AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023918


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023918.t1 MTR_7g078070 99.211 380 2 1 1 379 1 380 0.0 773
MS.gene023918.t1 MTR_7g078070 99.681 313 1 0 67 379 8 320 0.0 644
MS.gene023918.t1 MTR_7g078070 99.652 287 1 0 93 379 1 287 0.0 590
MS.gene023918.t1 MTR_4g087490 56.583 357 143 4 21 375 16 362 9.16e-145 415
MS.gene023918.t1 MTR_1g081610 62.975 316 117 0 58 373 6 321 5.08e-137 394
MS.gene023918.t1 MTR_5g006340 62.025 316 120 0 58 373 6 321 8.59e-137 393
MS.gene023918.t1 MTR_1g081625 61.321 318 123 0 56 373 3 320 1.20e-135 390
MS.gene023918.t1 MTR_1g081620 61.465 314 121 0 60 373 7 320 2.91e-135 389
MS.gene023918.t1 MTR_1g103690 61.709 316 121 0 58 373 6 321 3.97e-134 386
MS.gene023918.t1 MTR_4g087510 56.782 317 128 2 59 375 46 353 1.21e-132 384
MS.gene023918.t1 MTR_4g087520 63.433 268 98 0 108 375 1 268 6.43e-117 340
MS.gene023918.t1 MTR_7g087110 50.578 346 157 3 28 373 37 368 2.81e-115 340
MS.gene023918.t1 MTR_1g081640 58.363 281 117 0 55 335 2 282 8.62e-112 329
MS.gene023918.t1 MTR_5g095670 29.226 349 188 6 68 359 52 398 4.15e-38 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023918.t1 AT3G61440 80.398 352 65 1 28 379 21 368 0.0 575
MS.gene023918.t1 AT3G61440 79.392 296 57 1 28 323 21 312 1.14e-169 477
MS.gene023918.t1 AT3G61440 84.559 272 42 0 108 379 1 272 2.13e-166 466
MS.gene023918.t1 AT3G61440 85.020 247 37 0 133 379 1 247 4.38e-151 426
MS.gene023918.t1 AT3G59760 60.870 322 126 0 57 378 110 431 9.02e-140 405
MS.gene023918.t1 AT3G59760 61.129 319 124 0 57 375 110 428 9.51e-140 405
MS.gene023918.t1 AT4G14880 61.076 316 123 0 58 373 3 318 9.24e-137 393
MS.gene023918.t1 AT4G14880 61.076 316 123 0 58 373 3 318 9.24e-137 393
MS.gene023918.t1 AT4G14880 61.076 316 123 0 58 373 3 318 9.24e-137 393
MS.gene023918.t1 AT4G14880 61.076 316 123 0 58 373 3 318 9.24e-137 393
MS.gene023918.t1 AT4G14880 61.076 316 123 0 58 373 3 318 9.24e-137 393
MS.gene023918.t1 AT2G43750 59.561 319 129 0 57 375 72 390 4.79e-136 394
MS.gene023918.t1 AT2G43750 59.561 319 129 0 57 375 72 390 4.79e-136 394
MS.gene023918.t1 AT3G59760 60.690 290 114 0 57 346 110 399 1.18e-123 363
MS.gene023918.t1 AT3G04940 56.646 316 137 0 58 373 6 321 5.71e-123 358
MS.gene023918.t1 AT3G04940 56.646 316 137 0 58 373 6 321 5.71e-123 358
MS.gene023918.t1 AT5G28020 56.369 314 137 0 60 373 7 320 3.24e-116 341
MS.gene023918.t1 AT5G28020 56.369 314 137 0 60 373 7 320 3.24e-116 341
MS.gene023918.t1 AT5G28020 56.369 314 137 0 60 373 7 320 3.24e-116 341
MS.gene023918.t1 AT5G28020 56.369 314 137 0 60 373 7 320 3.24e-116 341
MS.gene023918.t1 AT5G28020 56.369 314 137 0 60 373 7 320 3.24e-116 341
MS.gene023918.t1 AT3G22460 60.150 266 86 1 108 373 1 246 2.98e-112 328
MS.gene023918.t1 AT5G28030 55.414 314 140 0 60 373 7 320 5.14e-112 330
MS.gene023918.t1 AT5G28030 55.414 314 140 0 60 373 7 320 5.14e-112 330
MS.gene023918.t1 AT5G28030 55.414 314 140 0 60 373 7 320 5.14e-112 330
MS.gene023918.t1 AT5G28030 55.414 314 140 0 60 373 7 320 5.14e-112 330
MS.gene023918.t1 AT3G03630 54.114 316 135 1 59 374 98 403 1.67e-110 329
MS.gene023918.t1 AT5G28030 53.968 252 116 0 60 311 7 258 1.07e-86 263
MS.gene023918.t1 AT3G22460 62.088 182 69 0 59 240 7 188 2.49e-81 247
MS.gene023918.t1 AT5G28020 54.701 234 106 0 140 373 1 234 2.09e-78 241
MS.gene023918.t1 AT1G55880 28.906 384 209 9 41 365 21 399 2.06e-38 142
MS.gene023918.t1 AT1G55880 29.259 270 149 4 41 269 21 289 1.10e-31 123

Find 103 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAATCAGTTTGGCATTTA+TGG 0.111575 7.1:-25758081 MS.gene023918:CDS
GAGAAAATCACCTTAACATT+AGG 0.229682 7.1:+25757416 None:intergenic
GGTAGCGGAGGCACGGTTTC+CGG 0.231220 7.1:-25757467 MS.gene023918:CDS
