AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006455


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006455.t1 MTR_1g103690 98.154 325 6 0 1 325 1 325 0.0 634
MS.gene006455.t1 MTR_5g006340 94.462 325 18 0 1 325 1 325 0.0 572
MS.gene006455.t1 MTR_1g081610 87.963 324 39 0 1 324 1 324 0.0 532
MS.gene006455.t1 MTR_4g087490 71.069 318 92 0 8 325 47 364 6.01e-170 476
MS.gene006455.t1 MTR_1g081620 72.897 321 87 0 4 324 3 323 7.54e-165 462
MS.gene006455.t1 MTR_1g081625 73.438 320 85 0 5 324 4 323 2.83e-161 453
MS.gene006455.t1 MTR_4g087510 66.667 318 97 2 8 325 47 355 5.23e-157 443
MS.gene006455.t1 MTR_7g078070 62.025 316 120 0 6 321 59 374 2.88e-143 409
MS.gene006455.t1 MTR_7g078070 62.662 308 115 0 14 321 7 314 5.65e-141 401
MS.gene006455.t1 MTR_7g087110 63.175 315 106 1 7 321 64 368 2.88e-135 389
MS.gene006455.t1 MTR_4g087520 73.704 270 71 0 56 325 1 270 1.92e-133 380
MS.gene006455.t1 MTR_1g081640 69.965 283 85 0 3 285 2 284 2.22e-130 374
MS.gene006455.t1 MTR_7g078070 62.633 281 105 0 41 321 1 281 4.83e-128 367
MS.gene006455.t1 MTR_5g095670 29.178 353 191 6 12 307 48 398 5.97e-42 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006455.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 512
MS.gene006455.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 512
MS.gene006455.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 512
MS.gene006455.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 512
MS.gene006455.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 512
MS.gene006455.t1 AT3G59760 75.157 318 79 0 7 324 112 429 6.79e-165 466
MS.gene006455.t1 AT3G59760 75.157 318 79 0 7 324 112 429 9.68e-165 466
MS.gene006455.t1 AT2G43750 74.845 322 81 0 3 324 70 391 2.91e-164 463
MS.gene006455.t1 AT2G43750 74.845 322 81 0 3 324 70 391 2.91e-164 463
MS.gene006455.t1 AT3G04940 68.519 324 102 0 1 324 1 324 1.60e-156 441
MS.gene006455.t1 AT3G04940 68.519 324 102 0 1 324 1 324 1.60e-156 441
MS.gene006455.t1 AT5G28020 71.340 321 92 0 4 324 3 323 1.81e-155 438
MS.gene006455.t1 AT5G28020 71.340 321 92 0 4 324 3 323 1.81e-155 438
MS.gene006455.t1 AT5G28020 71.340 321 92 0 4 324 3 323 1.81e-155 438
MS.gene006455.t1 AT5G28020 71.340 321 92 0 4 324 3 323 1.81e-155 438
MS.gene006455.t1 AT5G28020 71.340 321 92 0 4 324 3 323 1.81e-155 438
MS.gene006455.t1 AT3G59760 76.207 290 69 0 7 296 112 401 5.87e-150 428
MS.gene006455.t1 AT3G22460 77.037 270 42 1 56 325 1 250 5.39e-149 419
MS.gene006455.t1 AT5G28030 68.847 321 100 0 4 324 3 323 2.06e-146 415
MS.gene006455.t1 AT5G28030 68.847 321 100 0 4 324 3 323 2.06e-146 415
MS.gene006455.t1 AT5G28030 68.847 321 100 0 4 324 3 323 2.06e-146 415
MS.gene006455.t1 AT5G28030 68.847 321 100 0 4 324 3 323 2.06e-146 415
MS.gene006455.t1 AT3G61440 61.859 312 119 0 10 321 51 362 1.31e-135 390
MS.gene006455.t1 AT3G03630 61.875 320 112 1 4 323 95 404 1.80e-131 380
MS.gene006455.t1 AT3G61440 63.158 266 98 0 56 321 1 266 1.67e-117 340
MS.gene006455.t1 AT3G22460 86.188 181 25 0 8 188 8 188 3.57e-113 326
MS.gene006455.t1 AT5G28030 66.935 248 82 0 4 251 3 250 3.44e-112 326
MS.gene006455.t1 AT3G61440 60.305 262 104 0 10 271 51 312 3.28e-109 321
MS.gene006455.t1 AT5G28020 70.042 237 71 0 88 324 1 237 1.05e-103 303
MS.gene006455.t1 AT3G61440 62.083 240 91 0 82 321 2 241 3.54e-103 303
MS.gene006455.t1 AT1G55880 28.177 362 200 7 4 307 36 395 1.38e-39 144
MS.gene006455.t1 AT1G55880 30.833 240 124 4 12 210 44 282 5.71e-33 125

Find 89 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACAAATAGGCCTTCTTTA+AGG 0.116413 1.2:+77233874 None:intergenic
