AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52446


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52446.t1 MTR_7g078070 93.351 376 5 3 1 375 1 357 0.0 706
MS.gene52446.t1 MTR_7g078070 92.557 309 4 2 67 375 8 297 0.0 578
MS.gene52446.t1 MTR_7g078070 91.873 283 4 2 93 375 1 264 0.0 524
MS.gene52446.t1 MTR_4g087490 56.061 330 133 4 21 348 16 335 7.93e-129 375
MS.gene52446.t1 MTR_1g081610 62.543 291 109 0 58 348 6 296 2.46e-122 357
MS.gene52446.t1 MTR_1g081625 60.751 293 115 0 56 348 3 295 1.19e-121 355
MS.gene52446.t1 MTR_5g006340 61.168 291 113 0 58 348 6 296 1.65e-121 355
MS.gene52446.t1 MTR_1g081620 61.246 289 112 0 60 348 7 295 3.94e-121 354
MS.gene52446.t1 MTR_1g103690 61.168 291 113 0 58 348 6 296 2.09e-119 350
MS.gene52446.t1 MTR_4g087510 56.897 290 116 2 59 348 46 326 9.29e-118 347
MS.gene52446.t1 MTR_1g081640 58.363 281 117 0 55 335 2 282 2.29e-111 329
MS.gene52446.t1 MTR_7g087110 51.090 321 143 3 28 348 37 343 2.20e-104 313
MS.gene52446.t1 MTR_4g087520 62.241 241 91 0 108 348 1 241 1.88e-99 296
MS.gene52446.t1 MTR_5g095670 28.834 326 174 5 68 336 52 376 5.01e-36 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52446.t1 AT3G61440 80.625 320 58 1 28 347 21 336 0.0 521
MS.gene52446.t1 AT3G61440 79.392 296 57 1 28 323 21 312 3.82e-169 476
MS.gene52446.t1 AT3G61440 85.417 240 35 0 108 347 1 240 3.41e-145 413
MS.gene52446.t1 AT3G61440 86.047 215 30 0 133 347 1 215 4.33e-130 374
MS.gene52446.t1 AT3G59760 57.716 324 131 1 57 380 110 427 5.15e-130 380
MS.gene52446.t1 AT3G59760 60.616 292 115 0 57 348 110 401 5.03e-124 365
MS.gene52446.t1 AT3G59760 60.616 292 115 0 57 348 110 401 6.59e-124 365
MS.gene52446.t1 AT4G14880 60.690 290 114 0 58 347 3 292 1.39e-122 357
MS.gene52446.t1 AT4G14880 60.690 290 114 0 58 347 3 292 1.39e-122 357
MS.gene52446.t1 AT4G14880 60.690 290 114 0 58 347 3 292 1.39e-122 357
MS.gene52446.t1 AT4G14880 60.690 290 114 0 58 347 3 292 1.39e-122 357
MS.gene52446.t1 AT4G14880 60.690 290 114 0 58 347 3 292 1.39e-122 357
MS.gene52446.t1 AT2G43750 58.904 292 120 0 57 348 72 363 6.34e-120 353
MS.gene52446.t1 AT2G43750 58.904 292 120 0 57 348 72 363 6.34e-120 353
MS.gene52446.t1 AT3G04940 56.897 290 125 0 59 348 7 296 1.75e-110 327
MS.gene52446.t1 AT3G04940 56.897 290 125 0 59 348 7 296 1.75e-110 327
MS.gene52446.t1 AT5G28020 56.055 289 127 0 60 348 7 295 7.37e-104 310
MS.gene52446.t1 AT5G28020 56.055 289 127 0 60 348 7 295 7.37e-104 310
MS.gene52446.t1 AT5G28020 56.055 289 127 0 60 348 7 295 7.37e-104 310
MS.gene52446.t1 AT5G28020 56.055 289 127 0 60 348 7 295 7.37e-104 310
MS.gene52446.t1 AT5G28020 56.055 289 127 0 60 348 7 295 7.37e-104 310
MS.gene52446.t1 AT3G03630 55.862 290 118 1 59 348 98 377 4.07e-101 306
MS.gene52446.t1 AT5G28030 55.363 289 129 0 60 348 7 295 1.37e-99 299
MS.gene52446.t1 AT5G28030 55.363 289 129 0 60 348 7 295 1.37e-99 299
MS.gene52446.t1 AT5G28030 55.363 289 129 0 60 348 7 295 1.37e-99 299
MS.gene52446.t1 AT5G28030 55.363 289 129 0 60 348 7 295 1.37e-99 299
MS.gene52446.t1 AT3G22460 59.167 240 78 1 108 347 1 220 4.23e-98 293
MS.gene52446.t1 AT5G28030 53.968 252 116 0 60 311 7 258 2.37e-86 263
MS.gene52446.t1 AT3G22460 62.088 182 69 0 59 240 7 188 4.40e-81 247
MS.gene52446.t1 AT5G28020 54.067 209 96 0 140 348 1 209 2.26e-66 211
MS.gene52446.t1 AT1G55880 28.451 355 193 7 41 336 21 373 8.92e-36 135
MS.gene52446.t1 AT1G55880 29.259 270 149 4 41 269 21 289 2.86e-31 122

Find 105 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAATCAGTTTGGCATTTA+TGG 0.111575 7.2:-27762301 MS.gene52446:CDS
GAGAAAATCACCTTAACATT+AGG 0.229682 7.2:+27761636 None:intergenic
GGTAGCGGAGGCACGGTTTC+CGG 0.231220 7.2:-27761687 MS.gene52446:CDS