TTTCAATCATATTAGATATA+TGG 0.257432 7.1:-25757322 MS.gene023918:intron
CACTGTTCCTCCCATTCCTT+TGG 0.269450 7.1:+25757950 None:intergenic
GTAGCGGAGGCACGGTTTCC+GGG 0.287571 7.1:-25757466 MS.gene023918:CDS
CAGACTGTTCATCCAAGTTT+CGG 0.294327 7.1:-25756528 MS.gene023918:CDS
AGAAAATCACCTTAACATTA+GGG 0.297633 7.1:+25757417 None:intergenic
AACCTTACCTTAGTATTGGC+TGG 0.308983 7.1:+25757864 None:intergenic
AAACAACAGGTCCTGAGATA+TGG 0.318320 7.1:-25757532 MS.gene023918:CDS
CAGCTTCTGTCCGAAGGTCT+TGG 0.322978 7.1:+25756478 None:intergenic
AGGGTTTGTATGAGAGCATT+TGG 0.332544 7.1:-25757999 MS.gene023918:CDS
TCGATTCAACTAACCTTTCC+AGG 0.333739 7.1:+25758216 None:intergenic
AGACTGTTCATCCAAGTTTC+GGG 0.334413 7.1:-25756527 MS.gene023918:CDS
AGACATTAATCGACCGAAAC+TGG 0.354464 7.1:+25756444 None:intergenic
GACATATTTGTGATGGGAAT+AGG 0.357383 7.1:-25757488 MS.gene023918:CDS
ACAGGTCCTCATCAAATAAC+TGG 0.359927 7.1:-25757161 MS.gene023918:intron
GTTCCTCCCATTCCTTTGGT+TGG 0.365478 7.1:+25757954 None:intergenic
AATGGGAGGAACAGTGAAAA+AGG 0.372245 7.1:-25757943 MS.gene023918:CDS
TGGATTCAAACCAGACATAT+TGG 0.377923 7.1:-25757129 MS.gene023918:CDS
TACCATGAGTCCTTCTTTCA+AGG 0.380319 7.1:+25756942 None:intergenic
TGTTGCAGCATAAAAGCATT+TGG 0.385420 7.1:+25757897 None:intergenic
AACCATCTTATATCCCTTCA+TGG 0.389444 7.1:+25758055 None:intergenic
TGAAAACATGCAGCCAGTTT+CGG 0.397413 7.1:-25756457 MS.gene023918:CDS
CTTTCCAAGCTTGTGTAAGA+TGG 0.401441 7.1:+25758023 None:intergenic
CCTCATCAAATAACTGGAAA+TGG 0.407277 7.1:-25757155 MS.gene023918:CDS
GGCATTTATGGCTGCCATGA+AGG 0.421016 7.1:-25758069 MS.gene023918:CDS
ATCACAAAACCCTAATGTTA+AGG 0.422500 7.1:-25757426 MS.gene023918:intron
CTTACACAAGCTTGGAAAGA+AGG 0.427704 7.1:-25758019 MS.gene023918:CDS
GGAGGCACGGTTTCCGGGGT+TGG 0.433673 7.1:-25757461 MS.gene023918:CDS
ATCAACCTCCTCATCATCAT+TGG 0.433901 7.1:+25759372 None:intergenic
TGTTAACCTTACCTTAGTAT+TGG 0.438994 7.1:+25757860 None:intergenic
CAGACCGGCACTTGCTATGA+TGG 0.446594 7.1:-25758268 MS.gene023918:CDS
CATATTGGACATGGATGTAA+TGG 0.448326 7.1:-25757114 MS.gene023918:CDS
AGGCAACATGGGAATCAGTT+TGG 0.448530 7.1:-25758090 MS.gene023918:CDS
ACATCCATGTCCAATATGTC+TGG 0.450862 7.1:+25757119 None:intergenic
TACCTTAGTATTGGCTGGGT+TGG 0.454890 7.1:+25757869 None:intergenic
CTGTCTTGTTCCAAGACCTT+CGG 0.456322 7.1:-25756488 MS.gene023918:CDS
TTCTAGGTTGGTATATCGTC+CGG 0.458734 7.1:-25756785 MS.gene023918:intron
CAAATAACTGGAAATGGTGT+TGG 0.466995 7.1:-25757149 MS.gene023918:CDS
ACCTTACCTTAGTATTGGCT+GGG 0.467817 7.1:+25757865 None:intergenic
TTCCAACCCAGCCAATACTA+AGG 0.471629 7.1:-25757871 MS.gene023918:intron
ATTCCCATGTTGCCTGATGT+TGG 0.472301 7.1:+25758098 None:intergenic
CACAGTTGCAGCACTCAGAT+TGG 0.473290 7.1:-25756756 MS.gene023918:CDS
TTGGTACCAGGAAGATCTTT+AGG 0.474343 7.1:+25759291 None:intergenic
AACAACAGGTCCTGAGATAT+GGG 0.481398 7.1:-25757531 MS.gene023918:CDS
AAACAAAGGCAAACTTATAG+TGG 0.482939 7.1:-25756720 MS.gene023918:intron
GATTTGCCTAAAGATCTTCC+TGG 0.483439 7.1:-25759297 MS.gene023918:CDS
CACTGATCCAACCAAAGGAA+TGG 0.496426 7.1:-25757961 MS.gene023918:CDS
AGGTATCGTTCCCCGAAACT+TGG 0.499828 7.1:+25756516 None:intergenic
TGCTGCAACTGTGTTTGCTC+CGG 0.501786 7.1:+25756766 None:intergenic
TTTGTATCCTCCCATATCTC+AGG 0.504891 7.1:+25757521 None:intergenic
TCCTCATCATCATTGGATGC+TGG 0.506377 7.1:+25759379 None:intergenic
GCATTTATGGCTGCCATGAA+GGG 0.510121 7.1:-25758068 MS.gene023918:CDS
GGTTAACATGGCTAGGACAT+TGG 0.515821 7.1:-25756965 MS.gene023918:CDS
ACTGATCCAACCAAAGGAAT+GGG 0.516662 7.1:-25757960 MS.gene023918:CDS
CAGTGAAGATGCGGTTAACA+TGG 0.519950 7.1:-25756977 MS.gene023918:CDS
TATGCCATCTTACACAAGCT+TGG 0.524193 7.1:-25758027 MS.gene023918:CDS
