Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070957.t1 | XP_013469755.1 | 98 | 200 | 4 | 0 | 1 | 200 | 1 | 200 | 3.10E-114 | 421 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070957.t1 | F6HDT7 | 82.6 | 195 | 34 | 0 | 6 | 200 | 5 | 199 | 1.4e-99 | 363.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070957.t1 | A0A072VQU1 | 98.0 | 200 | 4 | 0 | 1 | 200 | 1 | 200 | 2.2e-114 | 421.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene34385 | MS.gene070957 | PPI |
| MS.gene006404 | MS.gene070957 | PPI |
| MS.gene006406 | MS.gene070957 | PPI |
| MS.gene070957 | MS.gene34385 | PPI |
| MS.gene34383 | MS.gene070957 | PPI |
| MS.gene37702 | MS.gene070957 | PPI |
| MS.gene070955 | MS.gene070957 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070957.t1 | MTR_1g102870 | 98.000 | 200 | 4 | 0 | 1 | 200 | 1 | 200 | 1.96e-148 | 410 |
| MS.gene070957.t1 | MTR_1g102870 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 1.27e-112 | 318 |
| MS.gene070957.t1 | MTR_1g102890 | 65.730 | 178 | 61 | 0 | 12 | 189 | 2 | 179 | 1.46e-90 | 263 |
| MS.gene070957.t1 | MTR_1g102890 | 65.333 | 150 | 52 | 0 | 12 | 161 | 2 | 151 | 1.16e-74 | 222 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070957.t1 | AT4G14710 | 81.538 | 195 | 35 | 1 | 6 | 200 | 6 | 199 | 6.74e-121 | 340 |
| MS.gene070957.t1 | AT4G14710 | 81.538 | 195 | 35 | 1 | 6 | 200 | 6 | 199 | 6.74e-121 | 340 |
| MS.gene070957.t1 | AT4G14710 | 81.443 | 194 | 35 | 1 | 7 | 200 | 9 | 201 | 4.36e-120 | 338 |
| MS.gene070957.t1 | AT4G14710 | 81.122 | 196 | 35 | 2 | 6 | 200 | 6 | 200 | 4.81e-119 | 336 |
| MS.gene070957.t1 | AT4G14716 | 84.066 | 182 | 29 | 0 | 6 | 187 | 6 | 187 | 2.42e-118 | 334 |
| MS.gene070957.t1 | AT4G14710 | 87.356 | 174 | 22 | 0 | 6 | 179 | 6 | 179 | 1.02e-116 | 329 |
| MS.gene070957.t1 | AT4G14710 | 81.421 | 183 | 33 | 1 | 18 | 200 | 1 | 182 | 8.94e-113 | 319 |
| MS.gene070957.t1 | AT2G26400 | 73.000 | 200 | 53 | 1 | 1 | 200 | 1 | 199 | 2.80e-112 | 319 |
| MS.gene070957.t1 | AT2G26400 | 73.000 | 200 | 53 | 1 | 1 | 200 | 16 | 214 | 3.21e-112 | 319 |
| MS.gene070957.t1 | AT4G14716 | 84.118 | 170 | 27 | 0 | 18 | 187 | 1 | 170 | 3.29e-110 | 313 |
| MS.gene070957.t1 | AT2G26400 | 77.654 | 179 | 40 | 0 | 1 | 179 | 1 | 179 | 1.92e-108 | 310 |
| MS.gene070957.t1 | AT2G26400 | 77.654 | 179 | 40 | 0 | 1 | 179 | 16 | 194 | 2.10e-108 | 310 |
| MS.gene070957.t1 | AT5G43850 | 68.539 | 178 | 56 | 0 | 12 | 189 | 2 | 179 | 2.86e-94 | 273 |
Find 46 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCTCTGGATCTGTTTC+AGG | 0.073924 | 1.4:+79558833 | None:intergenic |
| TTGATCTTCTCTTCATAATT+TGG | 0.180796 | 1.4:+79558493 | None:intergenic |