AGAACCATTCTTCTATCTTT+TGG 0.182076 1.2:-77235060 MS.gene006455:CDS
GCCCCTTTCATTCCCTTTGC+AGG 0.215231 1.2:+77235015 None:intergenic
TTTATATTATGCAGCTGTTT+GGG 0.243063 1.2:-77234569 MS.gene006455:intron
TGCTGCCAAACTGGAATTAA+TGG 0.244427 1.2:-77235825 MS.gene006455:CDS
ACTAAAGATGACCTTGATAT+TGG 0.278605 1.2:+77234694 None:intergenic
GGGCATCGGATTGGCCTTCT+TGG 0.298899 1.2:-77235142 MS.gene006455:CDS
GATGCATTTGTTAGTGGTAT+AGG 0.323643 1.2:-77234767 MS.gene006455:CDS
ACTCACTTCTGTAACATCTT+TGG 0.326839 1.2:+77236017 None:intergenic
TACAAATAGGCCTTCTTTAA+GGG 0.332946 1.2:+77233875 None:intergenic
TGCCACTTGTTGGCTCAATA+AGG 0.334733 1.2:+77235169 None:intergenic
TTCAAATTGCTGAAGGATAT+AGG 0.362222 1.2:+77234951 None:intergenic
ATATTTCCCAACACCTGTTA+TGG 0.367102 1.2:+77234733 None:intergenic
AAACCACTGGTCCAGAGATA+TGG 0.372068 1.2:-77234811 MS.gene006455:CDS
TGCTCGAGTTGCTGCCAAAC+TGG 0.377214 1.2:-77235834 MS.gene006455:CDS
ATAGATACCTTTGGATTGGC+AGG 0.410843 1.2:+77234925 None:intergenic
AAAGTTGATGCATTTGTTAG+TGG 0.411743 1.2:-77234773 MS.gene006455:CDS
TGCTGAAGGATATAGGCATT+TGG 0.414477 1.2:+77234958 None:intergenic
ATGCCCGTATTGCCACTTGT+TGG 0.417507 1.2:+77235159 None:intergenic
CCTGTGCCTTTCCATATCTC+TGG 0.417592 1.2:+77234800 None:intergenic
AATGATAAGCTTGTAGCCTT+TGG 0.418235 1.2:+77235113 None:intergenic
GGTACTGGTGGTACCATAAC+AGG 0.426966 1.2:-77234746 MS.gene006455:CDS
ATCTTCTGTGCTGTTTGAAT+CGG 0.434360 1.2:-77233506 MS.gene006455:CDS
CTTTCAAGACTCATTGAAGC+AGG 0.439398 1.2:+77235084 None:intergenic
GATATAGGCATTTGGAGTCT+TGG 0.449955 1.2:+77234966 None:intergenic
AGCTGCTGCAGCAGCTCCAG+AGG 0.454114 1.2:+77233730 None:intergenic
AAGCTTCTTGCCCTTAAAGA+AGG 0.457267 1.2:-77233885 MS.gene006455:CDS
GACAGTACAGGACTTTCAAC+TGG 0.465463 1.2:+77234540 None:intergenic
TGGTTCCATTAATTCCAGTT+TGG 0.469327 1.2:+77235820 None:intergenic
ATTCAAACAGCACAGAAGAT+AGG 0.476594 1.2:+77233509 None:intergenic
GAATTCATGGTTCAAAAGTC+AGG 0.476630 1.2:+77233464 None:intergenic
TGAGCCAACAAGTGGCAATA+CGG 0.481402 1.2:-77235163 MS.gene006455:CDS
AAGATTCAAGGGATTGGTGC+TGG 0.484894 1.2:-77234394 MS.gene006455:CDS
GCCTTTGGCTGCTGCCAAGA+AGG 0.490662 1.2:+77235128 None:intergenic
GATTGCTGATGCAGAGGAGA+AGG 0.491875 1.2:-77235633 MS.gene006455:CDS
AGAGCAAAATTCCAATATCA+AGG 0.499203 1.2:-77234705 MS.gene006455:intron
AGGTACCTCTCACCAAAGCT+AGG 0.500820 1.2:+77233529 None:intergenic
ACCATGGCAGTTGAAAGGTC+TGG 0.505654 1.2:-77236045 MS.gene006455:CDS
GTAGATAGATACCTTTGGAT+TGG 0.506283 1.2:+77234921 None:intergenic
TTTGTTAGTGGTATAGGTAC+TGG 0.507290 1.2:-77234761 MS.gene006455:CDS
CTAGGTCCACACAAGATTCA+AGG 0.507556 1.2:-77234406 MS.gene006455:intron
GGGACTAATTACGCCTGGCC+AGG 0.509762 1.2:-77235612 MS.gene006455:intron
TGGCAATACGGGCATCGGAT+TGG 0.510586 1.2:-77235151 MS.gene006455:CDS
CCACACAAGATTCAAGGGAT+TGG 0.512912 1.2:-77234400 MS.gene006455:CDS
GCCTTCTTGGCAGCAGCCAA+AGG 0.516788 1.2:-77235129 MS.gene006455:CDS
TGCTGTTTGAATCGGTGAGA+CGG 0.517705 1.2:-77233498 MS.gene006455:CDS
GTACTGTCCGGAGGAAAGCC+TGG 0.517823 1.2:-77234525 MS.gene006455:intron
TAACAAGTACCAACCTGGCC+AGG 0.519163 1.2:+77235599 None:intergenic
TCCAGACCTTTCAACTGCCA+TGG 0.522956 1.2:+77236044 None:intergenic
GAGCCAACAAGTGGCAATAC+GGG 0.523351 1.2:-77235162 MS.gene006455:CDS
ACAAGTGGCAATACGGGCAT+CGG 0.529614 1.2:-77235156 MS.gene006455:CDS
TATTATGCAGCTGTTTGGGG+TGG 0.530340 1.2:-77234565 MS.gene006455:intron
TAACTAACCAGGCTTTCCTC+CGG 0.534921 1.2:+77234518 None:intergenic
GGCTTTCCTCCGGACAGTAC+AGG 0.535171 1.2:+77234528 None:intergenic
