAT+CGG + chr1.1:73828311-73828330 None:intergenic 40.0%
TTGCAGGAAGATGATCATGT+GGG + chr1.1:73829432-73829451 None:intergenic 40.0%
! GGAATGATCATTTTACCTGC+TGG - chr1.1:73828886-73828905 MS.gene37702:intron 40.0%
! TTTTCTGCAGGATGTTTGTG+AGG - chr1.1:73828616-73828635 MS.gene37702:CDS 40.0%
!! TTTTTGGAAGTCCTGTTGTG+CGG - chr1.1:73829121-73829140 MS.gene37702:intron 40.0%
!!! CAGGCATTGCGATTTTTTGT+TGG - chr1.1:73829379-73829398 MS.gene37702:intron 40.0%
!!! TCACGAATCTTTTTCAGCTC+TGG + chr1.1:73828331-73828350 None:intergenic 40.0%
AATGCGATTTCAATGCGCAG+AGG - chr1.1:73829523-73829542 MS.gene37702:intron 45.0%
ATGAGGCTTGGATTCGTGTA+TGG - chr1.1:73828851-73828870 MS.gene37702:intron 45.0%
ATGCGATTTCAATGCGCAGA+GGG - chr1.1:73829524-73829543 MS.gene37702:intron 45.0%
CACATGATCATCTTCCTGCA+AGG - chr1.1:73829431-73829450 MS.gene37702:intron 45.0%
CACTTCCAGCGACACAATAA+CGG + chr1.1:73828721-73828740 None:intergenic 45.0%
CTTGCAGGAAGATGATCATG+TGG + chr1.1:73829433-73829452 None:intergenic 45.0%
GAGAGGAAGTTCTTCAAGCA+TGG - chr1.1:73828072-73828091 MS.gene37702:intron 45.0%
GCACAACAGGACTTCCAAAA+AGG + chr1.1:73829122-73829141 None:intergenic 45.0%
GTAACAGCAACAGTAGCAGT+AGG + chr1.1:73827980-73827999 None:intergenic 45.0%
GTAACTTAACAGGGTAGGCA+TGG + chr1.1:73828783-73828802 None:intergenic 45.0%
GTCTCATTGGATCAACTTGC+TGG - chr1.1:73828155-73828174 MS.gene37702:intron 45.0%
TCCCCATCACAAAGAACCTA+AGG - chr1.1:73828127-73828146 MS.gene37702:intron 45.0%
TGAGGCTTGGATTCGTGTAT+GGG - chr1.1:73828852-73828871 MS.gene37702:intron 45.0%
TGATCATGTGGGCGATTGTA+TGG + chr1.1:73829421-73829440 None:intergenic 45.0%
TGCTTGAAGAACTTCCTCTC+GGG + chr1.1:73828072-73828091 None:intergenic 45.0%
! AAGCTTCGGTTTGAGACTTG+AGG + chr1.1:73827323-73827342 None:intergenic 45.0%
! AGAGCATCTGCATACTGATG+AGG - chr1.1:73828691-73828710 MS.gene37702:intron 45.0%
! GATAGGAAGCATGACATAGC+CGG + chr1.1:73828578-73828597 None:intergenic 45.0%
! TTTTTCATAGGATCCCCGAG+AGG - chr1.1:73828055-73828074 MS.gene37702:CDS 45.0%
!! ATCTGAGGCACATTTTCTGC+AGG - chr1.1:73828604-73828623 MS.gene37702:CDS 45.0%
!! TCAGCTCTGGATCTGTTTCA+GGG + chr1.1:73828318-73828337 None:intergenic 45.0%
!! TTCAGCTCTGGATCTGTTTC+AGG + chr1.1:73828319-73828338 None:intergenic 45.0%
CAGAACTTGGAGTCCTTAGC+TGG - chr1.1:73828275-73828294 MS.gene37702:intron 50.0%
CAGGACTTCCAAAAAGGGCA+CGG + chr1.1:73829116-73829135 None:intergenic 50.0%