| GGATGAGAGCAATTATATTA+AGG | 0.311003 | 1.4:-79558219 | MS.gene070957:intron |
| GTCTCATTGGATCAACTTGC+TGG | 0.324867 | 1.4:-79558994 | MS.gene070957:intron |
| TGGATCTGTTTCAGGGTTAT+CGG | 0.326072 | 1.4:+79558841 | None:intergenic |
| ACCTAAGGAGTTTGTCTCAT+TGG | 0.331615 | 1.4:-79559007 | MS.gene070957:CDS |
| CGATTGTATGGAGTCCAAAT+TGG | 0.341557 | 1.4:+79557746 | None:intergenic |
| AAGAGGAATAATACCTTGTT+GGG | 0.350367 | 1.4:+79559783 | None:intergenic |
| CTAGTTAAATCATACCTTGC+AGG | 0.361998 | 1.4:+79557707 | None:intergenic |
| AGTTCTTCAAGCATGGTATA+TGG | 0.375494 | 1.4:-79559070 | MS.gene070957:CDS |
| CAGAACTTGGAGTCCTTAGC+TGG | 0.402181 | 1.4:-79558874 | MS.gene070957:CDS |
| TCAGCTCTGGATCTGTTTCA+GGG | 0.414532 | 1.4:+79558834 | None:intergenic |
| CTCCTTAGGTTCTTTGTGAT+GGG | 0.423729 | 1.4:+79559020 | None:intergenic |
| AAAGAGGAATAATACCTTGT+TGG | 0.425539 | 1.4:+79559782 | None:intergenic |
| CGTTATTGTGTCGCTGGAAG+TGG | 0.433261 | 1.4:-79558430 | MS.gene070957:intron |
| ATGAGGCTTGGATTCGTGTA+TGG | 0.439403 | 1.4:-79558298 | MS.gene070957:CDS |
| TGATCATGTGGGCGATTGTA+TGG | 0.456398 | 1.4:+79557734 | None:intergenic |
| ACTCCTTAGGTTCTTTGTGA+TGG | 0.457485 | 1.4:+79559019 | None:intergenic |
| TGCTTGAAGAACTTCCTCTC+GGG | 0.472007 | 1.4:+79559080 | None:intergenic |
| TTTAGGTTACTTTGATGTGA+GGG | 0.488786 | 1.4:-79558327 | MS.gene070957:intron |
| TGCTCTCATCCAATGTAAAA+CGG | 0.492747 | 1.4:+79558231 | None:intergenic |
| GAGATCCGTTATTGTGTCGC+TGG | 0.505951 | 1.4:-79558436 | MS.gene070957:CDS |
| TGAGGGATCGCAATGAGGCT+TGG | 0.507939 | 1.4:-79558310 | MS.gene070957:CDS |
| CACTTCCAGCGACACAATAA+CGG | 0.513919 | 1.4:+79558431 | None:intergenic |
| CTTTAGGTTACTTTGATGTG+AGG | 0.517016 | 1.4:-79558328 | MS.gene070957:intron |
| AGAACGTGGTTACTCTTACA+TGG | 0.526887 | 1.4:-79558798 | MS.gene070957:intron |
| CGTGTATGGGTGAAGAAAGG+AGG | 0.536845 | 1.4:-79558284 | MS.gene070957:CDS |
| TGAGGCTTGGATTCGTGTAT+GGG | 0.561379 | 1.4:-79558297 | MS.gene070957:CDS |
| TCCAATGAGACAAACTCCTT+AGG | 0.562972 | 1.4:+79559006 | None:intergenic |
| ATTCGTGTATGGGTGAAGAA+AGG | 0.567203 | 1.4:-79558287 | MS.gene070957:CDS |
| TCCCCATCACAAAGAACCTA+AGG | 0.567435 | 1.4:-79559022 | MS.gene070957:CDS |
| AAACGGTGATAAATTCCAGC+AGG | 0.574056 | 1.4:+79558248 | None:intergenic |
| CGGCATCTAACTTCCAGCTA+AGG | 0.574902 | 1.4:+79558861 | None:intergenic |
| ATGCTTGAAGAACTTCCTCT+CGG | 0.577106 | 1.4:+79559079 | None:intergenic |
| TCCTTAGGTTCTTTGTGATG+GGG | 0.584649 | 1.4:+79559021 | None:intergenic |
| GAGAGGAAGTTCTTCAAGCA+TGG | 0.603425 | 1.4:-79559077 | MS.gene070957:CDS |
