AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41018

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41018.t1 MTR_1g056530 96.988 332 10 0 1 332 1 332 0.0 674
MS.gene41018.t1 MTR_7g106450 71.125 329 86 6 1 324 1 325 1.45e-162 457
MS.gene41018.t1 MTR_8g037270 50.400 125 49 4 128 241 109 231 9.07e-30 115
MS.gene41018.t1 MTR_2g041090 49.624 133 49 4 116 231 14 145 1.97e-29 113
MS.gene41018.t1 MTR_2g030170 50.467 107 51 1 133 237 80 186 2.74e-28 109
MS.gene41018.t1 MTR_3g061510 49.167 120 45 4 127 232 125 242 3.90e-27 109
MS.gene41018.t1 MTR_2g030170 56.627 83 36 0 155 237 137 219 4.57e-27 107
MS.gene41018.t1 MTR_3g061510 49.167 120 45 4 127 232 145 262 5.21e-27 109
MS.gene41018.t1 MTR_8g019540 47.414 116 46 4 120 222 110 223 6.48e-26 105
MS.gene41018.t1 MTR_2g099490 44.118 136 67 4 134 260 134 269 7.97e-25 102
MS.gene41018.t1 MTR_2g099490 36.872 179 99 5 95 260 108 285 1.76e-24 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41018.t1 AT5G06510 44.518 301 109 13 29 325 13 259 1.57e-61 197
MS.gene41018.t1 AT5G06510 44.518 301 109 13 29 325 13 259 1.57e-61 197
MS.gene41018.t1 AT5G06510 44.518 301 109 13 29 325 13 259 1.57e-61 197
MS.gene41018.t1 AT5G06510 44.518 301 109 13 29 325 13 259 1.57e-61 197
MS.gene41018.t1 AT3G05690 43.925 321 111 17 27 326 12 284 7.91e-56 184
MS.gene41018.t1 AT5G06510 48.511 235 76 9 93 325 19 210 1.11e-55 181
MS.gene41018.t1 AT3G05690 43.925 321 111 17 27 326 49 321 5.93e-55 182
MS.gene41018.t1 AT5G06510 51.269 197 58 8 131 325 4 164 5.68e-49 162
MS.gene41018.t1 AT5G06510 51.269 197 58 8 131 325 4 164 5.68e-49 162
MS.gene41018.t1 AT2G34720 40.462 173 86 5 97 256 19 187 3.90e-32 119
MS.gene41018.t1 AT1G30500 49.580 119 54 1 127 239 53 171 1.15e-31 117
MS.gene41018.t1 AT1G30500 47.656 128 57 1 122 239 48 175 5.74e-31 115
MS.gene41018.t1 AT2G34720 46.377 138 58 4 132 256 18 152 3.29e-30 113
MS.gene41018.t1 AT2G34720 46.377 138 58 4 132 256 18 152 3.29e-30 113
MS.gene41018.t1 AT5G12840 34.615 286 149 12 1 266 1 268 5.68e-30 115
MS.gene41018.t1 AT5G12840 34.615 286 149 12 1 266 1 268 5.68e-30 115
MS.gene41018.t1 AT1G72830 42.045 176 78 7 132 293 135 300 8.70e-30 116
MS.gene41018.t1 AT5G12840 45.695 151 64 5 127 266 126 269 3.07e-29 113
MS.gene41018.t1 AT5G12840 45.695 151 64 5 127 266 126 269 3.07e-29 113
MS.gene41018.t1 AT5G12840 45.695 151 64 5 127 266 126 269 3.07e-29 113
MS.gene41018.t1 AT1G72830 41.808 177 78 8 132 293 135 301 3.81e-28 112
MS.gene41018.t1 AT1G17590 59.259 81 31 2 143 223 153 231 5.73e-26 105