GATCCTGCAAAGGGAATGAA+AGG 0.537784 1.2:-77235018 MS.gene006455:CDS
GTGGTACCATAACAGGTGTT+GGG 0.539844 1.2:-77234739 MS.gene006455:CDS
TTTCCATATCTCTGGACCAG+TGG 0.541184 1.2:+77234808 None:intergenic
TTATATTATGCAGCTGTTTG+GGG 0.546665 1.2:-77234568 MS.gene006455:intron
GGTGGTACCATAACAGGTGT+TGG 0.549091 1.2:-77234740 MS.gene006455:CDS
AGCTCCAAAAGATAGAAGAA+TGG 0.556491 1.2:+77235056 None:intergenic
GTTGAAAGTCCTGTACTGTC+CGG 0.559552 1.2:-77234537 MS.gene006455:CDS
GAGAAGGGACTAATTACGCC+TGG 0.562602 1.2:-77235617 MS.gene006455:CDS
GCTGTTTGAATCGGTGAGAC+GGG 0.567929 1.2:-77233497 MS.gene006455:CDS
CTGAAACCATGGCAGTTGAA+AGG 0.570234 1.2:-77236050 None:intergenic
CATGCTCTAGTGTAAAAGAC+AGG 0.572827 1.2:-77235799 MS.gene006455:intron
GTTCTGACAGATCCTGCAAA+GGG 0.575035 1.2:-77235027 MS.gene006455:CDS
TAGATACCTTTGGATTGGCA+GGG 0.577990 1.2:+77234926 None:intergenic
ATCCTGCAAAGGGAATGAAA+GGG 0.578172 1.2:-77235017 MS.gene006455:CDS
GTCCTTATTGAGCCAACAAG+TGG 0.589600 1.2:-77235171 MS.gene006455:CDS
CCAGAGATATGGAAAGGCAC+AGG 0.593497 1.2:-77234800 MS.gene006455:CDS
AGTATATCTGAATAAAATCA+CGG 0.598658 1.2:-77235867 MS.gene006455:CDS
GAGATATGGAAAGGCACAGG+AGG 0.606059 1.2:-77234797 MS.gene006455:CDS
ATTGCTGATGCAGAGGAGAA+GGG 0.608166 1.2:-77235632 MS.gene006455:CDS
TAGTATGATTGCTGATGCAG+AGG 0.611040 1.2:-77235639 MS.gene006455:CDS
TGAAAACCCTGCCAATCCAA+AGG 0.611571 1.2:-77234932 MS.gene006455:intron
TAGGTCCACACAAGATTCAA+GGG 0.617279 1.2:-77234405 MS.gene006455:CDS
TATCTGAATAAAATCACGGA+TGG 0.622319 1.2:-77235863 MS.gene006455:CDS
GGTTCTGACAGATCCTGCAA+AGG 0.622378 1.2:-77235028 MS.gene006455:CDS
CCAATCCCTTGAATCTTGTG+TGG 0.626382 1.2:+77234400 None:intergenic
GGTACCTCTCACCAAAGCTA+GGG 0.626738 1.2:+77233530 None:intergenic
AGACTAACGTCCAATACCCC+AGG 0.626927 1.2:+77234364 None:intergenic
CAGGTGCATTATGAAACCAC+TGG 0.627492 1.2:-77234824 MS.gene006455:CDS
TTTATTCAGATATACTAATG+GGG 0.635434 1.2:+77235874 None:intergenic
GTTAGTGGTATAGGTACTGG+TGG 0.642131 1.2:-77234758 MS.gene006455:CDS
TCCTGCAAAGGGAATGAAAG+GGG 0.649085 1.2:-77235016 MS.gene006455:CDS
AGATATGGAAAGGCACAGGA+GGG 0.656003 1.2:-77234796 MS.gene006455:CDS
ACTGGTCCAGAGATATGGAA+AGG 0.666229 1.2:-77234806 MS.gene006455:CDS
GAAAGTCCTGTACTGTCCGG+AGG 0.670657 1.2:-77234534 MS.gene006455:CDS
GTTTGAATCGGTGAGACGGG+AGG 0.688551 1.2:-77233494 MS.gene006455:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAATATTTTGAATATC+TGG - chr1.2:77235880-77235899 MS.gene006455:CDS 10.0%
!! ATTTATAACATAAATTGCAA+AGG + chr1.2:77233838-77233857 None:intergenic 15.0%
!! GTATGTTATAGAAAAAAAAA+GGG - chr1.2:77235911-77235930 MS.gene006455:intron 15.0%
!! TAAAACAATATTCATATTAG+AGG + chr1.2:77235749-77235768 None:intergenic 15.0%
!! TAAGAAACATTTAATTAGAA+AGG + chr1.2:77233562-77233581 None:intergenic 15.0%
!!! ATTTTATTCAGATATACTAA+TGG + chr1.2:77233641-77233660 None:intergenic 15.0%
!!! TCTAATATGAATATTGTTTT+AGG - chr1.2:77235748-77235767 MS.gene006455:intron 15.0%
!!! TTTTATTCAGATATACTAAT+GGG + chr1.2:77233640-77233659 None:intergenic 15.0%
!! AAGATATATTTAGGTATCAA+AGG + chr1.2:77235254-77235273 None:intergenic 20.0%
!! AATTTAACTGTTAAAGTTTC+TGG - chr1.2:77235379-77235398 MS.gene006455:intron 20.0%
!! AGTATATCTGAATAAAATCA+CGG - chr1.2:77233643-77233662 MS.gene006455:intron 20.0%
!! AGTTAAATTATTTGAGAGAA+TGG + chr1.2:77235368-77235387 None:intergenic 20.0%
!! CAAGTCATTAAGATATATTT+AGG + chr1.2:77235263-77235282 None:intergenic 20.0%
!! GCAATTTATGTTATAAATGT+AGG - chr1.2:77233840-77233859 MS.gene006455:intron 20.0%
!! GGTATGTTATAGAAAAAAAA+AGG - chr1.2:77235910-77235929 MS.gene006455:intron 20.0%