| AGAGGAATAATACCTTGTTG+GGG | 0.604563 | 1.4:+79559784 | None:intergenic |
| CACATGATCATCTTCCTGCA+AGG | 0.620106 | 1.4:-79557721 | MS.gene070957:intron |
| GCTTGAAGAACTTCCTCTCG+GGG | 0.627432 | 1.4:+79559081 | None:intergenic |
| AGAGCATCTGCATACTGATG+AGG | 0.635012 | 1.4:-79558458 | MS.gene070957:CDS |
| AAGCAGTGGCGTCAACAGCA+TGG | 0.641418 | 1.4:+79557567 | None:intergenic |
| CTTGCAGGAAGATGATCATG+TGG | 0.641989 | 1.4:+79557722 | None:intergenic |
| TGATGTGAGGGATCGCAATG+AGG | 0.643923 | 1.4:-79558315 | MS.gene070957:CDS |
| GCAGAATCAATCTTAAGCAG+TGG | 0.655901 | 1.4:+79557553 | None:intergenic |
| GAGGAATAATACCTTGTTGG+GGG | 0.678049 | 1.4:+79559785 | None:intergenic |
| TTGCAGGAAGATGATCATGT+GGG | 0.692332 | 1.4:+79557723 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACATAATTATTTTTCA+GGG | + | chr1.4:79557677-79557696 | None:intergenic | 10.0% |
| !! | CATTTAATAACAAATGTATT+TGG | + | chr1.4:79557848-79557867 | None:intergenic | 15.0% |
| !! | TAACATTCAAAACTATTTAT+GGG | - | chr1.4:79558706-79558725 | MS.gene070957:intron | 15.0% |
| !!! | AAGTTTTAAATGTTTTAGAA+GGG | - | chr1.4:79558109-79558128 | MS.gene070957:intron | 15.0% |
| !!! | CAAAAACATAATTATTTTTC+AGG | + | chr1.4:79557678-79557697 | None:intergenic | 15.0% |
| !!! | TAAGTTTTAAATGTTTTAGA+AGG | - | chr1.4:79558108-79558127 | MS.gene070957:intron | 15.0% |
| !!! | TTTTTTGTGATTAATTTGTT+AGG | - | chr1.4:79557965-79557984 | MS.gene070957:intron | 15.0% |
| !! | AAAGAAAAACAGGAAATATT+TGG | + | chr1.4:79559013-79559032 | None:intergenic | 20.0% |
| !! | ACAGAAAAATTATAAGCTAA+GGG | + | chr1.4:79559232-79559251 | None:intergenic | 20.0% |
| !! | AGCTAAAAGATAACAAAAAT+AGG | + | chr1.4:79559471-79559490 | None:intergenic | 20.0% |
| !! | AGTTAAATTGAAATAGCTTA+TGG | + | chr1.4:79557717-79557736 | None:intergenic | 20.0% |
| !! | CATTGAATAACTAATGTATA+TGG | - | chr1.4:79557809-79557828 | MS.gene070957:intron | 20.0% |
| !! | GAAACTTAAAATTATCAACA+TGG | + | chr1.4:79557752-79557771 | None:intergenic | 20.0% |
| !! | GTAACATTCAAAACTATTTA+TGG | - | chr1.4:79558705-79558724 | MS.gene070957:intron | 20.0% |
| !! | GTTTAATAAAAAATACGTGA+AGG | + | chr1.4:79559359-79559378 | None:intergenic | 20.0% |
| !! | TTATTCATATGCTAATTGTA+GGG | - | chr1.4:79558414-79558433 | MS.gene070957:intron | 20.0% |
| !! | TTGAATATATGTTAAGATGA+AGG | - | chr1.4:79559418-79559437 | MS.gene070957:intron | 20.0% |
| !! | TTTATTCATATGCTAATTGT+AGG | - | chr1.4:79558413-79558432 | MS.gene070957:intron | 20.0% |
| !!! | AAATATTTGGTAACTTAACA+GGG | + | chr1.4:79559000-79559019 | None:intergenic | 20.0% |
| !!! | AATATTTCCTGTTTTTCTTT+AGG | - | chr1.4:79559013-79559032 | MS.gene070957:CDS | 20.0% |