TTTCAATCATATTAGATATA+TGG 0.257432 7.2:-27761542 MS.gene52446:intron
CACTGTTCCTCCCATTCCTT+TGG 0.269450 7.2:+27762170 None:intergenic
GTAGCGGAGGCACGGTTTCC+GGG 0.287571 7.2:-27761686 MS.gene52446:CDS
CAGACTGTTCATCCAAGTTT+CGG 0.294327 7.2:-27760761 MS.gene52446:CDS
AGAAAATCACCTTAACATTA+GGG 0.297633 7.2:+27761637 None:intergenic
AACCTTACCTTAGTATTGGC+TGG 0.308983 7.2:+27762084 None:intergenic
AAACAACAGGTCCTGAGATA+TGG 0.318320 7.2:-27761752 MS.gene52446:CDS
CAGCTTCTGTCCGAAGGTCT+TGG 0.322978 7.2:+27760711 None:intergenic
AGGGTTTGTATGAGAGCATT+TGG 0.332544 7.2:-27762219 MS.gene52446:CDS
TCGATTCAACTAACCTTTCC+AGG 0.333739 7.2:+27762436 None:intergenic
AGACTGTTCATCCAAGTTTC+GGG 0.334413 7.2:-27760760 MS.gene52446:CDS
GACATATTTGTGATGGGAAT+AGG 0.357383 7.2:-27761708 MS.gene52446:CDS
ACAGGTCCTCATCAAATAAC+TGG 0.359927 7.2:-27761381 MS.gene52446:intron
GTTCCTCCCATTCCTTTGGT+TGG 0.365478 7.2:+27762174 None:intergenic
TTCTAGGTTGGTATATCGTC+TGG 0.366637 7.2:-27761004 MS.gene52446:intron
AATGGGAGGAACAGTGAAAA+AGG 0.372245 7.2:-27762163 MS.gene52446:CDS
TACCATGAGTCCTTCTTTCA+AGG 0.380319 7.2:+27761159 None:intergenic
TGTTGCAGCATAAAAGCATT+TGG 0.385420 7.2:+27762117 None:intergenic
ATCAGTTTGCCTTTGTTCTC+AGG 0.389149 7.2:+27760944 None:intergenic
AACCATCTTATATCCCTTCA+TGG 0.389444 7.2:+27762275 None:intergenic
CTTTCCAAGCTTGTGTAAGA+TGG 0.401441 7.2:+27762243 None:intergenic
CCTCATCAAATAACTGGAAA+TGG 0.407277 7.2:-27761375 MS.gene52446:CDS
GGCATTTATGGCTGCCATGA+AGG 0.421016 7.2:-27762289 MS.gene52446:CDS
ATCACAAAACCCTAATGTTA+AGG 0.422500 7.2:-27761646 MS.gene52446:intron
ACATCCATGTCCAGTATGTC+TGG 0.425686 7.2:+27761339 None:intergenic
CTTACACAAGCTTGGAAAGA+AGG 0.427704 7.2:-27762239 MS.gene52446:CDS
GGAGGCACGGTTTCCGGGGT+TGG 0.433673 7.2:-27761681 MS.gene52446:CDS
ATCAACCTCCTCATCATCAT+TGG 0.433901 7.2:+27763592 None:intergenic
TGTTAACCTTACCTTAGTAT+TGG 0.438994 7.2:+27762080 None:intergenic
CAGACCGGCACTTGCTATGA+TGG 0.446594 7.2:-27762488 MS.gene52446:CDS
AGGCAACATGGGAATCAGTT+TGG 0.448530 7.2:-27762310 MS.gene52446:CDS
AGACATTAATCGACCGAGAC+TGG 0.451069 7.2:+27760677 None:intergenic
TACCTTAGTATTGGCTGGGT+TGG 0.454890 7.2:+27762089 None:intergenic
CAAATAACTGGAAATGGTGT+TGG 0.466995 7.2:-27761369 MS.gene52446:CDS
TGGATTCAAACCAGACATAC+TGG 0.467063 7.2:-27761349 MS.gene52446:CDS
ACCTTACCTTAGTATTGGCT+GGG 0.467817 7.2:+27762085 None:intergenic
CCGTCTTGTTCCAAGACCTT+CGG 0.470134 7.2:-27760721 MS.gene52446:CDS
TTCCAACCCAGCCAATACTA+AGG 0.471629 7.2:-27762091 MS.gene52446:intron
ATTCCCATGTTGCCTGATGT+TGG 0.472301 7.2:+27762318 None:intergenic
CACAGTTGCAGCACTCAGAT+TGG 0.473290 7.2:-27760975 MS.gene52446:CDS
TTGGTACCAGGAAGATCTTT+AGG 0.474343 7.2:+27763511 None:intergenic
CATACTGGACATGGATGTAA+TGG 0.480916 7.2:-27761334 MS.gene52446:CDS
AACAACAGGTCCTGAGATAT+GGG 0.481398 7.2:-27761751 MS.gene52446:CDS
GATTTGCCTAAAGATCTTCC+TGG 0.483439 7.2:-27763517 MS.gene52446:CDS
CACTGATCCAACCAAAGGAA+TGG 0.496426 7.2:-27762181 MS.gene52446:CDS
AGGTATCGTTCCCCGAAACT+TGG 0.499828 7.2:+27760749 None:intergenic
TTTGTATCCTCCCATATCTC+AGG 0.504891 7.2:+27761741 None:intergenic
TCCTCATCATCATTGGATGC+TGG 0.506377 7.2:+27763599 None:intergenic
GCATTTATGGCTGCCATGAA+GGG 0.510121 7.2:-27762288 MS.gene52446:CDS
AGTTAACATGGCTAGGACAT+TGG 0.511456 7.2:-27761182 MS.gene52446:CDS
GTTTGCCTTTGTTCTCAGGT+AGG 0.513242 7.2:+27760948 None:intergenic
ACTGATCCAACCAAAGGAAT+GGG 0.516662 7.2:-27762180 MS.gene52446:CDS
TATGCCATCTTACACAAGCT+TGG 0.524193 7.2:-27762247 MS.gene52446:CDS
TTACACAAGCTTGGAAAGAA+GGG 0.524356 7.2:-27762238 MS.gene52446:CDS
GAGATATGGGAGGATACAAA+TGG 0.524396 7.2:-27761738 MS.gene52446:CDS
CATTTGGTGTGGATTCCAAA+AGG 0.529158 7.2:+27762133 None:intergenic