MS.gene41018.t1 AT1G17590 59.259 81 31 2 143 223 153 231 5.73e-26 105
MS.gene41018.t1 AT1G17590 59.259 81 31 2 143 223 153 231 5.73e-26 105
MS.gene41018.t1 AT1G17590 59.259 81 31 2 143 223 153 231 5.73e-26 105
MS.gene41018.t1 AT1G54160 64.000 75 26 1 149 223 164 237 4.91e-25 103
MS.gene41018.t1 AT3G20910 51.402 107 36 4 133 225 126 230 1.86e-24 101
MS.gene41018.t1 AT3G14020 51.961 102 40 3 132 229 140 236 1.17e-23 99.4
MS.gene41018.t1 AT3G14020 51.961 102 40 3 132 229 140 236 1.17e-23 99.4
MS.gene41018.t1 AT1G72830 38.182 165 75 6 132 293 135 275 1.96e-21 93.2

Find 74 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACGGGCTCTTCTCAACTTA+TGG 0.210491 1.3:+41427007 MS.gene41018:CDS
AACACAAAAGTTTCTGCTAA+TGG 0.270945 1.3:+41427849 MS.gene41018:CDS
CGGATCTACTGTCCACTCTT+TGG 0.272014 1.3:+41428082 MS.gene41018:CDS
GTTGAACAATTGTTTGATAA+AGG 0.289283 1.3:+41426512 MS.gene41018:CDS
TATGGATCTCAACCTGTTTA+TGG 0.294520 1.3:+41426398 MS.gene41018:CDS
TTGGAAAGCTCTAGTGAAAA+AGG 0.317460 1.3:-41426446 None:intergenic
TGACGCGATTCGTGCATATA+TGG 0.329752 1.3:-41427780 None:intergenic
CTGTGCAAAATATCCTTATA+TGG 0.336858 1.3:+41426976 MS.gene41018:CDS
GTATTGTCATGCCAACAAAA+TGG 0.358807 1.3:+41428129 MS.gene41018:CDS
CCGTAAAATTGATCCATATA+AGG 0.372097 1.3:-41426989 None:intergenic
TCATGTTCTTTAAGATAAAC+AGG 0.380584 1.3:-41426308 None:intergenic
ACCTCTGACCCCGAGACGTT+TGG 0.381733 1.3:-41428008 None:intergenic
AGTTCTTACTCGGAGCAATT+TGG 0.382158 1.3:-41426478 None:intergenic
GGATCTACTGTCCACTCTTT+GGG 0.389114 1.3:+41428083 MS.gene41018:CDS
AGCAATTTGGTCTATGTAGT+TGG 0.394015 1.3:-41426465 None:intergenic
TTGGGAGACATGATCGATAC+TGG 0.406979 1.3:+41428101 MS.gene41018:CDS
CAAGACTCTCCGCCATAAAC+AGG 0.413188 1.3:-41426410 None:intergenic
TGCTTAGCATTCACGTATGT+TGG 0.430698 1.3:-41427572 None:intergenic
CATCTGTGACTTCAGCTCCA+TGG 0.437594 1.3:+41426363 MS.gene41018:CDS
AGCTTTACTGTCAATCATAT+CGG 0.452099 1.3:+41428062 MS.gene41018:CDS
GGAGGCAGTCCAAACGTCTC+GGG 0.456102 1.3:+41427999 MS.gene41018:CDS
TTTATTCTGAAGCACAGCTT+TGG 0.466385 1.3:-41427630 None:intergenic
GATAAGGTTGCTTGATGATT+CGG 0.479300 1.3:-41426783 None:intergenic
TGTTAAGATTTACCATAGGC+TGG 0.484839 1.3:-41426860 None:intergenic
ACAAAATGGTTTGCAGCAGC+TGG 0.492247 1.3:+41428143 MS.gene41018:CDS
AAACGACCACCGCATCCTCT+TGG 0.498137 1.3:-41427822 None:intergenic
AAAGTTTCTGCTAATGGAAA+CGG 0.509349 1.3:+41427855 MS.gene41018:CDS
TGGAACTTTAAATTCGTCAA+AGG 0.512980 1.3:+41427968 MS.gene41018:CDS
CCATGGTGGAGTAATGCCTA+TGG 0.514299 1.3:+41426380 MS.gene41018:CDS