| !!! | CGTATTTTTTATTAAACACA+AGG | - | chr1.4:79559362-79559381 | MS.gene070957:intron | 20.0% |
| !!! | TAAGCAATATTTTACTTGTT+AGG | + | chr1.4:79557873-79557892 | None:intergenic | 20.0% |
| !!! | TACATAATAGGGTTTTATAT+AGG | - | chr1.4:79557938-79557957 | MS.gene070957:intron | 20.0% |
| ! | AAAGTAACCTAAAGAAAAAC+AGG | + | chr1.4:79559023-79559042 | None:intergenic | 25.0% |
| ! | AAGCTAAAGTTATCAGAAAT+TGG | + | chr1.4:79559264-79559283 | None:intergenic | 25.0% |
| ! | AGCTAAAGTTATCAGAAATT+GGG | + | chr1.4:79559263-79559282 | None:intergenic | 25.0% |
| ! | AGCTAAGAAAATGGTATAAT+CGG | + | chr1.4:79557623-79557642 | None:intergenic | 25.0% |
| ! | AGGAATCTACATACATAATA+GGG | - | chr1.4:79557927-79557946 | MS.gene070957:intron | 25.0% |
| ! | CACATGATATAAACAAGATT+GGG | + | chr1.4:79558140-79558159 | None:intergenic | 25.0% |
| ! | GACAGAAAAATTATAAGCTA+AGG | + | chr1.4:79559233-79559252 | None:intergenic | 25.0% |
| ! | GTGAATTAAAGCTAAGAAAA+TGG | + | chr1.4:79557632-79557651 | None:intergenic | 25.0% |
| ! | TAGGAATCTACATACATAAT+AGG | - | chr1.4:79557926-79557945 | MS.gene070957:intron | 25.0% |
| ! | TTGATCTTCTCTTCATAATT+TGG | + | chr1.4:79558867-79558886 | None:intergenic | 25.0% |
| !! | AATTTATCACCGTTTTACAT+TGG | - | chr1.4:79559117-79559136 | MS.gene070957:intron | 25.0% |
| !! | GAAATATTTGGTAACTTAAC+AGG | + | chr1.4:79559001-79559020 | None:intergenic | 25.0% |
| !!! | ATTTTTCAGGGAAAAGAAAA+AGG | + | chr1.4:79557665-79557684 | None:intergenic | 25.0% |
| !!! | CATAATTTGGTAACTTTTCT+GGG | + | chr1.4:79558854-79558873 | None:intergenic | 25.0% |
| !!! | TAACTTTAGCTTTTGAACTT+TGG | - | chr1.4:79559272-79559291 | MS.gene070957:intron | 25.0% |
| !!! | TCATAATTTGGTAACTTTTC+TGG | + | chr1.4:79558855-79558874 | None:intergenic | 25.0% |
| !!! | TGATTAATTTGTTAGGAGTA+GGG | - | chr1.4:79557972-79557991 | MS.gene070957:intron | 25.0% |
| !!! | TTGCATGATTTTAATTATGC+AGG | - | chr1.4:79559565-79559584 | MS.gene070957:intron | 25.0% |
| !!! | TTTTTCAGGGAAAAGAAAAA+GGG | + | chr1.4:79557664-79557683 | None:intergenic | 25.0% |
| AAAGAGGAATAATACCTTGT+TGG | + | chr1.4:79557578-79557597 | None:intergenic | 30.0% | |
| AAGAGGAATAATACCTTGTT+GGG | + | chr1.4:79557577-79557596 | None:intergenic | 30.0% | |
| AGTAATTAGCAGTAGCATAT+GGG | - | chr1.4:79559676-79559695 | MS.gene070957:intron | 30.0% | |
| GAGACTGTAATTATTGAGTT+GGG | - | chr1.4:79557898-79557917 | MS.gene070957:intron | 30.0% | |
| GCACATGATATAAACAAGAT+TGG | + | chr1.4:79558141-79558160 | None:intergenic | 30.0% | |
| GGAAAAAAAAAATGAACGAG+AGG | + | chr1.4:79557602-79557621 | None:intergenic | 30.0% | |