ATTCTGATAGAGCCAACATC+AGG 0.532002 7.2:-27762330 MS.gene52446:CDS
TCTAGTTGTATGAGAACTCA+TGG 0.537800 7.2:+27760653 None:intergenic
CAGTGAAGATGCAGTTAACA+TGG 0.541587 7.2:-27761194 MS.gene52446:CDS
AGGACATTGGCCTTGAAAGA+AGG 0.544017 7.2:-27761169 MS.gene52446:CDS
GTGCTGAATGGTGGTAAACC+TGG 0.548416 7.2:-27761497 MS.gene52446:intron
TAGCGGAGGCACGGTTTCCG+GGG 0.556029 7.2:-27761685 MS.gene52446:CDS
TATCTTAACAAAGTAACTGA+AGG 0.556227 7.2:-27762933 MS.gene52446:CDS
TGCCATGAAGGGATATAAGA+TGG 0.557496 7.2:-27762277 MS.gene52446:CDS
TTCAGCACATTACTTTCAGA+TGG 0.557589 7.2:+27761512 None:intergenic
CAGGTGCATTTCGAAACAAC+AGG 0.558100 7.2:-27761765 MS.gene52446:CDS
TGAAAACATGCAGCCAGTCT+CGG 0.562721 7.2:-27760690 MS.gene52446:CDS
AGAGCCAACATCAGGCAACA+TGG 0.563901 7.2:-27762322 MS.gene52446:CDS
CTACTGCTAGCATCAAAGAC+AGG 0.569459 7.2:-27762869 MS.gene52446:intron
GAACAAAGGCAAACTGATTG+TGG 0.571821 7.2:-27760939 MS.gene52446:CDS
GAATTTGATAACTCCTGGAA+AGG 0.576005 7.2:-27762449 MS.gene52446:intron
CTTGGAACAAGACGGATGAC+AGG 0.576272 7.2:+27760729 None:intergenic
CAGCATAAAAGCATTTGGTG+TGG 0.576924 7.2:+27762122 None:intergenic
GGCCTTGAAAGAAGGACTCA+TGG 0.577659 7.2:-27761161 MS.gene52446:intron
CAAACCAGACATACTGGACA+TGG 0.579358 7.2:-27761343 MS.gene52446:CDS
ACAAGTTGACATATTTGTGA+TGG 0.584399 7.2:-27761715 MS.gene52446:CDS
CCATTTCCAGTTATTTGATG+AGG 0.589789 7.2:+27761375 None:intergenic
CAAGTTGACATATTTGTGAT+GGG 0.592268 7.2:-27761714 MS.gene52446:CDS
GGGAATAGGTAGCGGAGGCA+CGG 0.600122 7.2:-27761694 MS.gene52446:CDS
AACAAAGTAACTGAAGGATG+TGG 0.601957 7.2:-27762927 MS.gene52446:CDS
TCTTCCATCATAGCAAGTGC+CGG 0.604090 7.2:+27762484 None:intergenic
GCCAGCATCCAATGATGATG+AGG 0.606622 7.2:-27763600 MS.gene52446:CDS
CTGTCTTTGATGCTAGCAGT+AGG 0.608366 7.2:+27762870 None:intergenic
ATGAAGAAGAGGTTCTCTTG+AGG 0.609055 7.2:+27763644 None:intergenic
ATCATATTAGATATATGGAG+TGG 0.610130 7.2:-27761537 MS.gene52446:intron
AAGATGCAGTTAACATGGCT+AGG 0.610341 7.2:-27761189 MS.gene52446:CDS
GAGCCAACATCAGGCAACAT+GGG 0.610601 7.2:-27762321 MS.gene52446:CDS
CCGAAGGTCTTGGAACAAGA+CGG 0.613637 7.2:+27760721 None:intergenic
TCTGAAAGTAATGTGCTGAA+TGG 0.619543 7.2:-27761509 MS.gene52446:CDS
TTTGTGATGGGAATAGGTAG+CGG 0.619890 7.2:-27761702 MS.gene52446:CDS
AAAAGATGAAGAATCAACAC+TGG 0.622283 7.2:+27763555 None:intergenic
ATTCTCACTGATCCAACCAA+AGG 0.629727 7.2:-27762186 MS.gene52446:CDS
TAATGATGATGATGAAGAAG+AGG 0.636238 7.2:+27763633 None:intergenic
TTTAAGATATTGTCCAACCC+CGG 0.638530 7.2:+27761668 None:intergenic
GACTGTTCATCCAAGTTTCG+GGG 0.652256 7.2:-27760759 MS.gene52446:CDS
AGCATCCAATGATGATGAGG+AGG 0.662832 7.2:-27763597 MS.gene52446:CDS
GATCCAACCAAAGGAATGGG+AGG 0.667757 7.2:-27762177 MS.gene52446:CDS
GAAAGTAATGTGCTGAATGG+TGG 0.674745 7.2:-27761506 MS.gene52446:CDS
GTGATGGGAATAGGTAGCGG+AGG 0.681582 7.2:-27761699 MS.gene52446:CDS
ACTTTGTTAAGATAAACAAG+TGG 0.682462 7.2:+27762942 None:intergenic
GCTAACCTACCTGAGAACAA+AGG 0.685849 7.2:-27760953 MS.gene52446:CDS
AACAGGTCCTGAGATATGGG+AGG 0.695778 7.2:-27761748 MS.gene52446:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAATTCTTGAATTT+TGG + chr7.2:27761019-27761038 None:intergenic 10.0%
!!! AAAAAAAATTCTTGAATTTT+GGG + chr7.2:27761018-27761037 None:intergenic 10.0%
!! TATGATTGAAAAAATTTCAA+AGG + chr7.2:27762767-27762786 None:intergenic 15.0%
!! TTTCAATCATATTAGATATA+TGG - chr7.2:27762776-27762795 MS.gene52446:intron 15.0%
!! AATCATTAGATGTATACAAA+AGG - chr7.2:27761117-27761136 MS.gene52446:intron 20.0%
!! ATACATAACTTACGTTAAAA+TGG - chr7.2:27762525-27762544 MS.gene52446:intron 20.0%
!! CATTGAATAAGAGAAAAAAT+TGG + chr7.2:27761310-27761329 None:intergenic 20.0%
!! GTAATATGAATTGTAATCTT+AGG + chr7.2:27762707-27762726 None:intergenic 20.0%
