Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23087.t1 | XP_013450229.1 | 96.4 | 334 | 11 | 1 | 1 | 334 | 1 | 333 | 3.40E-182 | 647.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23087.t1 | Q8LFU0 | 45.7 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 2.6e-50 | 200.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23087.t1 | I3TAV2 | 96.4 | 334 | 11 | 1 | 1 | 334 | 1 | 333 | 2.4e-182 | 647.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23087.t1 | TF | NF-YA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23087 | MS.gene007115 | PPI |
| MS.gene007115 | MS.gene23087 | PPI |
| MS.gene23087 | MS.gene41018 | PPI |
| MS.gene23087 | MS.gene46438 | PPI |
| MS.gene23087 | MS.gene034730 | PPI |
| MS.gene23087 | MS.gene26493 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23087.t1 | MTR_7g106450 | 96.407 | 334 | 11 | 1 | 1 | 334 | 1 | 333 | 0.0 | 671 |
| MS.gene23087.t1 | MTR_1g056530 | 70.091 | 331 | 90 | 6 | 1 | 327 | 1 | 326 | 3.23e-156 | 441 |
| MS.gene23087.t1 | MTR_8g037270 | 47.682 | 151 | 58 | 7 | 99 | 231 | 72 | 219 | 1.16e-30 | 118 |
| MS.gene23087.t1 | MTR_2g041090 | 49.296 | 142 | 51 | 7 | 115 | 236 | 10 | 150 | 4.97e-29 | 112 |
| MS.gene23087.t1 | MTR_2g030170 | 46.875 | 128 | 63 | 2 | 135 | 260 | 80 | 204 | 1.29e-28 | 110 |
| MS.gene23087.t1 | MTR_3g061510 | 48.031 | 127 | 51 | 5 | 106 | 221 | 104 | 226 | 4.33e-28 | 112 |
| MS.gene23087.t1 | MTR_3g061510 | 48.031 | 127 | 51 | 5 | 106 | 221 | 124 | 246 | 7.02e-28 | 111 |
| MS.gene23087.t1 | MTR_2g030170 | 50.962 | 104 | 48 | 1 | 157 | 260 | 137 | 237 | 1.89e-27 | 108 |
| MS.gene23087.t1 | MTR_2g099490 | 55.556 | 99 | 36 | 3 | 136 | 226 | 134 | 232 | 8.22e-26 | 105 |
| MS.gene23087.t1 | MTR_8g019540 | 47.458 | 118 | 47 | 4 | 122 | 226 | 110 | 225 | 2.15e-25 | 104 |
| MS.gene23087.t1 | MTR_2g099490 | 52.041 | 98 | 40 | 2 | 136 | 226 | 151 | 248 | 2.89e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23087.t1 | AT5G06510 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 7.88e-68 | 214 |
| MS.gene23087.t1 | AT5G06510 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 7.88e-68 | 214 |
| MS.gene23087.t1 | AT5G06510 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 7.88e-68 | 214 |
| MS.gene23087.t1 | AT5G06510 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 7.88e-68 | 214 |
| MS.gene23087.t1 | AT3G05690 | 44.340 | 318 | 118 | 18 | 34 | 333 | 18 | 294 | 4.44e-61 | 197 |
| MS.gene23087.t1 | AT5G06510 | 48.963 | 241 | 78 | 10 | 96 | 332 | 19 | 218 | 1.86e-60 | 193 |
| MS.gene23087.t1 | AT3G05690 | 44.340 | 318 | 118 | 18 | 34 | 333 | 55 | 331 | 3.86e-60 | 196 |
| MS.gene23087.t1 | AT5G06510 | 49.268 | 205 | 65 | 9 | 132 | 332 | 3 | 172 | 1.17e-49 | 164 |
| MS.gene23087.t1 | AT5G06510 | 49.268 | 205 | 65 | 9 | 132 | 332 | 3 | 172 | 1.17e-49 | 164 |
| MS.gene23087.t1 | AT2G34720 | 50.820 | 122 | 46 | 4 | 125 | 233 | 44 | 164 | 1.41e-32 | 120 |
| MS.gene23087.t1 | AT1G30500 | 53.846 | 104 | 42 | 1 | 129 | 226 | 53 | 156 | 4.54e-31 | 116 |
| MS.gene23087.t1 | AT2G34720 | 53.097 | 113 | 39 | 4 | 134 | 233 | 18 | 129 | 8.54e-31 | 114 |
| MS.gene23087.t1 | AT2G34720 | 53.097 | 113 | 39 | 4 | 134 | 233 | 18 | 129 | 8.54e-31 | 114 |
| MS.gene23087.t1 | AT1G30500 | 51.852 | 108 | 42 | 2 | 129 | 226 | 53 | 160 | 2.47e-30 | 114 |
| MS.gene23087.t1 | AT5G12840 | 43.871 | 155 | 68 | 5 | 125 | 267 | 121 | 268 | 2.25e-29 | 114 |
| MS.gene23087.t1 | AT5G12840 | 43.871 | 155 | 68 | 5 | 125 | 267 | 121 | 268 | 2.25e-29 | 114 |
| MS.gene23087.t1 | AT5G12840 | 43.871 | 155 | 68 | 5 | 125 | 267 | 122 | 269 | 2.37e-29 | 114 |