!! TAATTAAATGTTTCTTACTG+TGG - chr1.2:77233565-77233584 MS.gene006455:intron 20.0%
!! TTATGTTATAAATGTAGGAT+TGG - chr1.2:77233845-77233864 MS.gene006455:intron 20.0%
!! TTGAAACAAAACAAGAAATT+AGG + chr1.2:77234919-77234938 None:intergenic 20.0%
!! TTTATTCAGATATACTAATG+GGG + chr1.2:77233639-77233658 None:intergenic 20.0%
!!! ATATGAATATTGTTTTAGGT+TGG - chr1.2:77235752-77235771 MS.gene006455:intron 20.0%
!!! ATGTCTTTTTGCAATTTTTT+TGG - chr1.2:77235521-77235540 MS.gene006455:intron 20.0%
!!! CTCATATATTATTTGAGTTT+TGG - chr1.2:77233761-77233780 MS.gene006455:intron 20.0%
!!! GTTTATTTTGTATAGTTGAT+CGG - chr1.2:77233608-77233627 MS.gene006455:intron 20.0%
!!! TGACAATTTTCATTTTGATA+TGG - chr1.2:77235944-77235963 MS.gene006455:intron 20.0%
!!! TTGTGAATGTAATTTTTAGA+TGG - chr1.2:77235489-77235508 MS.gene006455:intron 20.0%
! AAACAAAACAAGAAATTAGG+AGG + chr1.2:77234916-77234935 None:intergenic 25.0%
! AAGCCAATAGTAAAAGATAA+AGG + chr1.2:77235315-77235334 None:intergenic 25.0%
! AGATTAAAATGAAAGTTCGT+AGG - chr1.2:77233935-77233954 MS.gene006455:intron 25.0%
! CAAAATAAACAACAGACATT+AGG + chr1.2:77233598-77233617 None:intergenic 25.0%
! GAGAAATACTAGTACTAATT+TGG - chr1.2:77234082-77234101 MS.gene006455:intron 25.0%
! GTTATAACTTATAACTAACC+AGG + chr1.2:77235006-77235025 None:intergenic 25.0%
! TAAAAGACAGGTAATCATTT+AGG - chr1.2:77233723-77233742 MS.gene006455:CDS 25.0%
! TACAAAAGATTGTGAAATAG+CGG + chr1.2:77234192-77234211 None:intergenic 25.0%
! TATGTAAGATTTAGTAAACC+AGG + chr1.2:77235439-77235458 None:intergenic 25.0%
! TGAATACTAGGAAATATGAT+AGG - chr1.2:77234056-77234075 MS.gene006455:intron 25.0%
! TTTATATTATGCAGCTGTTT+GGG - chr1.2:77234941-77234960 MS.gene006455:CDS 25.0%
!! ATTATTTGAGAGAATGGTTT+TGG + chr1.2:77235362-77235381 None:intergenic 25.0%
!! CAACTTTTATGTTGAATACT+AGG - chr1.2:77234044-77234063 MS.gene006455:intron 25.0%
!! TCTCCTTTATCTTTTACTAT+TGG - chr1.2:77235309-77235328 MS.gene006455:intron 25.0%
!! TTTTATATTATGCAGCTGTT+TGG - chr1.2:77234940-77234959 MS.gene006455:CDS 25.0%
AAAATGAAAGTTCGTAGGAT+TGG - chr1.2:77233940-77233959 MS.gene006455:intron 30.0%
AATGAGTAGATAGATACCTT+TGG + chr1.2:77234597-77234616 None:intergenic 30.0%
ACTAAAGATGACCTTGATAT+TGG + chr1.2:77234819-77234838 None:intergenic 30.0%
ACTCATTTGTTCTACAACTT+TGG - chr1.2:77234610-77234629 MS.gene006455:intron 30.0%
AGAGCAAAATTCCAATATCA+AGG - chr1.2:77234805-77234824 MS.gene006455:CDS 30.0%
AGTGTTATCACAGAAAATAG+TGG - chr1.2:77234130-77234149 MS.gene006455:intron 30.0%
ATATATACCAGTGATCAGTT+TGG + chr1.2:77234292-77234311 None:intergenic 30.0%
ATCAAACTTAATACGTGATG+GGG + chr1.2:77235224-77235243 None:intergenic 30.0%
CACAAGATAAGTTTGTATTG+TGG + chr1.2:77235474-77235493 None:intergenic 30.0%
CATCAAACTTAATACGTGAT+GGG + chr1.2:77235225-77235244 None:intergenic 30.0%
GTTATCATCGTTGTATTTAC+AGG - chr1.2:77234667-77234686 MS.gene006455:intron 30.0%
GTTTCTTAGTTCATTATCAC+TGG - chr1.2:77234106-77234125 MS.gene006455:intron 30.0%
TAAACCTGATATGTGTGATT+TGG - chr1.2:77235569-77235588 MS.gene006455:intron 30.0%
TACAAATAGGCCTTCTTTAA+GGG + chr1.2:77235638-77235657 None:intergenic 30.0%
TAGTTAATGGTTGACAACTT+TGG - chr1.2:77234633-77234652 MS.gene006455:intron 30.0%
TATCTGAATAAAATCACGGA+TGG - chr1.2:77233647-77233666 MS.gene006455:intron 30.0%
TATTTAACCAAACTGATCAC+TGG - chr1.2:77234282-77234301 MS.gene006455:intron 30.0%
TCATCAAACTTAATACGTGA+TGG + chr1.2:77235226-77235245 None:intergenic 30.0%
TTAACGATGTATAGTTCATC+TGG + chr1.2:77234010-77234029 None:intergenic 30.0%
TTACAAATAGGCCTTCTTTA+AGG + chr1.2:77235639-77235658 None:intergenic 30.0%