!! TACATAACTTACGTTAAAAT+GGG - chr7.2:27762526-27762545 MS.gene52446:intron 20.0%
!!! AAAAGGAATTTGAAATATAG+AGG + chr7.2:27761486-27761505 None:intergenic 20.0%
!!! AAAGGAATTTGAAATATAGA+GGG + chr7.2:27761485-27761504 None:intergenic 20.0%
!!! CAATTTATTTTTCAGCTTAT+TGG - chr7.2:27761346-27761365 MS.gene52446:CDS 20.0%
!!! TTTTTTCTTCGAATTTTTCT+AGG - chr7.2:27763298-27763317 MS.gene52446:intron 20.0%
! AAATTCGGTCAAATTTAAAG+CGG + chr7.2:27761516-27761535 None:intergenic 25.0%
! AATAATCGATGCAATTTGAA+AGG - chr7.2:27761710-27761729 MS.gene52446:CDS 25.0%
! AATGTTTGTTCTTCAAACTT+TGG + chr7.2:27761217-27761236 None:intergenic 25.0%
! ACTTTGTTAAGATAAACAAG+TGG + chr7.2:27761379-27761398 None:intergenic 25.0%
! AGAAAATCACCTTAACATTA+GGG + chr7.2:27762684-27762703 None:intergenic 25.0%
! ATAGTACTTTGTTCCTTAAT+TGG - chr7.2:27760889-27760908 MS.gene52446:intron 25.0%
! ATATACATGTACTTACTTCT+AGG + chr7.2:27763017-27763036 None:intergenic 25.0%
! ATCATATTAGATATATGGAG+TGG - chr7.2:27762781-27762800 MS.gene52446:intron 25.0%
! ATTCATGTGATTTACTTGAT+TGG + chr7.2:27761541-27761560 None:intergenic 25.0%
! CAATATTAAGGTGAAATTCA+TGG + chr7.2:27763246-27763265 None:intergenic 25.0%
! TACAAGAAAAAATCTCAAGA+AGG - chr7.2:27761745-27761764 MS.gene52446:CDS 25.0%
! TACTATTTATGTTCGAAACA+GGG - chr7.2:27762274-27762293 MS.gene52446:CDS 25.0%
! TATCTTAACAAAGTAACTGA+AGG - chr7.2:27761385-27761404 MS.gene52446:intron 25.0%
! TCACTTGCAATTCAATATTA+AGG + chr7.2:27763258-27763277 None:intergenic 25.0%
! TTCATGTTTGTGTTAATTGA+TGG - chr7.2:27761957-27761976 MS.gene52446:intron 25.0%
!! AAAAAGAATTTGATAACTCC+TGG - chr7.2:27761864-27761883 MS.gene52446:intron 25.0%
!! AAGGAATTTGAAATATAGAG+GGG + chr7.2:27761484-27761503 None:intergenic 25.0%
!! AGTTGGATAGAGAAATATTT+TGG + chr7.2:27760989-27761008 None:intergenic 25.0%
!! TTTACTTGATTGGTCAAATT+CGG + chr7.2:27761531-27761550 None:intergenic 25.0%
!!! TCAGTTCACTTTTTATCAAA+AGG - chr7.2:27761189-27761208 MS.gene52446:CDS 25.0%
!!! TGAAACATGTTTTTTGATGT+TGG + chr7.2:27760829-27760848 None:intergenic 25.0%
!!! TTATTTTTCAGCTTATTGGT+AGG - chr7.2:27761350-27761369 MS.gene52446:CDS 25.0%
AAAAGATGAAGAATCAACAC+TGG + chr7.2:27760766-27760785 None:intergenic 30.0%
ACAAACTTATGTTGTGTTGT+AGG - chr7.2:27763097-27763116 MS.gene52446:intron 30.0%
ATCACAAAACCCTAATGTTA+AGG - chr7.2:27762672-27762691 MS.gene52446:intron 30.0%
ATGTAAACAACGAGCAAAAT+TGG + chr7.2:27761922-27761941 None:intergenic 30.0%
CATCAAAAAACATGTTTCAC+AGG - chr7.2:27760830-27760849 MS.gene52446:intron 30.0%
GAGAAAATCACCTTAACATT+AGG + chr7.2:27762685-27762704 None:intergenic 30.0%
GGATCGTAAAAAATAGTAGT+TGG + chr7.2:27762427-27762446 None:intergenic 30.0%
GTACTATTTATGTTCGAAAC+AGG - chr7.2:27762273-27762292 MS.gene52446:CDS 30.0%
TACAACACAACATAAGTTTG+TGG + chr7.2:27763098-27763117 None:intergenic 30.0%
TGTTAACCTTACCTTAGTAT+TGG + chr7.2:27762241-27762260 None:intergenic 30.0%
TTACGTTAAAATGGGAAAAC+AGG - chr7.2:27762534-27762553 MS.gene52446:intron 30.0%
TTGTTAGATAGTAGCTATGA+CGG - chr7.2:27762297-27762316 MS.gene52446:CDS 30.0%
! ACAAGTTGACATATTTGTGA+TGG - chr7.2:27762603-27762622 MS.gene52446:intron 30.0%
! AGGAATTTGAAATATAGAGG+GGG + chr7.2:27761483-27761502 None:intergenic 30.0%
! CAAGTTGACATATTTGTGAT+GGG - chr7.2:27762604-27762623 MS.gene52446:intron 30.0%
! TAATGATGATGATGAAGAAG+AGG + chr7.2:27760688-27760707 None:intergenic 30.0%
! TTCTTCGAATTTTTCTAGGT+TGG - chr7.2:27763302-27763321 MS.gene52446:intron 30.0%
! TTTAAAGCGGTATCTACAAA+AGG + chr7.2:27761503-27761522 None:intergenic 30.0%
!! TGAATTTTGGGTAATGAAGT+TGG + chr7.2:27761006-27761025 None:intergenic 30.0%
AACAAAGTAACTGAAGGATG+TGG - chr7.2:27761391-27761410 MS.gene52446:intron 35.0%
