AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46438

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46438.t1 MTR_1g056530 97.289 332 9 0 1 332 1 332 0.0 676
MS.gene46438.t1 MTR_7g106450 70.517 329 88 6 1 324 1 325 2.48e-162 456
MS.gene46438.t1 MTR_8g037270 50.400 125 49 4 128 241 109 231 7.45e-30 115
MS.gene46438.t1 MTR_2g041090 49.624 133 49 4 116 231 14 145 1.95e-29 113
MS.gene46438.t1 MTR_2g030170 50.467 107 51 1 133 237 80 186 1.86e-28 109
MS.gene46438.t1 MTR_2g030170 56.627 83 36 0 155 237 137 219 3.46e-27 107
MS.gene46438.t1 MTR_3g061510 50.000 116 44 4 127 231 125 237 6.16e-27 108
MS.gene46438.t1 MTR_3g061510 50.000 116 44 4 127 231 145 257 8.64e-27 108
MS.gene46438.t1 MTR_8g019540 47.414 116 46 4 120 222 110 223 7.25e-26 105
MS.gene46438.t1 MTR_2g099490 44.853 136 66 4 134 260 134 269 2.88e-25 103
MS.gene46438.t1 MTR_2g099490 37.430 179 98 5 95 260 108 285 5.57e-25 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46438.t1 AT5G06510 44.518 301 109 13 29 325 13 259 1.62e-61 197
MS.gene46438.t1 AT5G06510 44.518 301 109 13 29 325 13 259 1.62e-61 197
MS.gene46438.t1 AT5G06510 44.518 301 109 13 29 325 13 259 1.62e-61 197
MS.gene46438.t1 AT5G06510 44.518 301 109 13 29 325 13 259 1.62e-61 197
MS.gene46438.t1 AT3G05690 44.237 321 110 17 27 326 12 284 1.18e-56 186
MS.gene46438.t1 AT3G05690 44.237 321 110 17 27 326 49 321 8.21e-56 185
MS.gene46438.t1 AT5G06510 48.511 235 76 9 93 325 19 210 9.75e-56 181
MS.gene46438.t1 AT5G06510 51.269 197 58 8 131 325 4 164 6.53e-49 162
MS.gene46438.t1 AT5G06510 51.269 197 58 8 131 325 4 164 6.53e-49 162
MS.gene46438.t1 AT1G30500 50.420 119 53 1 127 239 53 171 3.27e-32 119
MS.gene46438.t1 AT2G34720 40.462 173 86 5 97 256 19 187 3.37e-32 119
MS.gene46438.t1 AT1G30500 49.593 123 52 1 127 239 53 175 1.77e-31 117
MS.gene46438.t1 AT2G34720 46.377 138 58 4 132 256 18 152 2.58e-30 113
MS.gene46438.t1 AT2G34720 46.377 138 58 4 132 256 18 152 2.58e-30 113
MS.gene46438.t1 AT1G72830 42.515 167 74 6 132 284 135 293 1.00e-29 116
MS.gene46438.t1 AT5G12840 34.266 286 150 12 1 266 1 268 4.60e-29 113
MS.gene46438.t1 AT5G12840 34.266 286 150 12 1 266 1 268 4.60e-29 113
MS.gene46438.t1 AT5G12840 45.033 151 65 5 127 266 126 269 2.26e-28 111
MS.gene46438.t1 AT5G12840 45.033 151 65 5 127 266 126 269 2.26e-28 111
MS.gene46438.t1 AT5G12840 45.033 151 65 5 127 266 126 269 2.26e-28 111
MS.gene46438.t1 AT1G72830 42.262 168 74 7 132 284 135 294 4.14e-28 112
MS.gene46438.t1 AT1G17590 59.259 81 31 2 143 223 153 231 6.02e-26 105
MS.gene46438.t1 AT1G17590 59.259 81 31 2 143 223 153 231 6.02e-26 105
MS.gene46438.t1 AT1G17590 59.259 81 31 2 143 223 153 231 6.02e-26 105