| MS.gene23087.t1 | AT5G12840 | 43.871 | 155 | 68 | 5 | 125 | 267 | 122 | 269 | 2.37e-29 | 114 |
| MS.gene23087.t1 | AT5G12840 | 43.871 | 155 | 68 | 5 | 125 | 267 | 122 | 269 | 2.37e-29 | 114 |
| MS.gene23087.t1 | AT1G72830 | 41.667 | 168 | 68 | 5 | 134 | 272 | 135 | 301 | 2.97e-29 | 115 |
| MS.gene23087.t1 | AT1G72830 | 41.420 | 169 | 68 | 6 | 134 | 272 | 135 | 302 | 1.10e-27 | 110 |
| MS.gene23087.t1 | AT3G20910 | 43.571 | 140 | 66 | 3 | 135 | 263 | 126 | 263 | 6.21e-26 | 105 |
| MS.gene23087.t1 | AT1G17590 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.03e-25 | 105 |
| MS.gene23087.t1 | AT1G17590 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.03e-25 | 105 |
| MS.gene23087.t1 | AT1G17590 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.03e-25 | 105 |
| MS.gene23087.t1 | AT1G17590 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.03e-25 | 105 |
| MS.gene23087.t1 | AT3G14020 | 55.670 | 97 | 34 | 3 | 134 | 226 | 140 | 231 | 1.11e-25 | 104 |
| MS.gene23087.t1 | AT3G14020 | 55.670 | 97 | 34 | 3 | 134 | 226 | 140 | 231 | 1.11e-25 | 104 |
| MS.gene23087.t1 | AT1G54160 | 59.211 | 76 | 30 | 1 | 151 | 226 | 164 | 238 | 1.57e-23 | 99.0 |
| MS.gene23087.t1 | AT1G72830 | 37.580 | 157 | 65 | 4 | 134 | 272 | 135 | 276 | 7.76e-20 | 89.0 |
Find 91 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTACAGAATCAAGCTTTA+AGG | 0.131683 | 7.2:-7510113 | None:intergenic |
| TTTGGATCTCAATCCCTTTA+TGG | 0.173015 | 7.2:+7507372 | MS.gene23087:CDS |
| ACCTCTGATCCAGAAATATT+TGG | 0.179271 | 7.2:-7509943 | None:intergenic |
| GGAAGCAGCCCAAATATTTC+TGG | 0.235006 | 7.2:+7509934 | MS.gene23087:CDS |
| TCAAAGCGATTCGGGGTATC+AGG | 0.251958 | 7.2:-7508617 | None:intergenic |
| GAACTCCTTGAATCTGATAT+TGG | 0.275281 | 7.2:+7509883 | MS.gene23087:CDS |
| AATCACTTTACCATCTTTCC+AGG | 0.307723 | 7.2:+7507516 | MS.gene23087:CDS |
| GCACCATGGTGGAGTAGTTT+TGG | 0.325147 | 7.2:+7507354 | MS.gene23087:CDS |
| ATCCCAGCTCAAAGCGATTC+GGG | 0.326860 | 7.2:-7508625 | None:intergenic |
| AATCGCTTTGAGCTGGGATT+TGG | 0.348352 | 7.2:+7508629 | MS.gene23087:CDS |
| CCAATGAAAAGGATTTGATT+TGG | 0.354007 | 7.2:-7507407 | None:intergenic |
| GCCAATGGAGATGGTAAAAC+TGG | 0.357725 | 7.2:+7509802 | MS.gene23087:CDS |
| GCCAGCTGCTGTTACCCATT+TGG | 0.363280 | 7.2:-7510079 | None:intergenic |
| AACTCTTCAAAGGAAACTAA+TGG | 0.364196 | 7.2:+7509913 | MS.gene23087:CDS |
| GGCCACCAGACTCTCCATAA+AGG | 0.392293 | 7.2:-7507386 | None:intergenic |
| TGGATCTTCTGTCCACTCTA+TGG | 0.396364 | 7.2:+7510017 | MS.gene23087:CDS |
| GCCACCAGACTCTCCATAAA+GGG | 0.396734 | 7.2:-7507385 | None:intergenic |
| GACTGCCGACTGCAATGATA+TGG | 0.407221 | 7.2:-7508594 | None:intergenic |
| AATCCCAGCTCAAAGCGATT+CGG | 0.417399 | 7.2:-7508626 | None:intergenic |
| CATCATCAGATGTCATGTTA+AGG | 0.417508 | 7.2:-7509022 | None:intergenic |
| AAAAGACACACTTGAATTTG+AGG | 0.417906 | 7.2:-7508858 | None:intergenic |
| CCTCTGATCCAGAAATATTT+GGG | 0.418372 | 7.2:-7509942 | None:intergenic |
| AGAGGAACTGAACATGTGTT+TGG | 0.420524 | 7.2:+7507480 | MS.gene23087:CDS |
| CAATCCCTTTATGGAGAGTC+TGG | 0.421990 | 7.2:+7507381 | MS.gene23087:CDS |
| GTGTTATCATGCCGACCAAA+TGG | 0.422418 | 7.2:+7510064 | MS.gene23087:CDS |
| AAGTTCCAATATCAGATTCA+AGG | 0.429838 | 7.2:-7509888 | None:intergenic |
| TATGGACTCATCTCAACCTA+TGG | 0.435805 | 7.2:+7508834 | MS.gene23087:CDS |
| TTTGTGACCAAGTACAGCTT+TGG | 0.439346 | 7.2:-7509105 | None:intergenic |
| CTCTCGGTCGCCGCATTGCA+TGG | 0.444185 | 7.2:-7509744 | None:intergenic |
| TTTGTGGGGCAATTATCATC+TGG | 0.452637 | 7.2:+7507312 | MS.gene23087:CDS |