TTACACAAGCTTGGAAAGAA+GGG 0.524356 7.1:-25758018 MS.gene023918:CDS
GAGATATGGGAGGATACAAA+TGG 0.524396 7.1:-25757518 MS.gene023918:CDS
CATTTGGTGTGGATTCCAAA+AGG 0.529158 7.1:+25757913 None:intergenic
ATTCTGATAGAGCCAACATC+AGG 0.532002 7.1:-25758110 MS.gene023918:CDS
AGGACATTGGCCTTGAAAGA+AGG 0.544017 7.1:-25756952 MS.gene023918:CDS
GTGCTGAATGGTGGTAAACC+TGG 0.548416 7.1:-25757277 MS.gene023918:intron
TAGCGGAGGCACGGTTTCCG+GGG 0.556029 7.1:-25757465 MS.gene023918:CDS
TATCTTAACAAAGTAACTGA+AGG 0.556227 7.1:-25758713 MS.gene023918:CDS
TGCCATGAAGGGATATAAGA+TGG 0.557496 7.1:-25758057 MS.gene023918:CDS
TTCAGCACATTACTTTCAGA+TGG 0.557589 7.1:+25757292 None:intergenic
CAGGTGCATTTCGAAACAAC+AGG 0.558100 7.1:-25757545 MS.gene023918:CDS
AGAGCCAACATCAGGCAACA+TGG 0.563901 7.1:-25758102 MS.gene023918:CDS
CTACTGCTAGCATCAAAGAC+AGG 0.569459 7.1:-25758649 MS.gene023918:intron
GAATTTGATAACTCCTGGAA+AGG 0.576005 7.1:-25758229 MS.gene023918:intron
CAGCATAAAAGCATTTGGTG+TGG 0.576924 7.1:+25757902 None:intergenic
GGCCTTGAAAGAAGGACTCA+TGG 0.577659 7.1:-25756944 MS.gene023918:intron
ACAAGTTGACATATTTGTGA+TGG 0.584399 7.1:-25757495 MS.gene023918:CDS
CCATTTCCAGTTATTTGATG+AGG 0.589789 7.1:+25757155 None:intergenic
CAAGTTGACATATTTGTGAT+GGG 0.592268 7.1:-25757494 MS.gene023918:CDS
GGGAATAGGTAGCGGAGGCA+CGG 0.600122 7.1:-25757474 MS.gene023918:CDS
GCTAATCTTCCTGAAAACAA+AGG 0.600165 7.1:-25756734 MS.gene023918:CDS
AACAAAGTAACTGAAGGATG+TGG 0.601957 7.1:-25758707 MS.gene023918:CDS
TCTTCCATCATAGCAAGTGC+CGG 0.604090 7.1:+25758264 None:intergenic
GCCAGCATCCAATGATGATG+AGG 0.606622 7.1:-25759380 MS.gene023918:CDS
CAAACCAGACATATTGGACA+TGG 0.607682 7.1:-25757123 MS.gene023918:CDS
CTGTCTTTGATGCTAGCAGT+AGG 0.608366 7.1:+25758650 None:intergenic
ATGAAGAAGAGGTTCTCTTG+AGG 0.609055 7.1:+25759424 None:intergenic
ATCATATTAGATATATGGAG+TGG 0.610130 7.1:-25757317 MS.gene023918:intron
GAGCCAACATCAGGCAACAT+GGG 0.610601 7.1:-25758101 MS.gene023918:CDS
TCTGAAAGTAATGTGCTGAA+TGG 0.619543 7.1:-25757289 MS.gene023918:CDS
TTTGTGATGGGAATAGGTAG+CGG 0.619890 7.1:-25757482 MS.gene023918:CDS
AAAAGATGAAGAATCAACAC+TGG 0.622283 7.1:+25759335 None:intergenic
AAGATGCGGTTAACATGGCT+AGG 0.624967 7.1:-25756972 MS.gene023918:CDS
ATTCTCACTGATCCAACCAA+AGG 0.629727 7.1:-25757966 MS.gene023918:CDS
GTAGGTTAGCAGTGAAGATG+CGG 0.633557 7.1:-25756986 MS.gene023918:intron
TAATGATGATGATGAAGAAG+AGG 0.636238 7.1:+25759413 None:intergenic
TTTAAGATATTGTCCAACCC+CGG 0.638530 7.1:+25757448 None:intergenic
CTTGGAACAAGACAGATGAC+AGG 0.646085 7.1:+25756496 None:intergenic
GACTGTTCATCCAAGTTTCG+GGG 0.652256 7.1:-25756526 MS.gene023918:CDS
AGCATCCAATGATGATGAGG+AGG 0.662832 7.1:-25759377 MS.gene023918:CDS
GATCCAACCAAAGGAATGGG+AGG 0.667757 7.1:-25757957 MS.gene023918:CDS
GAAAGTAATGTGCTGAATGG+TGG 0.674745 7.1:-25757286 MS.gene023918:CDS
GTGATGGGAATAGGTAGCGG+AGG 0.681582 7.1:-25757479 MS.gene023918:CDS
ACTTTGTTAAGATAAACAAG+TGG 0.682462 7.1:+25758722 None:intergenic
AACAGGTCCTGAGATATGGG+AGG 0.695778 7.1:-25757528 MS.gene023918:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAATTCTTGAATTT+TGG + chr7.1:25756814-25756833 None:intergenic 10.0%
!!! AAAAAAAATTCTTGAATTTT+GGG + chr7.1:25756813-25756832 None:intergenic 10.0%
!! TATGATTGAAAAAATTTCAA+AGG + chr7.1:25758562-25758581 None:intergenic 15.0%
!! TTACTTGTAATTCAATATTA+AGG + chr7.1:25759052-25759071 None:intergenic 15.0%
!! TTTCAATCATATTAGATATA+TGG - chr7.1:25758571-25758590 MS.gene023918:intron 15.0%
!!! TATTTTCTTTGAATTTTTCT+AGG - chr7.1:25759092-25759111 MS.gene023918:intron 15.0%
!! AATCATTAGATGTATACAAA+AGG - chr7.1:25756912-25756931 MS.gene023918:intron 20.0%
!! AGATTATGATAAAATGAAAG+AGG + chr7.1:25759247-25759266 None:intergenic 20.0%
!! ATACATAACTTACGTTAAAA+TGG - chr7.1:25758320-25758339 MS.gene023918:intron 20.0%