MS.gene46438.t1 AT1G17590 59.259 81 31 2 143 223 153 231 6.02e-26 105
MS.gene46438.t1 AT1G54160 64.000 75 26 1 149 223 164 237 4.86e-25 103
MS.gene46438.t1 AT3G20910 48.760 121 41 5 133 239 126 239 1.46e-24 101
MS.gene46438.t1 AT3G14020 51.961 102 40 3 132 229 140 236 1.10e-23 99.4
MS.gene46438.t1 AT3G14020 51.961 102 40 3 132 229 140 236 1.10e-23 99.4
MS.gene46438.t1 AT1G72830 38.462 156 71 5 132 284 135 268 2.21e-21 93.2

Find 78 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGATCTCAACCTGTTTA+TGG 0.217575 1.2:+44470509 MS.gene46438:CDS
TACGGGCTCTTCTCGACTTA+TGG 0.224539 1.2:+44471110 MS.gene46438:CDS
AACACAAAAGTTTCTGCTAA+TGG 0.270945 1.2:+44471968 MS.gene46438:CDS
CGGATCTACTGTCCACTCTT+TGG 0.272014 1.2:+44472201 MS.gene46438:CDS
GTTGAACAATTGTTTGATAA+AGG 0.289283 1.2:+44470623 MS.gene46438:CDS
TGACGCGATTCGTGCATATA+TGG 0.329752 1.2:-44471899 None:intergenic
CTGTGCAAAATATCCTTATA+TGG 0.336858 1.2:+44471079 MS.gene46438:CDS
TTGGAAAGCTCCAATGAAAA+AGG 0.340104 1.2:-44470557 None:intergenic
ACCTCTGACCCCGAGACATT+TGG 0.360492 1.2:-44472127 None:intergenic
CCGTAAAATTGATCCATATA+AGG 0.372097 1.2:-44471092 None:intergenic
AACCAATTCACCATCTTTCC+AGG 0.379219 1.2:+44470653 MS.gene46438:CDS
TCATGTTCTTTAAGATAAAC+AGG 0.380584 1.2:-44470419 None:intergenic
GGATCTACTGTCCACTCTTT+GGG 0.389114 1.2:+44472202 MS.gene46438:CDS
TTGGGAGACATGATCGATAC+TGG 0.406979 1.2:+44472220 MS.gene46438:CDS
GTATCGTCATGCCAACAAAA+TGG 0.414096 1.2:+44472248 MS.gene46438:CDS
AACTTTACTGTCAATCATAT+CGG 0.418865 1.2:+44472181 MS.gene46438:CDS
TACCTGGAAAGATGGTGAAT+TGG 0.421188 1.2:-44470655 None:intergenic
AGCAATTTGATCTATGTAGT+TGG 0.421523 1.2:-44470576 None:intergenic
TGCTTAGCATTCACGTATGT+TGG 0.430698 1.2:-44471688 None:intergenic
CAAGACTCTCCTCCATAAAC+AGG 0.453464 1.2:-44470521 None:intergenic
TTTATTCTGAAGCACAGCTT+TGG 0.466795 1.2:-44471746 None:intergenic
GATAAGGTTGCTTGATGATT+CGG 0.479300 1.2:-44470891 None:intergenic
GGAGGCAGTCCAAATGTCTC+GGG 0.483878 1.2:+44472118 MS.gene46438:CDS
ACAAAATGGTTTGCAGCAGC+TGG 0.492247 1.2:+44472262 MS.gene46438:CDS
AAACGACCACCGCATCCTCT+TGG 0.498137 1.2:-44471941 None:intergenic
TAAGAAGATTTACCATAGGC+TGG 0.500852 1.2:-44470968 None:intergenic
AAAGTTTCTGCTAATGGAAA+CGG 0.509349 1.2:+44471974 MS.gene46438:CDS
CGGAGGCAGTCCAAATGTCT+CGG 0.512481 1.2:+44472117 MS.gene46438:CDS
TGGAACTTTAAATTCGTCAA+AGG 0.512980 1.2:+44472087 MS.gene46438:CDS
AGCAGCTGGTAGACAGCTGC+TGG 0.514662 1.2:+44472276 MS.gene46438:CDS
CCATGGTGGAGTAATGCCTA+TGG 0.516782 1.2:+44470491 MS.gene46438:CDS
CCTAGCTCAAAACGATTAAG+TGG 0.518018 1.2:-44470939 None:intergenic