| ATCATCAGATGTCATGTTAA+GGG | 0.456801 | 7.2:-7509021 | None:intergenic |
| TGGAAAGATGGTAAAGTGAT+TGG | 0.466352 | 7.2:-7507514 | None:intergenic |
| TGCTTAGCATTCACATAAAT+AGG | 0.466962 | 7.2:-7509047 | None:intergenic |
| GAGGAACTGAACATGTGTTT+GGG | 0.473124 | 7.2:+7507481 | MS.gene23087:CDS |
| CTGAACATGTGTTTGGGAAA+GGG | 0.489888 | 7.2:+7507487 | MS.gene23087:CDS |
| TCCCGCGCCAAAGCTGTACT+TGG | 0.491975 | 7.2:+7509098 | MS.gene23087:CDS |
| ACCCCGAATCGCTTTGAGCT+GGG | 0.493523 | 7.2:+7508623 | MS.gene23087:CDS |
| TACCCCGAATCGCTTTGAGC+TGG | 0.494554 | 7.2:+7508622 | MS.gene23087:CDS |
| CCATAAAATTGATCTGCATA+AGG | 0.496364 | 7.2:-7508816 | None:intergenic |
| AAATTACAAACCTGGAAAGA+TGG | 0.499330 | 7.2:-7507526 | None:intergenic |
| ACCAAATGGGTAACAGCAGC+TGG | 0.501310 | 7.2:+7510078 | MS.gene23087:CDS |
| CATAGGTGGCTCCAATGAAA+AGG | 0.504139 | 7.2:-7507418 | None:intergenic |
| CACTTGAATTTGAGGTCCAT+AGG | 0.510920 | 7.2:-7508850 | None:intergenic |
| TGGAACTTTAAACTCTTCAA+AGG | 0.511753 | 7.2:+7509903 | MS.gene23087:CDS |
| AGGTGACTAGTTTGTATTCG+AGG | 0.519014 | 7.2:+7509962 | MS.gene23087:CDS |
| TGGCGTGACTCGTGCATGTA+GGG | 0.520062 | 7.2:-7509718 | None:intergenic |
| GCTGGGATTTGGTCAACCTA+TGG | 0.529602 | 7.2:+7508640 | MS.gene23087:CDS |
| ATGGCGTGACTCGTGCATGT+AGG | 0.531463 | 7.2:-7509719 | None:intergenic |
| TGTTATCATGCCGACCAAAT+GGG | 0.536297 | 7.2:+7510065 | MS.gene23087:CDS |
| TGCAATGATATGGCTGTATG+AGG | 0.536424 | 7.2:-7508584 | None:intergenic |
| AGCTTTACCGTCAATCACCT+TGG | 0.539572 | 7.2:+7509997 | MS.gene23087:CDS |
| CTTAACATGACATCTGATGA+TGG | 0.543590 | 7.2:+7509023 | MS.gene23087:CDS |
| GGTGACTAGTTTGTATTCGA+GGG | 0.543743 | 7.2:+7509963 | MS.gene23087:CDS |
| ACTGAACATGTGTTTGGGAA+AGG | 0.545969 | 7.2:+7507486 | MS.gene23087:CDS |
| AAGAAATCTGCCAATGGAGA+TGG | 0.548636 | 7.2:+7509793 | MS.gene23087:CDS |
| ATGCGGCGACCGAGAGGATG+TGG | 0.549647 | 7.2:+7509751 | MS.gene23087:CDS |
| CCCAAATATTTCTGGATCAG+AGG | 0.555972 | 7.2:+7509942 | MS.gene23087:CDS |
| ATTGCTTAGTTGCAGCAAGT+TGG | 0.559108 | 7.2:-7507452 | None:intergenic |
| GACATGATCGATGGTGGGCG+TGG | 0.559837 | 7.2:+7510042 | MS.gene23087:CDS |
| ACCAAGTACAGCTTTGGCGC+GGG | 0.561918 | 7.2:-7509099 | None:intergenic |
| AGAAGATCCAAGGTGATTGA+CGG | 0.562013 | 7.2:-7510004 | None:intergenic |
| GCTGCTGTTACCCATTTGGT+CGG | 0.574530 | 7.2:-7510075 | None:intergenic |
| ATGGCAGACATGATCGATGG+TGG | 0.576851 | 7.2:+7510036 | MS.gene23087:CDS |
| GTCGCCGCATTGCATGGAGA+TGG | 0.577807 | 7.2:-7509738 | None:intergenic |
| CAAAGCGATTCGGGGTATCA+GGG | 0.579590 | 7.2:-7508616 | None:intergenic |
| GTTTATCTGAAAGAACATGA+TGG | 0.580817 | 7.2:+7507276 | MS.gene23087:CDS |
| CAAATTGATTAAACGTAACA+AGG | 0.583050 | 7.2:+7509124 | MS.gene23087:CDS |
| CGATCATGTCTGCCATAGAG+TGG | 0.586528 | 7.2:-7510029 | None:intergenic |
| TCATCAGATGTCATGTTAAG+GGG | 0.601001 | 7.2:-7509020 | None:intergenic |
| AGTTGGTCAACAGCAGACAT+AGG | 0.601111 | 7.2:-7507435 | None:intergenic |
| GACCAAGTACAGCTTTGGCG+CGG | 0.601436 | 7.2:-7509100 | None:intergenic |
| TACAGCCATATCATTGCAGT+CGG | 0.605390 | 7.2:+7508589 | MS.gene23087:CDS |
| GTGAATGCTAAGCAGTACAA+TGG | 0.608645 | 7.2:+7509056 | MS.gene23087:CDS |
| AGTCAACAATTGCAGTTCAG+TGG | 0.610037 | 7.2:+7509847 | MS.gene23087:CDS |
| GCAACTAAGCAATCTGCTAG+AGG | 0.619360 | 7.2:+7507462 | MS.gene23087:CDS |
| TGGCAGACATGATCGATGGT+GGG | 0.625708 | 7.2:+7510037 | MS.gene23087:CDS |
| TAGAGTGGACAGAAGATCCA+AGG | 0.626448 | 7.2:-7510014 | None:intergenic |
| CATGCAATGCGGCGACCGAG+AGG | 0.626832 | 7.2:+7509745 | MS.gene23087:CDS |
