AlfalfaGEDB | MS.gene39577

M. sativa cultivar XinJiangDaYe / MS.gene39577

KEGG: K01738
GO: GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
PFAM: PF00291.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39577.t1	XP_024638054.1	98.4	383	6	0	1	383	1	383	2.60E-202	714.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39577.t1	O81155	81.4	345	61	2	41	382	41	385	2.6e-158	559.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39577.t1	A0A396I9J9	98.4	383	6	0	1	383	1	383	1.9e-202	714.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene39577	0.819332	1.23E-52	-1.69E-46
MS.gene049171	MS.gene39577	0.818582	1.82E-52	-1.69E-46
MS.gene049217	MS.gene39577	0.853913	1.74E-61	-1.69E-46
MS.gene049222	MS.gene39577	0.877005	8.89E-69	-1.69E-46
MS.gene049232	MS.gene39577	0.831335	1.77E-55	-1.69E-46
MS.gene049285	MS.gene39577	0.85278	3.69E-61	-1.69E-46
MS.gene049320	MS.gene39577	0.83902	2.03E-57	-1.69E-46
MS.gene049609	MS.gene39577	0.828644	8.02E-55	-1.69E-46
MS.gene049627	MS.gene39577	0.867776	1.07E-65	-1.69E-46
MS.gene049633	MS.gene39577	0.80168	8.03E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000153	MS.gene39577	PPI
MS.gene005160	MS.gene39577	PPI
MS.gene006455	MS.gene39577	PPI
MS.gene008717	MS.gene39577	PPI
MS.gene02466	MS.gene39577	PPI
MS.gene024871	MS.gene39577	PPI
MS.gene067063	MS.gene39577	PPI
MS.gene21844	MS.gene39577	PPI
MS.gene26579	MS.gene39577	PPI
MS.gene26887	MS.gene39577	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39577.t1	MTR_4g087490	82.507	343	57	1	41	383	25	364	0.0	582
MS.gene39577.t1	MTR_4g087520	100.000	270	0	0	114	383	1	270	0.0	546
MS.gene39577.t1	MTR_4g087510	70.496	383	85	4	1	383	1	355	0.0	543
MS.gene39577.t1	MTR_5g006340	73.684	323	85	0	61	383	3	325	1.69e-161	456
MS.gene39577.t1	MTR_1g103690	73.684	323	85	0	61	383	3	325	8.17e-161	454
MS.gene39577.t1	MTR_1g081610	73.885	314	82	0	66	379	8	321	1.09e-155	441
MS.gene39577.t1	MTR_1g081620	66.879	314	104	0	66	379	7	320	3.98e-145	414
MS.gene39577.t1	MTR_7g087110	66.358	324	96	2	59	379	55	368	2.43e-143	412
MS.gene39577.t1	MTR_1g081625	67.197	314	103	0	66	379	7	320	4.77e-142	407
MS.gene39577.t1	MTR_7g078070	61.059	321	125	0	61	381	56	376	1.50e-141	407

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39577.t1	AT2G43750	82.196	337	60	0	46	382	55	391	0.0	541
MS.gene39577.t1	AT2G43750	82.196	337	60	0	46	382	55	391	0.0	541
MS.gene39577.t1	AT3G59760	81.791	335	59	1	48	382	97	429	0.0	540
MS.gene39577.t1	AT3G59760	81.791	335	59	1	48	382	97	429	0.0	540
MS.gene39577.t1	AT3G59760	81.433	307	55	1	48	354	97	401	5.65e-173	489
MS.gene39577.t1	AT4G14880	70.347	317	94	0	66	382	5	321	3.62e-154	437
MS.gene39577.t1	AT4G14880	70.347	317	94	0	66	382	5	321	3.62e-154	437
MS.gene39577.t1	AT4G14880	70.347	317	94	0	66	382	5	321	3.62e-154	437
MS.gene39577.t1	AT4G14880	70.347	317	94	0	66	382	5	321	3.62e-154	437
MS.gene39577.t1	AT4G14880	70.347	317	94	0	66	382	5	321	3.62e-154	437