AACATAAGTTTGTGGCAGTT+AGG + chr7.2:27763090-27763109 None:intergenic 35.0%
AACCATCTTATATCCCTTCA+TGG + chr7.2:27762046-27762065 None:intergenic 35.0%
ATCGATGCAATTTGAAAGGT+CGG - chr7.2:27761714-27761733 MS.gene52446:CDS 35.0%
ATTTGATGAGGACCTGTATA+TGG + chr7.2:27762934-27762953 None:intergenic 35.0%
CAAATAACTGGAAATGGTGT+TGG - chr7.2:27762949-27762968 MS.gene52446:CDS 35.0%
CAGCAGAACATCAACAAAAT+TGG + chr7.2:27761078-27761097 None:intergenic 35.0%
CCATTTCCAGTTATTTGATG+AGG + chr7.2:27762946-27762965 None:intergenic 35.0%
CCTCATCAAATAACTGGAAA+TGG - chr7.2:27762943-27762962 MS.gene52446:CDS 35.0%
GAAACAAAAAGATGCTTACC+AGG + chr7.2:27762842-27762861 None:intergenic 35.0%
TAAACAACGAGCAAAATTGG+TGG + chr7.2:27761919-27761938 None:intergenic 35.0%
TCTGAAAGTAATGTGCTGAA+TGG - chr7.2:27762809-27762828 MS.gene52446:intron 35.0%
TTACACAAGCTTGGAAAGAA+GGG - chr7.2:27762080-27762099 MS.gene52446:intron 35.0%
TTCAGCACATTACTTTCAGA+TGG + chr7.2:27762809-27762828 None:intergenic 35.0%
TTTCTTGAATTTCGACAGAC+CGG - chr7.2:27761815-27761834 MS.gene52446:intron 35.0%
! AAACCAGTGTTTGTTAACCA+CGG + chr7.2:27762448-27762467 None:intergenic 35.0%
! ATGCTGTAACTGTTTTGCAT+TGG - chr7.2:27760920-27760939 MS.gene52446:intron 35.0%
! GAAAAAGGCTTATGACCTTT+TGG - chr7.2:27762170-27762189 MS.gene52446:CDS 35.0%
! GAATTTGATAACTCCTGGAA+AGG - chr7.2:27761869-27761888 MS.gene52446:intron 35.0%
! GACATATTTGTGATGGGAAT+AGG - chr7.2:27762610-27762629 MS.gene52446:intron 35.0%
! TTTAAGATATTGTCCAACCC+CGG + chr7.2:27762653-27762672 None:intergenic 35.0%
! TTTGAAATATAGAGGGGGTA+AGG + chr7.2:27761478-27761497 None:intergenic 35.0%
!! TCAAGAAGGTCGTGTTTTTA+GGG - chr7.2:27761759-27761778 MS.gene52446:CDS 35.0%
!! TGTTGCAGCATAAAAGCATT+TGG + chr7.2:27762204-27762223 None:intergenic 35.0%
!!! AAATATTTTGGCCATACACG+TGG + chr7.2:27760977-27760996 None:intergenic 35.0%
!!! CTACTATTTTTTACGATCCG+TGG - chr7.2:27762428-27762447 MS.gene52446:intron 35.0%
!!! TGTTTTTTGATGTTGGTACC+AGG + chr7.2:27760822-27760841 None:intergenic 35.0%
AAACAACAGGTCCTGAGATA+TGG - chr7.2:27762566-27762585 MS.gene52446:intron 40.0%
AACAACAGGTCCTGAGATAT+GGG - chr7.2:27762567-27762586 MS.gene52446:intron 40.0%
AAGATGCAGTTAACATGGCT+AGG - chr7.2:27763129-27763148 MS.gene52446:intron 40.0%
AATGGGAGGAACAGTGAAAA+AGG - chr7.2:27762155-27762174 MS.gene52446:CDS 40.0%
ACAGGTCCTCATCAAATAAC+TGG - chr7.2:27762937-27762956 MS.gene52446:CDS 40.0%
ACTGATCCAACCAAAGGAAT+GGG - chr7.2:27762138-27762157 MS.gene52446:CDS 40.0%
AGACTGTTCATCCAAGTTTC+GGG - chr7.2:27763558-27763577 MS.gene52446:CDS 40.0%
AGCATCACAGTCACCAATTA+AGG + chr7.2:27760905-27760924 None:intergenic 40.0%
AGTTAACATGGCTAGGACAT+TGG - chr7.2:27763136-27763155 MS.gene52446:intron 40.0%
ATCAACCTCCTCATCATCAT+TGG + chr7.2:27760729-27760748 None:intergenic 40.0%
ATCAGTTTGCCTTTGTTCTC+AGG + chr7.2:27763377-27763396 None:intergenic 40.0%
ATGAAGAAGAGGTTCTCTTG+AGG + chr7.2:27760677-27760696 None:intergenic 40.0%
ATTCTCACTGATCCAACCAA+AGG - chr7.2:27762132-27762151 MS.gene52446:CDS 40.0%
ATTCTGATAGAGCCAACATC+AGG - chr7.2:27761988-27762007 MS.gene52446:intron 40.0%
CAAGTCTCTTACTGCGAAAT+CGG - chr7.2:27762901-27762920 MS.gene52446:CDS 40.0%
CAGACTGTTCATCCAAGTTT+CGG - chr7.2:27763557-27763576 MS.gene52446:CDS 40.0%
CAGTGAAGATGCAGTTAACA+TGG - chr7.2:27763124-27763143 MS.gene52446:intron 40.0%
CATACTGGACATGGATGTAA+TGG - chr7.2:27762984-27763003 MS.gene52446:intron 40.0%
CCATCAAATAGTGACTAGAG+CGG - chr7.2:27762369-27762388 MS.gene52446:intron 40.0%
CTTACACAAGCTTGGAAAGA+AGG - chr7.2:27762079-27762098 MS.gene52446:intron 40.0%
CTTTCCAAGCTTGTGTAAGA+TGG + chr7.2:27762078-27762097 None:intergenic 40.0%
GAAAGTAATGTGCTGAATGG+TGG - chr7.2:27762812-27762831 MS.gene52446:intron 40.0%