AGCAGCTGGTAGACAGCTGC+TGG 0.514662 1.3:+41428157 MS.gene41018:CDS
CCTAGCTCAAAACGGTTAAG+TGG 0.514977 1.3:-41426831 None:intergenic
AATTCGTCAAAGGAGACAAA+CGG 0.518779 1.3:+41427978 MS.gene41018:CDS
TTCGGAACTCTGAGAACCAC+TGG 0.518971 1.3:-41427928 None:intergenic
TCTGCTAATGGAAACGGTAA+AGG 0.520240 1.3:+41427861 MS.gene41018:CDS
CCGAGTAAGAACTTAGTTCG+AGG 0.522823 1.3:+41426488 MS.gene41018:CDS
AACTTATGGACCTCAAATCT+CGG 0.523805 1.3:+41427021 MS.gene41018:CDS
TAAATACAAACCGAGATTTG+AGG 0.527847 1.3:-41427031 None:intergenic
CGGAGGCAGTCCAAACGTCT+CGG 0.528352 1.3:+41427998 MS.gene41018:CDS
GGAAATGTCCACAATTCTGT+TGG 0.536104 1.3:+41426332 MS.gene41018:CDS
GGTGACTAGCATGTATTCAC+AGG 0.537442 1.3:+41428028 MS.gene41018:CDS
CCTCGAACTAAGTTCTTACT+CGG 0.539423 1.3:-41426488 None:intergenic
GGTTAAAACCTAGCTCAAAA+CGG 0.541551 1.3:-41426839 None:intergenic
GGCCTACAGCTGCAGTCCAG+TGG 0.549836 1.3:+41427912 MS.gene41018:CDS
AACCTCAGATTGTAAGACTT+CGG 0.557052 1.3:-41427946 None:intergenic
TTCCGAAGTCTTACAATCTG+AGG 0.557924 1.3:+41427944 MS.gene41018:CDS
AAATGATGATTGCAGTGATA+AGG 0.560313 1.3:-41426799 None:intergenic
TCCAAACGTCTCGGGGTCAG+AGG 0.561807 1.3:+41428007 MS.gene41018:CDS
TCATCAGATGTCATGCTAAG+TGG 0.562219 1.3:-41427545 None:intergenic
AAAACTGTCCAACAGAATTG+TGG 0.562402 1.3:-41426340 None:intergenic
GTTTATCTTAAAGAACATGA+AGG 0.564171 1.3:+41426311 MS.gene41018:CDS
ATAAACAGGTTGAGATCCAT+AGG 0.573638 1.3:-41426396 None:intergenic
GAAGTCTTACAATCTGAGGT+TGG 0.582591 1.3:+41427948 MS.gene41018:CDS
GTTTATGGCGGAGAGTCTTG+TGG 0.587983 1.3:+41426413 MS.gene41018:CDS
CTGTGACTTCAGCTCCATGG+TGG 0.603679 1.3:+41426366 MS.gene41018:CDS
ATGCGTAGACCAAGAGGATG+CGG 0.604666 1.3:+41427813 MS.gene41018:CDS
CGATCATGTCTCCCAAAGAG+TGG 0.606030 1.3:-41428094 None:intergenic
CTAATGGAAACGGTAAAGGC+GGG 0.608350 1.3:+41427865 MS.gene41018:CDS
GAGGCAGTCCAAACGTCTCG+GGG 0.630984 1.3:+41428000 MS.gene41018:CDS
GCTAATGGAAACGGTAAAGG+CGG 0.633457 1.3:+41427864 MS.gene41018:CDS
TAAATTGATAAAGCGTAACA+AGG 0.648504 1.3:+41427649 MS.gene41018:CDS
CCATAGGCATTACTCCACCA+TGG 0.653720 1.3:-41426380 None:intergenic
GACATGATCGATACTGGACA+CGG 0.660565 1.3:+41428107 MS.gene41018:CDS
CTTAGCATGACATCTGATGA+CGG 0.665381 1.3:+41427548 MS.gene41018:CDS
CATGCAATGCGTAGACCAAG+AGG 0.668981 1.3:+41427807 MS.gene41018:CDS
CGTAGACCAAGAGGATGCGG+TGG 0.670871 1.3:+41427816 MS.gene41018:CDS
GTGAATGCTAAGCAATACCA+TGG 0.675463 1.3:+41427581 MS.gene41018:CDS
GGATCTCAACCTGTTTATGG+CGG 0.678188 1.3:+41426401 MS.gene41018:CDS
GTGACTAGCATGTATTCACA+GGG 0.683616 1.3:+41428029 MS.gene41018:CDS