| AACACAAAGAAATCTGCCAA+TGG | 0.628709 | 7.2:+7509787 | MS.gene23087:CDS |
| AAACGACCACCACATCCTCT+CGG | 0.633569 | 7.2:-7509760 | None:intergenic |
| GTGACTAGTTTGTATTCGAG+GGG | 0.634644 | 7.2:+7509964 | MS.gene23087:CDS |
| TCCCTTTATGGAGAGTCTGG+TGG | 0.654622 | 7.2:+7507384 | MS.gene23087:CDS |
| TCCCAGCTCAAAGCGATTCG+GGG | 0.658985 | 7.2:-7508624 | None:intergenic |
| TCTATGGCAGACATGATCGA+TGG | 0.660420 | 7.2:+7510033 | MS.gene23087:CDS |
| CGGCGACCGAGAGGATGTGG+TGG | 0.666958 | 7.2:+7509754 | MS.gene23087:CDS |
| ATTCAGCTGCTGCACCATGG+TGG | 0.677437 | 7.2:+7507343 | MS.gene23087:CDS |
| TGGTCAACAGCAGACATAGG+TGG | 0.678879 | 7.2:-7507432 | None:intergenic |
| CACGCCATCTCCATGCAATG+CGG | 0.685964 | 7.2:+7509734 | MS.gene23087:CDS |
| ATAATTCAGCTGCTGCACCA+TGG | 0.686059 | 7.2:+7507340 | MS.gene23087:CDS |
| ACAATGGAATCATTAGACGT+CGG | 0.715449 | 7.2:+7509072 | MS.gene23087:CDS |
| GATCCAAAACTACTCCACCA+TGG | 0.743317 | 7.2:-7507357 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTGTTATTAACATTCT+TGG | - | chr7.2:7509573-7509592 | None:intergenic | 15.0% |
| !!! | AATATTTGAGTTGTTTTATT+TGG | + | chr7.2:7507644-7507663 | MS.gene23087:intron | 15.0% |
| !! | AAGTTATCATCTATAACTTA+TGG | - | chr7.2:7507805-7507824 | None:intergenic | 20.0% |
| !! | AATAAAAAATCTTTGCATTC+TGG | + | chr7.2:7508015-7508034 | MS.gene23087:intron | 20.0% |
| !! | AGTTTCCAAACAATAAAAAA+TGG | - | chr7.2:7508369-7508388 | None:intergenic | 20.0% |
| !! | TATATGTGTGTTATAGATTT+AGG | - | chr7.2:7507930-7507949 | None:intergenic | 20.0% |
| !! | TCTGCTTGAAAAAAAATAAA+AGG | - | chr7.2:7509413-7509432 | None:intergenic | 20.0% |
| !! | TGAAATTATAGGAATCTAAT+AGG | - | chr7.2:7508266-7508285 | None:intergenic | 20.0% |
| !!! | ACATTTTTATCTAGTTAGAT+AGG | - | chr7.2:7508127-7508146 | None:intergenic | 20.0% |
| !!! | ATTTTCTAACAATGCAAAAA+TGG | + | chr7.2:7508239-7508258 | MS.gene23087:intron | 20.0% |
| !!! | CATTTTTATCTAGTTAGATA+GGG | - | chr7.2:7508126-7508145 | None:intergenic | 20.0% |
| !!! | GTTTGACTTAATTTTATCTT+TGG | + | chr7.2:7507834-7507853 | MS.gene23087:intron | 20.0% |
| !!! | TCAAATGGTTTTAAACTATA+GGG | + | chr7.2:7508401-7508420 | MS.gene23087:intron | 20.0% |
| !!! | TTCAAATGGTTTTAAACTAT+AGG | + | chr7.2:7508400-7508419 | MS.gene23087:intron | 20.0% |
| !!! | TTTTATTGTTTGGAAACTAT+AGG | + | chr7.2:7508371-7508390 | MS.gene23087:intron | 20.0% |
| ! | AAAAAATGGTCCCTATAAAT+TGG | - | chr7.2:7508355-7508374 | None:intergenic | 25.0% |
| ! | AAGAAGAAACATTTGAAAGT+TGG | - | chr7.2:7508529-7508548 | None:intergenic | 25.0% |
| ! | ACAAAACAAGTCCAATTTAT+AGG | + | chr7.2:7508341-7508360 | MS.gene23087:intron | 25.0% |
| ! | ACTATAGGAATTCTTTCAAA+TGG | + | chr7.2:7508386-7508405 | MS.gene23087:intron | 25.0% |
| ! | AGACTATTTACTATAGCTTA+CGG | + | chr7.2:7507761-7507780 | MS.gene23087:intron | 25.0% |
| ! | ATATGAGGAATCATGAAATA+AGG | + | chr7.2:7509437-7509456 | MS.gene23087:intron | 25.0% |
| ! | ATGTTTGTATGTAACAATGT+AGG | + | chr7.2:7508983-7509002 | MS.gene23087:intron | 25.0% |
| ! | CAAAACAAGTCCAATTTATA+GGG | + | chr7.2:7508342-7508361 | MS.gene23087:intron | 25.0% |
| ! | CAAATTGATTAAACGTAACA+AGG | + | chr7.2:7509124-7509143 | MS.gene23087:CDS | 25.0% |
| ! | CATTATTGGAGTGAAATTAT+AGG | - | chr7.2:7508277-7508296 | None:intergenic | 25.0% |
| ! | GGCAATAATTTGAAAAGAAA+TGG | + | chr7.2:7507612-7507631 | MS.gene23087:intron | 25.0% |
| ! | TCAAAAAATGTATGGCAAAA+AGG | - | chr7.2:7507974-7507993 | None:intergenic | 25.0% |
| ! | TCAAAATATCTTCAGAAGTA+AGG | - | chr7.2:7509328-7509347 | None:intergenic | 25.0% |
