AlfalfaGEDB | MS.gene41018

M. sativa cultivar XinJiangDaYe / MS.gene41018

KEGG: K08064
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02045.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41018.t1	XP_003590326.1	97	332	10	0	1	332	1	332	4.70E-184	653.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41018.t1	Q8LFU0	44.1	306	113	13	24	325	8	259	1.5e-45	184.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41018.t1	G7I8J1	97.0	332	10	0	1	332	1	332	3.4e-184	653.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene41018.t1	TF	NF-YA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene007115	MS.gene41018	PPI
MS.gene034730	MS.gene41018	PPI
MS.gene23087	MS.gene41018	PPI
MS.gene41018	MS.gene46438	PPI
MS.gene41018	MS.gene26493	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41018.t1	MTR_1g056530	96.988	332	10	0	1	332	1	332	0.0	674
MS.gene41018.t1	MTR_7g106450	71.125	329	86	6	1	324	1	325	1.45e-162	457
MS.gene41018.t1	MTR_8g037270	50.400	125	49	4	128	241	109	231	9.07e-30	115
MS.gene41018.t1	MTR_2g041090	49.624	133	49	4	116	231	14	145	1.97e-29	113
MS.gene41018.t1	MTR_2g030170	50.467	107	51	1	133	237	80	186	2.74e-28	109
MS.gene41018.t1	MTR_3g061510	49.167	120	45	4	127	232	125	242	3.90e-27	109
MS.gene41018.t1	MTR_2g030170	56.627	83	36	0	155	237	137	219	4.57e-27	107
MS.gene41018.t1	MTR_3g061510	49.167	120	45	4	127	232	145	262	5.21e-27	109
MS.gene41018.t1	MTR_8g019540	47.414	116	46	4	120	222	110	223	6.48e-26	105
MS.gene41018.t1	MTR_2g099490	44.118	136	67	4	134	260	134	269	7.97e-25	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41018.t1	AT5G06510	44.518	301	109	13	29	325	13	259	1.57e-61	197
MS.gene41018.t1	AT5G06510	44.518	301	109	13	29	325	13	259	1.57e-61	197
MS.gene41018.t1	AT5G06510	44.518	301	109	13	29	325	13	259	1.57e-61	197
MS.gene41018.t1	AT5G06510	44.518	301	109	13	29	325	13	259	1.57e-61	197
MS.gene41018.t1	AT3G05690	43.925	321	111	17	27	326	12	284	7.91e-56	184
MS.gene41018.t1	AT5G06510	48.511	235	76	9	93	325	19	210	1.11e-55	181
MS.gene41018.t1	AT3G05690	43.925	321	111	17	27	326	49	321	5.93e-55	182
MS.gene41018.t1	AT5G06510	51.269	197	58	8	131	325	4	164	5.68e-49	162
MS.gene41018.t1	AT5G06510	51.269	197	58	8	131	325	4	164	5.68e-49	162
MS.gene41018.t1	AT2G34720	40.462	173	86	5	97	256	19	187	3.90e-32	119