GTCTGCGTCTGATGATACCA+TGG 0.685059 1.3:-41427598 None:intergenic
AACCACTGGACTGCAGCTGT+AGG 0.688049 1.3:-41427914 None:intergenic
AGTGAAGAGAACATAAACAC+TGG 0.692663 1.3:+41427888 MS.gene41018:CDS
GAAGAGAACATAAACACTGG+TGG 0.703232 1.3:+41427891 MS.gene41018:CDS
ACTAGCATGTATTCACAGGG+AGG 0.747620 1.3:+41428032 MS.gene41018:CDS
TCGTCAAAGGAGACAAACGG+AGG 0.770276 1.3:+41427981 MS.gene41018:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATCTATATTTAATAAATT+AGG + chr1.3:41427508-41427527 MS.gene41018:intron 10.0%
!! TAAAAAAAAAATTATGGTTA+AGG + chr1.3:41427286-41427305 MS.gene41018:intron 10.0%
!!! CATCATATAATTCAATTTTA+AGG - chr1.3:41427392-41427411 None:intergenic 15.0%
!! AAATACTAAAACATGATCAA+AGG - chr1.3:41426894-41426913 None:intergenic 20.0%
!! AATACTAAAACATGATCAAA+GGG - chr1.3:41426893-41426912 None:intergenic 20.0%
!! ACCTTAATACATGTATAAAA+AGG - chr1.3:41427742-41427761 None:intergenic 20.0%
!! CCTTAATACATGTATAAAAA+GGG - chr1.3:41427741-41427760 None:intergenic 20.0%
!! TTATGTAACATGATTTATGT+CGG + chr1.3:41426643-41426662 MS.gene41018:intron 20.0%
!! TTATGTACTAAAACATTGAT+TGG - chr1.3:41426920-41426939 None:intergenic 20.0%
!!! ATTTGTTGTTAATGAGTTTT+AGG + chr1.3:41427230-41427249 MS.gene41018:intron 20.0%
!!! CTTGTTATTCAATATAATTC+TGG + chr1.3:41426567-41426586 MS.gene41018:intron 20.0%
!!! TGAATTGATTTTTGTTAAGT+TGG + chr1.3:41426597-41426616 MS.gene41018:intron 20.0%
! GTTGAACAATTGTTTGATAA+AGG + chr1.3:41426512-41426531 MS.gene41018:CDS 25.0%
! GTTTATCTTAAAGAACATGA+AGG + chr1.3:41426311-41426330 MS.gene41018:CDS 25.0%
! TAAATTGATAAAGCGTAACA+AGG + chr1.3:41427649-41427668 MS.gene41018:CDS 25.0%
! TATATTGAATAACAAGTACC+TGG - chr1.3:41426563-41426582 None:intergenic 25.0%
! TGTAGAAGAAAATGTTTGAA+TGG - chr1.3:41426736-41426755 None:intergenic 25.0%
!! CCCTTTTTATACATGTATTA+AGG + chr1.3:41427738-41427757 MS.gene41018:intron 25.0%
!! CCTTATATGGATCAATTTTA+CGG + chr1.3:41426989-41427008 MS.gene41018:CDS 25.0%
!! CTTATATGGATCAATTTTAC+GGG + chr1.3:41426990-41427009 MS.gene41018:CDS 25.0%
!!! GTTTTGTTAAGATTTACCAT+AGG - chr1.3:41426867-41426886 None:intergenic 25.0%
!!! TCATGTTCTTTAAGATAAAC+AGG - chr1.3:41426311-41426330 None:intergenic 25.0%
AAAGTTTCTGCTAATGGAAA+CGG + chr1.3:41427855-41427874 MS.gene41018:CDS 30.0%
AAATGATGATTGCAGTGATA+AGG - chr1.3:41426802-41426821 None:intergenic 30.0%
AACACAAAAGTTTCTGCTAA+TGG + chr1.3:41427849-41427868 MS.gene41018:CDS 30.0%
AACACAGATGAGAAGAAAAT+TGG + chr1.3:41427348-41427367 MS.gene41018:intron 30.0%
AGCTTTACTGTCAATCATAT+CGG + chr1.3:41428062-41428081 MS.gene41018:CDS 30.0%