CATCATGGTTTCCCCCAACA+AGG - chr1.1:73827349-73827368 MS.gene37702:CDS 50.0%
CGGCATCTAACTTCCAGCTA+AGG + chr1.1:73828291-73828310 None:intergenic 50.0%
CGTGTATGGGTGAAGAAAGG+AGG - chr1.1:73828865-73828884 MS.gene37702:intron 50.0%
GAGATCCGTTATTGTGTCGC+TGG - chr1.1:73828713-73828732 MS.gene37702:intron 50.0%
GCTTGAAGAACTTCCTCTCG+GGG + chr1.1:73828071-73828090 None:intergenic 50.0%
TGATGTGAGGGATCGCAATG+AGG - chr1.1:73828834-73828853 MS.gene37702:intron 50.0%
! ACATTGTCCCGTGCCCTTTT+TGG - chr1.1:73829105-73829124 MS.gene37702:intron 50.0%
! AGGACTTCCAAAAAGGGCAC+GGG + chr1.1:73829115-73829134 None:intergenic 50.0%
! CGTTATTGTGTCGCTGGAAG+TGG - chr1.1:73828719-73828738 MS.gene37702:intron 50.0%
AAGCAGTGGCGTCAACAGCA+TGG + chr1.1:73829588-73829607 None:intergenic 55.0%
ATGAAGGTCAGCCGCACAAC+AGG + chr1.1:73829135-73829154 None:intergenic 55.0%
TGAGGGATCGCAATGAGGCT+TGG - chr1.1:73828839-73828858 MS.gene37702:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 73827305 73829609 73827305 ID=MS.gene37702
chr1.1 mRNA 73827305 73829609 73827305 ID=MS.gene37702.t1;Parent=MS.gene37702
chr1.1 exon 73829544 73829609 73829544 ID=MS.gene37702.t1.exon1;Parent=MS.gene37702.t1
chr1.1 CDS 73829544 73829609 73829544 ID=cds.MS.gene37702.t1;Parent=MS.gene37702.t1
chr1.1 exon 73828738 73828849 73828738 ID=MS.gene37702.t1.exon2;Parent=MS.gene37702.t1
chr1.1 CDS 73828738 73828849 73828738 ID=cds.MS.gene37702.t1;Parent=MS.gene37702.t1
chr1.1 exon 73828542 73828636 73828542 ID=MS.gene37702.t1.exon3;Parent=MS.gene37702.t1
chr1.1 CDS 73828542 73828636 73828542 ID=cds.MS.gene37702.t1;Parent=MS.gene37702.t1
chr1.1 exon 73828174 73828288 73828174 ID=MS.gene37702.t1.exon4;Parent=MS.gene37702.t1
chr1.1 CDS 73828174 73828288 73828174 ID=cds.MS.gene37702.t1;Parent=MS.gene37702.t1
chr1.1 exon 73827963 73828087 73827963 ID=MS.gene37702.t1.exon5;Parent=MS.gene37702.t1
chr1.1 CDS 73827963 73828087 73827963 ID=cds.MS.gene37702.t1;Parent=MS.gene37702.t1
chr1.1 exon 73827305 73827532 73827305 ID=MS.gene37702.t1.exon6;Parent=MS.gene37702.t1
chr1.1 CDS 73827305 73827532 73827305 ID=cds.MS.gene37702.t1;Parent=MS.gene37702.t1
Gene Sequence

>MS.gene37702

