Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007115.t1 | XP_013450229.1 | 96.7 | 334 | 10 | 1 | 1 | 334 | 1 | 333 | 5.20E-183 | 650.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007115.t1 | Q8LFU0 | 45.7 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 2.0e-50 | 201.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007115.t1 | I3TAV2 | 96.7 | 334 | 10 | 1 | 1 | 334 | 1 | 333 | 3.7e-183 | 650.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene007115.t1 | TF | NF-YA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23087 | MS.gene007115 | PPI |
| MS.gene007115 | MS.gene23087 | PPI |
| MS.gene007115 | MS.gene41018 | PPI |
| MS.gene007115 | MS.gene46438 | PPI |
| MS.gene007115 | MS.gene034730 | PPI |
| MS.gene007115 | MS.gene26493 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007115.t1 | MTR_7g106450 | 96.707 | 334 | 10 | 1 | 1 | 334 | 1 | 333 | 0.0 | 672 |
| MS.gene007115.t1 | MTR_1g056530 | 70.393 | 331 | 89 | 6 | 1 | 327 | 1 | 326 | 5.17e-156 | 440 |
| MS.gene007115.t1 | MTR_8g037270 | 47.682 | 151 | 58 | 7 | 99 | 231 | 72 | 219 | 1.14e-30 | 118 |
| MS.gene007115.t1 | MTR_2g041090 | 49.296 | 142 | 51 | 7 | 115 | 236 | 10 | 150 | 4.86e-29 | 112 |
| MS.gene007115.t1 | MTR_2g030170 | 51.923 | 104 | 48 | 1 | 135 | 236 | 80 | 183 | 4.23e-28 | 108 |
| MS.gene007115.t1 | MTR_3g061510 | 48.031 | 127 | 51 | 5 | 106 | 221 | 104 | 226 | 4.47e-28 | 111 |
| MS.gene007115.t1 | MTR_3g061510 | 48.031 | 127 | 51 | 5 | 106 | 221 | 124 | 246 | 7.02e-28 | 111 |
| MS.gene007115.t1 | MTR_2g030170 | 58.750 | 80 | 33 | 0 | 157 | 236 | 137 | 216 | 5.72e-27 | 106 |
| MS.gene007115.t1 | MTR_2g099490 | 55.556 | 99 | 36 | 3 | 136 | 226 | 134 | 232 | 8.92e-26 | 105 |
| MS.gene007115.t1 | MTR_8g019540 | 47.458 | 118 | 47 | 4 | 122 | 226 | 110 | 225 | 2.24e-25 | 104 |
| MS.gene007115.t1 | MTR_2g099490 | 52.041 | 98 | 40 | 2 | 136 | 226 | 151 | 248 | 2.98e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007115.t1 | AT5G06510 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 1.09e-67 | 213 |
| MS.gene007115.t1 | AT5G06510 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 1.09e-67 | 213 |
| MS.gene007115.t1 | AT5G06510 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 1.09e-67 | 213 |
| MS.gene007115.t1 | AT5G06510 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 1.09e-67 | 213 |
| MS.gene007115.t1 | AT3G05690 | 44.410 | 322 | 112 | 18 | 34 | 333 | 18 | 294 | 8.47e-61 | 196 |
| MS.gene007115.t1 | AT5G06510 | 48.963 | 241 | 78 | 10 | 96 | 332 | 19 | 218 | 1.68e-60 | 193 |
| MS.gene007115.t1 | AT3G05690 | 44.340 | 318 | 118 | 18 | 34 | 333 | 55 | 331 | 4.94e-60 | 196 |
| MS.gene007115.t1 | AT5G06510 | 49.268 | 205 | 65 | 9 | 132 | 332 | 3 | 172 | 1.01e-49 | 164 |
| MS.gene007115.t1 | AT5G06510 | 49.268 | 205 | 65 | 9 | 132 | 332 | 3 | 172 | 1.01e-49 | 164 |
| MS.gene007115.t1 | AT2G34720 | 50.820 | 122 | 46 | 4 | 125 | 233 | 44 | 164 | 1.36e-32 | 120 |
| MS.gene007115.t1 | AT1G30500 | 53.846 | 104 | 42 | 1 | 129 | 226 | 53 | 156 | 4.94e-31 | 115 |
| MS.gene007115.t1 | AT2G34720 | 53.097 | 113 | 39 | 4 | 134 | 233 | 18 | 129 | 7.93e-31 | 114 |
| MS.gene007115.t1 | AT2G34720 | 53.097 | 113 | 39 | 4 | 134 | 233 | 18 | 129 | 7.93e-31 | 114 |
| MS.gene007115.t1 | AT1G30500 | 51.852 | 108 | 42 | 2 | 129 | 226 | 53 | 160 | 2.49e-30 | 114 |
| MS.gene007115.t1 | AT1G72830 | 54.717 | 106 | 34 | 3 | 134 | 226 | 135 | 239 | 4.24e-29 | 114 |
| MS.gene007115.t1 | AT5G12840 | 44.516 | 155 | 67 | 6 | 125 | 267 | 122 | 269 | 5.15e-29 | 113 |
| MS.gene007115.t1 | AT5G12840 | 44.516 | 155 | 67 | 6 | 125 | 267 | 122 | 269 | 5.15e-29 | 113 |