ATAACAAGTACCTGGAAAAA+TGG - chr1.3:41426555-41426574 None:intergenic 30.0%
CCGTAAAATTGATCCATATA+AGG - chr1.3:41426992-41427011 None:intergenic 30.0%
CTAGTGAAAAAGGTTTCATT+TGG - chr1.3:41426439-41426458 None:intergenic 30.0%
CTGTGCAAAATATCCTTATA+TGG + chr1.3:41426976-41426995 MS.gene41018:CDS 30.0%
GATAGTTGTAAACAGATTTC+TGG - chr1.3:41427161-41427180 None:intergenic 30.0%
TAAATACAAACCGAGATTTG+AGG - chr1.3:41427034-41427053 None:intergenic 30.0%
TGGAACTTTAAATTCGTCAA+AGG + chr1.3:41427968-41427987 MS.gene41018:CDS 30.0%
! AGTTTTCAAACATTGTTGTG+AGG - chr1.3:41427694-41427713 None:intergenic 30.0%
! TGAAGTTTTTGCATGTATTC+AGG + chr1.3:41427422-41427441 MS.gene41018:intron 30.0%
!!! GATTTTTGTTAAGTTGGTTC+TGG + chr1.3:41426603-41426622 MS.gene41018:intron 30.0%
AAAACTGTCCAACAGAATTG+TGG - chr1.3:41426343-41426362 None:intergenic 35.0%
AACCTCAGATTGTAAGACTT+CGG - chr1.3:41427949-41427968 None:intergenic 35.0%
AACTTATGGACCTCAAATCT+CGG + chr1.3:41427021-41427040 MS.gene41018:CDS 35.0%
AAGAAAATGTTTGAATGGCC+AGG - chr1.3:41426731-41426750 None:intergenic 35.0%
AATGATTAAGAAAAGAGCCG+AGG - chr1.3:41427057-41427076 None:intergenic 35.0%
AATTCGTCAAAGGAGACAAA+CGG + chr1.3:41427978-41427997 MS.gene41018:CDS 35.0%
AGCAATTTGGTCTATGTAGT+TGG - chr1.3:41426468-41426487 None:intergenic 35.0%
AGTGAAGAGAACATAAACAC+TGG + chr1.3:41427888-41427907 MS.gene41018:CDS 35.0%
ATCTGCAGCAGATAAACAAA+TGG - chr1.3:41427463-41427482 None:intergenic 35.0%
GGTTAAAACCTAGCTCAAAA+CGG - chr1.3:41426842-41426861 None:intergenic 35.0%
GTATTGTCATGCCAACAAAA+TGG + chr1.3:41428129-41428148 MS.gene41018:CDS 35.0%
TACCTGGAAAAATGGTGAAT+TGG - chr1.3:41426547-41426566 None:intergenic 35.0%
TATGGATCTCAACCTGTTTA+TGG + chr1.3:41426398-41426417 MS.gene41018:CDS 35.0%
TGTTAAGATTTACCATAGGC+TGG - chr1.3:41426863-41426882 None:intergenic 35.0%
! ATAAACAGGTTGAGATCCAT+AGG - chr1.3:41426399-41426418 None:intergenic 35.0%
! ATCTCGGTTTGTATTTACCT+CGG + chr1.3:41427037-41427056 MS.gene41018:intron 35.0%
! GATAAGGTTGCTTGATGATT+CGG - chr1.3:41426786-41426805 None:intergenic 35.0%
! TATTTTGCACAGATCTAGCA+TGG - chr1.3:41426968-41426987 None:intergenic 35.0%
! TTGGAAAGCTCTAGTGAAAA+AGG - chr1.3:41426449-41426468 None:intergenic 35.0%
!! AACCAATTCACCATTTTTCC+AGG + chr1.3:41426542-41426561 MS.gene41018:CDS 35.0%
!! TTTATTCTGAAGCACAGCTT+TGG - chr1.3:41427633-41427652 None:intergenic 35.0%
AGTTCTTACTCGGAGCAATT+TGG - chr1.3:41426481-41426500 None:intergenic 40.0%
CCTCGAACTAAGTTCTTACT+CGG - chr1.3:41426491-41426510 None:intergenic 40.0%