GAACAAAGGCAAACTGATTG+TGG - chr7.2:27763379-27763398 MS.gene52446:intron 40.0%
GAGATATGGGAGGATACAAA+TGG - chr7.2:27762580-27762599 MS.gene52446:intron 40.0%
GATTTGCCTAAAGATCTTCC+TGG - chr7.2:27760801-27760820 MS.gene52446:intron 40.0%
GGGAATCAGTTTGGCATTTA+TGG - chr7.2:27762017-27762036 MS.gene52446:intron 40.0%
TACCATGAGTCCTTCTTTCA+AGG + chr7.2:27763162-27763181 None:intergenic 40.0%
TATGCCATCTTACACAAGCT+TGG - chr7.2:27762071-27762090 MS.gene52446:intron 40.0%
TCGATTCAACTAACCTTTCC+AGG + chr7.2:27761885-27761904 None:intergenic 40.0%
TGCCATGAAGGGATATAAGA+TGG - chr7.2:27762041-27762060 MS.gene52446:intron 40.0%
TGGATTCAAACCAGACATAC+TGG - chr7.2:27762969-27762988 MS.gene52446:intron 40.0%
TTGGTACCAGGAAGATCTTT+AGG + chr7.2:27760810-27760829 None:intergenic 40.0%
TTTGTATCCTCCCATATCTC+AGG + chr7.2:27762580-27762599 None:intergenic 40.0%
! ATGCTTCGCACTGTGATTTT+AGG - chr7.2:27763489-27763508 MS.gene52446:CDS 40.0%
! CTCAAGAAGGTCGTGTTTTT+AGG - chr7.2:27761758-27761777 MS.gene52446:CDS 40.0%
! TTTGTGATGGGAATAGGTAG+CGG - chr7.2:27762616-27762635 MS.gene52446:intron 40.0%
!! AACCTTACCTTAGTATTGGC+TGG + chr7.2:27762237-27762256 None:intergenic 40.0%
!! ACCTTACCTTAGTATTGGCT+GGG + chr7.2:27762236-27762255 None:intergenic 40.0%
!! AGGGTTTGTATGAGAGCATT+TGG - chr7.2:27762099-27762118 MS.gene52446:CDS 40.0%
!! CAGCATAAAAGCATTTGGTG+TGG + chr7.2:27762199-27762218 None:intergenic 40.0%
!! CATTTGGTGTGGATTCCAAA+AGG + chr7.2:27762188-27762207 None:intergenic 40.0%
!! TTCTAGGTTGGTATATCGTC+TGG - chr7.2:27763314-27763333 MS.gene52446:intron 40.0%
ACATCCATGTCCAGTATGTC+TGG + chr7.2:27762982-27763001 None:intergenic 45.0%
ACCCAGCCAATACTAAGGTA+AGG - chr7.2:27762232-27762251 MS.gene52446:CDS 45.0%
AGACATTAATCGACCGAGAC+TGG + chr7.2:27763644-27763663 None:intergenic 45.0%
AGGCAACATGGGAATCAGTT+TGG - chr7.2:27762008-27762027 MS.gene52446:intron 45.0%
ATCGGATGTCGTCCATATAC+AGG - chr7.2:27762919-27762938 MS.gene52446:CDS 45.0%
ATTCCCATGTTGCCTGATGT+TGG + chr7.2:27762003-27762022 None:intergenic 45.0%
CAAACCAGACATACTGGACA+TGG - chr7.2:27762975-27762994 MS.gene52446:intron 45.0%
CACTGATCCAACCAAAGGAA+TGG - chr7.2:27762137-27762156 MS.gene52446:CDS 45.0%
CAGGTGCATTTCGAAACAAC+AGG - chr7.2:27762553-27762572 MS.gene52446:intron 45.0%
CCGCTCTAGTCACTATTTGA+TGG + chr7.2:27762372-27762391 None:intergenic 45.0%
CTACTGCTAGCATCAAAGAC+AGG - chr7.2:27761449-27761468 MS.gene52446:intron 45.0%
CTCATATCATGCCACGTGTA+TGG - chr7.2:27760963-27760982 MS.gene52446:CDS 45.0%
CTGTCTTTGATGCTAGCAGT+AGG + chr7.2:27761451-27761470 None:intergenic 45.0%
GACTGTTCATCCAAGTTTCG+GGG - chr7.2:27763559-27763578 MS.gene52446:CDS 45.0%
GATCCGTGGTTAACAAACAC+TGG - chr7.2:27762442-27762461 MS.gene52446:intron 45.0%
GCATTTATGGCTGCCATGAA+GGG - chr7.2:27762030-27762049 MS.gene52446:intron 45.0%
GCTAACCTACCTGAGAACAA+AGG - chr7.2:27763365-27763384 MS.gene52446:intron 45.0%
GTTTGCCTTTGTTCTCAGGT+AGG + chr7.2:27763373-27763392 None:intergenic 45.0%
TCCTCATCATCATTGGATGC+TGG + chr7.2:27760722-27760741 None:intergenic 45.0%
TCTTCCATCATAGCAAGTGC+CGG + chr7.2:27761837-27761856 None:intergenic 45.0%
TGAAAACATGCAGCCAGTCT+CGG - chr7.2:27763628-27763647 MS.gene52446:CDS 45.0%
TGGCAGTTAGGATAAACGCA+AGG + chr7.2:27763078-27763097 None:intergenic 45.0%
TTCCAACCCAGCCAATACTA+AGG - chr7.2:27762227-27762246 MS.gene52446:CDS 45.0%
! AACGAGCAAAATTGGTGGCA+TGG + chr7.2:27761914-27761933 None:intergenic 45.0%
! AGCATCCAATGATGATGAGG+AGG - chr7.2:27760721-27760740 MS.gene52446:CDS 45.0%
! TGTTTTCAGCTTCTGTCCGA+AGG + chr7.2:27763616-27763635 None:intergenic 45.0%
!! AGGACATTGGCCTTGAAAGA+AGG - chr7.2:27763149-27763168 MS.gene52446:intron 45.0%
!! TACCTTAGTATTGGCTGGGT+TGG + chr7.2:27762232-27762251 None:intergenic 45.0%