| GGATGAGAGCAATTATATTA+AGG | - | chr1.4:79559138-79559157 | MS.gene070957:intron | 30.0% | |
| TAGTAATTAGCAGTAGCATA+TGG | - | chr1.4:79559675-79559694 | MS.gene070957:intron | 30.0% | |
| TGAGACTGTAATTATTGAGT+TGG | - | chr1.4:79557897-79557916 | MS.gene070957:intron | 30.0% | |
| TTCGCATATGCATGTTTATT+TGG | + | chr1.4:79558642-79558661 | None:intergenic | 30.0% | |
| ! | GCAATATATCAAGACTTTTG+TGG | - | chr1.4:79559751-79559770 | MS.gene070957:intron | 30.0% |
| ! | TGATTTTCTATTAGCAACAG+AGG | + | chr1.4:79559203-79559222 | None:intergenic | 30.0% |
| ! | TTTAGGTTACTTTGATGTGA+GGG | - | chr1.4:79559030-79559049 | MS.gene070957:CDS | 30.0% |
| !! | ATGTCTGCATTTTAACATTC+CGG | - | chr1.4:79558764-79558783 | MS.gene070957:intron | 30.0% |
| !! | ATTAATTTGTTAGGAGTAGG+GGG | - | chr1.4:79557974-79557993 | MS.gene070957:intron | 30.0% |
| !! | ATTATTGAGTTGGGTTTGAT+AGG | - | chr1.4:79557907-79557926 | MS.gene070957:intron | 30.0% |
| !! | CTTCCTATCATTTTTATCTG+AGG | - | chr1.4:79558797-79558816 | MS.gene070957:intron | 30.0% |
| !! | GATTAATTTGTTAGGAGTAG+GGG | - | chr1.4:79557973-79557992 | MS.gene070957:intron | 30.0% |
| !! | GTGATTAATTTGTTAGGAGT+AGG | - | chr1.4:79557971-79557990 | MS.gene070957:intron | 30.0% |
| !! | TTACATTTTGTGTTGTTGAG+AGG | - | chr1.4:79558204-79558223 | MS.gene070957:intron | 30.0% |
| !!! | TTTCATACGTCGTTTTTCAT+AGG | - | chr1.4:79558251-79558270 | MS.gene070957:CDS | 30.0% |
| AAAAAGATTCGTGAAGAACG+TGG | - | chr1.4:79558545-79558564 | MS.gene070957:intron | 35.0% | |
| AAAATGAACGAGAGGTAAAG+AGG | + | chr1.4:79557594-79557613 | None:intergenic | 35.0% | |
| AGAGGAATAATACCTTGTTG+GGG | + | chr1.4:79557576-79557595 | None:intergenic | 35.0% | |
| AGTTCTTCAAGCATGGTATA+TGG | - | chr1.4:79558287-79558306 | MS.gene070957:CDS | 35.0% | |
| CATTTGACGTCAAAACGAAA+AGG | + | chr1.4:79558747-79558766 | None:intergenic | 35.0% | |
| CGTGTTAATATTGCAGAACT+TGG | - | chr1.4:79558470-79558489 | MS.gene070957:CDS | 35.0% | |
| CTAGTTAAATCATACCTTGC+AGG | + | chr1.4:79559653-79559672 | None:intergenic | 35.0% | |
| GAGGTTCGACATAAATTATC+TGG | + | chr1.4:79559706-79559725 | None:intergenic | 35.0% | |
| GTGCCTCAGATAAAAATGAT+AGG | + | chr1.4:79558803-79558822 | None:intergenic | 35.0% | |
| TGAGAGGTTGTAGAAATAAG+AGG | - | chr1.4:79558220-79558239 | MS.gene070957:CDS | 35.0% | |
| TGCTCTCATCCAATGTAAAA+CGG | + | chr1.4:79559129-79559148 | None:intergenic | 35.0% | |
| TGGATAACAGACTATGAAGT+TGG | + | chr1.4:79558057-79558076 | None:intergenic | 35.0% | |
| ! | ATTTGGTAACTTAACAGGGT+AGG | + | chr1.4:79558996-79559015 | None:intergenic | 35.0% |
| ! | CTTTAGGTTACTTTGATGTG+AGG | - | chr1.4:79559029-79559048 | MS.gene070957:CDS | 35.0% |