| MS.gene007115.t1 | AT5G12840 | 44.516 | 155 | 67 | 6 | 125 | 267 | 122 | 269 | 5.15e-29 | 113 |
| MS.gene007115.t1 | AT5G12840 | 44.516 | 155 | 67 | 6 | 125 | 267 | 121 | 268 | 5.20e-29 | 113 |
| MS.gene007115.t1 | AT5G12840 | 44.516 | 155 | 67 | 6 | 125 | 267 | 121 | 268 | 5.20e-29 | 113 |
| MS.gene007115.t1 | AT1G72830 | 54.206 | 107 | 34 | 4 | 134 | 226 | 135 | 240 | 1.53e-27 | 110 |
| MS.gene007115.t1 | AT3G20910 | 43.571 | 140 | 66 | 3 | 135 | 263 | 126 | 263 | 9.33e-26 | 105 |
| MS.gene007115.t1 | AT1G17590 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.03e-25 | 105 |
| MS.gene007115.t1 | AT1G17590 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.03e-25 | 105 |
| MS.gene007115.t1 | AT1G17590 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.03e-25 | 105 |
| MS.gene007115.t1 | AT1G17590 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.03e-25 | 105 |
| MS.gene007115.t1 | AT3G14020 | 55.670 | 97 | 34 | 3 | 134 | 226 | 140 | 231 | 1.17e-25 | 104 |
| MS.gene007115.t1 | AT3G14020 | 55.670 | 97 | 34 | 3 | 134 | 226 | 140 | 231 | 1.17e-25 | 104 |
| MS.gene007115.t1 | AT1G54160 | 59.211 | 76 | 30 | 1 | 151 | 226 | 164 | 238 | 1.63e-23 | 99.0 |
| MS.gene007115.t1 | AT1G72830 | 49.474 | 95 | 31 | 2 | 134 | 226 | 135 | 214 | 8.57e-20 | 88.6 |
Find 92 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTACAGAATCAAGCTTTA+AGG | 0.131683 | 7.1:-6289806 | None:intergenic |
| TTTGGATCTCAATCCCTTTA+TGG | 0.173015 | 7.1:+6287065 | MS.gene007115:CDS |
| ACCTCTGATCCAGAAATATT+TGG | 0.179271 | 7.1:-6289636 | None:intergenic |
| GGAAGCAGCCCAAATATTTC+TGG | 0.235006 | 7.1:+6289627 | MS.gene007115:CDS |
| TCAAAGCGATTCGGGGTATC+AGG | 0.251958 | 7.1:-6288310 | None:intergenic |
| GAACTCCTTGAATCTGATAT+TGG | 0.275281 | 7.1:+6289576 | MS.gene007115:CDS |
| AATCACTTTACCATCTTTCC+AGG | 0.307723 | 7.1:+6287209 | MS.gene007115:CDS |
| GCACCATGGTGGAGTAGTTT+TGG | 0.325147 | 7.1:+6287047 | MS.gene007115:CDS |
| ATCCCAGCTCAAAGCGATTC+GGG | 0.326860 | 7.1:-6288318 | None:intergenic |
| AATCGCTTTGAGCTGGGATT+TGG | 0.348352 | 7.1:+6288322 | MS.gene007115:CDS |
| CCAATGAAAAGGATTTGATT+TGG | 0.354007 | 7.1:-6287100 | None:intergenic |
| GCCAATGGAGATGGTAAAAC+TGG | 0.357725 | 7.1:+6289495 | MS.gene007115:CDS |
| GCCAGCTGCTGTTACCCATT+TGG | 0.363280 | 7.1:-6289772 | None:intergenic |
| AACTCTTCAAAGGAAACTAA+TGG | 0.364196 | 7.1:+6289606 | MS.gene007115:CDS |
| GGCCACCAGACTCTCCATAA+AGG | 0.392293 | 7.1:-6287079 | None:intergenic |
| TGGATCTTCTGTCCACTCTA+TGG | 0.396364 | 7.1:+6289710 | MS.gene007115:CDS |
| GCCACCAGACTCTCCATAAA+GGG | 0.396734 | 7.1:-6287078 | None:intergenic |
| GACTGCCGACTGCAATGATA+TGG | 0.407221 | 7.1:-6288287 | None:intergenic |
| AATCCCAGCTCAAAGCGATT+CGG | 0.417399 | 7.1:-6288319 | None:intergenic |
| CATCATCAGATGTCATGTTA+AGG | 0.417508 | 7.1:-6288715 | None:intergenic |
| AAAAGACACACTTGAATTTG+AGG | 0.417906 | 7.1:-6288551 | None:intergenic |
| CCTCTGATCCAGAAATATTT+GGG | 0.418372 | 7.1:-6289635 | None:intergenic |
| AGAGGAACTGAACATGTGTT+TGG | 0.420524 | 7.1:+6287173 | MS.gene007115:CDS |
| CAATCCCTTTATGGAGAGTC+TGG | 0.421990 | 7.1:+6287074 | MS.gene007115:CDS |
| GTGTTATCATGCCGACCAAA+TGG | 0.422418 | 7.1:+6289757 | MS.gene007115:CDS |
| AAGTTCCAATATCAGATTCA+AGG | 0.429838 | 7.1:-6289581 | None:intergenic |
| TATGGACTCATCTCAACCTA+TGG | 0.435805 | 7.1:+6288527 | MS.gene007115:CDS |
| GGAAGTAAAGTGCATAAATT+CGG | 0.437987 | 7.1:+6289516 | MS.gene007115:CDS |
| TTTGTGACCAAGTACAGCTT+TGG | 0.439346 | 7.1:-6288798 | None:intergenic |
| CTCTCGGTCGCCGCATTGCA+TGG | 0.444185 | 7.1:-6289437 | None:intergenic |