AATTCGTCAAAGGAGACAAA+CGG 0.518779 1.2:+44472097 MS.gene46438:CDS
TTCGGAACTCTGAGAACCAC+TGG 0.518971 1.2:-44472047 None:intergenic
CCGAGTAAGAACTTAGTTCG+AGG 0.522823 1.2:+44470599 MS.gene46438:CDS
GCTAATGGAAACGGTAAAAG+CGG 0.528506 1.2:+44471983 MS.gene46438:CDS
GGAAATGTCCACAATTCTGT+TGG 0.536104 1.2:+44470443 MS.gene46438:CDS
GACTTATGGACCTCAAATCT+CGG 0.538137 1.2:+44471124 MS.gene46438:CDS
CCTCGAACTAAGTTCTTACT+CGG 0.539423 1.2:-44470599 None:intergenic
ATAACAAGTACCTGGAAAGA+TGG 0.540599 1.2:-44470663 None:intergenic
CTCAAAACGATTAAGTGGCT+CGG 0.547492 1.2:-44470934 None:intergenic
TAAAGACAAACCGAGATTTG+AGG 0.547890 1.2:-44471134 None:intergenic
GGCCTACAGCTGCAGTCCAG+TGG 0.549836 1.2:+44472031 MS.gene46438:CDS
GCTAGGGTTTAACCAGCCTA+TGG 0.550177 1.2:+44470956 MS.gene46438:CDS
ATAAACAGGTTGAGATCCAT+AGG 0.553524 1.2:-44470507 None:intergenic
AACCTCAGATTGTAAGACTT+CGG 0.557052 1.2:-44472065 None:intergenic
TTCCGAAGTCTTACAATCTG+AGG 0.557924 1.2:+44472063 MS.gene46438:CDS
AAATGATGATTGCAGTGATA+AGG 0.560313 1.2:-44470907 None:intergenic
TCCAAATGTCTCGGGGTCAG+AGG 0.561807 1.2:+44472126 MS.gene46438:CDS
AAAACTGTCCAACAGAATTG+TGG 0.562402 1.2:-44470451 None:intergenic
GTTTATCTTAAAGAACATGA+AGG 0.564171 1.2:+44470422 MS.gene46438:CDS
CTAATGGAAACGGTAAAAGC+GGG 0.566129 1.2:+44471984 MS.gene46438:CDS
CATCTGTGACTTCAGCACCA+TGG 0.577095 1.2:+44470474 MS.gene46438:CDS
GAAGTCTTACAATCTGAGGT+TGG 0.582591 1.2:+44472067 MS.gene46438:CDS
TTGATGATTCGGTGTATCAA+CGG 0.586695 1.2:-44470880 None:intergenic
ATGCGTAGACCAAGAGGATG+CGG 0.604666 1.2:+44471932 MS.gene46438:CDS
CGATCATGTCTCCCAAAGAG+TGG 0.606030 1.2:-44472213 None:intergenic
GTTTATGGAGGAGAGTCTTG+TGG 0.624514 1.2:+44470524 MS.gene46438:CDS
TCGTCAGATGTCATGCTAAG+CGG 0.627347 1.2:-44471661 None:intergenic
GGTGACTAGCATGTACACAC+AGG 0.643441 1.2:+44472147 MS.gene46438:CDS
GGATCTCAACCTGTTTATGG+AGG 0.650456 1.2:+44470512 MS.gene46438:CDS
TAAACTGATAAAGCGTAACA+AGG 0.655532 1.2:+44471765 MS.gene46438:CDS
GACATGATCGATACTGGACA+CGG 0.660565 1.2:+44472226 MS.gene46438:CDS
CATGCAATGCGTAGACCAAG+AGG 0.668981 1.2:+44471926 MS.gene46438:CDS
CGTAGACCAAGAGGATGCGG+TGG 0.670871 1.2:+44471935 MS.gene46438:CDS
GTGAATGCTAAGCAATACCA+TGG 0.675463 1.2:+44471697 MS.gene46438:CDS
CTGTGACTTCAGCACCATGG+TGG 0.675777 1.2:+44470477 MS.gene46438:CDS
AACCACTGGACTGCAGCTGT+AGG 0.688049 1.2:-44472033 None:intergenic
ACCATGGTATCATCAGACGC+AGG 0.688525 1.2:+44471713 MS.gene46438:CDS
AGTGAAGAGAACATAAACAC+TGG 0.692663 1.2:+44472007 MS.gene46438:CDS
GCCTGCGTCTGATGATACCA+TGG 0.693395 1.2:-44471714 None:intergenic
CCATAGGCATTACTCCACCA+TGG 0.694421 1.2:-44470491 None:intergenic
GTGACTAGCATGTACACACA+GGG 0.698331 1.2:+44472148 MS.gene46438:CDS