CTTAGCATGACATCTGATGA+CGG + chr1.3:41427548-41427567 MS.gene41018:CDS 40.0%
GAAGAGAACATAAACACTGG+TGG + chr1.3:41427891-41427910 MS.gene41018:CDS 40.0%
GGAAATGTCCACAATTCTGT+TGG + chr1.3:41426332-41426351 MS.gene41018:CDS 40.0%
GTGAATGCTAAGCAATACCA+TGG + chr1.3:41427581-41427600 MS.gene41018:CDS 40.0%
GTGACTAGCATGTATTCACA+GGG + chr1.3:41428029-41428048 MS.gene41018:CDS 40.0%
TCATCAGATGTCATGCTAAG+TGG - chr1.3:41427548-41427567 None:intergenic 40.0%
TCTGCTAATGGAAACGGTAA+AGG + chr1.3:41427861-41427880 MS.gene41018:CDS 40.0%
TGCTTAGCATTCACGTATGT+TGG - chr1.3:41427575-41427594 None:intergenic 40.0%
TTCCGAAGTCTTACAATCTG+AGG + chr1.3:41427944-41427963 MS.gene41018:CDS 40.0%
! CTTTTGAACTTTCCTATGCC+TGG + chr1.3:41426710-41426729 MS.gene41018:intron 40.0%
! GAAGTCTTACAATCTGAGGT+TGG + chr1.3:41427948-41427967 MS.gene41018:CDS 40.0%
!! AAGTTGGTTCTGGCTAAACA+TGG + chr1.3:41426613-41426632 MS.gene41018:intron 40.0%
ACTAGCATGTATTCACAGGG+AGG + chr1.3:41428032-41428051 MS.gene41018:CDS 45.0%
ATGTTTGAATGGCCAGGCAT+AGG - chr1.3:41426725-41426744 None:intergenic 45.0%
CCGAGTAAGAACTTAGTTCG+AGG + chr1.3:41426488-41426507 MS.gene41018:CDS 45.0%
CCTAGCTCAAAACGGTTAAG+TGG - chr1.3:41426834-41426853 None:intergenic 45.0%
CTAATGGAAACGGTAAAGGC+GGG + chr1.3:41427865-41427884 MS.gene41018:CDS 45.0%
GACATGATCGATACTGGACA+CGG + chr1.3:41428107-41428126 MS.gene41018:CDS 45.0%
GCTAATGGAAACGGTAAAGG+CGG + chr1.3:41427864-41427883 MS.gene41018:CDS 45.0%
GGATCTACTGTCCACTCTTT+GGG + chr1.3:41428083-41428102 MS.gene41018:CDS 45.0%
GGATCTCAACCTGTTTATGG+CGG + chr1.3:41426401-41426420 MS.gene41018:CDS 45.0%
GGTGACTAGCATGTATTCAC+AGG + chr1.3:41428028-41428047 MS.gene41018:CDS 45.0%
TACGGGCTCTTCTCAACTTA+TGG + chr1.3:41427007-41427026 MS.gene41018:CDS 45.0%
TGACGCGATTCGTGCATATA+TGG - chr1.3:41427783-41427802 None:intergenic 45.0%
TGCACAGATCTAGCATGGAA+AGG - chr1.3:41426963-41426982 None:intergenic 45.0%
TTGGGAGACATGATCGATAC+TGG + chr1.3:41428101-41428120 MS.gene41018:CDS 45.0%
! ACAAAATGGTTTGCAGCAGC+TGG + chr1.3:41428143-41428162 MS.gene41018:CDS 45.0%
! GCTGCTGCAAACCATTTTGT+TGG - chr1.3:41428143-41428162 None:intergenic 45.0%
!! CCACTTAACCGTTTTGAGCT+AGG + chr1.3:41426831-41426850 MS.gene41018:CDS 45.0%
!! GCTAGGTTTTAACCAGCCTA+TGG + chr1.3:41426848-41426867 MS.gene41018:CDS 45.0%
!! ATGAAATAAAAAAAAAATTA+TGG + chr1.3:41427280-41427299 MS.gene41018:intron 5.0%
!! TATCTATATTTAATAAATTA+GGG + chr1.3:41427509-41427528 MS.gene41018:intron 5.0%
ATGCGTAGACCAAGAGGATG+CGG + chr1.3:41427813-41427832 MS.gene41018:CDS 50.0%