| ! | TCTCTACAAAATAACTTCTA+CGG | + | chr7.2:7508670-7508689 | MS.gene23087:intron | 25.0% |
| ! | TGTTTGTATGTAACAATGTA+GGG | + | chr7.2:7508984-7509003 | MS.gene23087:intron | 25.0% |
| ! | TTCCTGAAATTACTCTAATA+AGG | + | chr7.2:7508316-7508335 | MS.gene23087:intron | 25.0% |
| ! | TTCCTTATTAGAGTAATTTC+AGG | - | chr7.2:7508321-7508340 | None:intergenic | 25.0% |
| ! | TTGAAAAGAAATGGAAGTAA+TGG | + | chr7.2:7507621-7507640 | MS.gene23087:intron | 25.0% |
| ! | TTGATTAATCTTAGTCCAAT+AGG | + | chr7.2:7509229-7509248 | MS.gene23087:intron | 25.0% |
| ! | TTTCAAGCAGAAATAATATG+AGG | + | chr7.2:7509422-7509441 | MS.gene23087:intron | 25.0% |
| !! | TAGTAATTGATATCGACTAT+TGG | + | chr7.2:7507688-7507707 | MS.gene23087:intron | 25.0% |
| !!! | ACTTCTGAAGATATTTTGAA+AGG | + | chr7.2:7509329-7509348 | MS.gene23087:intron | 25.0% |
| !!! | TCAGATGATTTTAAAATGTC+AGG | + | chr7.2:7508548-7508567 | MS.gene23087:intron | 25.0% |
| !!! | TTTTCTTTTTGTCTTGTTTC+TGG | + | chr7.2:7509192-7509211 | MS.gene23087:intron | 25.0% |
| !!! | TTTTTGCCATACATTTTTTG+AGG | + | chr7.2:7507973-7507992 | MS.gene23087:intron | 25.0% |
| AAAAGACACACTTGAATTTG+AGG | - | chr7.2:7508861-7508880 | None:intergenic | 30.0% | |
| AAATTACAAACCTGGAAAGA+TGG | - | chr7.2:7507529-7507548 | None:intergenic | 30.0% | |
| AACACACATATATCACAAGT+TGG | + | chr7.2:7507938-7507957 | MS.gene23087:intron | 30.0% | |
| AACTCTTCAAAGGAAACTAA+TGG | + | chr7.2:7509913-7509932 | MS.gene23087:CDS | 30.0% | |
| AAGTTCCAATATCAGATTCA+AGG | - | chr7.2:7509891-7509910 | None:intergenic | 30.0% | |
| AGTATAAGATCATTGAAGCT+TGG | - | chr7.2:7509527-7509546 | None:intergenic | 30.0% | |
| ATACTTTGTACAGATCTACA+AGG | - | chr7.2:7508796-7508815 | None:intergenic | 30.0% | |
| ATCATCAGATGTCATGTTAA+GGG | - | chr7.2:7509024-7509043 | None:intergenic | 30.0% | |
| ATGCATTTACTCAAGAAACA+AGG | + | chr7.2:7509252-7509271 | MS.gene23087:intron | 30.0% | |
| CAACTACCTCAAAAAATGTA+TGG | - | chr7.2:7507982-7508001 | None:intergenic | 30.0% | |
| CCAATGAAAAGGATTTGATT+TGG | - | chr7.2:7507410-7507429 | None:intergenic | 30.0% | |
| CCATAAAATTGATCTGCATA+AGG | - | chr7.2:7508819-7508838 | None:intergenic | 30.0% | |
| CTACAATCAAATTACAAACC+TGG | - | chr7.2:7507537-7507556 | None:intergenic | 30.0% | |
| CTATAAGTGTTTATCCAAAC+AGG | + | chr7.2:7507903-7507922 | MS.gene23087:intron | 30.0% | |
| GTCAAGTGTTTGTACTTAAT+AGG | - | chr7.2:7507568-7507587 | None:intergenic | 30.0% | |
| GTTTATCTGAAAGAACATGA+TGG | + | chr7.2:7507276-7507295 | MS.gene23087:CDS | 30.0% | |
| TACTTTGTACAGATCTACAA+GGG | - | chr7.2:7508795-7508814 | None:intergenic | 30.0% | |
| TGCTTAGCATTCACATAAAT+AGG | - | chr7.2:7509050-7509069 | None:intergenic | 30.0% | |
| TGGAACTTTAAACTCTTCAA+AGG | + | chr7.2:7509903-7509922 | MS.gene23087:CDS | 30.0% | |
| TTATAGATTTAGGTCCTGTT+TGG | - | chr7.2:7507920-7507939 | None:intergenic | 30.0% | |
| TTCACTCCAATAATGCAAAA+TGG | + | chr7.2:7508282-7508301 | MS.gene23087:intron | 30.0% | |
| TTCCAATAATCGAACAAAAG+AGG | - | chr7.2:7508479-7508498 | None:intergenic | 30.0% | |
| TTCTCCAATATAAGTCAGTT+GGG | - | chr7.2:7508054-7508073 | None:intergenic | 30.0% | |
| TTTCTCCAATATAAGTCAGT+TGG | - | chr7.2:7508055-7508074 | None:intergenic | 30.0% | |
| ! | CCAAATCAAATCCTTTTCAT+TGG | + | chr7.2:7507407-7507426 | MS.gene23087:CDS | 30.0% |
| ! | CCTTATGCAGATCAATTTTA+TGG | + | chr7.2:7508816-7508835 | MS.gene23087:CDS | 30.0% |
| ! | TACTAAATCATCAGAGTACT+TGG | - | chr7.2:7508731-7508750 | None:intergenic | 30.0% |
| !!! | AGGGACCATTTTTTATTGTT+TGG | + | chr7.2:7508361-7508380 | MS.gene23087:intron | 30.0% |