GAGGCAGTCCAAATGTCTCG+GGG 0.702648 1.2:+44472119 MS.gene46438:CDS
GAAGAGAACATAAACACTGG+TGG 0.703232 1.2:+44472010 MS.gene46438:CDS
ACTAGCATGTACACACAGGG+AGG 0.761185 1.2:+44472151 MS.gene46438:CDS
CTTAGCATGACATCTGACGA+CGG 0.765545 1.2:+44471664 MS.gene46438:CDS
TCGTCAAAGGAGACAAACGG+AGG 0.770276 1.2:+44472100 MS.gene46438:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAGTAAAGAAATTA+TGG + chr1.2:44471396-44471415 MS.gene46438:intron 10.0%
!! GTATCTATATTTAATAAATT+AGG + chr1.2:44471624-44471643 MS.gene46438:intron 10.0%
!!! CATCATATAATTCAATTTTA+AGG - chr1.2:44471508-44471527 None:intergenic 15.0%
!! AAATACTAAAACATGATCAA+AGG - chr1.2:44471005-44471024 None:intergenic 20.0%
!! AAGTAAAGAAATTATGGTTA+AGG + chr1.2:44471402-44471421 MS.gene46438:intron 20.0%
!! AATACTAAAACATGATCAAA+GGG - chr1.2:44471004-44471023 None:intergenic 20.0%
!! AATGTCTATAAATACTTGAA+TGG + chr1.2:44471193-44471212 MS.gene46438:intron 20.0%
!! ATAGGTATAAAAAGAGTAAA+AGG - chr1.2:44471853-44471872 None:intergenic 20.0%
!! ATGTCTATAAATACTTGAAT+GGG + chr1.2:44471194-44471213 MS.gene46438:intron 20.0%
!! CAAATACAAAACCTTAATAT+AGG - chr1.2:44471871-44471890 None:intergenic 20.0%
!! TCTAAATCTTTCAAATGTAA+TGG + chr1.2:44471301-44471320 MS.gene46438:intron 20.0%
!!! ATTTGTTGTAAATGAGTTTT+AGG + chr1.2:44471337-44471356 MS.gene46438:intron 20.0%
!!! CTCTTTTTATACCTATATTA+AGG + chr1.2:44471857-44471876 MS.gene46438:intron 20.0%
!!! TGAAATGATTTTTGTTAAGT+TGG + chr1.2:44470708-44470727 MS.gene46438:intron 20.0%
! AACACAAATGAGAAGAAAAT+TGG + chr1.2:44471464-44471483 MS.gene46438:intron 25.0%
! AACTTTACTGTCAATCATAT+CGG + chr1.2:44472181-44472200 MS.gene46438:CDS 25.0%
! AATTATGGTTAAGGATGTAA+AGG + chr1.2:44471411-44471430 MS.gene46438:intron 25.0%
! ATTATGGTTAAGGATGTAAA+GGG + chr1.2:44471412-44471431 MS.gene46438:intron 25.0%
! GTTGAACAATTGTTTGATAA+AGG + chr1.2:44470623-44470642 MS.gene46438:CDS 25.0%
! GTTTATCTTAAAGAACATGA+AGG + chr1.2:44470422-44470441 MS.gene46438:CDS 25.0%
! TGTAGATGAAAATGTTTGAA+TGG - chr1.2:44470844-44470863 None:intergenic 25.0%
! TGTCTATAAATACTTGAATG+GGG + chr1.2:44471195-44471214 MS.gene46438:intron 25.0%
! TTGTTAAGAAGATTTACCAT+AGG - chr1.2:44470975-44470994 None:intergenic 25.0%
!! CCTTATATGGATCAATTTTA+CGG + chr1.2:44471092-44471111 MS.gene46438:CDS 25.0%
!! CTTATATGGATCAATTTTAC+GGG + chr1.2:44471093-44471112 MS.gene46438:CDS 25.0%
!!! CTTGTTATTCGATATAATTC+TGG + chr1.2:44470678-44470697 MS.gene46438:intron 25.0%
!!! TCATGTTCTTTAAGATAAAC+AGG - chr1.2:44470422-44470441 None:intergenic 25.0%
AAAGTTTCTGCTAATGGAAA+CGG + chr1.2:44471974-44471993 MS.gene46438:CDS 30.0%