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Find 74 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTCCAACAGAATTG+TGG	0.562402	1.3:-41426340	None:intergenic
AAACGACCACCGCATCCTCT+TGG	0.498137	1.3:-41427822	None:intergenic
AAAGTTTCTGCTAATGGAAA+CGG	0.509349	1.3:+41427855	MS.gene41018:CDS
AAATGATGATTGCAGTGATA+AGG	0.560313	1.3:-41426799	None:intergenic
AACACAAAAGTTTCTGCTAA+TGG	0.270945	1.3:+41427849	MS.gene41018:CDS
AACCACTGGACTGCAGCTGT+AGG	0.688049	1.3:-41427914	None:intergenic
AACCTCAGATTGTAAGACTT+CGG	0.557052	1.3:-41427946	None:intergenic
AACTTATGGACCTCAAATCT+CGG	0.523805	1.3:+41427021	MS.gene41018:CDS
AATTCGTCAAAGGAGACAAA+CGG	0.518779	1.3:+41427978	MS.gene41018:CDS
ACAAAATGGTTTGCAGCAGC+TGG	0.492247	1.3:+41428143	MS.gene41018:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTTCTGCTAATGGAAA+CGG	+	chr1.3:41427855-41427874	MS.gene41018:CDS	30.0%
AAATGATGATTGCAGTGATA+AGG	-	chr1.3:41426802-41426821	None:intergenic	30.0%
AACACAAAAGTTTCTGCTAA+TGG	+	chr1.3:41427849-41427868	MS.gene41018:CDS	30.0%
AACACAGATGAGAAGAAAAT+TGG	+	chr1.3:41427348-41427367	MS.gene41018:intron	30.0%
AGCTTTACTGTCAATCATAT+CGG	+	chr1.3:41428062-41428081	MS.gene41018:CDS	30.0%
ATAACAAGTACCTGGAAAAA+TGG	-	chr1.3:41426555-41426574	None:intergenic	30.0%
CCGTAAAATTGATCCATATA+AGG	-	chr1.3:41426992-41427011	None:intergenic	30.0%
CTAGTGAAAAAGGTTTCATT+TGG	-	chr1.3:41426439-41426458	None:intergenic	30.0%
CTGTGCAAAATATCCTTATA+TGG	+	chr1.3:41426976-41426995	MS.gene41018:CDS	30.0%
GATAGTTGTAAACAGATTTC+TGG	-	chr1.3:41427161-41427180	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	41426296	41428187	41426296	ID=MS.gene41018
chr1.3	mRNA	41426296	41428187	41426296	ID=MS.gene41018.t1;Parent=MS.gene41018
chr1.3	exon	41426296	41426563	41426296	ID=MS.gene41018.t1.exon1;Parent=MS.gene41018.t1
chr1.3	CDS	41426296	41426563	41426296	ID=cds.MS.gene41018.t1;Parent=MS.gene41018.t1
chr1.3	exon	41426757	41426869	41426757	ID=MS.gene41018.t1.exon2;Parent=MS.gene41018.t1
chr1.3	CDS	41426757	41426869	41426757	ID=cds.MS.gene41018.t1;Parent=MS.gene41018.t1
chr1.3	exon	41426974	41427042	41426974	ID=MS.gene41018.t1.exon3;Parent=MS.gene41018.t1
chr1.3	CDS	41426974	41427042	41426974	ID=cds.MS.gene41018.t1;Parent=MS.gene41018.t1
chr1.3	exon	41427530	41427670	41427530	ID=MS.gene41018.t1.exon4;Parent=MS.gene41018.t1
chr1.3	CDS	41427530	41427670	41427530	ID=cds.MS.gene41018.t1;Parent=MS.gene41018.t1
chr1.3	exon	41427780	41428187	41427780	ID=MS.gene41018.t1.exon5;Parent=MS.gene41018.t1
chr1.3	CDS	41427780	41428187	41427780	ID=cds.MS.gene41018.t1;Parent=MS.gene41018.t1