!! CATTGAATAAGAGAAAAAAT+TGG + chr7.1:25757105-25757124 None:intergenic 20.0%
!! GTAATATGAATTGTAATCTT+AGG + chr7.1:25758502-25758521 None:intergenic 20.0%
!! TACATAACTTACGTTAAAAT+GGG - chr7.1:25758321-25758340 MS.gene023918:intron 20.0%
!!! AAAAGGAATTTGAAATATAG+AGG + chr7.1:25757281-25757300 None:intergenic 20.0%
!!! AAAGGAATTTGAAATATAGA+GGG + chr7.1:25757280-25757299 None:intergenic 20.0%
!!! CAATTTATTTTTCAGCTTAT+TGG - chr7.1:25757141-25757160 MS.gene023918:CDS 20.0%
! AAATTCGGTCAAATTTAAAG+CGG + chr7.1:25757311-25757330 None:intergenic 25.0%
! AATAATCGATGCAATTTGAA+AGG - chr7.1:25757505-25757524 MS.gene023918:CDS 25.0%
! AATGTTTGTTCTTCAAACTT+TGG + chr7.1:25757012-25757031 None:intergenic 25.0%
! ACTTTGTTAAGATAAACAAG+TGG + chr7.1:25757174-25757193 None:intergenic 25.0%
! AGAAAATCACCTTAACATTA+GGG + chr7.1:25758479-25758498 None:intergenic 25.0%
! ATAGTACTTTGTTCCTTAAT+TGG - chr7.1:25756684-25756703 MS.gene023918:intron 25.0%
! ATATACATGTACTTACTTCT+AGG + chr7.1:25758812-25758831 None:intergenic 25.0%
! ATCATATTAGATATATGGAG+TGG - chr7.1:25758576-25758595 MS.gene023918:intron 25.0%
! ATTCATGTGATTTACTTGAT+TGG + chr7.1:25757336-25757355 None:intergenic 25.0%
! CAATATTAAGGTGAAATTCA+TGG + chr7.1:25759040-25759059 None:intergenic 25.0%
! TACAAGAAAAAATCTCAAGA+AGG - chr7.1:25757540-25757559 MS.gene023918:CDS 25.0%
! TACTATTTATGTTCGAAACA+GGG - chr7.1:25758069-25758088 MS.gene023918:CDS 25.0%
! TATCTTAACAAAGTAACTGA+AGG - chr7.1:25757180-25757199 MS.gene023918:intron 25.0%
! TTCATGTTTGTGTTAATTGA+TGG - chr7.1:25757752-25757771 MS.gene023918:intron 25.0%
!! AAAAAGAATTTGATAACTCC+TGG - chr7.1:25757659-25757678 MS.gene023918:intron 25.0%
!! AAGGAATTTGAAATATAGAG+GGG + chr7.1:25757279-25757298 None:intergenic 25.0%
!! AGTTGGATAGAGAAATATTT+TGG + chr7.1:25756784-25756803 None:intergenic 25.0%
!! TTCTTTGAATTTTTCTAGGT+TGG - chr7.1:25759096-25759115 MS.gene023918:intron 25.0%
!! TTTACTTGATTGGTCAAATT+CGG + chr7.1:25757326-25757345 None:intergenic 25.0%
!!! TCAGTTCACTTTTTATCAAA+AGG - chr7.1:25756984-25757003 MS.gene023918:CDS 25.0%
!!! TGAAACATGTTTTTTGATGT+TGG + chr7.1:25756624-25756643 None:intergenic 25.0%
!!! TTATTTTTCAGCTTATTGGT+AGG - chr7.1:25757145-25757164 MS.gene023918:CDS 25.0%
AAAAGATGAAGAATCAACAC+TGG + chr7.1:25756561-25756580 None:intergenic 30.0%
AAACAAAGGCAAACTTATAG+TGG - chr7.1:25759173-25759192 MS.gene023918:intron 30.0%
ATCACAAAACCCTAATGTTA+AGG - chr7.1:25758467-25758486 MS.gene023918:intron 30.0%
ATGTAAACAACGAGCAAAAT+TGG + chr7.1:25757717-25757736 None:intergenic 30.0%
CATCAAAAAACATGTTTCAC+AGG - chr7.1:25756625-25756644 MS.gene023918:intron 30.0%
GAGAAAATCACCTTAACATT+AGG + chr7.1:25758480-25758499 None:intergenic 30.0%
GGATCGTAAAAAATAGTAGT+TGG + chr7.1:25758222-25758241 None:intergenic 30.0%
GTACTATTTATGTTCGAAAC+AGG - chr7.1:25758068-25758087 MS.gene023918:CDS 30.0%
TGTTAACCTTACCTTAGTAT+TGG + chr7.1:25758036-25758055 None:intergenic 30.0%
TTACGTTAAAATGGGAAAAC+AGG - chr7.1:25758329-25758348 MS.gene023918:intron 30.0%
TTGTTAGATAGTAGCTATGA+CGG - chr7.1:25758092-25758111 MS.gene023918:CDS 30.0%
! ACAAGTTGACATATTTGTGA+TGG - chr7.1:25758398-25758417 MS.gene023918:intron 30.0%
! AGGAATTTGAAATATAGAGG+GGG + chr7.1:25757278-25757297 None:intergenic 30.0%
! CAAGTTGACATATTTGTGAT+GGG - chr7.1:25758399-25758418 MS.gene023918:intron 30.0%
! TAATGATGATGATGAAGAAG+AGG + chr7.1:25756483-25756502 None:intergenic 30.0%
! TTAGGCATCAAACTTCTTTT+TGG - chr7.1:25759306-25759325 MS.gene023918:CDS 30.0%
! TTTAAAGCGGTATCTACAAA+AGG + chr7.1:25757298-25757317 None:intergenic 30.0%
!! TGAATTTTGGGTAATGAAGT+TGG + chr7.1:25756801-25756820 None:intergenic 30.0%
!!! ATAAGTTTGCCTTTGTTTTC+AGG + chr7.1:25759171-25759190 None:intergenic 30.0%