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Find 95 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCAATGAGTTGATTA+AGG	0.295418	4.2:-23906385	None:intergenic
AAAATGAGGGAAAGCTTATT+GGG	0.318994	4.2:+23911479	MS.gene39577:CDS
AAAATTCAGGGTATTGGGGC+TGG	0.504330	4.2:+23909952	MS.gene39577:CDS
AAACAGGTGGGAATTTCTTC+AGG	0.360612	4.2:+23911415	MS.gene39577:intron
AAATATCTTTCACCAAAGCT+TGG	0.442789	4.2:-23911720	None:intergenic
AAATGAGGGAAAGCTTATTG+GGG	0.682298	4.2:+23911480	MS.gene39577:CDS
AACCCTTTGCGATGCTATTC+AGG	0.263806	4.2:-23906695	None:intergenic
AACTCGTCTTTCCAAACTCA+TGG	0.475233	4.2:-23908665	None:intergenic
AAGAAAGGAGCCATAACACC+TGG	0.541723	4.2:+23907138	MS.gene39577:CDS
AAGCAAATAGCACTTCAGGA+AGG	0.667188	4.2:+23910799	MS.gene39577:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACAAATTACCTTCCC+AGG	-	chr4.2:23907159-23907178	None:intergenic	30.0%
AAAATGAGGGAAAGCTTATT+GGG	+	chr4.2:23911479-23911498	MS.gene39577:CDS	30.0%
AAATATCTTTCACCAAAGCT+TGG	-	chr4.2:23911723-23911742	None:intergenic	30.0%
AAATTGTATGGAATGTTTGG+TGG	-	chr4.2:23911224-23911243	None:intergenic	30.0%
AACTGAAATCTATGTCTTCA+TGG	-	chr4.2:23910215-23910234	None:intergenic	30.0%
AAGTCAGTTTAACTGATACA+AGG	+	chr4.2:23910686-23910705	MS.gene39577:intron	30.0%
AATATCTTTCACCAAAGCTT+GGG	-	chr4.2:23911722-23911741	None:intergenic	30.0%
AATGAAGATTTCACCTATGT+TGG	+	chr4.2:23911357-23911376	MS.gene39577:intron	30.0%
ACAAATATGATAGGGATTTG+GGG	-	chr4.2:23911273-23911292	None:intergenic	30.0%
ACATAGGTGAAATCTTCATT+TGG	-	chr4.2:23911357-23911376	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	23906372	23911803	23906372	ID=MS.gene39577
chr4.2	mRNA	23906372	23911803	23906372	ID=MS.gene39577.t1;Parent=MS.gene39577
chr4.2	exon	23906372	23906587	23906372	ID=MS.gene39577.t1.exon1;Parent=MS.gene39577.t1
chr4.2	CDS	23906372	23906587	23906372	ID=cds.MS.gene39577.t1;Parent=MS.gene39577.t1
chr4.2	exon	23906669	23906778	23906669	ID=MS.gene39577.t1.exon2;Parent=MS.gene39577.t1
chr4.2	CDS	23906669	23906778	23906669	ID=cds.MS.gene39577.t1;Parent=MS.gene39577.t1
chr4.2	exon	23907107	23907164	23907107	ID=MS.gene39577.t1.exon3;Parent=MS.gene39577.t1
chr4.2	CDS	23907107	23907164	23907107	ID=cds.MS.gene39577.t1;Parent=MS.gene39577.t1
chr4.2	exon	23908568	23908831	23908568	ID=MS.gene39577.t1.exon4;Parent=MS.gene39577.t1
chr4.2	CDS	23908568	23908831	23908568	ID=cds.MS.gene39577.t1;Parent=MS.gene39577.t1
chr4.2	exon	23909454	23909591	23909454	ID=MS.gene39577.t1.exon5;Parent=MS.gene39577.t1
chr4.2	CDS	23909454	23909591	23909454	ID=cds.MS.gene39577.t1;Parent=MS.gene39577.t1
chr4.2	exon	23909796	23909847	23909796	ID=MS.gene39577.t1.exon6;Parent=MS.gene39577.t1
chr4.2	CDS	23909796	23909847	23909796	ID=cds.MS.gene39577.t1;Parent=MS.gene39577.t1
chr4.2	exon	23909944	23910023	23909944	ID=MS.gene39577.t1.exon7;Parent=MS.gene39577.t1
chr4.2	CDS	23909944	23910023	23909944	ID=cds.MS.gene39577.t1;Parent=MS.gene39577.t1
chr4.2	exon	23910769	23910828	23910769	ID=MS.gene39577.t1.exon8;Parent=MS.gene39577.t1
chr4.2	CDS	23910769	23910828	23910769	ID=cds.MS.gene39577.t1;Parent=MS.gene39577.t1
chr4.2	exon	23911421	23911501	23911421	ID=MS.gene39577.t1.exon9;Parent=MS.gene39577.t1
chr4.2	CDS	23911421	23911501	23911421	ID=cds.MS.gene39577.t1;Parent=MS.gene39577.t1
chr4.2	exon	23911711	23911803	23911711	ID=MS.gene39577.t1.exon10;Parent=MS.gene39577.t1
chr4.2	CDS	23911711	23911803	23911711	ID=cds.MS.gene39577.t1;Parent=MS.gene39577.t1