TTATATTATGCAGCTGTTTG+GGG - chr1.2:77234942-77234961 MS.gene006455:CDS 30.0%
TTCAAATTGCTGAAGGATAT+AGG + chr1.2:77234562-77234581 None:intergenic 30.0%
! AGAACCATTCTTCTATCTTT+TGG - chr1.2:77234450-77234469 MS.gene006455:intron 30.0%
! TACTATTTTACTGTCGTACT+TGG - chr1.2:77235709-77235728 MS.gene006455:intron 30.0%
! TCTACAACTTTGGTAGTTAA+TGG - chr1.2:77234620-77234639 MS.gene006455:intron 30.0%
! TTGTACTAAATAGAGCATCA+CGG - chr1.2:77234207-77234226 MS.gene006455:intron 30.0%
!! AAAGTTGATGCATTTGTTAG+TGG - chr1.2:77234737-77234756 MS.gene006455:CDS 30.0%
!! TGGTCTTTTTGCTATCTTAA+TGG + chr1.2:77235807-77235826 None:intergenic 30.0%
!! TTTACTATTGGCTTCCTAAA+TGG - chr1.2:77235321-77235340 MS.gene006455:intron 30.0%
!! TTTTCATTTTGATATGGTGC+AGG - chr1.2:77235950-77235969 MS.gene006455:intron 30.0%
AATGATAAGCTTGTAGCCTT+TGG + chr1.2:77234400-77234419 None:intergenic 35.0%
AATGCACAAAAAGCCAATTG+TGG - chr1.2:77235404-77235423 MS.gene006455:intron 35.0%
AATTGCCATGATAAACGTCT+AGG - chr1.2:77235086-77235105 MS.gene006455:CDS 35.0%
ACAACACTAAGTGCAAGATT+TGG - chr1.2:77234855-77234874 MS.gene006455:intron 35.0%
ACAAGAAATTAGGAGGAAAG+AGG + chr1.2:77234909-77234928 None:intergenic 35.0%
ACTCACTTCTGTAACATCTT+TGG + chr1.2:77233496-77233515 None:intergenic 35.0%
AGCTCCAAAAGATAGAAGAA+TGG + chr1.2:77234457-77234476 None:intergenic 35.0%
ATATTTCCCAACACCTGTTA+TGG + chr1.2:77234780-77234799 None:intergenic 35.0%
ATCTTTAACAAGTACCAACC+TGG + chr1.2:77233919-77233938 None:intergenic 35.0%
ATTCAAACAGCACAGAAGAT+AGG + chr1.2:77236004-77236023 None:intergenic 35.0%
CAATTGTGGACTTAAAATCC+TGG - chr1.2:77235418-77235437 MS.gene006455:intron 35.0%
GGTATATATGTTGTTGCATG+CGG - chr1.2:77234303-77234322 MS.gene006455:intron 35.0%
GTAGATAGATACCTTTGGAT+TGG + chr1.2:77234592-77234611 None:intergenic 35.0%
TGGTTCCATTAATTCCAGTT+TGG + chr1.2:77233693-77233712 None:intergenic 35.0%
TTTGTTAGTGGTATAGGTAC+TGG - chr1.2:77234749-77234768 MS.gene006455:CDS 35.0%
! ATAAGCTTTCCAGCATTTTC+TGG + chr1.2:77235827-77235846 None:intergenic 35.0%
! CGAGCAACATTCTTTTGAAT+TGG - chr1.2:77233796-77233815 MS.gene006455:intron 35.0%
! GATGCATTTGTTAGTGGTAT+AGG - chr1.2:77234743-77234762 MS.gene006455:CDS 35.0%
! TTTTGAATATCTGGCACAGT+TGG - chr1.2:77235889-77235908 MS.gene006455:CDS 35.0%
!! ATCTTCTGTGCTGTTTGAAT+CGG - chr1.2:77236004-77236023 MS.gene006455:intron 35.0%
!! CAGGATTTTAAGTCCACAAT+TGG + chr1.2:77235420-77235439 None:intergenic 35.0%
!!! TTTGAGAGAATGGTTTTGGT+AGG + chr1.2:77235358-77235377 None:intergenic 35.0%
!!! TTTTAGGTTGGAATATCCTC+TGG - chr1.2:77235764-77235783 MS.gene006455:intron 35.0%
AAATTAGGAGGAAAGAGGAG+AGG + chr1.2:77234904-77234923 None:intergenic 40.0%
AAGCTTCTTGCCCTTAAAGA+AGG - chr1.2:77235625-77235644 MS.gene006455:CDS 40.0%
ATCCTGCAAAGGGAATGAAA+GGG - chr1.2:77234493-77234512 MS.gene006455:intron 40.0%
CACGAACGAAGCTTACAAAT+AGG + chr1.2:77235651-77235670 None:intergenic 40.0%
CATGCTCTAGTGTAAAAGAC+AGG - chr1.2:77233711-77233730 MS.gene006455:CDS 40.0%
CTTTCAAGACTCATTGAAGC+AGG + chr1.2:77234429-77234448 None:intergenic 40.0%
GCAAAAAGACCAGAAAATGC+TGG - chr1.2:77235815-77235834 MS.gene006455:CDS 40.0%
GCTATAACACTGTTGCATAG+CGG + chr1.2:77234168-77234187 None:intergenic 40.0%
TAGGTCCACACAAGATTCAA+GGG - chr1.2:77235105-77235124 MS.gene006455:CDS 40.0%
TAGTATGATTGCTGATGCAG+AGG - chr1.2:77233871-77233890 MS.gene006455:intron 40.0%
TCTGCCAAATCACACATATC+AGG + chr1.2:77235576-77235595 None:intergenic 40.0%
TCTTGCACTTAGTGTTGTCT+CGG + chr1.2:77234853-77234872 None:intergenic 40.0%