AACAAAGTAACTGAAGGATG+TGG - chr7.1:25757186-25757205 MS.gene023918:intron 35.0%
AACCATCTTATATCCCTTCA+TGG + chr7.1:25757841-25757860 None:intergenic 35.0%
ATCGATGCAATTTGAAAGGT+CGG - chr7.1:25757509-25757528 MS.gene023918:CDS 35.0%
ATTTGATGAGGACCTGTATA+TGG + chr7.1:25758729-25758748 None:intergenic 35.0%
CAAATAACTGGAAATGGTGT+TGG - chr7.1:25758744-25758763 MS.gene023918:intron 35.0%
CAAGTCTCTTACTGCAAAAT+CGG - chr7.1:25758696-25758715 MS.gene023918:CDS 35.0%
CAGCAGAACATCAACAAAAT+TGG + chr7.1:25756873-25756892 None:intergenic 35.0%
CATATTGGACATGGATGTAA+TGG - chr7.1:25758779-25758798 MS.gene023918:intron 35.0%
CCATTTCCAGTTATTTGATG+AGG + chr7.1:25758741-25758760 None:intergenic 35.0%
CCTCATCAAATAACTGGAAA+TGG - chr7.1:25758738-25758757 MS.gene023918:CDS 35.0%
GAAACAAAATGATGCTTACC+AGG + chr7.1:25758637-25758656 None:intergenic 35.0%
GACATAAGTTTGTGACAGTT+AGG + chr7.1:25758884-25758903 None:intergenic 35.0%
GCTAATCTTCCTGAAAACAA+AGG - chr7.1:25759159-25759178 MS.gene023918:intron 35.0%
TAAACAACGAGCAAAATTGG+TGG + chr7.1:25757714-25757733 None:intergenic 35.0%
TCACAAACTTATGTCGTTGT+AGG - chr7.1:25758889-25758908 MS.gene023918:intron 35.0%
TCTGAAAGTAATGTGCTGAA+TGG - chr7.1:25758604-25758623 MS.gene023918:intron 35.0%
TGACAGTTAGGATAAACACA+AGG + chr7.1:25758872-25758891 None:intergenic 35.0%
TGGATTCAAACCAGACATAT+TGG - chr7.1:25758764-25758783 MS.gene023918:intron 35.0%
TTACACAAGCTTGGAAAGAA+GGG - chr7.1:25757875-25757894 MS.gene023918:CDS 35.0%
TTCAGCACATTACTTTCAGA+TGG + chr7.1:25758604-25758623 None:intergenic 35.0%
TTTCTTGAATTTCGACAGAC+CGG - chr7.1:25757610-25757629 MS.gene023918:intron 35.0%
! AAACCAGTGTTTGTTAACCA+CGG + chr7.1:25758243-25758262 None:intergenic 35.0%
! ATGCTGTAACTGTTTTGCAT+TGG - chr7.1:25756715-25756734 MS.gene023918:intron 35.0%
! ATGCTTAGCAGTGTGATTTT+AGG - chr7.1:25759288-25759307 MS.gene023918:CDS 35.0%
! GAAAAAGGCTTATGACCTTT+TGG - chr7.1:25757965-25757984 MS.gene023918:CDS 35.0%
! GAATTTGATAACTCCTGGAA+AGG - chr7.1:25757664-25757683 MS.gene023918:intron 35.0%
! GACATATTTGTGATGGGAAT+AGG - chr7.1:25758405-25758424 MS.gene023918:intron 35.0%
! TTTAAGATATTGTCCAACCC+CGG + chr7.1:25758448-25758467 None:intergenic 35.0%
! TTTGAAATATAGAGGGGGTA+AGG + chr7.1:25757273-25757292 None:intergenic 35.0%
!! TCAAGAAGGTCGTGTTTTTA+GGG - chr7.1:25757554-25757573 MS.gene023918:intron 35.0%
!! TGTTGCAGCATAAAAGCATT+TGG + chr7.1:25757999-25758018 None:intergenic 35.0%
!!! AAATATTTTGGCCATACACG+TGG + chr7.1:25756772-25756791 None:intergenic 35.0%
!!! CTACTATTTTTTACGATCCG+TGG - chr7.1:25758223-25758242 MS.gene023918:intron 35.0%
!!! TGTTTTTTGATGTTGGTACC+AGG + chr7.1:25756617-25756636 None:intergenic 35.0%
AAACAACAGGTCCTGAGATA+TGG - chr7.1:25758361-25758380 MS.gene023918:intron 40.0%
AACAACAGGTCCTGAGATAT+GGG - chr7.1:25758362-25758381 MS.gene023918:intron 40.0%
AATGGGAGGAACAGTGAAAA+AGG - chr7.1:25757950-25757969 MS.gene023918:CDS 40.0%
ACAGGTCCTCATCAAATAAC+TGG - chr7.1:25758732-25758751 MS.gene023918:CDS 40.0%
ACATCCATGTCCAATATGTC+TGG + chr7.1:25758777-25758796 None:intergenic 40.0%
ACTGATCCAACCAAAGGAAT+GGG - chr7.1:25757933-25757952 MS.gene023918:CDS 40.0%
AGACTGTTCATCCAAGTTTC+GGG - chr7.1:25759366-25759385 MS.gene023918:CDS 40.0%
AGCATCACAGTCACCAATTA+AGG + chr7.1:25756700-25756719 None:intergenic 40.0%
ATCAACCTCCTCATCATCAT+TGG + chr7.1:25756524-25756543 None:intergenic 40.0%
ATCGGATGTTGTCCATATAC+AGG - chr7.1:25758714-25758733 MS.gene023918:CDS 40.0%
ATGAAGAAGAGGTTCTCTTG+AGG + chr7.1:25756472-25756491 None:intergenic 40.0%
ATTCTCACTGATCCAACCAA+AGG - chr7.1:25757927-25757946 MS.gene023918:CDS 40.0%
ATTCTGATAGAGCCAACATC+AGG - chr7.1:25757783-25757802 MS.gene023918:intron 40.0%