CAAGACTCTCCGCCATAAAC+AGG - chr1.3:41426413-41426432 None:intergenic 50.0%
CATCTGTGACTTCAGCTCCA+TGG + chr1.3:41426363-41426382 MS.gene41018:CDS 50.0%
CATGCAATGCGTAGACCAAG+AGG + chr1.3:41427807-41427826 MS.gene41018:CDS 50.0%
CCATAGGCATTACTCCACCA+TGG - chr1.3:41426383-41426402 None:intergenic 50.0%
CGATCATGTCTCCCAAAGAG+TGG - chr1.3:41428097-41428116 None:intergenic 50.0%
CGGATCTACTGTCCACTCTT+TGG + chr1.3:41428082-41428101 MS.gene41018:CDS 50.0%
GTCTGCGTCTGATGATACCA+TGG - chr1.3:41427601-41427620 None:intergenic 50.0%
TCGTCAAAGGAGACAAACGG+AGG + chr1.3:41427981-41428000 MS.gene41018:CDS 50.0%
! CCATGGTGGAGTAATGCCTA+TGG + chr1.3:41426380-41426399 MS.gene41018:CDS 50.0%
! GTTTATGGCGGAGAGTCTTG+TGG + chr1.3:41426413-41426432 MS.gene41018:CDS 50.0%
! TTCGGAACTCTGAGAACCAC+TGG - chr1.3:41427931-41427950 None:intergenic 50.0%
AAACGACCACCGCATCCTCT+TGG - chr1.3:41427825-41427844 None:intergenic 55.0%
AACCACTGGACTGCAGCTGT+AGG - chr1.3:41427917-41427936 None:intergenic 55.0%
CTGTGACTTCAGCTCCATGG+TGG + chr1.3:41426366-41426385 MS.gene41018:CDS 55.0%
ACCTCTGACCCCGAGACGTT+TGG - chr1.3:41428011-41428030 None:intergenic 60.0%
AGCAGCTGGTAGACAGCTGC+TGG + chr1.3:41428157-41428176 MS.gene41018:CDS 60.0%
CGGAGGCAGTCCAAACGTCT+CGG + chr1.3:41427998-41428017 MS.gene41018:CDS 60.0%
CGTAGACCAAGAGGATGCGG+TGG + chr1.3:41427816-41427835 MS.gene41018:CDS 60.0%
GAGGCAGTCCAAACGTCTCG+GGG + chr1.3:41428000-41428019 MS.gene41018:CDS 60.0%
GGAGGCAGTCCAAACGTCTC+GGG + chr1.3:41427999-41428018 MS.gene41018:CDS 60.0%
TCCAAACGTCTCGGGGTCAG+AGG + chr1.3:41428007-41428026 MS.gene41018:CDS 60.0%
GGCCTACAGCTGCAGTCCAG+TGG + chr1.3:41427912-41427931 MS.gene41018:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 41426296 41428187 41426296 ID=MS.gene41018
chr1.3 mRNA 41426296 41428187 41426296 ID=MS.gene41018.t1;Parent=MS.gene41018
chr1.3 exon 41426296 41426563 41426296 ID=MS.gene41018.t1.exon1;Parent=MS.gene41018.t1
chr1.3 CDS 41426296 41426563 41426296 ID=cds.MS.gene41018.t1;Parent=MS.gene41018.t1
chr1.3 exon 41426757 41426869 41426757 ID=MS.gene41018.t1.exon2;Parent=MS.gene41018.t1
chr1.3 CDS 41426757 41426869 41426757 ID=cds.MS.gene41018.t1;Parent=MS.gene41018.t1
chr1.3 exon 41426974 41427042 41426974 ID=MS.gene41018.t1.exon3;Parent=MS.gene41018.t1
chr1.3 CDS 41426974 41427042 41426974 ID=cds.MS.gene41018.t1;Parent=MS.gene41018.t1
chr1.3 exon 41427530 41427670 41427530 ID=MS.gene41018.t1.exon4;Parent=MS.gene41018.t1
chr1.3 CDS 41427530 41427670 41427530 ID=cds.MS.gene41018.t1;Parent=MS.gene41018.t1