| ! | GCATGTTTATTTGGAGTAGT+GGG | + | chr1.4:79558633-79558652 | None:intergenic | 35.0% |
| ! | GGATGTGATTGCAAAGATTT+TGG | - | chr1.4:79559383-79559402 | MS.gene070957:intron | 35.0% |
| ! | TATCAAGACTTTTGTGGAGA+AGG | - | chr1.4:79559757-79559776 | MS.gene070957:intron | 35.0% |
| ! | TGCATGTTTATTTGGAGTAG+TGG | + | chr1.4:79558634-79558653 | None:intergenic | 35.0% |
| ! | TTCGATAAAGCACTTGTACA+TGG | + | chr1.4:79558077-79558096 | None:intergenic | 35.0% |
| ! | TTTATTTGGAGTAGTGGGAA+AGG | + | chr1.4:79558628-79558647 | None:intergenic | 35.0% |
| !! | AGGGGGATTGATTTGTATTA+GGG | - | chr1.4:79557991-79558010 | MS.gene070957:intron | 35.0% |
| !! | TAGGGGGATTGATTTGTATT+AGG | - | chr1.4:79557990-79558009 | MS.gene070957:intron | 35.0% |
| !! | TTTTTGTTGGTGAGCCAATT+TGG | - | chr1.4:79559597-79559616 | MS.gene070957:intron | 35.0% |
| AAACGGTGATAAATTCCAGC+AGG | + | chr1.4:79559112-79559131 | None:intergenic | 40.0% | |
| AATATTGCGTAGGAGGTTCA+GGG | + | chr1.4:79558023-79558042 | None:intergenic | 40.0% | |
| ACCTAAGGAGTTTGTCTCAT+TGG | - | chr1.4:79558350-79558369 | MS.gene070957:intron | 40.0% | |
| ACGCCAAAGTAATATTGCGT+AGG | + | chr1.4:79558033-79558052 | None:intergenic | 40.0% | |
| ACTCCTTAGGTTCTTTGTGA+TGG | + | chr1.4:79558341-79558360 | None:intergenic | 40.0% | |
| AGAACGTGGTTACTCTTACA+TGG | - | chr1.4:79558559-79558578 | MS.gene070957:intron | 40.0% | |
| ATGCTTGAAGAACTTCCTCT+CGG | + | chr1.4:79558281-79558300 | None:intergenic | 40.0% | |
| ATTCGTGTATGGGTGAAGAA+AGG | - | chr1.4:79559070-79559089 | MS.gene070957:CDS | 40.0% | |
| CACAACAGGACTTCCAAAAA+GGG | + | chr1.4:79559329-79559348 | None:intergenic | 40.0% | |
| CCAAAGTAATATTGCGTAGG+AGG | + | chr1.4:79558030-79558049 | None:intergenic | 40.0% | |
| CCTCCTACGCAATATTACTT+TGG | - | chr1.4:79558027-79558046 | MS.gene070957:intron | 40.0% | |
| CGATTGTATGGAGTCCAAAT+TGG | + | chr1.4:79559614-79559633 | None:intergenic | 40.0% | |
| CGCATTGAAATCGCATTATG+AGG | + | chr1.4:79559725-79559744 | None:intergenic | 40.0% | |
| CTCCTTAGGTTCTTTGTGAT+GGG | + | chr1.4:79558340-79558359 | None:intergenic | 40.0% | |
| GAGGAATAATACCTTGTTGG+GGG | + | chr1.4:79557575-79557594 | None:intergenic | 40.0% | |
| GTAGCAGTAGGCATCTTATT+AGG | + | chr1.4:79558176-79558195 | None:intergenic | 40.0% | |
| TAATATTGCGTAGGAGGTTC+AGG | + | chr1.4:79558024-79558043 | None:intergenic | 40.0% | |
| TCCAATGAGACAAACTCCTT+AGG | + | chr1.4:79558354-79558373 | None:intergenic | 40.0% | |
| TCCTTAGGTTCTTTGTGATG+GGG | + | chr1.4:79558339-79558358 | None:intergenic | 40.0% | |
| TGGATCTGTTTCAGGGTTAT+CGG | + | chr1.4:79558519-79558538 | None:intergenic | 40.0% | |