| TTTGTGGGGCAATTATCATC+TGG | 0.452637 | 7.1:+6287005 | MS.gene007115:CDS |
| ATCATCAGATGTCATGTTAA+GGG | 0.456801 | 7.1:-6288714 | None:intergenic |
| TGGAAAGATGGTAAAGTGAT+TGG | 0.466352 | 7.1:-6287207 | None:intergenic |
| TGCTTAGCATTCACATAAAT+AGG | 0.466962 | 7.1:-6288740 | None:intergenic |
| GAGGAACTGAACATGTGTTT+GGG | 0.473124 | 7.1:+6287174 | MS.gene007115:CDS |
| CTGAACATGTGTTTGGGAAA+GGG | 0.489888 | 7.1:+6287180 | MS.gene007115:CDS |
| TCCCGCGCCAAAGCTGTACT+TGG | 0.491975 | 7.1:+6288791 | MS.gene007115:CDS |
| ACCCCGAATCGCTTTGAGCT+GGG | 0.493523 | 7.1:+6288316 | MS.gene007115:CDS |
| TACCCCGAATCGCTTTGAGC+TGG | 0.494554 | 7.1:+6288315 | MS.gene007115:CDS |
| CCATAAAATTGATCTGCATA+AGG | 0.496364 | 7.1:-6288509 | None:intergenic |
| AAATTACAAACCTGGAAAGA+TGG | 0.499330 | 7.1:-6287219 | None:intergenic |
| ACCAAATGGGTAACAGCAGC+TGG | 0.501310 | 7.1:+6289771 | MS.gene007115:CDS |
| CATAGGTGGCTCCAATGAAA+AGG | 0.504139 | 7.1:-6287111 | None:intergenic |
| CACTTGAATTTGAGGTCCAT+AGG | 0.510920 | 7.1:-6288543 | None:intergenic |
| TGGAACTTTAAACTCTTCAA+AGG | 0.511753 | 7.1:+6289596 | MS.gene007115:CDS |
| AGGTGACTAGTTTGTATTCG+AGG | 0.519014 | 7.1:+6289655 | MS.gene007115:CDS |
| TGGCGTGACTCGTGCATGTA+GGG | 0.520062 | 7.1:-6289411 | None:intergenic |
| GCTGGGATTTGGTCAACCTA+TGG | 0.529602 | 7.1:+6288333 | MS.gene007115:CDS |
| ATGGCGTGACTCGTGCATGT+AGG | 0.531463 | 7.1:-6289412 | None:intergenic |
| TGTTATCATGCCGACCAAAT+GGG | 0.536297 | 7.1:+6289758 | MS.gene007115:CDS |
| TGCAATGATATGGCTGTATG+AGG | 0.536424 | 7.1:-6288277 | None:intergenic |
| AGCTTTACCGTCAATCACCT+TGG | 0.539572 | 7.1:+6289690 | MS.gene007115:CDS |
| CTTAACATGACATCTGATGA+TGG | 0.543590 | 7.1:+6288716 | MS.gene007115:CDS |
| GGTGACTAGTTTGTATTCGA+GGG | 0.543743 | 7.1:+6289656 | MS.gene007115:CDS |
| ACTGAACATGTGTTTGGGAA+AGG | 0.545969 | 7.1:+6287179 | MS.gene007115:CDS |
| AAGAAATCTGCCAATGGAGA+TGG | 0.548636 | 7.1:+6289486 | MS.gene007115:CDS |
| ATGCGGCGACCGAGAGGATG+TGG | 0.549647 | 7.1:+6289444 | MS.gene007115:CDS |
| CCCAAATATTTCTGGATCAG+AGG | 0.555972 | 7.1:+6289635 | MS.gene007115:CDS |
| ATTGCTTAGTTGCAGCAAGT+TGG | 0.559108 | 7.1:-6287145 | None:intergenic |
| GACATGATCGATGGTGGGCG+TGG | 0.559837 | 7.1:+6289735 | MS.gene007115:CDS |
| ACCAAGTACAGCTTTGGCGC+GGG | 0.561918 | 7.1:-6288792 | None:intergenic |
| AGAAGATCCAAGGTGATTGA+CGG | 0.562013 | 7.1:-6289697 | None:intergenic |
| GCTGCTGTTACCCATTTGGT+CGG | 0.574530 | 7.1:-6289768 | None:intergenic |
| ATGGCAGACATGATCGATGG+TGG | 0.576851 | 7.1:+6289729 | MS.gene007115:CDS |
| GTCGCCGCATTGCATGGAGA+TGG | 0.577807 | 7.1:-6289431 | None:intergenic |
| CAAAGCGATTCGGGGTATCA+GGG | 0.579590 | 7.1:-6288309 | None:intergenic |
| GTTTATCTGAAAGAACATGA+TGG | 0.580817 | 7.1:+6286969 | MS.gene007115:CDS |
| CAAATTGATTAAACGTAACA+AGG | 0.583050 | 7.1:+6288817 | MS.gene007115:CDS |
| CGATCATGTCTGCCATAGAG+TGG | 0.586528 | 7.1:-6289722 | None:intergenic |
| TCATCAGATGTCATGTTAAG+GGG | 0.601001 | 7.1:-6288713 | None:intergenic |
| AGTTGGTCAACAGCAGACAT+AGG | 0.601111 | 7.1:-6287128 | None:intergenic |
| GACCAAGTACAGCTTTGGCG+CGG | 0.601436 | 7.1:-6288793 | None:intergenic |
| TACAGCCATATCATTGCAGT+CGG | 0.605390 | 7.1:+6288282 | MS.gene007115:CDS |
| GTGAATGCTAAGCAGTACAA+TGG | 0.608645 | 7.1:+6288749 | MS.gene007115:CDS |
| AGTCAACAATTGCAGTTCAG+TGG | 0.610037 | 7.1:+6289540 | MS.gene007115:CDS |
| GCAACTAAGCAATCTGCTAG+AGG | 0.619360 | 7.1:+6287155 | MS.gene007115:CDS |
| TGGCAGACATGATCGATGGT+GGG | 0.625708 | 7.1:+6289730 | MS.gene007115:CDS |
| TAGAGTGGACAGAAGATCCA+AGG | 0.626448 | 7.1:-6289707 | None:intergenic |
| CATGCAATGCGGCGACCGAG+AGG | 0.626832 | 7.1:+6289438 | MS.gene007115:CDS |