CAAACCAGACATATTGGACA+TGG - chr7.1:25758770-25758789 MS.gene023918:intron 40.0%
CAGACTGTTCATCCAAGTTT+CGG - chr7.1:25759365-25759384 MS.gene023918:CDS 40.0%
CCATCAAATAGTGACTAGAG+CGG - chr7.1:25758164-25758183 MS.gene023918:intron 40.0%
CTTACACAAGCTTGGAAAGA+AGG - chr7.1:25757874-25757893 MS.gene023918:CDS 40.0%
CTTTCCAAGCTTGTGTAAGA+TGG + chr7.1:25757873-25757892 None:intergenic 40.0%
GAAAGTAATGTGCTGAATGG+TGG - chr7.1:25758607-25758626 MS.gene023918:intron 40.0%
GAGATATGGGAGGATACAAA+TGG - chr7.1:25758375-25758394 MS.gene023918:intron 40.0%
GATTTGCCTAAAGATCTTCC+TGG - chr7.1:25756596-25756615 MS.gene023918:intron 40.0%
GGGAATCAGTTTGGCATTTA+TGG - chr7.1:25757812-25757831 MS.gene023918:intron 40.0%
TACCATGAGTCCTTCTTTCA+AGG + chr7.1:25758954-25758973 None:intergenic 40.0%
TATGCCATCTTACACAAGCT+TGG - chr7.1:25757866-25757885 MS.gene023918:intron 40.0%
TCGATTCAACTAACCTTTCC+AGG + chr7.1:25757680-25757699 None:intergenic 40.0%
TGAAAACATGCAGCCAGTTT+CGG - chr7.1:25759436-25759455 MS.gene023918:CDS 40.0%
TGCCATGAAGGGATATAAGA+TGG - chr7.1:25757836-25757855 MS.gene023918:intron 40.0%
TTGGTACCAGGAAGATCTTT+AGG + chr7.1:25756605-25756624 None:intergenic 40.0%
TTTGTATCCTCCCATATCTC+AGG + chr7.1:25758375-25758394 None:intergenic 40.0%
! CTCAAGAAGGTCGTGTTTTT+AGG - chr7.1:25757553-25757572 MS.gene023918:intron 40.0%
! TTTGTGATGGGAATAGGTAG+CGG - chr7.1:25758411-25758430 MS.gene023918:intron 40.0%
!! AACCTTACCTTAGTATTGGC+TGG + chr7.1:25758032-25758051 None:intergenic 40.0%
!! ACCTTACCTTAGTATTGGCT+GGG + chr7.1:25758031-25758050 None:intergenic 40.0%
!! AGGGTTTGTATGAGAGCATT+TGG - chr7.1:25757894-25757913 MS.gene023918:CDS 40.0%
!! CAGCATAAAAGCATTTGGTG+TGG + chr7.1:25757994-25758013 None:intergenic 40.0%
!! CATTTGGTGTGGATTCCAAA+AGG + chr7.1:25757983-25758002 None:intergenic 40.0%
!! TTCTAGGTTGGTATATCGTC+CGG - chr7.1:25759108-25759127 MS.gene023918:intron 40.0%
AAGATGCGGTTAACATGGCT+AGG - chr7.1:25758921-25758940 MS.gene023918:intron 45.0%
ACCCAGCCAATACTAAGGTA+AGG - chr7.1:25758027-25758046 MS.gene023918:CDS 45.0%
AGGCAACATGGGAATCAGTT+TGG - chr7.1:25757803-25757822 MS.gene023918:intron 45.0%
ATTCCCATGTTGCCTGATGT+TGG + chr7.1:25757798-25757817 None:intergenic 45.0%
CACTGATCCAACCAAAGGAA+TGG - chr7.1:25757932-25757951 MS.gene023918:CDS 45.0%
CAGGTGCATTTCGAAACAAC+AGG - chr7.1:25758348-25758367 MS.gene023918:intron 45.0%
CAGTGAAGATGCGGTTAACA+TGG - chr7.1:25758916-25758935 MS.gene023918:intron 45.0%
CCGCTCTAGTCACTATTTGA+TGG + chr7.1:25758167-25758186 None:intergenic 45.0%
CTACTGCTAGCATCAAAGAC+AGG - chr7.1:25757244-25757263 MS.gene023918:intron 45.0%
CTCATATCATGCCACGTGTA+TGG - chr7.1:25756758-25756777 MS.gene023918:CDS 45.0%
CTGTCTTTGATGCTAGCAGT+AGG + chr7.1:25757246-25757265 None:intergenic 45.0%
CTTGGAACAAGACAGATGAC+AGG + chr7.1:25759400-25759419 None:intergenic 45.0%
GACTGTTCATCCAAGTTTCG+GGG - chr7.1:25759367-25759386 MS.gene023918:CDS 45.0%
GATCCGTGGTTAACAAACAC+TGG - chr7.1:25758237-25758256 MS.gene023918:CDS 45.0%
GCATTTATGGCTGCCATGAA+GGG - chr7.1:25757825-25757844 MS.gene023918:intron 45.0%
GGTTAACATGGCTAGGACAT+TGG - chr7.1:25758928-25758947 MS.gene023918:intron 45.0%
GTAGGTTAGCAGTGAAGATG+CGG - chr7.1:25758907-25758926 MS.gene023918:intron 45.0%
TCCTCATCATCATTGGATGC+TGG + chr7.1:25756517-25756536 None:intergenic 45.0%
TCTTCCATCATAGCAAGTGC+CGG + chr7.1:25757632-25757651 None:intergenic 45.0%
TTCCAACCCAGCCAATACTA+AGG - chr7.1:25758022-25758041 MS.gene023918:CDS 45.0%
! AACGAGCAAAATTGGTGGCA+TGG + chr7.1:25757709-25757728 None:intergenic 45.0%
! AGCATCCAATGATGATGAGG+AGG - chr7.1:25756516-25756535 MS.gene023918:CDS 45.0%
! CTGTCTTGTTCCAAGACCTT+CGG - chr7.1:25759405-25759424 MS.gene023918:CDS 45.0%
! TGTTTTCAGCTTCTGTCCGA+AGG + chr7.1:25759424-25759443 None:intergenic 45.0%