Gene Sequence

>MS.gene41018

ATGGCTATGCAACCTGTTTATCTTAAAGAACATGAAGGAAATGTCCACAATTCTGTTGGACAGTTTTCATCTGTGACTTCAGCTCCATGGTGGAGTAATGCCTATGGATCTCAACCTGTTTATGGCGGAGAGTCTTGTGGCCAAATGAAACCTTTTTCACTAGAGCTTTCCAACTACATAGACCAAATTGCTCCGAGTAAGAACTTAGTTCGAGGAGTTGAACAATTGTTTGATAAAGGACATACAAACCAATTCACCATTTTTCCAGGTACTTGTTATTCAATATAATTCTGGTTTTGAATGAATTGATTTTTGTTAAGTTGGTTCTGGCTAAACATGGATACGTTTTATGTAACATGATTTATGTCGGATACGTTTATGTAAAAGTGAGTTGAACATAAATTGTCATTTGAACTTTTGAACTTTCCTATGCCTGGCCATTCAAACATTTTCTTCTACAGATGATTGTAAGATGTCAGTTGATACACCGAATCATCAAGCAACCTTATCACTGCAATCATCATTTGCTGCTGAGCCACTTAACCGTTTTGAGCTAGGTTTTAACCAGCCTATGGTAAATCTTAACAAAACAATCCCTTTGATCATGTTTTAGTATTTTAACCAATCAATGTTTTAGTACATAAATTCATTATGTTTTTATTATCCTTTCCATGCTAGATCTGTGCAAAATATCCTTATATGGATCAATTTTACGGGCTCTTCTCAACTTATGGACCTCAAATCTCGGTTTGTATTTACCTCGGCTCTTTTCTTAATCATTGTATATATCATGCAGTGTCTATAAGTACTTGAATGTGAATTTGTTTTATTTTTGTACAGTGTATATGCTTACATGAGAAAGCCAGAAATCTGTTTACAACTATCTTGTTAGTATTCTTTTAAATCTTTCAAATGTAATAGAGTTGATTATGAAATTTGTTGTTAATGAGTTTTAGGCTTTATGAATGAATTGTAAGACAAGCAATGAAATAAAAAAAAAATTATGGTTAAGGATGTAAAGTGTGACAATATTAAGTTAGTATTATGATTTAAACACAGATGAGAAGAAAATTGGAGTGCAGTGAACTTATAGCCTTAAAATTGAATTATATGATGCAATCTGTGTTGAAGTTTTTGCATGTATTCAGGTTCTGCTTTTAGTTACCATTTGTTTATCTGCTGCAGATATTTCATCAATTATTATTCATTTATGTATCTATATTTAATAAATTAGGGACGTGTTATGCTTCCACTTAGCATGACATCTGATGACGGACCAACATACGTGAATGCTAAGCAATACCATGGTATCATCAGACGCAGACATTCTCGTGCCAAAGCTGTGCTTCAGAATAAATTGATAAAGCGTAACAAGGTATGAAACTGAGTATTTTTCCTCACAACAATGTTTGAAAACTTGTGAAATAGTATTTTTCATTCTACCCTTTTTATACATGTATTAAGGTTTTGTATTTGTCTTGCAGCCATATATGCACGAATCGCGTCATCTACATGCAATGCGTAGACCAAGAGGATGCGGTGGTCGTTTCTTGAACACAAAAGTTTCTGCTAATGGAAACGGTAAAGGCGGGAGTGAAGAGAACATAAACACTGGTGGCCTACAGCTGCAGTCCAGTGGTTCTCAGAGTTCCGAAGTCTTACAATCTGAGGTTGGAACTTTAAATTCGTCAAAGGAGACAAACGGAGGCAGTCCAAACGTCTCGGGGTCAGAGGTGACTAGCATGTATTCACAGGGAGGTCTTGATAGCTTTACTGTCAATCATATCGGATCTACTGTCCACTCTTTGGGAGACATGATCGATACTGGACACGGTATTGTCATGCCAACAAAATGGTTTGCAGCAGCTGGTAGACAGCTGCTGGAACCATAA

Protein sequence

>MS.gene41018.t1

MAMQPVYLKEHEGNVHNSVGQFSSVTSAPWWSNAYGSQPVYGGESCGQMKPFSLELSNYIDQIAPSKNLVRGVEQLFDKGHTNQFTIFPDDCKMSVDTPNHQATLSLQSSFAAEPLNRFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRVMLPLSMTSDDGPTYVNAKQYHGIIRRRHSRAKAVLQNKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKVSANGNGKGGSEENINTGGLQLQSSGSQSSEVLQSEVGTLNSSKETNGGSPNVSGSEVTSMYSQGGLDSFTVNHIGSTVHSLGDMIDTGHGIVMPTKWFAAAGRQLLEP