TGCTGAAGGATATAGGCATT+TGG + chr1.2:77234555-77234574 None:intergenic 40.0%
TGCTGCCAAACTGGAATTAA+TGG - chr1.2:77233685-77233704 MS.gene006455:CDS 40.0%
! CAGGGTTTTCAAATTGCTGA+AGG + chr1.2:77234569-77234588 None:intergenic 40.0%
! CTGTCTTTTACACTAGAGCA+TGG + chr1.2:77233713-77233732 None:intergenic 40.0%
! GATATAGGCATTTGGAGTCT+TGG + chr1.2:77234547-77234566 None:intergenic 40.0%
!! AGGAAGGGTTTTAGCCATTT+AGG + chr1.2:77235338-77235357 None:intergenic 40.0%
!! ATAGATACCTTTGGATTGGC+AGG + chr1.2:77234588-77234607 None:intergenic 40.0%
!! TAGATACCTTTGGATTGGCA+GGG + chr1.2:77234587-77234606 None:intergenic 40.0%
!!! AGAGAATGGTTTTGGTAGGA+AGG + chr1.2:77235354-77235373 None:intergenic 40.0%
!!! GAGAATGGTTTTGGTAGGAA+GGG + chr1.2:77235353-77235372 None:intergenic 40.0%
!!! TCTATCTTTTGGAGCTGAGT+TGG - chr1.2:77234461-77234480 MS.gene006455:intron 40.0%
AAACCACTGGTCCAGAGATA+TGG - chr1.2:77234699-77234718 MS.gene006455:intron 45.0%
ACTGGTCCAGAGATATGGAA+AGG - chr1.2:77234704-77234723 MS.gene006455:intron 45.0%
ATAGCAGCGCTATTGCTTAG+CGG + chr1.2:77234256-77234275 None:intergenic 45.0%
ATTGCTGATGCAGAGGAGAA+GGG - chr1.2:77233878-77233897 MS.gene006455:CDS 45.0%
CAGGTGCATTATGAAACCAC+TGG - chr1.2:77234686-77234705 MS.gene006455:intron 45.0%
CCAATCCCTTGAATCTTGTG+TGG + chr1.2:77235113-77235132 None:intergenic 45.0%
CCACACAAGATTCAAGGGAT+TGG - chr1.2:77235110-77235129 MS.gene006455:CDS 45.0%
CTAGGTCCACACAAGATTCA+AGG - chr1.2:77235104-77235123 MS.gene006455:CDS 45.0%
GACAGTACAGGACTTTCAAC+TGG + chr1.2:77234973-77234992 None:intergenic 45.0%
GATCCTGCAAAGGGAATGAA+AGG - chr1.2:77234492-77234511 MS.gene006455:intron 45.0%
GTCCTTATTGAGCCAACAAG+TGG - chr1.2:77234339-77234358 MS.gene006455:intron 45.0%
GTGGACCTAGACGTTTATCA+TGG + chr1.2:77235094-77235113 None:intergenic 45.0%
GTGGTACCATAACAGGTGTT+GGG - chr1.2:77234771-77234790 MS.gene006455:CDS 45.0%
GTTCTGACAGATCCTGCAAA+GGG - chr1.2:77234483-77234502 MS.gene006455:intron 45.0%
GTTGAAAGTCCTGTACTGTC+CGG - chr1.2:77234973-77234992 MS.gene006455:CDS 45.0%
TAACTAACCAGGCTTTCCTC+CGG + chr1.2:77234995-77235014 None:intergenic 45.0%
TATTATGCAGCTGTTTGGGG+TGG - chr1.2:77234945-77234964 MS.gene006455:CDS 45.0%
TCCTGCAAAGGGAATGAAAG+GGG - chr1.2:77234494-77234513 MS.gene006455:intron 45.0%
TGAAAACCCTGCCAATCCAA+AGG - chr1.2:77234578-77234597 MS.gene006455:intron 45.0%
TGAGCCAACAAGTGGCAATA+CGG - chr1.2:77234347-77234366 MS.gene006455:CDS 45.0%
TTTCCATATCTCTGGACCAG+TGG + chr1.2:77234705-77234724 None:intergenic 45.0%
! AAGATTCAAGGGATTGGTGC+TGG - chr1.2:77235116-77235135 MS.gene006455:CDS 45.0%
! AGATATGGAAAGGCACAGGA+GGG - chr1.2:77234714-77234733 MS.gene006455:CDS 45.0%
! TGCTGTTTGAATCGGTGAGA+CGG - chr1.2:77236012-77236031 MS.gene006455:intron 45.0%
!! CAGGTTGTTTTCCCTAGCTT+TGG - chr1.2:77235969-77235988 MS.gene006455:intron 45.0%
!! GTTAGTGGTATAGGTACTGG+TGG - chr1.2:77234752-77234771 MS.gene006455:CDS 45.0%
!! TGCCACTTGTTGGCTCAATA+AGG + chr1.2:77234344-77234363 None:intergenic 45.0%
!!! ATTGGTGCTGGTTTTGTTCC+TGG - chr1.2:77235128-77235147 MS.gene006455:CDS 45.0%
!!! TGGTTTTGTTCCTGGGGTAT+TGG - chr1.2:77235136-77235155 MS.gene006455:CDS 45.0%
!!! TTGGTGCTGGTTTTGTTCCT+GGG - chr1.2:77235129-77235148 MS.gene006455:CDS 45.0%
!!! TTTTCCCTAGCTTTGGTGAG+AGG - chr1.2:77235976-77235995 MS.gene006455:intron 45.0%
!!! TATTTTTATCAAAAAATTTA+TGG + chr1.2:77235869-77235888 None:intergenic 5.0%
ACAAGTGGCAATACGGGCAT+CGG - chr1.2:77234354-77234373 MS.gene006455:CDS 50.0%
AGACTAACGTCCAATACCCC+AGG + chr1.2:77235149-77235168 None:intergenic 50.0%