| AACACAAAGAAATCTGCCAA+TGG | 0.628709 | 7.1:+6289480 | MS.gene007115:CDS |
| AAACGACCACCACATCCTCT+CGG | 0.633569 | 7.1:-6289453 | None:intergenic |
| GTGACTAGTTTGTATTCGAG+GGG | 0.634644 | 7.1:+6289657 | MS.gene007115:CDS |
| TCCCTTTATGGAGAGTCTGG+TGG | 0.654622 | 7.1:+6287077 | MS.gene007115:CDS |
| TCCCAGCTCAAAGCGATTCG+GGG | 0.658985 | 7.1:-6288317 | None:intergenic |
| TCTATGGCAGACATGATCGA+TGG | 0.660420 | 7.1:+6289726 | MS.gene007115:CDS |
| CGGCGACCGAGAGGATGTGG+TGG | 0.666958 | 7.1:+6289447 | MS.gene007115:CDS |
| ATTCAGCTGCTGCACCATGG+TGG | 0.677437 | 7.1:+6287036 | MS.gene007115:CDS |
| TGGTCAACAGCAGACATAGG+TGG | 0.678879 | 7.1:-6287125 | None:intergenic |
| CACGCCATCTCCATGCAATG+CGG | 0.685964 | 7.1:+6289427 | MS.gene007115:CDS |
| ATAATTCAGCTGCTGCACCA+TGG | 0.686059 | 7.1:+6287033 | MS.gene007115:CDS |
| ACAATGGAATCATTAGACGT+CGG | 0.715449 | 7.1:+6288765 | MS.gene007115:CDS |
| GATCCAAAACTACTCCACCA+TGG | 0.743317 | 7.1:-6287050 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTGTTATTAACATTCT+TGG | - | chr7.1:6289266-6289285 | None:intergenic | 15.0% |
| !!! | AATATTTGAGTTGTTTTATT+TGG | + | chr7.1:6287337-6287356 | MS.gene007115:intron | 15.0% |
| !! | AAGTTATCATCTATAACTTA+TGG | - | chr7.1:6287498-6287517 | None:intergenic | 20.0% |
| !! | AATAAAAAATCTTTGCATTC+TGG | + | chr7.1:6287708-6287727 | MS.gene007115:intron | 20.0% |
| !! | AGTTTCCAAACAATAAAAAA+TGG | - | chr7.1:6288062-6288081 | None:intergenic | 20.0% |
| !! | TATATGTGTGTTATAGATTT+AGG | - | chr7.1:6287623-6287642 | None:intergenic | 20.0% |
| !! | TCTGCTTGAAAAAAAATAAA+AGG | - | chr7.1:6289106-6289125 | None:intergenic | 20.0% |
| !! | TGAAATTATAGGAATCTAAT+AGG | - | chr7.1:6287959-6287978 | None:intergenic | 20.0% |
| !!! | ACATTTTTATCTAGTTAGAT+AGG | - | chr7.1:6287820-6287839 | None:intergenic | 20.0% |
| !!! | ATTTTCTAACAATGCAAAAA+TGG | + | chr7.1:6287932-6287951 | MS.gene007115:intron | 20.0% |
| !!! | CATTTTTATCTAGTTAGATA+GGG | - | chr7.1:6287819-6287838 | None:intergenic | 20.0% |
| !!! | GTTTGACTTAATTTTATCTT+TGG | + | chr7.1:6287527-6287546 | MS.gene007115:intron | 20.0% |
| !!! | TCAAATGGTTTTAAACTATA+GGG | + | chr7.1:6288094-6288113 | MS.gene007115:intron | 20.0% |
| !!! | TTCAAATGGTTTTAAACTAT+AGG | + | chr7.1:6288093-6288112 | MS.gene007115:intron | 20.0% |
| !!! | TTTTATTGTTTGGAAACTAT+AGG | + | chr7.1:6288064-6288083 | MS.gene007115:intron | 20.0% |
| ! | AAAAAATGGTCCCTATAAAT+TGG | - | chr7.1:6288048-6288067 | None:intergenic | 25.0% |
| ! | AAGAAGAAACATTTGAAAGT+TGG | - | chr7.1:6288222-6288241 | None:intergenic | 25.0% |
| ! | ACAAAACAAGTCCAATTTAT+AGG | + | chr7.1:6288034-6288053 | MS.gene007115:intron | 25.0% |
| ! | ACTATAGGAATTCTTTCAAA+TGG | + | chr7.1:6288079-6288098 | MS.gene007115:intron | 25.0% |
| ! | AGACTATTTACTATAGCTTA+CGG | + | chr7.1:6287454-6287473 | MS.gene007115:intron | 25.0% |
| ! | ATATGAGGAATCATGAAATA+AGG | + | chr7.1:6289130-6289149 | MS.gene007115:intron | 25.0% |
| ! | ATGTTTGTATGTAACAATGT+AGG | + | chr7.1:6288676-6288695 | MS.gene007115:intron | 25.0% |
| ! | CAAAACAAGTCCAATTTATA+GGG | + | chr7.1:6288035-6288054 | MS.gene007115:intron | 25.0% |
| ! | CAAATTGATTAAACGTAACA+AGG | + | chr7.1:6288817-6288836 | MS.gene007115:CDS | 25.0% |
| ! | CATTATTGGAGTGAAATTAT+AGG | - | chr7.1:6287970-6287989 | None:intergenic | 25.0% |
| ! | GGCAATAATTTGAAAAGAAA+TGG | + | chr7.1:6287305-6287324 | MS.gene007115:intron | 25.0% |
| ! | TCAAAAAATGTATGGCAAAA+AGG | - | chr7.1:6287667-6287686 | None:intergenic | 25.0% |
| ! | TCAAAATATCTTCAGAAGTA+AGG | - | chr7.1:6289021-6289040 | None:intergenic | 25.0% |