chr1.3 exon 41427780 41428187 41427780 ID=MS.gene41018.t1.exon5;Parent=MS.gene41018.t1
chr1.3 CDS 41427780 41428187 41427780 ID=cds.MS.gene41018.t1;Parent=MS.gene41018.t1
Gene Sequence

>MS.gene41018

ATGGCTATGCAACCTGTTTATCTTAAAGAACATGAAGGAAATGTCCACAATTCTGTTGGACAGTTTTCATCTGTGACTTCAGCTCCATGGTGGAGTAATGCCTATGGATCTCAACCTGTTTATGGCGGAGAGTCTTGTGGCCAAATGAAACCTTTTTCACTAGAGCTTTCCAACTACATAGACCAAATTGCTCCGAGTAAGAACTTAGTTCGAGGAGTTGAACAATTGTTTGATAAAGGACATACAAACCAATTCACCATTTTTCCAGGTACTTGTTATTCAATATAATTCTGGTTTTGAATGAATTGATTTTTGTTAAGTTGGTTCTGGCTAAACATGGATACGTTTTATGTAACATGATTTATGTCGGATACGTTTATGTAAAAGTGAGTTGAACATAAATTGTCATTTGAACTTTTGAACTTTCCTATGCCTGGCCATTCAAACATTTTCTTCTACAGATGATTGTAAGATGTCAGTTGATACACCGAATCATCAAGCAACCTTATCACTGCAATCATCATTTGCTGCTGAGCCACTTAACCGTTTTGAGCTAGGTTTTAACCAGCCTATGGTAAATCTTAACAAAACAATCCCTTTGATCATGTTTTAGTATTTTAACCAATCAATGTTTTAGTACATAAATTCATTATGTTTTTATTATCCTTTCCATGCTAGATCTGTGCAAAATATCCTTATATGGATCAATTTTACGGGCTCTTCTCAACTTATGGACCTCAAATCTCGGTTTGTATTTACCTCGGCTCTTTTCTTAATCATTGTATATATCATGCAGTGTCTATAAGTACTTGAATGTGAATTTGTTTTATTTTTGTACAGTGTATATGCTTACATGAGAAAGCCAGAAATCTGTTTACAACTATCTTGTTAGTATTCTTTTAAATCTTTCAAATGTAATAGAGTTGATTATGAAATTTGTTGTTAATGAGTTTTAGGCTTTATGAATGAATTGTAAGACAAGCAATGAAATAAAAAAAAAATTATGGTTAAGGATGTAAAGTGTGACAATATTAAGTTAGTATTATGATTTAAACACAGATGAGAAGAAAATTGGAGTGCAGTGAACTTATAGCCTTAAAATTGAATTATATGATGCAATCTGTGTTGAAGTTTTTGCATGTATTCAGGTTCTGCTTTTAGTTACCATTTGTTTATCTGCTGCAGATATTTCATCAATTATTATTCATTTATGTATCTATATTTAATAAATTAGGGACGTGTTATGCTTCCACTTAGCATGACATCTGATGACGGACCAACATACGTGAATGCTAAGCAATACCATGGTATCATCAGACGCAGACATTCTCGTGCCAAAGCTGTGCTTCAGAATAAATTGATAAAGCGTAACAAGGTATGAAACTGAGTATTTTTCCTCACAACAATGTTTGAAAACTTGTGAAATAGTATTTTTCATTCTACCCTTTTTATACATGTATTAAGGTTTTGTATTTGTCTTGCAGCCATATATGCACGAATCGCGTCATCTACATGCAATGCGTAGACCAAGAGGATGCGGTGGTCGTTTCTTGAACACAAAAGTTTCTGCTAATGGAAACGGTAAAGGCGGGAGTGAAGAGAACATAAACACTGGTGGCCTACAGCTGCAGTCCAGTGGTTCTCAGAGTTCCGAAGTCTTACAATCTGAGGTTGGAACTTTAAATTCGTCAAAGGAGACAAACGGAGGCAGTCCAAACGTCTCGGGGTCAGAGGTGACTAGCATGTATTCACAGGGAGGTCTTGATAGCTTTACTGTCAATCATATCGGATCTACTGTCCACTCTTTGGGAGACATGATCGATACTGGACACGGTATTGTCATGCCAACAAAATGGTTTGCAGCAGCTGGTAGACAGCTGCTGGAACCATAA
Protein sequence

>MS.gene41018.t1

MAMQPVYLKEHEGNVHNSVGQFSSVTSAPWWSNAYGSQPVYGGESCGQMKPFSLELSNYIDQIAPSKNLVRGVEQLFDKGHTNQFTIFPDDCKMSVDTPNHQATLSLQSSFAAEPLNRFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRVMLPLSMTSDDGPTYVNAKQYHGIIRRRHSRAKAVLQNKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKVSANGNGKGGSEENINTGGLQLQSSGSQSSEVLQSEVGTLNSSKETNGGSPNVSGSEVTSMYSQGGLDSFTVNHIGSTVHSLGDMIDTGHGIVMPTKWFAAAGRQLLEP