| !!! | CATACATTTTTTGAGGTAGT+TGG | + | chr7.2:7507980-7507999 | MS.gene23087:intron | 30.0% |
| !!! | TTTAAGGGTTTTGAACTGTA+GGG | - | chr7.2:7508207-7508226 | None:intergenic | 30.0% |
| !!! | TTTTAAGGGTTTTGAACTGT+AGG | - | chr7.2:7508208-7508227 | None:intergenic | 30.0% |
| AACACAAAGAAATCTGCCAA+TGG | + | chr7.2:7509787-7509806 | MS.gene23087:CDS | 35.0% | |
| AATCACTTTACCATCTTTCC+AGG | + | chr7.2:7507516-7507535 | MS.gene23087:CDS | 35.0% | |
| ACAATGGAATCATTAGACGT+CGG | + | chr7.2:7509072-7509091 | MS.gene23087:CDS | 35.0% | |
| ACCTCTGATCCAGAAATATT+TGG | - | chr7.2:7509946-7509965 | None:intergenic | 35.0% | |
| ACTTCAATGAAGACAGAATC+TGG | - | chr7.2:7509172-7509191 | None:intergenic | 35.0% | |
| ACTTTGTACAGATCTACAAG+GGG | - | chr7.2:7508794-7508813 | None:intergenic | 35.0% | |
| AGACATGTTTCCCTTATGAT+TGG | + | chr7.2:7508761-7508780 | MS.gene23087:intron | 35.0% | |
| CATCATCAGATGTCATGTTA+AGG | - | chr7.2:7509025-7509044 | None:intergenic | 35.0% | |
| CCTCTGATCCAGAAATATTT+GGG | - | chr7.2:7509945-7509964 | None:intergenic | 35.0% | |
| CTTAACATGACATCTGATGA+TGG | + | chr7.2:7509023-7509042 | MS.gene23087:CDS | 35.0% | |
| CTTCAATGAAGACAGAATCT+GGG | - | chr7.2:7509171-7509190 | None:intergenic | 35.0% | |
| CTTCGTTGAGATTATTGAAG+AGG | + | chr7.2:7508090-7508109 | MS.gene23087:intron | 35.0% | |
| CTTGAGTAAATGCATCCTAT+TGG | - | chr7.2:7509247-7509266 | None:intergenic | 35.0% | |
| GAACTCCTTGAATCTGATAT+TGG | + | chr7.2:7509883-7509902 | MS.gene23087:CDS | 35.0% | |
| GGGAAACATACCAATCATAA+GGG | - | chr7.2:7508774-7508793 | None:intergenic | 35.0% | |
| GTAATTTCAGGAACTGAATG+AGG | - | chr7.2:7508309-7508328 | None:intergenic | 35.0% | |
| TCATCAGATGTCATGTTAAG+GGG | - | chr7.2:7509023-7509042 | None:intergenic | 35.0% | |
| TGGAAAGATGGTAAAGTGAT+TGG | - | chr7.2:7507517-7507536 | None:intergenic | 35.0% | |
| TTGTAGAGAAGTCTTACCAT+AGG | - | chr7.2:7508659-7508678 | None:intergenic | 35.0% | |
| TTTGGATCTCAATCCCTTTA+TGG | + | chr7.2:7507372-7507391 | MS.gene23087:CDS | 35.0% | |
| ! | GAATTGCACACAATTTTGTG+GGG | + | chr7.2:7507298-7507317 | MS.gene23087:CDS | 35.0% |
| ! | GGAATTGCACACAATTTTGT+GGG | + | chr7.2:7507297-7507316 | MS.gene23087:CDS | 35.0% |
| ! | TGAGGACCATTTTGCATTAT+TGG | - | chr7.2:7508291-7508310 | None:intergenic | 35.0% |
| ! | TGCCTCTTTTGTTCGATTAT+TGG | + | chr7.2:7508474-7508493 | MS.gene23087:intron | 35.0% |
| ! | TGGAATTGCACACAATTTTG+TGG | + | chr7.2:7507296-7507315 | MS.gene23087:CDS | 35.0% |
| !! | GAAAGTTGGTATGTCAAGTA+CGG | - | chr7.2:7508515-7508534 | None:intergenic | 35.0% |
| !!! | AGCGATTTTTGAGTCATCAA+AGG | - | chr7.2:7509609-7509628 | None:intergenic | 35.0% |
| AAGAAATCTGCCAATGGAGA+TGG | + | chr7.2:7509793-7509812 | MS.gene23087:CDS | 40.0% | |
| ACTGAACATGTGTTTGGGAA+AGG | + | chr7.2:7507486-7507505 | MS.gene23087:CDS | 40.0% | |
| AGAAGATCCAAGGTGATTGA+CGG | - | chr7.2:7510007-7510026 | None:intergenic | 40.0% | |
| AGAGGAACTGAACATGTGTT+TGG | + | chr7.2:7507480-7507499 | MS.gene23087:CDS | 40.0% | |
| AGTCAACAATTGCAGTTCAG+TGG | + | chr7.2:7509847-7509866 | MS.gene23087:CDS | 40.0% | |
| ATTGCTTAGTTGCAGCAAGT+TGG | - | chr7.2:7507455-7507474 | None:intergenic | 40.0% | |
| CCAATATAAGTCAGTTGGGA+GGG | - | chr7.2:7508050-7508069 | None:intergenic | 40.0% | |
| CTGAACATGTGTTTGGGAAA+GGG | + | chr7.2:7507487-7507506 | MS.gene23087:CDS | 40.0% | |
| GAGGAACTGAACATGTGTTT+GGG | + | chr7.2:7507481-7507500 | MS.gene23087:CDS | 40.0% | |
| GGGGAAACATACCAATCATA+AGG | - | chr7.2:7508775-7508794 | None:intergenic | 40.0% | |