TTCGATCGAGATAAACCTCAAGTCTCAAACCGAAGCTTAAACATCATCATGGTTTCCCCCAACAAGGTATTATTCCTCTTTACCTCTCGTTCATTTTTTTTTTCCGATTATACCATTTTCTTAGCTTTAATTCACAAAATTATACCCTTCTTCTTTTCCCTGAAAAATAATTATGTTTTTGTTAATGAATGTTTGTACCATAAGCTATTTCAATTTAACTGCTATCGTTTCTCCATGTTGATAATTTTAAGTTTCTCAAAGAAAGAAAATCATAAGCAAAAAATTACTTTTTAATTCATTGAATAACTAATGTATATGGTCTGAAATATAGACCAAATACATTTGTTATTAAATGAACCTAACAAGTAAAATATTGCTTATAATTGAGACTGTAATTAGTGAGTTGGGTTTGATAGGAATCTACATACATAATAGGGTTTTATATAGGCAAATTTTTTGTGATTAATTTGTTAGGAGTAGGGGGATTGATTTGTATTAGGGTTCGATCCCCGAACCTCCTATGCAATATTACTTTGGCGTTCCAACTTCGTAGTCTGTTATCCATGTACAAGTGCTTTATCGAAATCTTAATCGTTAAGTTTTAAATGTTTTAGAAGGGTTATGTCCAATCTTGTTTATATCATGTGCTCAAATTGCTTGCCCAATAAGATGCCTACTGCTACTGTTGCTGTTACATTTTGTGTTGTTGAGAGGTTGTAGAAATAAGAGGAATCATATTTTCATACGTCGTTTTTCATAGGATCCCCGAGAGGAAGTTCTTCAAGCATGGTATATGGATGATAGCAATGAAGATCAAAGACTTCCCCATCACAAAGAACCTAAGGAGTTTGTCTCATTGGATCAACTTGCTGGTAAAAGCTTATTGTTGCATGTGTTAGTTTTATTCATATGCTAATTGTAGGGTTTGTGCTCACGAGTCACGTCTGAACTTTAACTCGTGTTAATATTGCAGAACTTGGAGTCCTTAGCTGGAAGTTAGATGCCGATAACCCTGAAACAGATCCAGAGCTGAAAAAGATTCGTGAAGAACGTGGTTACTCTTACATGGTTAGTGATGCTAATGTTTTATTGTCATTGTTTAGATAGAACTACCTTTCCCACTACTCCAAATAAACATGCATATGCGAAGAAATATAAAAATATATGTAAAATCACTGCTGCTTAATTATATGTAACATTCAAAACTATTTATGGGAAGTCTAACTTTTATCCTTTTCGTTTTGACGTCAAATGTCTGCATTTTAACATTCCGGCTATGTCATGCTTCCTATCATTTTTATCTGAGGCACATTTTCTGCAGGATGTTTGTGAGGTCTGCCCAGAAAAGTTACCAAATTATGAAGAGAAGATCAAGAACTTCTTTGAAGAGCATCTGCATACTGATGAGGAGATCCGTTATTGTGTCGCTGGAAGTGGTATGAACAGATTTCTCATTTGATCTGATTTTCTCGTTACCATGCCTACCCTGTTAAGTTACCAAATATTTCCTGTTTTTCTTTAGGTTACTTTGATGTGAGGGATCGCAATGAGGCTTGGATTCGTGTATGGGTGAAGAAAGGAGGAATGATCATTTTACCTGCTGGAATTTATCACCGTTTTACATTGGATGAGAGCAATTATATTAAGGTATTGATTGCATATTTGCAAATTGTAGCTATACAACTTTCCTCTGTTGCTAATAGAAAATCACTATGTCCCTTAGCTTATAATTTTTCTGTCAATCTGTCCCAATTTCTGATAACTTTAGCTTTTGAACTTTGGTTCTTTGAATACTTTAAAACATTGTCCCGTGCCCTTTTTGGAAGTCCTGTTGTGCGGCTGACCTTCATGTATTTTTTATTAAACACAAGGATGTGATTGCAAAGATTTTGGTTAGTTGCATTCTTGAATATATGTTAAGATGAAGGTTAAACTTTGACGTGACATACTGCAAGCCTATTTTTGTTATCTTTTAGCTGTTGATATCTATCTTCAACTTTTTTTTTTTTTTTAATCTTAACATTTGCTGAGATTAGTTTACTTCATACGTGTTTCTTGCATGATTCTAATTATGCAGGCATTGCGATTTTTTGTTGGTGAGCCAATTTGGACTCCATACAATCGCCCACATGATCATCTTCCTGCAAGGTATGATTTAACTAGTTTAGTAATTAGCAGTAGCATATGGGACAACCAGATAATTTATGTCGAACCTCATAATGCGATTTCAATGCGCAGAGGGCAATATATCAAGACTTTTGTGGAGAAGGATGTTGCTAACCATGCTGTTGACGCCACTGCTTAA
Protein sequence

>MS.gene37702.t1

FDRDKPQVSNRSLNIIMVSPNKDPREEVLQAWYMDDSNEDQRLPHHKEPKEFVSLDQLAELGVLSWKLDADNPETDPELKKIREERGYSYMDVCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEAWIRVWVKKGGMIILPAGIYHRFTLDESNYIKALRFFVGEPIWTPYNRPHDHLPARYDLTSLVISSSIWDNQIIYVEPHNAISMRRGQYIKTFVEKDVANHAVDATA