!! AGGACATTGGCCTTGAAAGA+AGG - chr7.1:25758941-25758960 MS.gene023918:intron 45.0%
!! TACCTTAGTATTGGCTGGGT+TGG + chr7.1:25758027-25758046 None:intergenic 45.0%
!!! TTTTTTAAACAATTTTTTAT+TGG - chr7.1:25757069-25757088 MS.gene023918:intron 5.0%
AACAGGTCCTGAGATATGGG+AGG - chr7.1:25758365-25758384 MS.gene023918:intron 50.0%
AGAGCCAACATCAGGCAACA+TGG - chr7.1:25757791-25757810 MS.gene023918:intron 50.0%
CACAGTTGCAGCACTCAGAT+TGG - chr7.1:25759137-25759156 MS.gene023918:intron 50.0%
CACTGTTCCTCCCATTCCTT+TGG + chr7.1:25757946-25757965 None:intergenic 50.0%
GAGCCAACATCAGGCAACAT+GGG - chr7.1:25757792-25757811 MS.gene023918:intron 50.0%
GATCCAACCAAAGGAATGGG+AGG - chr7.1:25757936-25757955 MS.gene023918:CDS 50.0%
GGCATTTATGGCTGCCATGA+AGG - chr7.1:25757824-25757843 MS.gene023918:intron 50.0%
GGCCTTGAAAGAAGGACTCA+TGG - chr7.1:25758949-25758968 MS.gene023918:intron 50.0%
GTGCTGAATGGTGGTAAACC+TGG - chr7.1:25758616-25758635 MS.gene023918:intron 50.0%
GTTCCTCCCATTCCTTTGGT+TGG + chr7.1:25757942-25757961 None:intergenic 50.0%
TGCTGCAACTGTGTTTGCTC+CGG + chr7.1:25759130-25759149 None:intergenic 50.0%
! AGGTATCGTTCCCCGAAACT+TGG + chr7.1:25759380-25759399 None:intergenic 50.0%
! GCCAGCATCCAATGATGATG+AGG - chr7.1:25756513-25756532 MS.gene023918:CDS 50.0%
CAGCTTCTGTCCGAAGGTCT+TGG + chr7.1:25759418-25759437 None:intergenic 55.0%
! GTGATGGGAATAGGTAGCGG+AGG - chr7.1:25758414-25758433 MS.gene023918:intron 55.0%
!! CAGACCGGCACTTGCTATGA+TGG - chr7.1:25757625-25757644 MS.gene023918:intron 55.0%
!! GGGAATAGGTAGCGGAGGCA+CGG - chr7.1:25758419-25758438 MS.gene023918:intron 60.0%
! GTAGCGGAGGCACGGTTTCC+GGG - chr7.1:25758427-25758446 MS.gene023918:intron 65.0%
! TAGCGGAGGCACGGTTTCCG+GGG - chr7.1:25758428-25758447 MS.gene023918:intron 65.0%
!! GGTAGCGGAGGCACGGTTTC+CGG - chr7.1:25758426-25758445 MS.gene023918:intron 65.0%
! GGAGGCACGGTTTCCGGGGT+TGG - chr7.1:25758432-25758451 MS.gene023918:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 25756449 25759466 25756449 ID=MS.gene023918
chr7.1 mRNA 25756449 25759466 25756449 ID=MS.gene023918.t1;Parent=MS.gene023918
chr7.1 exon 25759269 25759466 25759269 ID=MS.gene023918.t1.exon1;Parent=MS.gene023918.t1
chr7.1 CDS 25759269 25759466 25759269 ID=cds.MS.gene023918.t1;Parent=MS.gene023918.t1
chr7.1 exon 25758650 25758759 25758650 ID=MS.gene023918.t1.exon2;Parent=MS.gene023918.t1
chr7.1 CDS 25758650 25758759 25758650 ID=cds.MS.gene023918.t1;Parent=MS.gene023918.t1
chr7.1 exon 25758230 25758287 25758230 ID=MS.gene023918.t1.exon3;Parent=MS.gene023918.t1
chr7.1 CDS 25758230 25758287 25758230 ID=cds.MS.gene023918.t1;Parent=MS.gene023918.t1
chr7.1 exon 25757872 25758135 25757872 ID=MS.gene023918.t1.exon4;Parent=MS.gene023918.t1
chr7.1 CDS 25757872 25758135 25757872 ID=cds.MS.gene023918.t1;Parent=MS.gene023918.t1
chr7.1 exon 25757427 25757564 25757427 ID=MS.gene023918.t1.exon5;Parent=MS.gene023918.t1
chr7.1 CDS 25757427 25757564 25757427 ID=cds.MS.gene023918.t1;Parent=MS.gene023918.t1
chr7.1 exon 25757278 25757329 25757278 ID=MS.gene023918.t1.exon6;Parent=MS.gene023918.t1
chr7.1 CDS 25757278 25757329 25757278 ID=cds.MS.gene023918.t1;Parent=MS.gene023918.t1
chr7.1 exon 25757100 25757179 25757100 ID=MS.gene023918.t1.exon7;Parent=MS.gene023918.t1
chr7.1 CDS 25757100 25757179 25757100 ID=cds.MS.gene023918.t1;Parent=MS.gene023918.t1
chr7.1 exon 25756945 25757004 25756945 ID=MS.gene023918.t1.exon8;Parent=MS.gene023918.t1
chr7.1 CDS 25756945 25757004 25756945 ID=cds.MS.gene023918.t1;Parent=MS.gene023918.t1
chr7.1 exon 25756721 25756801 25756721 ID=MS.gene023918.t1.exon9;Parent=MS.gene023918.t1
chr7.1 CDS 25756721 25756801 25756721 ID=cds.MS.gene023918.t1;Parent=MS.gene023918.t1