AGGTACCTCTCACCAAAGCT+AGG + chr1.2:77235984-77236003 None:intergenic 50.0%
CCTGTGCCTTTCCATATCTC+TGG + chr1.2:77234713-77234732 None:intergenic 50.0%
GAGAAGGGACTAATTACGCC+TGG - chr1.2:77233893-77233912 MS.gene006455:CDS 50.0%
GAGCCAACAAGTGGCAATAC+GGG - chr1.2:77234348-77234367 MS.gene006455:CDS 50.0%
GATTGCTGATGCAGAGGAGA+AGG - chr1.2:77233877-77233896 MS.gene006455:intron 50.0%
GCTGTTTGAATCGGTGAGAC+GGG - chr1.2:77236013-77236032 MS.gene006455:intron 50.0%
GGTACCTCTCACCAAAGCTA+GGG + chr1.2:77235983-77236002 None:intergenic 50.0%
GGTGGTACCATAACAGGTGT+TGG - chr1.2:77234770-77234789 MS.gene006455:CDS 50.0%
TAACAAGTACCAACCTGGCC+AGG + chr1.2:77233914-77233933 None:intergenic 50.0%
! ATGCCCGTATTGCCACTTGT+TGG + chr1.2:77234354-77234373 None:intergenic 50.0%
! CCAGAGATATGGAAAGGCAC+AGG - chr1.2:77234710-77234729 MS.gene006455:CDS 50.0%
! GAGATATGGAAAGGCACAGG+AGG - chr1.2:77234713-77234732 MS.gene006455:CDS 50.0%
! GGTTCTGACAGATCCTGCAA+AGG - chr1.2:77234482-77234501 MS.gene006455:intron 50.0%
!! GGTACTGGTGGTACCATAAC+AGG - chr1.2:77234764-77234783 MS.gene006455:CDS 50.0%
!!! TGGTGCTGGTTTTGTTCCTG+GGG - chr1.2:77235130-77235149 MS.gene006455:CDS 50.0%
CTAATTACGCCTGGCCAGGT+TGG - chr1.2:77233902-77233921 MS.gene006455:CDS 55.0%
GAAAGTCCTGTACTGTCCGG+AGG - chr1.2:77234976-77234995 MS.gene006455:CDS 55.0%
GCCCCTTTCATTCCCTTTGC+AGG + chr1.2:77234498-77234517 None:intergenic 55.0%
GTTTGAATCGGTGAGACGGG+AGG - chr1.2:77236016-77236035 MS.gene006455:intron 55.0%
! TGCTCGAGTTGCTGCCAAAC+TGG - chr1.2:77233676-77233695 MS.gene006455:intron 55.0%
!! TGGCAATACGGGCATCGGAT+TGG - chr1.2:77234359-77234378 MS.gene006455:CDS 55.0%
GCCTTCTTGGCAGCAGCCAA+AGG - chr1.2:77234381-77234400 MS.gene006455:CDS 60.0%
GCCTTTGGCTGCTGCCAAGA+AGG + chr1.2:77234385-77234404 None:intergenic 60.0%
GGCTTTCCTCCGGACAGTAC+AGG + chr1.2:77234985-77235004 None:intergenic 60.0%
GGGACTAATTACGCCTGGCC+AGG - chr1.2:77233898-77233917 MS.gene006455:CDS 60.0%
GTACTGTCCGGAGGAAAGCC+TGG - chr1.2:77234985-77235004 MS.gene006455:CDS 60.0%
!! GGGCATCGGATTGGCCTTCT+TGG - chr1.2:77234368-77234387 MS.gene006455:CDS 60.0%
AGCTGCTGCAGCAGCTCCAG+AGG + chr1.2:77235783-77235802 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 77233468 77236064 77233468 ID=MS.gene006455
chr1.2 mRNA 77233468 77236064 77233468 ID=MS.gene006455.t1;Parent=MS.gene006455
chr1.2 exon 77236023 77236064 77236023 ID=MS.gene006455.t1.exon1;Parent=MS.gene006455.t1
chr1.2 CDS 77236023 77236064 77236023 ID=cds.MS.gene006455.t1;Parent=MS.gene006455.t1
chr1.2 exon 77235800 77235909 77235800 ID=MS.gene006455.t1.exon2;Parent=MS.gene006455.t1
chr1.2 CDS 77235800 77235909 77235800 ID=cds.MS.gene006455.t1;Parent=MS.gene006455.t1
chr1.2 exon 77235613 77235670 77235613 ID=MS.gene006455.t1.exon3;Parent=MS.gene006455.t1
chr1.2 CDS 77235613 77235670 77235613 ID=cds.MS.gene006455.t1;Parent=MS.gene006455.t1
chr1.2 exon 77234933 77235196 77234933 ID=MS.gene006455.t1.exon4;Parent=MS.gene006455.t1
chr1.2 CDS 77234933 77235196 77234933 ID=cds.MS.gene006455.t1;Parent=MS.gene006455.t1
chr1.2 exon 77234706 77234843 77234706 ID=MS.gene006455.t1.exon5;Parent=MS.gene006455.t1
chr1.2 CDS 77234706 77234843 77234706 ID=cds.MS.gene006455.t1;Parent=MS.gene006455.t1
chr1.2 exon 77234526 77234577 77234526 ID=MS.gene006455.t1.exon6;Parent=MS.gene006455.t1
chr1.2 CDS 77234526 77234577 77234526 ID=cds.MS.gene006455.t1;Parent=MS.gene006455.t1
chr1.2 exon 77234345 77234424 77234345 ID=MS.gene006455.t1.exon7;Parent=MS.gene006455.t1
chr1.2 CDS 77234345 77234424 77234345 ID=cds.MS.gene006455.t1;Parent=MS.gene006455.t1