| TTGCAGGAAGATGATCATGT+GGG | + | chr1.4:79559637-79559656 | None:intergenic | 40.0% | |
| ! | GGAATGATCATTTTACCTGC+TGG | - | chr1.4:79559094-79559113 | MS.gene070957:intron | 40.0% |
| ! | TTTTCTGCAGGATGTTTGTG+AGG | - | chr1.4:79558824-79558843 | MS.gene070957:CDS | 40.0% |
| !!! | CAGGCATTGCGATTTTTTGT+TGG | - | chr1.4:79559584-79559603 | MS.gene070957:intron | 40.0% |
| !!! | TCACGAATCTTTTTCAGCTC+TGG | + | chr1.4:79558539-79558558 | None:intergenic | 40.0% |
| AATGCGATTTCAATGCGCAG+AGG | - | chr1.4:79559728-79559747 | MS.gene070957:intron | 45.0% | |
| ATGAGGCTTGGATTCGTGTA+TGG | - | chr1.4:79559059-79559078 | MS.gene070957:CDS | 45.0% | |
| ATGCGATTTCAATGCGCAGA+GGG | - | chr1.4:79559729-79559748 | MS.gene070957:intron | 45.0% | |
| CACATGATCATCTTCCTGCA+AGG | - | chr1.4:79559636-79559655 | MS.gene070957:intron | 45.0% | |
| CACTTCCAGCGACACAATAA+CGG | + | chr1.4:79558929-79558948 | None:intergenic | 45.0% | |
| CTTGCAGGAAGATGATCATG+TGG | + | chr1.4:79559638-79559657 | None:intergenic | 45.0% | |
| GAGAGGAAGTTCTTCAAGCA+TGG | - | chr1.4:79558280-79558299 | MS.gene070957:CDS | 45.0% | |
| GCACAACAGGACTTCCAAAA+AGG | + | chr1.4:79559330-79559349 | None:intergenic | 45.0% | |
| GTAACAGCAACAGTAGCAGT+AGG | + | chr1.4:79558188-79558207 | None:intergenic | 45.0% | |
| GTAACTTAACAGGGTAGGCA+TGG | + | chr1.4:79558991-79559010 | None:intergenic | 45.0% | |
| GTCTCATTGGATCAACTTGC+TGG | - | chr1.4:79558363-79558382 | MS.gene070957:intron | 45.0% | |
| TCCCCATCACAAAGAACCTA+AGG | - | chr1.4:79558335-79558354 | MS.gene070957:intron | 45.0% | |
| TGAGGCTTGGATTCGTGTAT+GGG | - | chr1.4:79559060-79559079 | MS.gene070957:CDS | 45.0% | |
| TGATCATGTGGGCGATTGTA+TGG | + | chr1.4:79559626-79559645 | None:intergenic | 45.0% | |
| TGCTTGAAGAACTTCCTCTC+GGG | + | chr1.4:79558280-79558299 | None:intergenic | 45.0% | |
| ! | AGAGCATCTGCATACTGATG+AGG | - | chr1.4:79558899-79558918 | MS.gene070957:intron | 45.0% |
| ! | GATAGGAAGCATGACATAGC+CGG | + | chr1.4:79558786-79558805 | None:intergenic | 45.0% |
| ! | TTTTTCATAGGATCCCCGAG+AGG | - | chr1.4:79558263-79558282 | MS.gene070957:CDS | 45.0% |
| !! | ATCTGAGGCACATTTTCTGC+AGG | - | chr1.4:79558812-79558831 | MS.gene070957:CDS | 45.0% |
| !! | TCAGCTCTGGATCTGTTTCA+GGG | + | chr1.4:79558526-79558545 | None:intergenic | 45.0% |
| !! | TTCAGCTCTGGATCTGTTTC+AGG | + | chr1.4:79558527-79558546 | None:intergenic | 45.0% |
| CAGAACTTGGAGTCCTTAGC+TGG | - | chr1.4:79558483-79558502 | MS.gene070957:CDS | 50.0% | |
| CAGGACTTCCAAAAAGGGCA+CGG | + | chr1.4:79559324-79559343 | None:intergenic | 50.0% | |