AAATGATGATTGCAGTGATA+AGG - chr1.2:44470910-44470929 None:intergenic 30.0%
AACACAAAAGTTTCTGCTAA+TGG + chr1.2:44471968-44471987 MS.gene46438:CDS 30.0%
AATGTAGCACGATTTATGTT+CGG + chr1.2:44470751-44470770 MS.gene46438:intron 30.0%
AGCAATTTGATCTATGTAGT+TGG - chr1.2:44470579-44470598 None:intergenic 30.0%
ATGAAAATGTTTGAATGGCT+AGG - chr1.2:44470839-44470858 None:intergenic 30.0%
CCAATGAAAAAGGTTTCATT+TGG - chr1.2:44470550-44470569 None:intergenic 30.0%
CCGTAAAATTGATCCATATA+AGG - chr1.2:44471095-44471114 None:intergenic 30.0%
CTGTGCAAAATATCCTTATA+TGG + chr1.2:44471079-44471098 MS.gene46438:CDS 30.0%
GATAGTAGTAAACAGATTTC+TGG - chr1.2:44471268-44471287 None:intergenic 30.0%
TAAACTGATAAAGCGTAACA+AGG + chr1.2:44471765-44471784 MS.gene46438:CDS 30.0%
TATATCGAATAACAAGTACC+TGG - chr1.2:44470674-44470693 None:intergenic 30.0%
TGGAACTTTAAATTCGTCAA+AGG + chr1.2:44472087-44472106 MS.gene46438:CDS 30.0%
! AGTTTTCAAACATTGTTGTG+AGG - chr1.2:44471811-44471830 None:intergenic 30.0%
! GTTTTCAAACATTGTTGTGA+GGG - chr1.2:44471810-44471829 None:intergenic 30.0%
! TGAAGTTTTTGCATGTATTC+AGG + chr1.2:44471538-44471557 MS.gene46438:intron 30.0%
!! CCAAATGAAACCTTTTTCAT+TGG + chr1.2:44470547-44470566 MS.gene46438:CDS 30.0%
!!! GATTTTTGTTAAGTTGGTTC+TGG + chr1.2:44470714-44470733 MS.gene46438:intron 30.0%
AAAACTGTCCAACAGAATTG+TGG - chr1.2:44470454-44470473 None:intergenic 35.0%
AACCTCAGATTGTAAGACTT+CGG - chr1.2:44472068-44472087 None:intergenic 35.0%
AATTCGTCAAAGGAGACAAA+CGG + chr1.2:44472097-44472116 MS.gene46438:CDS 35.0%
AGTGAAGAGAACATAAACAC+TGG + chr1.2:44472007-44472026 MS.gene46438:CDS 35.0%
ATAACAAGTACCTGGAAAGA+TGG - chr1.2:44470666-44470685 None:intergenic 35.0%
ATCTGCAGCAGATAAACAAA+TGG - chr1.2:44471579-44471598 None:intergenic 35.0%
ATGTTTGAATGGCTAGGTAT+AGG - chr1.2:44470833-44470852 None:intergenic 35.0%
TAAAGACAAACCGAGATTTG+AGG - chr1.2:44471137-44471156 None:intergenic 35.0%
TAAGAAGATTTACCATAGGC+TGG - chr1.2:44470971-44470990 None:intergenic 35.0%
TATGGATCTCAACCTGTTTA+TGG + chr1.2:44470509-44470528 MS.gene46438:CDS 35.0%
TTGGAAAGCTCCAATGAAAA+AGG - chr1.2:44470560-44470579 None:intergenic 35.0%
! ATAAACAGGTTGAGATCCAT+AGG - chr1.2:44470510-44470529 None:intergenic 35.0%
! GATAAGGTTGCTTGATGATT+CGG - chr1.2:44470894-44470913 None:intergenic 35.0%
! TATTTTGCACAGATCTAGCA+TGG - chr1.2:44471071-44471090 None:intergenic 35.0%
!! CACTTAATCGTTTTGAGCTA+GGG + chr1.2:44470940-44470959 MS.gene46438:CDS 35.0%
!! TTGATGATTCGGTGTATCAA+CGG - chr1.2:44470883-44470902 None:intergenic 35.0%
!! TTTATTCTGAAGCACAGCTT+TGG - chr1.2:44471749-44471768 None:intergenic 35.0%
AACCAATTCACCATCTTTCC+AGG + chr1.2:44470653-44470672 MS.gene46438:CDS 40.0%