chr1.2 exon 77233878 77233937 77233878 ID=MS.gene006455.t1.exon8;Parent=MS.gene006455.t1
chr1.2 CDS 77233878 77233937 77233878 ID=cds.MS.gene006455.t1;Parent=MS.gene006455.t1
chr1.2 exon 77233682 77233762 77233682 ID=MS.gene006455.t1.exon9;Parent=MS.gene006455.t1
chr1.2 CDS 77233682 77233762 77233682 ID=cds.MS.gene006455.t1;Parent=MS.gene006455.t1
chr1.2 exon 77233468 77233560 77233468 ID=MS.gene006455.t1.exon10;Parent=MS.gene006455.t1
chr1.2 CDS 77233468 77233560 77233468 ID=cds.MS.gene006455.t1;Parent=MS.gene006455.t1
Gene Sequence

>MS.gene006455

ATGGCAGTTGAAAGGTCTGGAATTGCCAAAGATGTTACAGAAGTGAGTTTGTGTATTTTGATGACATTTTGTGTGATATTTTAATGTGTTTCCTTTCTAATTAAATGTTTCTTACTGTGGATTACATCCTAATGTCTGTTGTTTATTTTGTATAGTTGATCGGAAAAACCCCATTAGTATATCTGAATAAAATCACGGATGGTTCTGTTGCTCGAGTTGCTGCCAAACTGGAATTAATGGAACCATGCTCTAGTGTAAAAGACAGGTAATCATTTAGGTTTCTTACAATAGTGCTCATATATTATTTGAGTTTTGGTTCTTGCTTTTGCGAGCAACATTCTTTTGAATTGGCTTGTGACTTTTTTCGCCTTTGCAATTTATGTTATAAATGTAGGATTGGCTATAGTATGATTGCTGATGCAGAGGAGAAGGGACTAATTACGCCTGGCCAGGTTGGTACTTGTTAAAGATTAAAATGAAAGTTCGTAGGATTGGTCATTGAAAGTGATGCTTCTAACAAATTAGCAGTTGTTTAAATTCCAGATGAACTATACATCGTTAATTTAGTTTCTGCGACAACTTTTATGTTGAATACTAGGAAATATGATAGGTGAGAGAAATACTAGTACTAATTTGGTGTTTCTTAGTTCATTATCACTGGCAGTGTTATCACAGAAAATAGTGGTTTGTTCAAATTCCGCTATGCAACAGTGTTATAGCGCCGCTATTTCACAATCTTTTGTACTAAATAGAGCATCACGGAACAATAGCACTTCGTTCAAATTCCGCTAAGCAATAGCGCTGCTATAGCTATTATTTAACCAAACTGATCACTGGTATATATGTTGTTGCATGCGGACTATTGAAGAGTGTCCTTATTGAGCCAACAAGTGGCAATACGGGCATCGGATTGGCCTTCTTGGCAGCAGCCAAAGGCTACAAGCTTATCATTACAATGCCTGCTTCAATGAGTCTTGAAAGAAGAACCATTCTTCTATCTTTTGGAGCTGAGTTGGTTCTGACAGATCCTGCAAAGGGAATGAAAGGGGCAGTTCAGAAAGCTGAAGAGATATTAGCCAAGACTCCAAATGCCTATATCCTTCAGCAATTTGAAAACCCTGCCAATCCAAAGGTATCTATCTACTCATTTGTTCTACAACTTTGGTAGTTAATGGTTGACAACTTTGGATGACACATTTGTTATCATCGTTGTATTTACAGGTGCATTATGAAACCACTGGTCCAGAGATATGGAAAGGCACAGGAGGGAAAGTTGATGCATTTGTTAGTGGTATAGGTACTGGTGGTACCATAACAGGTGTTGGGAAATATCTTAAAGAGCAAAATTCCAATATCAAGGTCATCTTTAGTTTTTCTTTTTTCCGAGACAACACTAAGTGCAAGATTTGGTTCTGATTTATAGCTGTAGTTATCCTCTCCTCTTTCCTCCTAATTTCTTGTTTTGTTTCAATTTTTATATTATGCAGCTGTTTGGGGTGGAGCCAGTTGAAAGTCCTGTACTGTCCGGAGGAAAGCCTGGTTAGTTATAAGTTATAACACTGATTTGTTTCTTACAGTTGAAATAAGAACTTACTTTTGAAGCTGTTGCTGATGTGCAAATTGCCATGATAAACGTCTAGGTCCACACAAGATTCAAGGGATTGGTGCTGGTTTTGTTCCTGGGGTATTGGACGTTAGTCTTGTCGACGAAGTAATTCAAGTAAGTTTTAATGTTTTTTGAATAATTATAATGCCCCATCACGTATTAAGTTTGATGATATAGCCTTTGATACCTAAATATATCTTAATGACTTGACTTTTAGTTTTATTTTTCTTTAAATTCTCCTTTATCTTTTACTATTGGCTTCCTAAATGGCTAAAACCCTTCCTACCAAAACCATTCTCTCAAATAATTTAACTGTTAAAGTTTCTGGAGAATGCACAAAAAGCCAATTGTGGACTTAAAATCCTGGTTTACTAAATCTTACATACTGACTAATGTACCACAATACAAACTTATCTTGTGAATGTAATTTTTAGATGGATTATGATCATGTCTTTTTGCAATTTTTTTGGACATCTGTGACAATTTATAATTTGTTAAACCTGATATGTGTGATTTGGCAGATATCAAGTGATGAAGCAATAGAAACTGCAAAGCTTCTTGCCCTTAAAGAAGGCCTATTTGTAAGCTTCGTTCGTGATTATATTCAAATTTGTTAAACAGATAAGAAATGTTTCTACTATTTTACTGTCGTACTTGGATTAATTTGTTGAGCCTCTAATATGAATATTGTTTTAGGTTGGAATATCCTCTGGAGCTGCTGCAGCAGCTGCCATTAAGATAGCAAAAAGACCAGAAAATGCTGGAAAGCTTATTGTTGTAAGTTGATTGAATCCATAAATTTTTTGATAAAAATATTTTGAATATCTGGCACAGTTGGTATGTTATAGAAAAAAAAAGGGTTTACATCATTGACAATTTTCATTTTGATATGGTGCAGGTTGTTTTCCCTAGCTTTGGTGAGAGGTACCTATCTTCTGTGCTGTTTGAATCGGTGAGACGGGAGGCTGAAAGCCTGACTTTTGAACCATGA

Protein sequence

>MS.gene006455.t1

MAVERSGIAKDVTELIGKTPLVYLNKITDGSVARVAAKLELMEPCSSVKDRIGYSMIADAEEKGLITPGQSVLIEPTSGNTGIGLAFLAAAKGYKLIITMPASMSLERRTILLSFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGVGKYLKEQNSNIKLFGVEPVESPVLSGGKPGPHKIQGIGAGFVPGVLDVSLVDEVIQISSDEAIETAKLLALKEGLFVGISSGAAAAAAIKIAKRPENAGKLIVVVFPSFGERYLSSVLFESVRREAESLTFEP