| CGGCATCTAACTTCCAGCTA+AGG | + | chr1.4:79558499-79558518 | None:intergenic | 50.0% | |
| CGTGTATGGGTGAAGAAAGG+AGG | - | chr1.4:79559073-79559092 | MS.gene070957:CDS | 50.0% | |
| GAGATCCGTTATTGTGTCGC+TGG | - | chr1.4:79558921-79558940 | MS.gene070957:intron | 50.0% | |
| GCTTGAAGAACTTCCTCTCG+GGG | + | chr1.4:79558279-79558298 | None:intergenic | 50.0% | |
| TGATGTGAGGGATCGCAATG+AGG | - | chr1.4:79559042-79559061 | MS.gene070957:CDS | 50.0% | |
| ! | ACATTGTCCCGTGCCCTTTT+TGG | - | chr1.4:79559313-79559332 | MS.gene070957:intron | 50.0% |
| ! | AGGACTTCCAAAAAGGGCAC+GGG | + | chr1.4:79559323-79559342 | None:intergenic | 50.0% |
| ! | CGTTATTGTGTCGCTGGAAG+TGG | - | chr1.4:79558927-79558946 | MS.gene070957:intron | 50.0% |
| AAGCAGTGGCGTCAACAGCA+TGG | + | chr1.4:79559793-79559812 | None:intergenic | 55.0% | |
| GTGAAGGTCAGACGCACAAC+AGG | + | chr1.4:79559343-79559362 | None:intergenic | 55.0% | |
| TGAGGGATCGCAATGAGGCT+TGG | - | chr1.4:79559047-79559066 | MS.gene070957:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 79557565 | 79559814 | 79557565 | ID=MS.gene070957 |
| chr1.4 | mRNA | 79557565 | 79559814 | 79557565 | ID=MS.gene070957.t1;Parent=MS.gene070957 |
| chr1.4 | exon | 79559797 | 79559814 | 79559797 | ID=MS.gene070957.t1.exon1;Parent=MS.gene070957.t1 |
| chr1.4 | CDS | 79559797 | 79559814 | 79559797 | ID=cds.MS.gene070957.t1;Parent=MS.gene070957.t1 |
| chr1.4 | exon | 79558995 | 79559106 | 79558995 | ID=MS.gene070957.t1.exon2;Parent=MS.gene070957.t1 |
| chr1.4 | CDS | 79558995 | 79559106 | 79558995 | ID=cds.MS.gene070957.t1;Parent=MS.gene070957.t1 |
| chr1.4 | exon | 79558799 | 79558893 | 79558799 | ID=MS.gene070957.t1.exon3;Parent=MS.gene070957.t1 |
| chr1.4 | CDS | 79558799 | 79558893 | 79558799 | ID=cds.MS.gene070957.t1;Parent=MS.gene070957.t1 |
| chr1.4 | exon | 79558431 | 79558545 | 79558431 | ID=MS.gene070957.t1.exon4;Parent=MS.gene070957.t1 |
| chr1.4 | CDS | 79558431 | 79558545 | 79558431 | ID=cds.MS.gene070957.t1;Parent=MS.gene070957.t1 |
| chr1.4 | exon | 79558220 | 79558344 | 79558220 | ID=MS.gene070957.t1.exon5;Parent=MS.gene070957.t1 |
| chr1.4 | CDS | 79558220 | 79558344 | 79558220 | ID=cds.MS.gene070957.t1;Parent=MS.gene070957.t1 |
| chr1.4 | exon | 79557722 | 79557792 | 79557722 | ID=MS.gene070957.t1.exon6;Parent=MS.gene070957.t1 |
| chr1.4 | CDS | 79557722 | 79557792 | 79557722 | ID=cds.MS.gene070957.t1;Parent=MS.gene070957.t1 |
| chr1.4 | exon | 79557565 | 79557631 | 79557565 | ID=MS.gene070957.t1.exon7;Parent=MS.gene070957.t1 |
| chr1.4 | CDS | 79557565 | 79557631 | 79557565 | ID=cds.MS.gene070957.t1;Parent=MS.gene070957.t1 |
| Gene Sequence |
| Protein sequence |