chr7.1 exon 25756449 25756547 25756449 ID=MS.gene023918.t1.exon10;Parent=MS.gene023918.t1
chr7.1 CDS 25756449 25756547 25756449 ID=cds.MS.gene023918.t1;Parent=MS.gene023918.t1
Gene Sequence

>MS.gene023918

ATGGCTTCTCTAATGAGCTTCCTCAAGAGAACCTCTTCTTCATCATCATCATTAGCAGTTGCATGCCAGCATCCAATGATGATGAGGAGGTTGATGACAACAACAGCAACCAGTGTTGATTCTTCATCTTTTGCTCAGAGAATCAGAGATTTGCCTAAAGATCTTCCTGGTACCAACATCAAAAAACATGTTTCACAGGTACATAAACATGTTTTTTCATTACAAAGACAGCAACATAGTACTTTGTTCCTTAATTGGTGACTGTGATGCTGTAACTGTTTTGCATTGGCTTTCTGTTTCTAGTGTTCACTCATATCATGCCACGTGTATGGCCAAAATATTTCTCTATCCAACTTCATTACCCAAAATTCAAGAATTTTTTTTTGTACAGATACTAGTAGATCTTGAAGTTATTTTGTATCCAATTTTGTTGATGTTCTGCTGCATGTGATGTTAATAGAAGAATCATTAGATGTATACAAAAGGAAATGTTAAAAGAGAACTTAATTTTTCAGCTTTCACTTAACTTTTTCTGTCAGTTCACTTTTTATCAAAAGGAACCAAAGTTTGAAGAACAAACATTTTATGAAATAAATAATAATCAATGTTTCTATTTTTGTTTTTTTAAACAATTTTTTATTGGAGTATAATTTCCAATTTTTTCTCTTATTCAATGCAAATCTGAATTAGAACAATTTATTTTTCAGCTTATTGGTAGGACTCCACTTGTTTATCTTAACAAAGTAACTGAAGGATGTGGTGCTTATATTGCTGTTAAGCAAGAGATGATGCAGCCTACTGCTAGCATCAAAGACAGGTTACCTTACCCCCTCTATATTTCAAATTCCTTTTGTAGATACCGCTTTAAATTTGACCGAATTTGACCAATCAAGTAAATCACATGAATTAATAAAGTTGTTTTAGTTGTGATAAATTTGCTGATAATTGATATTGTTTTACAAGTTTACTCTTCGTGAGCGATAATTAGTTTAAGTTTTCATCATAGTATTTATTGTGTAAAAATATGTAACATAATTATGTGTATGTTAGTAAAGAAATAATCGATGCAATTTGAAAGGTCGGAAAAAATATACAAGAAAAAATCTCAAGAAGGTCGTGTTTTTAGGGACGAGTACAAGTTTGTAACATAACTTTTGTGAATTTCTTGAATTTCGACAGACCGGCACTTGCTATGATGGAAGATGCTGAGAAAAAGAATTTGATAACTCCTGGAAAGGTTAGTTGAATCGAATCATGCCATGCCACCAATTTTGCTCGTTGTTTACATATAGATTGATGCTGATTCATGTTTGTGTTAATTGATGGTGTAGACAATTCTGATAGAGCCAACATCAGGCAACATGGGAATCAGTTTGGCATTTATGGCTGCCATGAAGGGATATAAGATGGTTTTGACTATGCCATCTTACACAAGCTTGGAAAGAAGGGTTTGTATGAGAGCATTTGGAGCTGAATTGATTCTCACTGATCCAACCAAAGGAATGGGAGGAACAGTGAAAAAGGCTTATGACCTTTTGGAATCCACACCAAATGCTTTTATGCTGCAACAATTTTCCAACCCAGCCAATACTAAGGTAAGGTTAACATAACTTGAATTAGTACTATTTATGTTCGAAACAGGGTTGTTAGATAGTAGCTATGACGGTTCTATGACGCTATCTTTTGTTCTTCGATACGATATTCAGTACAAAATTCCATCAAATAGTGACTAGAGCGGTGCTATAGTTCTATTGCGTATCAGAATTTGAACCAACTACTATTTTTTACGATCCGTGGTTAACAAACACTGGTTTGAAATCTTTGACTAAGAAAAAAATCTATGAAACTATGCTTATGCTATACTTGTGTTTATACATAACTTACGTTAAAATGGGAAAACAGGTGCATTTCGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTGATGGGAATAGGTAGCGGAGGCACGGTTTCCGGGGTTGGACAATATCTTAAATCACAAAACCCTAATGTTAAGGTGATTTTCTCCTAAGATTACAATTCATATTACTAACTAAAAAGTGTTCTGTTAGATAGTTTCATTGAATCCTTTGAAATTTTTTCAATCATATTAGATATATGGAGTGGAGCCATCTGAAAGTAATGTGCTGAATGGTGGTAAACCTGGTAAGCATCATTTTGTTTCTTTGATACTCTTTCACTTTTTTATGTGATAAAATTTGTACAAGTCTCTTACTGCAAAATCGGATGTTGTCCATATACAGGTCCTCATCAAATAACTGGAAATGGTGTTGGATTCAAACCAGACATATTGGACATGGATGTAATGGAAAAAGTCCTAGAAGTAAGTACATGTATATGTATTACGTTTTGCGACATAGAGATTCAGCTTGAAAGCCTTGTGTTTATCCTAACTGTCACAAACTTATGTCGTTGTAGGTTAGCAGTGAAGATGCGGTTAACATGGCTAGGACATTGGCCTTGAAAGAAGGACTCATGGTAATCTTCAAATGACAATTTTGTACACTTTTTGAAACACGAAATGCATGAGAAACTTCAATTTGACCATGAATTTCACCTTAATATTGAATTACAAGTAAAAGTTTGATATTTTAACTATTATTTTCTTTGAATTTTTCTAGGTTGGTATATCGTCCGGAGCAAACACAGTTGCAGCACTCAGATTGGCTAATCTTCCTGAAAACAAAGGCAAACTTATAGTGGTAAGAACAATTTTGCTTAAAATTTATAACAACATGAAGCTAAATGAATCCTCTTTCATTTTATCATAATCTAATTTGAGATACTGTAAAAATATGCTTAGCAGTGTGATTTTAGGCATCAAACTTCTTTTTGGTGCTAATGTTGTCAAAATTGCTGCTGACTTAAATTTCAGACTGTTCATCCAAGTTTCGGGGAACGATACCTGTCATCTGTCTTGTTCCAAGACCTTCGGACAGAAGCTGAAAACATGCAGCCAGTTTCGGTCGATTAA

Protein sequence

>MS.gene023918.t1

MASLMSFLKRTSSSSSSLAVACQHPMMMRRLMTTTATSVDSSSFAQRIRDLPKDLPGTNIKKHVSQLIGRTPLVYLNKVTEGCGAYIAVKQEMMQPTASIKDRPALAMMEDAEKKNLITPGKTILIEPTSGNMGISLAFMAAMKGYKMVLTMPSYTSLERRVCMRAFGAELILTDPTKGMGGTVKKAYDLLESTPNAFMLQQFSNPANTKVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPSESNVLNGGKPGPHQITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARTLALKEGLMVGISSGANTVAALRLANLPENKGKLIVTVHPSFGERYLSSVLFQDLRTEAENMQPVSVD