!!! TTTTTTAAACAATTTTTTAT+TGG - chr7.2:27761274-27761293 MS.gene52446:intron 5.0%
AACAGGTCCTGAGATATGGG+AGG - chr7.2:27762570-27762589 MS.gene52446:intron 50.0%
AGAGCCAACATCAGGCAACA+TGG - chr7.2:27761996-27762015 MS.gene52446:intron 50.0%
CACAGTTGCAGCACTCAGAT+TGG - chr7.2:27763343-27763362 MS.gene52446:intron 50.0%
CACTGTTCCTCCCATTCCTT+TGG + chr7.2:27762151-27762170 None:intergenic 50.0%
CCGAAGGTCTTGGAACAAGA+CGG + chr7.2:27763600-27763619 None:intergenic 50.0%
CTTGGAACAAGACGGATGAC+AGG + chr7.2:27763592-27763611 None:intergenic 50.0%
GAGCCAACATCAGGCAACAT+GGG - chr7.2:27761997-27762016 MS.gene52446:intron 50.0%
GATCCAACCAAAGGAATGGG+AGG - chr7.2:27762141-27762160 MS.gene52446:CDS 50.0%
GGCATTTATGGCTGCCATGA+AGG - chr7.2:27762029-27762048 MS.gene52446:intron 50.0%
GGCCTTGAAAGAAGGACTCA+TGG - chr7.2:27763157-27763176 MS.gene52446:intron 50.0%
GTGCTGAATGGTGGTAAACC+TGG - chr7.2:27762821-27762840 MS.gene52446:intron 50.0%
GTTCCTCCCATTCCTTTGGT+TGG + chr7.2:27762147-27762166 None:intergenic 50.0%
! AGGTATCGTTCCCCGAAACT+TGG + chr7.2:27763572-27763591 None:intergenic 50.0%
! CCGTCTTGTTCCAAGACCTT+CGG - chr7.2:27763597-27763616 MS.gene52446:CDS 50.0%
! GCCAGCATCCAATGATGATG+AGG - chr7.2:27760718-27760737 MS.gene52446:CDS 50.0%
CAGCTTCTGTCCGAAGGTCT+TGG + chr7.2:27763610-27763629 None:intergenic 55.0%
! GTGATGGGAATAGGTAGCGG+AGG - chr7.2:27762619-27762638 MS.gene52446:intron 55.0%
!! CAGACCGGCACTTGCTATGA+TGG - chr7.2:27761830-27761849 MS.gene52446:intron 55.0%
!! GGGAATAGGTAGCGGAGGCA+CGG - chr7.2:27762624-27762643 MS.gene52446:intron 60.0%
! GTAGCGGAGGCACGGTTTCC+GGG - chr7.2:27762632-27762651 MS.gene52446:intron 65.0%
! TAGCGGAGGCACGGTTTCCG+GGG - chr7.2:27762633-27762652 MS.gene52446:intron 65.0%
!! GGTAGCGGAGGCACGGTTTC+CGG - chr7.2:27762631-27762650 MS.gene52446:intron 65.0%
! GGAGGCACGGTTTCCGGGGT+TGG - chr7.2:27762637-27762656 MS.gene52446:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 27760654 27763686 27760654 ID=MS.gene52446
chr7.2 mRNA 27760654 27763686 27760654 ID=MS.gene52446.t1;Parent=MS.gene52446
chr7.2 exon 27763489 27763686 27763489 ID=MS.gene52446.t1.exon1;Parent=MS.gene52446.t1
chr7.2 CDS 27763489 27763686 27763489 ID=cds.MS.gene52446.t1;Parent=MS.gene52446.t1
chr7.2 exon 27762870 27762979 27762870 ID=MS.gene52446.t1.exon2;Parent=MS.gene52446.t1
chr7.2 CDS 27762870 27762979 27762870 ID=cds.MS.gene52446.t1;Parent=MS.gene52446.t1
chr7.2 exon 27762450 27762507 27762450 ID=MS.gene52446.t1.exon3;Parent=MS.gene52446.t1
chr7.2 CDS 27762450 27762507 27762450 ID=cds.MS.gene52446.t1;Parent=MS.gene52446.t1
chr7.2 exon 27762092 27762355 27762092 ID=MS.gene52446.t1.exon4;Parent=MS.gene52446.t1
chr7.2 CDS 27762092 27762355 27762092 ID=cds.MS.gene52446.t1;Parent=MS.gene52446.t1
chr7.2 exon 27761647 27761784 27761647 ID=MS.gene52446.t1.exon5;Parent=MS.gene52446.t1
chr7.2 CDS 27761647 27761784 27761647 ID=cds.MS.gene52446.t1;Parent=MS.gene52446.t1
chr7.2 exon 27761498 27761549 27761498 ID=MS.gene52446.t1.exon6;Parent=MS.gene52446.t1
chr7.2 CDS 27761498 27761549 27761498 ID=cds.MS.gene52446.t1;Parent=MS.gene52446.t1
chr7.2 exon 27761320 27761399 27761320 ID=MS.gene52446.t1.exon7;Parent=MS.gene52446.t1
chr7.2 CDS 27761320 27761399 27761320 ID=cds.MS.gene52446.t1;Parent=MS.gene52446.t1
chr7.2 exon 27761162 27761221 27761162 ID=MS.gene52446.t1.exon8;Parent=MS.gene52446.t1
chr7.2 CDS 27761162 27761221 27761162 ID=cds.MS.gene52446.t1;Parent=MS.gene52446.t1
chr7.2 exon 27760936 27761020 27760936 ID=MS.gene52446.t1.exon9;Parent=MS.gene52446.t1
chr7.2 CDS 27760936 27761020 27760936 ID=cds.MS.gene52446.t1;Parent=MS.gene52446.t1
chr7.2 exon 27760654 27760793 27760654 ID=MS.gene52446.t1.exon10;Parent=MS.gene52446.t1