Gene Sequence

>MS.gene39577

ATGGCTTCTACTTCCTTAATCAACTCATTGACTTTTACTTCCCGCACCCCCACTCTTCACTACTTAACCAGCCGCACCTCCACCTCATCACTCCCATTCGCTATCTCCCCCCGTTCCATCTCCACCAGAATCTCTTCCCCCGTTCTATGCAAGGCCGTCTCCGTCAATTCCCAAACCACCATTGAAGGTCTCAACATTGCCGAAGATGTTACTCAGGTTCGTTTCATTTGTTTTTTTGTTTGTGCGTGAGAATTAAGCATTCAATTCAATGATGAATCTCCATTTTTTTTGCTGCAGCTCATAGGAAAAACACCAATGGTTTACCTGAATAGCATCGCAAAGGGTTCCGTTGCTAATATTGCTGCTAAGCTTGAGATTATGGAGCCTTGTTGTAGTGTCAAAGACAGGTGAAAAATTCTTTGTTTTTCTTTTTCCTTTCAATCTGGTTATTCTACGTTTATTGTTAGATTGTTTGGGAGCGCATATGGAAACAACTTAGGATATGTCCGTAAACTGTTTTTAGTTTATTTCCTTATGCTTTTCACGATAGCTTATGAAAAAAACACTGTATATGAATAACAATTTGACTTTATTTATAAGAACTTATATGATGAGCGCCAAGTCAAGCTGTTTATCCAAACAGGGTTTTGGTATATGTCCACATAAGTTTGTATATAAGAGGTTCAATATATTTCTAATTTATTTTTTTATTGCTTTTGATTTGTTCTCTTGCAGGATAGGTTATAGTATGATACTTGATGCTGAGAAGAAAGGAGCCATAACACCTGGGAAGGTAATTTGTTTTTTATTGCTTCTGGTTTCAATTGTTGCATGAACTTGTTCATTTTAAATTTTTAATGTCCTTTGGTAGATATTAGATAGTGTAAAAGTAGTAGCTGTACTTAACACAGTTTCTGTATATGGTGTATTACATATCTGTACTCTTGTCCTGTGCTGCACGCCTACACCTTCATATTATAGGTTCCCAGTTTTCGACTAATCCCCGTGTGAATTGTTAATTACTTTGTGCATATTCAAACAAAAACGAGTTATCTATCTACAATCATTTTTTCTTGTTACGGCAAAGTTCTCTTAAACAAGGACAAATTCATAAATTTACATGCTTTTTGTCTAGAGATTCTGTTCACTGCACTGGAGTATGCTATGTTTTTACTTTTTATAGTAAAACTGTTTATACAAAACAATAACCAAGCCTTTTCCCACTAGGTGGGGATGGTGCTAACTGCATATAAGGAATTTTAGCGTTGCAGGAGTTTATATGACCTAATCCGAGTTTAAGCGGGGTGTGTGACTATTATAGGGAAGAAAAAGTGGGACGTGTGAATATTGGCAATAAATTGCTGTATTATCACCTGGCATGTTATCTACTGATAGTTGATACTTATAGAAACTACAACTTACTTTAGGCATTTTGGTATACCACACTCCGATAGAGTGATAGGACACTTGGGCCTGATGCCCATGATGAGCCAATCATCGGGGCAAATCCACTTAGTTCCACCATCTGGAAGGTCTAGACTAGGAAAAAGAGGGTGGGGTCAGGAGGATAGAATGTGTTAGTTGGTGAGGTCAGGAGGATTTTTACAACCACATTGGGCCTGACAACCATGATGAGCCAATCATTGGGGCAAACCACATAGGTCCACCATTTGGAAGGTCTAGACTAGGAGAAAGAGGGTGGGTCAGGAGGATAGAATGTGTCAGTTGGTGAGGTGTGCACTGATTCCATGTGATTCAATTATAAGAGAGAAGGAATGGGCAGTGGAATTCATTCATGATTAATTCTTAAGTGAGTTTGTTAGGAGAGAATATCTCTCTTGTACTGGTAGGAGTCTCCGACTCTGGATTTGTGATCCCATAGCTGTAGAGCCTCTGAACTCACCTTTCCCATATAAATAATACACAGATTTTATCACTGAATTTTGTGATTCTATCACACTCTTTGCTTTAGGATGTAATTAAACAATTGATTTCCTTTTCTTTTATGCTGCACCTGCATCTATGTGTGCGCATTATATGGTTCTTTTGGAAAAGAACAATGTAGACTTAATGGGAGCTAGTTACATTGTGATGTGATTTCTTTTCTTGCAGATTAATTGTGGATAAATAAATTTAATGTTGCTTCAATCCCTTTTTTATCATTCTTAGTTAACTTGTTTCTGGTATACACTTCAGAGTGTTTTGGTGGAACCTACTAGTGGGAACACAGGAATTGGTCTTGCCTTTATAGCAGCTTCTAAAGGTTATAAACTCATTTTAACAATGCCTGCTTCCATGAGTTTGGAAAGACGAGTTCTTTTGAAAGCATTTGGAGCTGAGCTTGTTTTGACTGAGGCTGCGAAGGGTATGAATGGAGCAGTTCAAAAAGCTGAAGAAATTGTAAAAAGTACACCTGATGCATACATGCTTCAACAATTTGACAATCCTTCAAATCCCAAGGTAAACGGCAACATCTAAGTCTATCTTGACTTGAGTACACAAATCCCATGTACTCCCTCCGGTCACATTTATAAGCAAAAAATGACTTTTTAGGTACATTGAATAATTAATGTATCCGGTCACATTTATGGGTTAGATACATTAATTATTGAATGTACCTAAAAAGTTGTTTTTTGCTTATATATGTGACCGGAGGGAGTAATTGAAAAAATCAGCATTGATTATTTATTCTTCTTTTATTTGAGTTAAAACCCATGCTTCAAACAGAGGTCACAAAGTCTAGGTTAGGCAAACAGATTTTCTCTTAAAGATTCATGCACATCAGTCCTGCTAAAGGCACCATATAGAAGCATATCAGCCTAGTGCCACCCCCATTTGGTCCTCCATTTTCTGACTGAAGCCCCCAAACATAAAACAACAACAAAATGCTTATAGCTCTAGTTTCCCCAAACATACCAAGTCACTAGTTTATTTTTCATTTGTGTGGGGAATTTTAGTTCCTTAGGCATTTAGTTTATTTGTTTATCCCCTTTGCATTCAGTTGAGTTCAAGATGATGGACATGTCACTGATAGAGTTCTACTTCTAACGTGGTGAACTGCAAATTTGGTTCATATGGGCAGATACATTTTGAGACAACTGGGCCAGAGATATGGGAAGATACAAGAGGCAAAATAGATATTTTAGTTGCAGGGATTGGAACTGGTGGAACCATTTCTGGAACCGGTCGATTCCTAAAACAACAAAATTCAAAAGTACAGGTAAATCATTCTCAATGGCATCGTAGAACCATGGGTGTCTTTTAATATCAATTACGATGAGGTAATATCTGCTAAATACTTGGTGTAAATGGATCTTTGTACTCCATATACTGGTCATGTCTTATCTCTTGAAGTATAATTTAATTTCTAGGGAAGCTTTCTACCTTGTCGGTTTCCATTAAAAATTTCTTTTTTATGTATCAGGTTATTGGTGTAGAGCCTCTCGAAAGCAACATACTTTCAGGTGGAAAGCCAGGTAAGAAATAATAAGTTTCAAATCCAAGTCCAATATCATAATTTTTATATTTTCAAAAGAGCTTTTATCTATTTCCTTTTTTCTGCTAAACCACAGGACCTCACAAAATTCAGGGTATTGGGGCTGGTTTTGTGCCCAGGAATTTGGATGAAGAAGTGCTTGATGAAGTTATAGCGGTCTGTTCTTGTGCTTTGCTGTGTTATTTTATGTTATAATTCAATGCATTATTCATATATACGAAGACATTTTCTTCTGACTGTCTCACATGCATACTGTGTGTGCTAGTTCGTTAGTCTACATACAATTTTTTTTTTCCCACTCATTAGAGAATATCTTCCGTTGACAAGAATGGACTGTGCAAAATCCATGAAGACATAGATTTCAGTTGTTGTTGCCTTTTACCTCTATAAGCATTGCCATGTCTACCCGCACATACACACTATCTTGTTCAATAGTGAACATTTGTTCATACATCGAAGTTTTCTAAATTCTGGTGTTTGCTACTCTTTTCCTAACCCAAGAGTGGTACTCCACATTTGAAGTTAGTTTCAGTAGACTATTTTTCATTAATGTGCTATAGGGACTATCTGACCAGGATAAATAGAAAATGCCAATATTTTCTTGGTCTGTACTTGTTAGAACTCAACAGAGGGAATAGAGAAAGAGAGATGTGAGAGAAAAAGCAAGTAATTGTTATTTGAGTAAGTGCATATCGGATACAGGTTTTGTATTTTTACAGTGAACAGAAACTGTTTCTGTTATCCAACTAACTCGAGTACAATAAGCACTAAAACTTACTTAACTGCACAGACAGTTAGAATGAAGTTAAGTTAAACTGAAGTCAGTTTAACTGATACAAGGATAGCTAATTGTAAACTCTAATTGTGTACTGTAATTAACTCCCCTGTCTTGATTTGGCAGATATCCAGTGATGAAGCTATTGAAACTACAAAGCAAATAGCACTTCAGGAAGGCTTGCTGGTTAGTGTTTTATGTTAATCTTTTCATCCATTTGCCTGACTTGCATTTTTTAAATGCCCATATCATGCGCACTTACACAGTTACACGACATGCTAAAACAGCTTGAAATAATCATGCACAATAACATATTAAAGCATAATGAAGGGCATAAGAACTTTTGTATCTTCATTAGCTGTTGATATTATCCAAGCACTTGGGGAACCTTCCCTTCCCTCCCTTAAAGTAGCGCGTAACAATCATATGCACAACAGCACAAGACCATATTAGAACATTATTAAGGGCATAAGAACTTTCATATCTTGGTTAGCGTTAATAAGTATCCAAGCAATGGAAAATCTTCCCTCCCTTAAAGGCTAACTATCAAGGGGGAAGAACCAAACCAGTTAAATACTCCACCAAACATTCCATACAATTTGATGCAGGACTTTGACATCCCATAATCCCCAAATCCCTATCATATTTGTTATTTTCTATTGGTTCGTATCAATCAACTAGCTTCAAATCTTATGACGACTTAATTCTGAACCAAATGAAGATTTCACCTATGTTGGCTTTATACTCTGATCCTTACCTTCATACCATTGGAAAACAGGTGGGAATTTCTTCAGGTGCTGCTGCTGCAGCTGCATTGCAGGTTGCAAAGAGGCCTGAAAATGAGGGAAAGCTTATTGGGGTATGTATAATTCCTCGTTACAAAAAAAAAAAAAAAAAATCTTATGGATGGATGGAAGTAAACTTTCATAAAATCCGCCTTATATTCTGTTATTTTCATAATAATATTAACCTTATATTTTTTACTCTTAGAATTTCATAAAATTTCAAATTTTCAGAATTAGAATACTCTATTTACATTTTAATACCCACAATTTTTATATATTGCAGGTTGTATTCCCAAGCTTTGGTGAAAGATATTTGTCCACTGTTCTTTTCCAGAAAATTCGAGAAGAATGTGAGAACATGCAACCGGAGCCATGA

Protein sequence

>MS.gene39577.t1

MASTSLINSLTFTSRTPTLHYLTSRTSTSSLPFAISPRSISTRISSPVLCKAVSVNSQTTIEGLNIAEDVTQLIGKTPMVYLNSIAKGSVANIAAKLEIMEPCCSVKDRIGYSMILDAEKKGAITPGKSVLVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTEAAKGMNGAVQKAEEIVKSTPDAYMLQQFDNPSNPKIHFETTGPEIWEDTRGKIDILVAGIGTGGTISGTGRFLKQQNSKVQVIGVEPLESNILSGGKPGPHKIQGIGAGFVPRNLDEEVLDEVIAISSDEAIETTKQIALQEGLLVGISSGAAAAAALQVAKRPENEGKLIGVVFPSFGERYLSTVLFQKIREECENMQPEP