CCTAGCTCAAAACGATTAAG+TGG - chr1.2:44470942-44470961 None:intergenic 40.0%
CCTCGAACTAAGTTCTTACT+CGG - chr1.2:44470602-44470621 None:intergenic 40.0%
CTAATGGAAACGGTAAAAGC+GGG + chr1.2:44471984-44472003 MS.gene46438:CDS 40.0%
CTCAAAACGATTAAGTGGCT+CGG - chr1.2:44470937-44470956 None:intergenic 40.0%
GAAGAGAACATAAACACTGG+TGG + chr1.2:44472010-44472029 MS.gene46438:CDS 40.0%
GACTTATGGACCTCAAATCT+CGG + chr1.2:44471124-44471143 MS.gene46438:CDS 40.0%
GCTAATGGAAACGGTAAAAG+CGG + chr1.2:44471983-44472002 MS.gene46438:CDS 40.0%
GGAAATGTCCACAATTCTGT+TGG + chr1.2:44470443-44470462 MS.gene46438:CDS 40.0%
GTATCGTCATGCCAACAAAA+TGG + chr1.2:44472248-44472267 MS.gene46438:CDS 40.0%
GTGAATGCTAAGCAATACCA+TGG + chr1.2:44471697-44471716 MS.gene46438:CDS 40.0%
TACCTGGAAAGATGGTGAAT+TGG - chr1.2:44470658-44470677 None:intergenic 40.0%
TGCTTAGCATTCACGTATGT+TGG - chr1.2:44471691-44471710 None:intergenic 40.0%
TTCCGAAGTCTTACAATCTG+AGG + chr1.2:44472063-44472082 MS.gene46438:CDS 40.0%
! ATCTCGGTTTGTCTTTAGCT+CGG + chr1.2:44471140-44471159 MS.gene46438:intron 40.0%
! GAAGTCTTACAATCTGAGGT+TGG + chr1.2:44472067-44472086 MS.gene46438:CDS 40.0%
!! CCACTTAATCGTTTTGAGCT+AGG + chr1.2:44470939-44470958 MS.gene46438:CDS 40.0%
CAAGACTCTCCTCCATAAAC+AGG - chr1.2:44470524-44470543 None:intergenic 45.0%
CCGAGTAAGAACTTAGTTCG+AGG + chr1.2:44470599-44470618 MS.gene46438:CDS 45.0%
CTTAGCATGACATCTGACGA+CGG + chr1.2:44471664-44471683 MS.gene46438:CDS 45.0%
GACATGATCGATACTGGACA+CGG + chr1.2:44472226-44472245 MS.gene46438:CDS 45.0%
GGATCTACTGTCCACTCTTT+GGG + chr1.2:44472202-44472221 MS.gene46438:CDS 45.0%
GGATCTCAACCTGTTTATGG+AGG + chr1.2:44470512-44470531 MS.gene46438:CDS 45.0%
GTGACTAGCATGTACACACA+GGG + chr1.2:44472148-44472167 MS.gene46438:CDS 45.0%
GTTTATGGAGGAGAGTCTTG+TGG + chr1.2:44470524-44470543 MS.gene46438:CDS 45.0%
TCGTCAGATGTCATGCTAAG+CGG - chr1.2:44471664-44471683 None:intergenic 45.0%
TGACGCGATTCGTGCATATA+TGG - chr1.2:44471902-44471921 None:intergenic 45.0%
TGCACAGATCTAGCATGGAA+AGG - chr1.2:44471066-44471085 None:intergenic 45.0%
TTGGGAGACATGATCGATAC+TGG + chr1.2:44472220-44472239 MS.gene46438:CDS 45.0%
! ACAAAATGGTTTGCAGCAGC+TGG + chr1.2:44472262-44472281 MS.gene46438:CDS 45.0%
! GCTGCTGCAAACCATTTTGT+TGG - chr1.2:44472262-44472281 None:intergenic 45.0%
!! AAGTTGGTTCTGGCTAAACG+TGG + chr1.2:44470724-44470743 MS.gene46438:intron 45.0%
!! AGTTGGTTCTGGCTAAACGT+GGG + chr1.2:44470725-44470744 MS.gene46438:intron 45.0%
!! TATCTATATTTAATAAATTA+GGG + chr1.2:44471625-44471644 MS.gene46438:intron 5.0%
ACCATGGTATCATCAGACGC+AGG + chr1.2:44471713-44471732 MS.gene46438:CDS 50.0%