chr7.2 CDS 27760654 27760793 27760654 ID=cds.MS.gene52446.t1;Parent=MS.gene52446.t1
Gene Sequence

>MS.gene52446

ATGGCTTCTCTAATGAGCTTCCTCAAGAGAACCTCTTCTTCATCATCATCATTAGCAGTTGCATGCCAGCATCCAATGATGATGAGGAGGTTGATGACAACAACAGCAACCAGTGTTGATTCTTCATCTTTTGCTCAGAGAATCAGAGATTTGCCTAAAGATCTTCCTGGTACCAACATCAAAAAACATGTTTCACAGGTACATAAACATGTTTTTTCATTACAAAGACAGCAACATAGTACTTTGTTCCTTAATTGGTGACTGTGATGCTGTAACTGTTTTGCATTGGCTTTCTGTTTCTAGTGTTCACTCATATCATGCCACGTGTATGGCCAAAATATTTCTCTATCCAACTTCATTACCCAAAATTCAAGAATTTTTTTTTGTACAGATACTAGTAGATCTTGAAGTTATTTTGTATCCAATTTTGTTGATGTTCTGCTGCATGTGATGTTAATAGAAGAATCATTAGATGTATACAAAAGGAAATGTTAAAAGAGAACTTAATTTTTCAGCTTTCACTTAACTTTTTCTGTCAGTTCACTTTTTATCAAAAGGAACCAAAGTTTGAAGAACAAACATTTTATGAAATAAATAATAATCAATGTTTCTATTTTTGTTTTTTTAAACAATTTTTTATTGGAGTATAATTTCCAATTTTTTCTCTTATTCAATGCAAATCTGAATTAGAACAATTTATTTTTCAGCTTATTGGTAGGACTCCACTTGTTTATCTTAACAAAGTAACTGAAGGATGTGGTGCTTATATTGCTGTTAAGCAAGAGATGATGCAGCCTACTGCTAGCATCAAAGACAGGTTACCTTACCCCCTCTATATTTCAAATTCCTTTTGTAGATACCGCTTTAAATTTGACCGAATTTGACCAATCAAGTAAATCACATGAATTAATAAAGTTGTTTTAGTTGTGATAAATTTGCTGATAATTGATATTGTTTTACAAGTTTACTCTTCGTGAGCGATAATTAGTTTAAGTTTTCATCATAGTATTTATTGTGTAAAAATATGTAACATAATTATGTGTATGTTAGTAAAGAAATAATCGATGCAATTTGAAAGGTCGGAAAAAATATACAAGAAAAAATCTCAAGAAGGTCGTGTTTTTAGGGACGAGTACAAGTTTGTAACATAACTTTTGTGAATTTCTTGAATTTCGACAGACCGGCACTTGCTATGATGGAAGATGCTGAGAAAAAGAATTTGATAACTCCTGGAAAGGTTAGTTGAATCGAATCATGCCATGCCACCAATTTTGCTCGTTGTTTACATATAGATTGATGCTGATTCATGTTTGTGTTAATTGATGGTGTAGACAATTCTGATAGAGCCAACATCAGGCAACATGGGAATCAGTTTGGCATTTATGGCTGCCATGAAGGGATATAAGATGGTTTTGACTATGCCATCTTACACAAGCTTGGAAAGAAGGGTTTGTATGAGAGCATTTGGAGCTGAATTGATTCTCACTGATCCAACCAAAGGAATGGGAGGAACAGTGAAAAAGGCTTATGACCTTTTGGAATCCACACCAAATGCTTTTATGCTGCAACAATTTTCCAACCCAGCCAATACTAAGGTAAGGTTAACATAACTTGAATTAGTACTATTTATGTTCGAAACAGGGTTGTTAGATAGTAGCTATGACGGTTCTATGACGCTATCTTTTGTTCTTCGATACGATATTCAGTACAAAATTCCATCAAATAGTGACTAGAGCGGTGCTATAGTTCTATTGCGTATCAGAATTTGAACCAACTACTATTTTTTACGATCCGTGGTTAACAAACACTGGTTTGAAATCTTTGACTAAGAAAAAAATCTATGAAACTATGCTTATGCTATACTTGTGTTTATACATAACTTACGTTAAAATGGGAAAACAGGTGCATTTCGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTGATGGGAATAGGTAGCGGAGGCACGGTTTCCGGGGTTGGACAATATCTTAAATCACAAAACCCTAATGTTAAGGTGATTTTCTCCTAAGATTACAATTCATATTACTAACTAAAAAGTGTTCTGTTAGATAGTTTCATTGAATCCTTTGAAATTTTTTCAATCATATTAGATATATGGAGTGGAGCCATCTGAAAGTAATGTGCTGAATGGTGGTAAACCTGGTAAGCATCTTTTTGTTTCTTCGATATTATTTCACTTTTTTATGTGATAAAATCTGTACAAGTCTCTTACTGCGAAATCGGATGTCGTCCATATACAGGTCCTCATCAAATAACTGGAAATGGTGTTGGATTCAAACCAGACATACTGGACATGGATGTAATGGAAAAAGTCCTAGAAGTAAGTACATGTATATGTATTACGTTTTGCGACATAGAGATTCAGCTTGAAAAGCCTTGCGTTTATCCTAACTGCCACAAACTTATGTTGTGTTGTAGGTTAGCAGTGAAGATGCAGTTAACATGGCTAGGACATTGGCCTTGAAAGAAGGACTCATGGTAATCTTCAAATGACAATTTTGTACACTTTTTGAAACATGAAATATGAGAAACTTCGATTTGACCATGAATTTCACCTTAATATTGAATTGCAAGTGAAAGTTTGATATTTTAACTATTTTTTTCTTCGAATTTTTCTAGGTTGGTATATCGTCTGGAGCAAACACAGTTGCAGCACTCAGATTGGCTAACCTACCTGAGAACAAAGGCAAACTGATTGTGGTAAGTACAATTTTATTTGAAATATGCAAGCAAATGACACTTCTGTCTTTTTTATCGTAATCTAATTTGAGACGCTGTAAATAAAAATATGCTTCGCACTGTGATTTTAGGCATCAAATTTCTCTATTTTTGTTGCTAATGTGAAGACTTGAATTTCAGACTGTTCATCCAAGTTTCGGGGAACGATACCTGTCATCCGTCTTGTTCCAAGACCTTCGGACAGAAGCTGAAAACATGCAGCCAGTCTCGGTCGATTAATGTCTTCCATGAGTTCTCATACAACTAG

Protein sequence

>MS.gene52446.t1

MASLMSFLKRTSSSSSSLAVACQHPMMMRRLMTTTATSVDSSSFAQRIRDLPKDLPGTNIKKHVSQLIGRTPLVYLNKVTEGCGAYIAVKQEMMQPTASIKDRPALAMMEDAEKKNLITPGKTILIEPTSGNMGISLAFMAAMKGYKMVLTMPSYTSLERRVCMRAFGAELILTDPTKGMGGTVKKAYDLLESTPNAFMLQQFSNPANTKVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSQNPNVKIYGVEPSESNVLNGGKPGPHQITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARTLALKEGLMVGISSGANTVAALRLANLPENKGKLIVVNLNFRLFIQVSGNDTCHPSCSKTFGQKLKTCSQSRSINVFHEFSYN