| GTAGGGACTAAAAGTGAACA+TGG | - | chr7.2:7508190-7508209 | None:intergenic | 40.0% | |
| GTGAATGCTAAGCAGTACAA+TGG | + | chr7.2:7509056-7509075 | MS.gene23087:CDS | 40.0% | |
| TACAGCCATATCATTGCAGT+CGG | + | chr7.2:7508589-7508608 | MS.gene23087:CDS | 40.0% | |
| TATGGACTCATCTCAACCTA+TGG | + | chr7.2:7508834-7508853 | MS.gene23087:CDS | 40.0% | |
| TCCAATATAAGTCAGTTGGG+AGG | - | chr7.2:7508051-7508070 | None:intergenic | 40.0% | |
| TGCAATGATATGGCTGTATG+AGG | - | chr7.2:7508587-7508606 | None:intergenic | 40.0% | |
| TGTTATCATGCCGACCAAAT+GGG | + | chr7.2:7510065-7510084 | MS.gene23087:CDS | 40.0% | |
| TTTGTGACCAAGTACAGCTT+TGG | - | chr7.2:7509108-7509127 | None:intergenic | 40.0% | |
| TTTGTGGGGCAATTATCATC+TGG | + | chr7.2:7507312-7507331 | MS.gene23087:CDS | 40.0% | |
| ! | CACTTGAATTTGAGGTCCAT+AGG | - | chr7.2:7508853-7508872 | None:intergenic | 40.0% |
| ! | TCCAGTTTTACCATCTCCAT+TGG | - | chr7.2:7509806-7509825 | None:intergenic | 40.0% |
| !! | AGGTGACTAGTTTGTATTCG+AGG | + | chr7.2:7509962-7509981 | MS.gene23087:CDS | 40.0% |
| !! | CCCAAATATTTCTGGATCAG+AGG | + | chr7.2:7509942-7509961 | MS.gene23087:CDS | 40.0% |
| !! | GGTGACTAGTTTGTATTCGA+GGG | + | chr7.2:7509963-7509982 | MS.gene23087:CDS | 40.0% |
| !! | GTGACTAGTTTGTATTCGAG+GGG | + | chr7.2:7509964-7509983 | MS.gene23087:CDS | 40.0% |
| AATCCCAGCTCAAAGCGATT+CGG | - | chr7.2:7508629-7508648 | None:intergenic | 45.0% | |
| ACATAGACACACACGAACAC+TGG | + | chr7.2:7507591-7507610 | MS.gene23087:intron | 45.0% | |
| AGCTTTACCGTCAATCACCT+TGG | + | chr7.2:7509997-7510016 | MS.gene23087:CDS | 45.0% | |
| AGTTGGTCAACAGCAGACAT+AGG | - | chr7.2:7507438-7507457 | None:intergenic | 45.0% | |
| ATAATTCAGCTGCTGCACCA+TGG | + | chr7.2:7507340-7507359 | MS.gene23087:CDS | 45.0% | |
| CAATCCCTTTATGGAGAGTC+TGG | + | chr7.2:7507381-7507400 | MS.gene23087:CDS | 45.0% | |
| CATAGGTGGCTCCAATGAAA+AGG | - | chr7.2:7507421-7507440 | None:intergenic | 45.0% | |
| GATCCAAAACTACTCCACCA+TGG | - | chr7.2:7507360-7507379 | None:intergenic | 45.0% | |
| GCAACTAAGCAATCTGCTAG+AGG | + | chr7.2:7507462-7507481 | MS.gene23087:CDS | 45.0% | |
| GCCAATGGAGATGGTAAAAC+TGG | + | chr7.2:7509802-7509821 | MS.gene23087:CDS | 45.0% | |
| GGAAGCAGCCCAAATATTTC+TGG | + | chr7.2:7509934-7509953 | MS.gene23087:CDS | 45.0% | |
| GTGTTATCATGCCGACCAAA+TGG | + | chr7.2:7510064-7510083 | MS.gene23087:CDS | 45.0% | |
| TAGAGTGGACAGAAGATCCA+AGG | - | chr7.2:7510017-7510036 | None:intergenic | 45.0% | |
| TCTATGGCAGACATGATCGA+TGG | + | chr7.2:7510033-7510052 | MS.gene23087:CDS | 45.0% | |
| TGGATCTTCTGTCCACTCTA+TGG | + | chr7.2:7510017-7510036 | MS.gene23087:CDS | 45.0% | |
| ! | AATCGCTTTGAGCTGGGATT+TGG | + | chr7.2:7508629-7508648 | MS.gene23087:CDS | 45.0% |
| ! | CCCTCCCAACTGACTTATAT+TGG | + | chr7.2:7508047-7508066 | MS.gene23087:intron | 45.0% |
| ! | GAATCTGGGACTATCATGCA+TGG | - | chr7.2:7509157-7509176 | None:intergenic | 45.0% |
| !!! | AAATAATAAAATACTTTTTA+AGG | - | chr7.2:7508223-7508242 | None:intergenic | 5.0% |
| !!! | AATAATAAAATACTTTTTAA+GGG | - | chr7.2:7508222-7508241 | None:intergenic | 5.0% |
| AAACGACCACCACATCCTCT+CGG | - | chr7.2:7509763-7509782 | None:intergenic | 50.0% | |
| ACCAAATGGGTAACAGCAGC+TGG | + | chr7.2:7510078-7510097 | MS.gene23087:CDS | 50.0% | |
| ATCCCAGCTCAAAGCGATTC+GGG | - | chr7.2:7508628-7508647 | None:intergenic | 50.0% | |
| ATGGCAGACATGATCGATGG+TGG | + | chr7.2:7510036-7510055 | MS.gene23087:CDS | 50.0% | |
| CGATCATGTCTGCCATAGAG+TGG | - | chr7.2:7510032-7510051 | None:intergenic | 50.0% | |
| GCCACCAGACTCTCCATAAA+GGG | - | chr7.2:7507388-7507407 | None:intergenic | 50.0% | |