ACTAGCATGTACACACAGGG+AGG + chr1.2:44472151-44472170 MS.gene46438:CDS 50.0%
ATGCGTAGACCAAGAGGATG+CGG + chr1.2:44471932-44471951 MS.gene46438:CDS 50.0%
CATCTGTGACTTCAGCACCA+TGG + chr1.2:44470474-44470493 MS.gene46438:CDS 50.0%
CATGCAATGCGTAGACCAAG+AGG + chr1.2:44471926-44471945 MS.gene46438:CDS 50.0%
CCATAGGCATTACTCCACCA+TGG - chr1.2:44470494-44470513 None:intergenic 50.0%
CGATCATGTCTCCCAAAGAG+TGG - chr1.2:44472216-44472235 None:intergenic 50.0%
CGGATCTACTGTCCACTCTT+TGG + chr1.2:44472201-44472220 MS.gene46438:CDS 50.0%
GCTAGGGTTTAACCAGCCTA+TGG + chr1.2:44470956-44470975 MS.gene46438:CDS 50.0%
GGTGACTAGCATGTACACAC+AGG + chr1.2:44472147-44472166 MS.gene46438:CDS 50.0%
TACGGGCTCTTCTCGACTTA+TGG + chr1.2:44471110-44471129 MS.gene46438:CDS 50.0%
TCGTCAAAGGAGACAAACGG+AGG + chr1.2:44472100-44472119 MS.gene46438:CDS 50.0%
! CCATGGTGGAGTAATGCCTA+TGG + chr1.2:44470491-44470510 MS.gene46438:CDS 50.0%
! TTCGGAACTCTGAGAACCAC+TGG - chr1.2:44472050-44472069 None:intergenic 50.0%
AAACGACCACCGCATCCTCT+TGG - chr1.2:44471944-44471963 None:intergenic 55.0%
AACCACTGGACTGCAGCTGT+AGG - chr1.2:44472036-44472055 None:intergenic 55.0%
ACCTCTGACCCCGAGACATT+TGG - chr1.2:44472130-44472149 None:intergenic 55.0%
CGGAGGCAGTCCAAATGTCT+CGG + chr1.2:44472117-44472136 MS.gene46438:CDS 55.0%
CTGTGACTTCAGCACCATGG+TGG + chr1.2:44470477-44470496 MS.gene46438:CDS 55.0%
GAGGCAGTCCAAATGTCTCG+GGG + chr1.2:44472119-44472138 MS.gene46438:CDS 55.0%
GCCTGCGTCTGATGATACCA+TGG - chr1.2:44471717-44471736 None:intergenic 55.0%
GGAGGCAGTCCAAATGTCTC+GGG + chr1.2:44472118-44472137 MS.gene46438:CDS 55.0%
TCCAAATGTCTCGGGGTCAG+AGG + chr1.2:44472126-44472145 MS.gene46438:CDS 55.0%
AGCAGCTGGTAGACAGCTGC+TGG + chr1.2:44472276-44472295 MS.gene46438:CDS 60.0%
CGTAGACCAAGAGGATGCGG+TGG + chr1.2:44471935-44471954 MS.gene46438:CDS 60.0%
GGCCTACAGCTGCAGTCCAG+TGG + chr1.2:44472031-44472050 MS.gene46438:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 44470407 44472306 44470407 ID=MS.gene46438
chr1.2 mRNA 44470407 44472306 44470407 ID=MS.gene46438.t1;Parent=MS.gene46438
chr1.2 exon 44470407 44470674 44470407 ID=MS.gene46438.t1.exon1;Parent=MS.gene46438.t1
chr1.2 CDS 44470407 44470674 44470407 ID=cds.MS.gene46438.t1;Parent=MS.gene46438.t1
chr1.2 exon 44470865 44470977 44470865 ID=MS.gene46438.t1.exon2;Parent=MS.gene46438.t1
chr1.2 CDS 44470865 44470977 44470865 ID=cds.MS.gene46438.t1;Parent=MS.gene46438.t1
chr1.2 exon 44471077 44471145 44471077 ID=MS.gene46438.t1.exon3;Parent=MS.gene46438.t1
chr1.2 CDS 44471077 44471145 44471077 ID=cds.MS.gene46438.t1;Parent=MS.gene46438.t1
chr1.2 exon 44471646 44471786 44471646 ID=MS.gene46438.t1.exon4;Parent=MS.gene46438.t1