| ! | TCTCTACAAAATAACTTCTA+CGG | + | chr7.1:6288363-6288382 | MS.gene007115:intron | 25.0% |
| ! | TGTTTGTATGTAACAATGTA+GGG | + | chr7.1:6288677-6288696 | MS.gene007115:intron | 25.0% |
| ! | TTCCTGAAATTACTCTAATA+AGG | + | chr7.1:6288009-6288028 | MS.gene007115:intron | 25.0% |
| ! | TTCCTTATTAGAGTAATTTC+AGG | - | chr7.1:6288014-6288033 | None:intergenic | 25.0% |
| ! | TTGAAAAGAAATGGAAGTAA+TGG | + | chr7.1:6287314-6287333 | MS.gene007115:intron | 25.0% |
| ! | TTGATTAATCTTAGTCCAAT+AGG | + | chr7.1:6288922-6288941 | MS.gene007115:intron | 25.0% |
| ! | TTTCAAGCAGAAATAATATG+AGG | + | chr7.1:6289115-6289134 | MS.gene007115:intron | 25.0% |
| !! | TAGTAATTGATATCGACTAT+TGG | + | chr7.1:6287381-6287400 | MS.gene007115:intron | 25.0% |
| !!! | ACTTCTGAAGATATTTTGAA+AGG | + | chr7.1:6289022-6289041 | MS.gene007115:intron | 25.0% |
| !!! | TCAGATGATTTTAAAATGTC+AGG | + | chr7.1:6288241-6288260 | MS.gene007115:intron | 25.0% |
| !!! | TTTTCTTTTTGTCTTGTTTC+TGG | + | chr7.1:6288885-6288904 | MS.gene007115:intron | 25.0% |
| !!! | TTTTTGCCATACATTTTTTG+AGG | + | chr7.1:6287666-6287685 | MS.gene007115:intron | 25.0% |
| AAAAGACACACTTGAATTTG+AGG | - | chr7.1:6288554-6288573 | None:intergenic | 30.0% | |
| AAATTACAAACCTGGAAAGA+TGG | - | chr7.1:6287222-6287241 | None:intergenic | 30.0% | |
| AACACACATATATCACAAGT+TGG | + | chr7.1:6287631-6287650 | MS.gene007115:intron | 30.0% | |
| AACTCTTCAAAGGAAACTAA+TGG | + | chr7.1:6289606-6289625 | MS.gene007115:CDS | 30.0% | |
| AAGTTCCAATATCAGATTCA+AGG | - | chr7.1:6289584-6289603 | None:intergenic | 30.0% | |
| AGTATAAGATCATTGAAGCT+TGG | - | chr7.1:6289220-6289239 | None:intergenic | 30.0% | |
| ATACTTTGTACAGATCTACA+AGG | - | chr7.1:6288489-6288508 | None:intergenic | 30.0% | |
| ATCATCAGATGTCATGTTAA+GGG | - | chr7.1:6288717-6288736 | None:intergenic | 30.0% | |
| ATGCATTTACTCAAGAAACA+AGG | + | chr7.1:6288945-6288964 | MS.gene007115:intron | 30.0% | |
| CAACTACCTCAAAAAATGTA+TGG | - | chr7.1:6287675-6287694 | None:intergenic | 30.0% | |
| CCAATGAAAAGGATTTGATT+TGG | - | chr7.1:6287103-6287122 | None:intergenic | 30.0% | |
| CCATAAAATTGATCTGCATA+AGG | - | chr7.1:6288512-6288531 | None:intergenic | 30.0% | |
| CTACAATCAAATTACAAACC+TGG | - | chr7.1:6287230-6287249 | None:intergenic | 30.0% | |
| CTATAAGTGTTTATCCAAAC+AGG | + | chr7.1:6287596-6287615 | MS.gene007115:intron | 30.0% | |
| GGAAGTAAAGTGCATAAATT+CGG | + | chr7.1:6289516-6289535 | MS.gene007115:CDS | 30.0% | |
| GTCAAGTGTTTGTACTTAAT+AGG | - | chr7.1:6287261-6287280 | None:intergenic | 30.0% | |
| GTTTATCTGAAAGAACATGA+TGG | + | chr7.1:6286969-6286988 | MS.gene007115:CDS | 30.0% | |
| TACTTTGTACAGATCTACAA+GGG | - | chr7.1:6288488-6288507 | None:intergenic | 30.0% | |
| TGCTTAGCATTCACATAAAT+AGG | - | chr7.1:6288743-6288762 | None:intergenic | 30.0% | |
| TGGAACTTTAAACTCTTCAA+AGG | + | chr7.1:6289596-6289615 | MS.gene007115:CDS | 30.0% | |
| TTATAGATTTAGGTCCTGTT+TGG | - | chr7.1:6287613-6287632 | None:intergenic | 30.0% | |
| TTCACTCCAATAATGCAAAA+TGG | + | chr7.1:6287975-6287994 | MS.gene007115:intron | 30.0% | |
| TTCCAATAATCGAACAAAAG+AGG | - | chr7.1:6288172-6288191 | None:intergenic | 30.0% | |
| TTCTCCAATATAAGTCAGTT+GGG | - | chr7.1:6287747-6287766 | None:intergenic | 30.0% | |
| TTTCTCCAATATAAGTCAGT+TGG | - | chr7.1:6287748-6287767 | None:intergenic | 30.0% | |
| ! | CCAAATCAAATCCTTTTCAT+TGG | + | chr7.1:6287100-6287119 | MS.gene007115:CDS | 30.0% |
| ! | CCTTATGCAGATCAATTTTA+TGG | + | chr7.1:6288509-6288528 | MS.gene007115:CDS | 30.0% |
| ! | TACTAAATCATCAGAGTACT+TGG | - | chr7.1:6288424-6288443 | None:intergenic | 30.0% |