| GCTGCTGTTACCCATTTGGT+CGG | - | chr7.2:7510078-7510097 | None:intergenic | 50.0% | |
| TCCCTTTATGGAGAGTCTGG+TGG | + | chr7.2:7507384-7507403 | MS.gene23087:CDS | 50.0% | |
| TGGCAGACATGATCGATGGT+GGG | + | chr7.2:7510037-7510056 | MS.gene23087:CDS | 50.0% | |
| TGGTCAACAGCAGACATAGG+TGG | - | chr7.2:7507435-7507454 | None:intergenic | 50.0% | |
| ! | CAAAGCGATTCGGGGTATCA+GGG | - | chr7.2:7508619-7508638 | None:intergenic | 50.0% |
| ! | GACTGCCGACTGCAATGATA+TGG | - | chr7.2:7508597-7508616 | None:intergenic | 50.0% |
| ! | GCTGGGATTTGGTCAACCTA+TGG | + | chr7.2:7508640-7508659 | MS.gene23087:CDS | 50.0% |
| ! | TCAAAGCGATTCGGGGTATC+AGG | - | chr7.2:7508620-7508639 | None:intergenic | 50.0% |
| !! | GCACCATGGTGGAGTAGTTT+TGG | + | chr7.2:7507354-7507373 | MS.gene23087:CDS | 50.0% |
| ATGGCGTGACTCGTGCATGT+AGG | - | chr7.2:7509722-7509741 | None:intergenic | 55.0% | |
| ATTCAGCTGCTGCACCATGG+TGG | + | chr7.2:7507343-7507362 | MS.gene23087:CDS | 55.0% | |
| CACGCCATCTCCATGCAATG+CGG | + | chr7.2:7509734-7509753 | MS.gene23087:CDS | 55.0% | |
| GCCAGCTGCTGTTACCCATT+TGG | - | chr7.2:7510082-7510101 | None:intergenic | 55.0% | |
| GGCCACCAGACTCTCCATAA+AGG | - | chr7.2:7507389-7507408 | None:intergenic | 55.0% | |
| TCCCAGCTCAAAGCGATTCG+GGG | - | chr7.2:7508627-7508646 | None:intergenic | 55.0% | |
| TGGCGTGACTCGTGCATGTA+GGG | - | chr7.2:7509721-7509740 | None:intergenic | 55.0% | |
| ! | ACCAAGTACAGCTTTGGCGC+GGG | - | chr7.2:7509102-7509121 | None:intergenic | 55.0% |
| ! | ACCCCGAATCGCTTTGAGCT+GGG | + | chr7.2:7508623-7508642 | MS.gene23087:CDS | 55.0% |
| ! | GACCAAGTACAGCTTTGGCG+CGG | - | chr7.2:7509103-7509122 | None:intergenic | 55.0% |
| ! | TACCCCGAATCGCTTTGAGC+TGG | + | chr7.2:7508622-7508641 | MS.gene23087:CDS | 55.0% |
| GTCGCCGCATTGCATGGAGA+TGG | - | chr7.2:7509741-7509760 | None:intergenic | 60.0% | |
| TCCCGCGCCAAAGCTGTACT+TGG | + | chr7.2:7509098-7509117 | MS.gene23087:CDS | 60.0% | |
| !! | GACATGATCGATGGTGGGCG+TGG | + | chr7.2:7510042-7510061 | MS.gene23087:CDS | 60.0% |
| ATGCGGCGACCGAGAGGATG+TGG | + | chr7.2:7509751-7509770 | MS.gene23087:CDS | 65.0% | |
| CATGCAATGCGGCGACCGAG+AGG | + | chr7.2:7509745-7509764 | MS.gene23087:CDS | 65.0% | |
| CTCTCGGTCGCCGCATTGCA+TGG | - | chr7.2:7509747-7509766 | None:intergenic | 65.0% | |
| CGGCGACCGAGAGGATGTGG+TGG | + | chr7.2:7509754-7509773 | MS.gene23087:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 7507261 | 7510125 | 7507261 | ID=MS.gene23087 |
| chr7.2 | mRNA | 7507261 | 7510125 | 7507261 | ID=MS.gene23087.t1;Parent=MS.gene23087 |
| chr7.2 | exon | 7507261 | 7507537 | 7507261 | ID=MS.gene23087.t1.exon1;Parent=MS.gene23087.t1 |
| chr7.2 | CDS | 7507261 | 7507537 | 7507261 | ID=cds.MS.gene23087.t1;Parent=MS.gene23087.t1 |
| chr7.2 | exon | 7508552 | 7508661 | 7508552 | ID=MS.gene23087.t1.exon2;Parent=MS.gene23087.t1 |
| chr7.2 | CDS | 7508552 | 7508661 | 7508552 | ID=cds.MS.gene23087.t1;Parent=MS.gene23087.t1 |
| chr7.2 | exon | 7508801 | 7508869 | 7508801 | ID=MS.gene23087.t1.exon3;Parent=MS.gene23087.t1 |
| chr7.2 | CDS | 7508801 | 7508869 | 7508801 | ID=cds.MS.gene23087.t1;Parent=MS.gene23087.t1 |
| chr7.2 | exon | 7509005 | 7509145 | 7509005 | ID=MS.gene23087.t1.exon4;Parent=MS.gene23087.t1 |
| chr7.2 | CDS | 7509005 | 7509145 | 7509005 | ID=cds.MS.gene23087.t1;Parent=MS.gene23087.t1 |
| chr7.2 | exon | 7509718 | 7510125 | 7509718 | ID=MS.gene23087.t1.exon5;Parent=MS.gene23087.t1 |
| chr7.2 | CDS | 7509718 | 7510125 | 7509718 | ID=cds.MS.gene23087.t1;Parent=MS.gene23087.t1 |
| Gene Sequence |
| Protein sequence |