chr1.2 CDS 44471646 44471786 44471646 ID=cds.MS.gene46438.t1;Parent=MS.gene46438.t1
chr1.2 exon 44471899 44472306 44471899 ID=MS.gene46438.t1.exon5;Parent=MS.gene46438.t1
chr1.2 CDS 44471899 44472306 44471899 ID=cds.MS.gene46438.t1;Parent=MS.gene46438.t1
Gene Sequence

>MS.gene46438

ATGGCTATGCAACCTGTTTATCTTAAAGAACATGAAGGAAATGTCCACAATTCTGTTGGACAGTTTTCATCTGTGACTTCAGCACCATGGTGGAGTAATGCCTATGGATCTCAACCTGTTTATGGAGGAGAGTCTTGTGGCCAAATGAAACCTTTTTCATTGGAGCTTTCCAACTACATAGATCAAATTGCTCCGAGTAAGAACTTAGTTCGAGGAGTTGAACAATTGTTTGATAAAGGACATACAAACCAATTCACCATCTTTCCAGGTACTTGTTATTCGATATAATTCTGGTTTTGAATGAAATGATTTTTGTTAAGTTGGTTCTGGCTAAACGTGGGTTGAATGTAGCACGATTTATGTTCGGATACGTTTATGTAAAAGTGAGTTGAACATAAATTGTCATTTGAACTTTTGAACTCTCCTATACCTAGCCATTCAAACATTTTCATCTACAGATGACTGTAAGATGTCCGTTGATACACCGAATCATCAAGCAACCTTATCACTGCAATCATCATTTGCTGCCGAGCCACTTAATCGTTTTGAGCTAGGGTTTAACCAGCCTATGGTAAATCTTCTTAACAAAACAATCCCTTTGATCATGTTTTAGTATTTTACTTTTGATGTACATAAATTCATTATGTTTTTATTATCCTTTCCATGCTAGATCTGTGCAAAATATCCTTATATGGATCAATTTTACGGGCTCTTCTCGACTTATGGACCTCAAATCTCGGTTTGTCTTTAGCTCGGCTATTTTATTAATCTTTGTATATATCATGCAATGTCTATAAATACTTGAATGGGGATTTTTATTTTTTATTTGTGTACAGTGTATATGCTTACATGACAAAGCCAGAAATCTGTTTACTACTATCTTGTTAGTATTCTTCTAAATCTTTCAAATGTAATGGAGTTGATTATGAAATTTGTTGTAAATGAGTTTTAGGCTTTATGAATGAATTGTAAGACAAGCAATGAAATAAAAAAAAAAGTAAAGAAATTATGGTTAAGGATGTAAAGGGTAACAATATTAAGTTAGTATTATGATTTAAACACAAATGAGAAGAAAATTGGAGTGCATTGAACTTATAGCCTTAAAATTGAATTATATGATGCAATCTGTGTTGAAGTTTTTGCATGTATTCAGGTTCTGCTTTTAGTTACCATTTGTTTATCTGCTGCAGATATTTCATCAATTATTATTCATTTATGTATCTATATTTAATAAATTAGGGACGTGTTATGCTTCCGCTTAGCATGACATCTGACGACGGACCAACATACGTGAATGCTAAGCAATACCATGGTATCATCAGACGCAGGCATTCTCGTGCCAAAGCTGTGCTTCAGAATAAACTGATAAAGCGTAACAAGGTATGAAATATGAGTATTTTCCCTCACAACAATGTTTGAAAACTTGTGAAATAGTATATTTTTCCTTTTACTCTTTTTATACCTATATTAAGGTTTTGTATTTGTCTTGTAGCCATATATGCACGAATCGCGTCATCTACATGCAATGCGTAGACCAAGAGGATGCGGTGGTCGTTTCTTGAACACAAAAGTTTCTGCTAATGGAAACGGTAAAAGCGGGAGTGAAGAGAACATAAACACTGGTGGCCTACAGCTGCAGTCCAGTGGTTCTCAGAGTTCCGAAGTCTTACAATCTGAGGTTGGAACTTTAAATTCGTCAAAGGAGACAAACGGAGGCAGTCCAAATGTCTCGGGGTCAGAGGTGACTAGCATGTACACACAGGGAGGTCTTGATAACTTTACTGTCAATCATATCGGATCTACTGTCCACTCTTTGGGAGACATGATCGATACTGGACACGGTATCGTCATGCCAACAAAATGGTTTGCAGCAGCTGGTAGACAGCTGCTGGAACCATAA
Protein sequence

>MS.gene46438.t1

MAMQPVYLKEHEGNVHNSVGQFSSVTSAPWWSNAYGSQPVYGGESCGQMKPFSLELSNYIDQIAPSKNLVRGVEQLFDKGHTNQFTIFPDDCKMSVDTPNHQATLSLQSSFAAEPLNRFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRVMLPLSMTSDDGPTYVNAKQYHGIIRRRHSRAKAVLQNKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKVSANGNGKSGSEENINTGGLQLQSSGSQSSEVLQSEVGTLNSSKETNGGSPNVSGSEVTSMYTQGGLDNFTVNHIGSTVHSLGDMIDTGHGIVMPTKWFAAAGRQLLEP