| !!! | AGGGACCATTTTTTATTGTT+TGG | + | chr7.1:6288054-6288073 | MS.gene007115:intron | 30.0% |
| !!! | CATACATTTTTTGAGGTAGT+TGG | + | chr7.1:6287673-6287692 | MS.gene007115:intron | 30.0% |
| !!! | TTTAAGGGTTTTGAACTGTA+GGG | - | chr7.1:6287900-6287919 | None:intergenic | 30.0% |
| !!! | TTTTAAGGGTTTTGAACTGT+AGG | - | chr7.1:6287901-6287920 | None:intergenic | 30.0% |
| AACACAAAGAAATCTGCCAA+TGG | + | chr7.1:6289480-6289499 | MS.gene007115:CDS | 35.0% | |
| AATCACTTTACCATCTTTCC+AGG | + | chr7.1:6287209-6287228 | MS.gene007115:CDS | 35.0% | |
| ACAATGGAATCATTAGACGT+CGG | + | chr7.1:6288765-6288784 | MS.gene007115:CDS | 35.0% | |
| ACCTCTGATCCAGAAATATT+TGG | - | chr7.1:6289639-6289658 | None:intergenic | 35.0% | |
| ACTTCAATGAAGACAGAATC+TGG | - | chr7.1:6288865-6288884 | None:intergenic | 35.0% | |
| ACTTTGTACAGATCTACAAG+GGG | - | chr7.1:6288487-6288506 | None:intergenic | 35.0% | |
| AGACATGTTTCCCTTATGAT+TGG | + | chr7.1:6288454-6288473 | MS.gene007115:intron | 35.0% | |
| CATCATCAGATGTCATGTTA+AGG | - | chr7.1:6288718-6288737 | None:intergenic | 35.0% | |
| CCTCTGATCCAGAAATATTT+GGG | - | chr7.1:6289638-6289657 | None:intergenic | 35.0% | |
| CTTAACATGACATCTGATGA+TGG | + | chr7.1:6288716-6288735 | MS.gene007115:CDS | 35.0% | |
| CTTCAATGAAGACAGAATCT+GGG | - | chr7.1:6288864-6288883 | None:intergenic | 35.0% | |
| CTTCGTTGAGATTATTGAAG+AGG | + | chr7.1:6287783-6287802 | MS.gene007115:intron | 35.0% | |
| CTTGAGTAAATGCATCCTAT+TGG | - | chr7.1:6288940-6288959 | None:intergenic | 35.0% | |
| GAACTCCTTGAATCTGATAT+TGG | + | chr7.1:6289576-6289595 | MS.gene007115:CDS | 35.0% | |
| GGGAAACATACCAATCATAA+GGG | - | chr7.1:6288467-6288486 | None:intergenic | 35.0% | |
| GTAATTTCAGGAACTGAATG+AGG | - | chr7.1:6288002-6288021 | None:intergenic | 35.0% | |
| TCATCAGATGTCATGTTAAG+GGG | - | chr7.1:6288716-6288735 | None:intergenic | 35.0% | |
| TGGAAAGATGGTAAAGTGAT+TGG | - | chr7.1:6287210-6287229 | None:intergenic | 35.0% | |
| TTGTAGAGAAGTCTTACCAT+AGG | - | chr7.1:6288352-6288371 | None:intergenic | 35.0% | |
| TTTGGATCTCAATCCCTTTA+TGG | + | chr7.1:6287065-6287084 | MS.gene007115:CDS | 35.0% | |
| ! | GAATTGCACACAATTTTGTG+GGG | + | chr7.1:6286991-6287010 | MS.gene007115:CDS | 35.0% |
| ! | GGAATTGCACACAATTTTGT+GGG | + | chr7.1:6286990-6287009 | MS.gene007115:CDS | 35.0% |
| ! | TGAGGACCATTTTGCATTAT+TGG | - | chr7.1:6287984-6288003 | None:intergenic | 35.0% |
| ! | TGCCTCTTTTGTTCGATTAT+TGG | + | chr7.1:6288167-6288186 | MS.gene007115:intron | 35.0% |
| ! | TGGAATTGCACACAATTTTG+TGG | + | chr7.1:6286989-6287008 | MS.gene007115:CDS | 35.0% |
| !! | GAAAGTTGGTATGTCAAGTA+CGG | - | chr7.1:6288208-6288227 | None:intergenic | 35.0% |
| !!! | AGCGATTTTTGAGTCATCAA+AGG | - | chr7.1:6289302-6289321 | None:intergenic | 35.0% |
| AAGAAATCTGCCAATGGAGA+TGG | + | chr7.1:6289486-6289505 | MS.gene007115:CDS | 40.0% | |
| ACTGAACATGTGTTTGGGAA+AGG | + | chr7.1:6287179-6287198 | MS.gene007115:CDS | 40.0% | |
| AGAAGATCCAAGGTGATTGA+CGG | - | chr7.1:6289700-6289719 | None:intergenic | 40.0% | |
| AGAGGAACTGAACATGTGTT+TGG | + | chr7.1:6287173-6287192 | MS.gene007115:CDS | 40.0% | |
| AGTCAACAATTGCAGTTCAG+TGG | + | chr7.1:6289540-6289559 | MS.gene007115:CDS | 40.0% | |
| ATTGCTTAGTTGCAGCAAGT+TGG | - | chr7.1:6287148-6287167 | None:intergenic | 40.0% | |
| CCAATATAAGTCAGTTGGGA+GGG | - | chr7.1:6287743-6287762 | None:intergenic | 40.0% | |
| CTGAACATGTGTTTGGGAAA+GGG | + | chr7.1:6287180-6287199 | MS.gene007115:CDS | 40.0% | |
| GAGGAACTGAACATGTGTTT+GGG | + | chr7.1:6287174-6287193 | MS.gene007115:CDS | 40.0% | |
| GGGGAAACATACCAATCATA+AGG | - | chr7.1:6288468-6288487 | None:intergenic | 40.0% | |
| GTAGGGACTAAAAGTGAACA+TGG | - | chr7.1:6287883-6287902 | None:intergenic | 40.0% | |
| GTGAATGCTAAGCAGTACAA+TGG | + | chr7.1:6288749-6288768 | MS.gene007115:CDS | 40.0% | |
| TACAGCCATATCATTGCAGT+CGG | + | chr7.1:6288282-6288301 | MS.gene007115:CDS | 40.0% | |
| TATGGACTCATCTCAACCTA+TGG | + | chr7.1:6288527-6288546 | MS.gene007115:CDS | 40.0% | |
| TCCAATATAAGTCAGTTGGG+AGG | - | chr7.1:6287744-6287763 | None:intergenic | 40.0% | |
| TGCAATGATATGGCTGTATG+AGG | - | chr7.1:6288280-6288299 | None:intergenic | 40.0% | |
| TGTTATCATGCCGACCAAAT+GGG | + | chr7.1:6289758-6289777 | MS.gene007115:CDS | 40.0% | |
| TTTGTGACCAAGTACAGCTT+TGG | - | chr7.1:6288801-6288820 | None:intergenic | 40.0% | |
| TTTGTGGGGCAATTATCATC+TGG | + | chr7.1:6287005-6287024 | MS.gene007115:CDS | 40.0% | |
| ! | CACTTGAATTTGAGGTCCAT+AGG | - | chr7.1:6288546-6288565 | None:intergenic | 40.0% |
| ! | TCCAGTTTTACCATCTCCAT+TGG | - | chr7.1:6289499-6289518 | None:intergenic | 40.0% |
| !! | AGGTGACTAGTTTGTATTCG+AGG | + | chr7.1:6289655-6289674 | MS.gene007115:CDS | 40.0% |
| !! | CCCAAATATTTCTGGATCAG+AGG | + | chr7.1:6289635-6289654 | MS.gene007115:CDS | 40.0% |
| !! | GGTGACTAGTTTGTATTCGA+GGG | + | chr7.1:6289656-6289675 | MS.gene007115:CDS | 40.0% |
| !! | GTGACTAGTTTGTATTCGAG+GGG | + | chr7.1:6289657-6289676 | MS.gene007115:CDS | 40.0% |
| AATCCCAGCTCAAAGCGATT+CGG | - | chr7.1:6288322-6288341 | None:intergenic | 45.0% | |
| ACATAGACACACACGAACAC+TGG | + | chr7.1:6287284-6287303 | MS.gene007115:intron | 45.0% | |
| AGCTTTACCGTCAATCACCT+TGG | + | chr7.1:6289690-6289709 | MS.gene007115:CDS | 45.0% | |
| AGTTGGTCAACAGCAGACAT+AGG | - | chr7.1:6287131-6287150 | None:intergenic | 45.0% | |
| ATAATTCAGCTGCTGCACCA+TGG | + | chr7.1:6287033-6287052 | MS.gene007115:CDS | 45.0% | |
| CAATCCCTTTATGGAGAGTC+TGG | + | chr7.1:6287074-6287093 | MS.gene007115:CDS | 45.0% | |
| CATAGGTGGCTCCAATGAAA+AGG | - | chr7.1:6287114-6287133 | None:intergenic | 45.0% | |
| GATCCAAAACTACTCCACCA+TGG | - | chr7.1:6287053-6287072 | None:intergenic | 45.0% | |
| GCAACTAAGCAATCTGCTAG+AGG | + | chr7.1:6287155-6287174 | MS.gene007115:CDS | 45.0% | |
| GCCAATGGAGATGGTAAAAC+TGG | + | chr7.1:6289495-6289514 | MS.gene007115:CDS | 45.0% | |
| GGAAGCAGCCCAAATATTTC+TGG | + | chr7.1:6289627-6289646 | MS.gene007115:CDS | 45.0% | |
| GTGTTATCATGCCGACCAAA+TGG | + | chr7.1:6289757-6289776 | MS.gene007115:CDS | 45.0% | |
| TAGAGTGGACAGAAGATCCA+AGG | - | chr7.1:6289710-6289729 | None:intergenic | 45.0% | |
| TCTATGGCAGACATGATCGA+TGG | + | chr7.1:6289726-6289745 | MS.gene007115:CDS | 45.0% | |
| TGGATCTTCTGTCCACTCTA+TGG | + | chr7.1:6289710-6289729 | MS.gene007115:CDS | 45.0% | |
| ! | AATCGCTTTGAGCTGGGATT+TGG | + | chr7.1:6288322-6288341 | MS.gene007115:CDS | 45.0% |
| ! | CCCTCCCAACTGACTTATAT+TGG | + | chr7.1:6287740-6287759 | MS.gene007115:intron | 45.0% |
| ! | GAATCTGGGACTATCATGCA+TGG | - | chr7.1:6288850-6288869 | None:intergenic | 45.0% |
| !!! | AAATAATAAAATACTTTTTA+AGG | - | chr7.1:6287916-6287935 | None:intergenic | 5.0% |
| !!! | AATAATAAAATACTTTTTAA+GGG | - | chr7.1:6287915-6287934 | None:intergenic | 5.0% |
| AAACGACCACCACATCCTCT+CGG | - | chr7.1:6289456-6289475 | None:intergenic | 50.0% | |
| ACCAAATGGGTAACAGCAGC+TGG | + | chr7.1:6289771-6289790 | MS.gene007115:CDS | 50.0% | |
| ATCCCAGCTCAAAGCGATTC+GGG | - | chr7.1:6288321-6288340 | None:intergenic | 50.0% | |
| ATGGCAGACATGATCGATGG+TGG | + | chr7.1:6289729-6289748 | MS.gene007115:CDS | 50.0% | |
| CGATCATGTCTGCCATAGAG+TGG | - | chr7.1:6289725-6289744 | None:intergenic | 50.0% | |
| GCCACCAGACTCTCCATAAA+GGG | - | chr7.1:6287081-6287100 | None:intergenic | 50.0% | |
| GCTGCTGTTACCCATTTGGT+CGG | - | chr7.1:6289771-6289790 | None:intergenic | 50.0% | |
| TCCCTTTATGGAGAGTCTGG+TGG | + | chr7.1:6287077-6287096 | MS.gene007115:CDS | 50.0% | |
| TGGCAGACATGATCGATGGT+GGG | + | chr7.1:6289730-6289749 | MS.gene007115:CDS | 50.0% | |
| TGGTCAACAGCAGACATAGG+TGG | - | chr7.1:6287128-6287147 | None:intergenic | 50.0% | |
| ! | CAAAGCGATTCGGGGTATCA+GGG | - | chr7.1:6288312-6288331 | None:intergenic | 50.0% |
| ! | GACTGCCGACTGCAATGATA+TGG | - | chr7.1:6288290-6288309 | None:intergenic | 50.0% |
| ! | GCTGGGATTTGGTCAACCTA+TGG | + | chr7.1:6288333-6288352 | MS.gene007115:CDS | 50.0% |
| ! | TCAAAGCGATTCGGGGTATC+AGG | - | chr7.1:6288313-6288332 | None:intergenic | 50.0% |
| !! | GCACCATGGTGGAGTAGTTT+TGG | + | chr7.1:6287047-6287066 | MS.gene007115:CDS | 50.0% |
| ATGGCGTGACTCGTGCATGT+AGG | - | chr7.1:6289415-6289434 | None:intergenic | 55.0% | |
| ATTCAGCTGCTGCACCATGG+TGG | + | chr7.1:6287036-6287055 | MS.gene007115:CDS | 55.0% | |
| CACGCCATCTCCATGCAATG+CGG | + | chr7.1:6289427-6289446 | MS.gene007115:CDS | 55.0% | |
| GCCAGCTGCTGTTACCCATT+TGG | - | chr7.1:6289775-6289794 | None:intergenic | 55.0% | |
| GGCCACCAGACTCTCCATAA+AGG | - | chr7.1:6287082-6287101 | None:intergenic | 55.0% | |
| TCCCAGCTCAAAGCGATTCG+GGG | - | chr7.1:6288320-6288339 | None:intergenic | 55.0% | |
| TGGCGTGACTCGTGCATGTA+GGG | - | chr7.1:6289414-6289433 | None:intergenic | 55.0% | |
| ! | ACCAAGTACAGCTTTGGCGC+GGG | - | chr7.1:6288795-6288814 | None:intergenic | 55.0% |
| ! | ACCCCGAATCGCTTTGAGCT+GGG | + | chr7.1:6288316-6288335 | MS.gene007115:CDS | 55.0% |
| ! | GACCAAGTACAGCTTTGGCG+CGG | - | chr7.1:6288796-6288815 | None:intergenic | 55.0% |
| ! | TACCCCGAATCGCTTTGAGC+TGG | + | chr7.1:6288315-6288334 | MS.gene007115:CDS | 55.0% |
| GTCGCCGCATTGCATGGAGA+TGG | - | chr7.1:6289434-6289453 | None:intergenic | 60.0% | |
| TCCCGCGCCAAAGCTGTACT+TGG | + | chr7.1:6288791-6288810 | MS.gene007115:CDS | 60.0% | |
| !! | GACATGATCGATGGTGGGCG+TGG | + | chr7.1:6289735-6289754 | MS.gene007115:CDS | 60.0% |
| ATGCGGCGACCGAGAGGATG+TGG | + | chr7.1:6289444-6289463 | MS.gene007115:CDS | 65.0% | |
| CATGCAATGCGGCGACCGAG+AGG | + | chr7.1:6289438-6289457 | MS.gene007115:CDS | 65.0% | |
| CTCTCGGTCGCCGCATTGCA+TGG | - | chr7.1:6289440-6289459 | None:intergenic | 65.0% | |
| CGGCGACCGAGAGGATGTGG+TGG | + | chr7.1:6289447-6289466 | MS.gene007115:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 6286954 | 6289818 | 6286954 | ID=MS.gene007115 |
| chr7.1 | mRNA | 6286954 | 6289818 | 6286954 | ID=MS.gene007115.t1;Parent=MS.gene007115 |
| chr7.1 | exon | 6286954 | 6287230 | 6286954 | ID=MS.gene007115.t1.exon1;Parent=MS.gene007115.t1 |
| chr7.1 | CDS | 6286954 | 6287230 | 6286954 | ID=cds.MS.gene007115.t1;Parent=MS.gene007115.t1 |
| chr7.1 | exon | 6288245 | 6288354 | 6288245 | ID=MS.gene007115.t1.exon2;Parent=MS.gene007115.t1 |
| chr7.1 | CDS | 6288245 | 6288354 | 6288245 | ID=cds.MS.gene007115.t1;Parent=MS.gene007115.t1 |
| chr7.1 | exon | 6288494 | 6288562 | 6288494 | ID=MS.gene007115.t1.exon3;Parent=MS.gene007115.t1 |
| chr7.1 | CDS | 6288494 | 6288562 | 6288494 | ID=cds.MS.gene007115.t1;Parent=MS.gene007115.t1 |
| chr7.1 | exon | 6288698 | 6288838 | 6288698 | ID=MS.gene007115.t1.exon4;Parent=MS.gene007115.t1 |
| chr7.1 | CDS | 6288698 | 6288838 | 6288698 | ID=cds.MS.gene007115.t1;Parent=MS.gene007115.t1 |
| chr7.1 | exon | 6289411 | 6289818 | 6289411 | ID=MS.gene007115.t1.exon5;Parent=MS.gene007115.t1 |
| chr7.1 | CDS | 6289411 | 6289818 | 6289411 | ID=cds.MS.gene007115.t1;Parent=MS.gene007115.t1 |
| Gene Sequence |
| Protein sequence |
