AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034730.t1 MTR_1g056530 97.289 332 9 0 1 332 1 332 0.0 678
MS.gene034730.t1 MTR_7g106450 70.821 329 87 6 1 324 1 325 1.15e-162 457
MS.gene034730.t1 MTR_8g037270 50.400 125 49 4 128 241 109 231 3.30e-30 116
MS.gene034730.t1 MTR_2g041090 49.624 133 49 4 116 231 14 145 1.99e-29 113
MS.gene034730.t1 MTR_2g030170 49.091 110 54 1 133 240 80 189 1.51e-28 110
MS.gene034730.t1 MTR_2g030170 54.651 86 39 0 155 240 137 222 2.43e-27 107
MS.gene034730.t1 MTR_3g061510 45.833 144 60 4 127 259 125 261 3.67e-27 109
MS.gene034730.t1 MTR_3g061510 45.833 144 60 4 127 259 145 281 4.39e-27 109
MS.gene034730.t1 MTR_8g019540 47.414 116 46 4 120 222 110 223 7.70e-26 105
MS.gene034730.t1 MTR_2g099490 54.082 98 37 3 134 223 134 231 1.55e-24 102
MS.gene034730.t1 MTR_2g099490 41.844 141 69 4 95 223 108 247 2.76e-24 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034730.t1 AT5G06510 44.518 301 109 13 29 325 13 259 1.67e-61 197
MS.gene034730.t1 AT5G06510 44.518 301 109 13 29 325 13 259 1.67e-61 197
MS.gene034730.t1 AT5G06510 44.518 301 109 13 29 325 13 259 1.67e-61 197
MS.gene034730.t1 AT5G06510 44.518 301 109 13 29 325 13 259 1.67e-61 197
MS.gene034730.t1 AT3G05690 44.237 321 110 17 27 326 12 284 1.08e-56 186
MS.gene034730.t1 AT3G05690 44.237 321 110 17 27 326 49 321 8.04e-56 185
MS.gene034730.t1 AT5G06510 48.511 235 76 9 93 325 19 210 9.86e-56 181
MS.gene034730.t1 AT5G06510 51.269 197 58 8 131 325 4 164 7.84e-49 162
MS.gene034730.t1 AT5G06510 51.269 197 58 8 131 325 4 164 7.84e-49 162
MS.gene034730.t1 AT1G30500 50.420 119 53 1 127 239 53 171 1.68e-32 119
MS.gene034730.t1 AT2G34720 40.462 173 86 5 97 256 19 187 2.67e-32 119
MS.gene034730.t1 AT1G30500 49.593 123 52 1 127 239 53 175 8.92e-32 118
MS.gene034730.t1 AT2G34720 46.377 138 58 4 132 256 18 152 1.62e-30 114
MS.gene034730.t1 AT2G34720 46.377 138 58 4 132 256 18 152 1.62e-30 114
MS.gene034730.t1 AT1G72830 42.515 167 74 6 132 284 135 293 7.31e-30 117
MS.gene034730.t1 AT5G12840 34.495 287 148 13 1 266 1 268 5.54e-29 112
MS.gene034730.t1 AT5G12840 34.495 287 148 13 1 266 1 268 5.54e-29 112
MS.gene034730.t1 AT5G12840 45.395 152 63 6 127 266 126 269 2.38e-28 111
MS.gene034730.t1 AT5G12840 45.395 152 63 6 127 266 126 269 2.38e-28 111
MS.gene034730.t1 AT5G12840 45.395 152 63 6 127 266 126 269 2.38e-28 111
MS.gene034730.t1 AT1G72830 42.262 168 74 7 132 284 135 294 2.84e-28 112
MS.gene034730.t1 AT1G17590 59.259 81 31 2 143 223 153 231 5.67e-26 105
MS.gene034730.t1 AT1G17590 59.259 81 31 2 143 223 153 231 5.67e-26 105
MS.gene034730.t1 AT1G17590 59.259 81 31 2 143 223 153 231 5.67e-26 105
MS.gene034730.t1 AT1G17590 59.259 81 31 2 143 223 153 231 5.67e-26 105
MS.gene034730.t1 AT1G54160 64.000 75 26 1 149 223 164 237 4.62e-25 103
MS.gene034730.t1 AT3G20910 46.610 118 50 3 133 239 126 241 7.27e-25 102
MS.gene034730.t1 AT3G14020 51.961 102 40 3 132 229 140 236 1.08e-23 99.4
MS.gene034730.t1 AT3G14020 51.961 102 40 3 132 229 140 236 1.08e-23 99.4
MS.gene034730.t1 AT1G72830 38.462 156 71 5 132 284 135 268 1.58e-21 93.6

Find 79 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGATCTCAACCTGTTTA+TGG 0.217575 1.1:+43878148 MS.gene034730:CDS
TACGGGCTCTTCTCGACTTA+TGG 0.224539 1.1:+43878740 MS.gene034730:CDS
GGAGGCAGTCCAAACGTTTC+GGG 0.260952 1.1:+43879761 MS.gene034730:CDS
AACACAAAAGTTTCTGCTAA+TGG 0.270945 1.1:+43879611 MS.gene034730:CDS
CGGATCTACTGTCCACTCTT+TGG 0.272014 1.1:+43879844 MS.gene034730:CDS
GTTGAACAATTGTTTGATAA+AGG 0.289283 1.1:+43878262 MS.gene034730:CDS
TTGGAAAGCTCTAGTGAAAA+AGG 0.317460 1.1:-43878196 None:intergenic
TGACGCGATTCGTGCATATA+TGG 0.329752 1.1:-43879542 None:intergenic
CTGTGCAAAATATCCTTATA+TGG 0.336858 1.1:+43878709 MS.gene034730:CDS
CGGAGGCAGTCCAAACGTTT+CGG 0.357133 1.1:+43879760 MS.gene034730:CDS
AGCAGCTGGCAGACAGCTGC+TGG 0.368112 1.1:+43879919 MS.gene034730:CDS
CCGTAAAATTGATCCATATA+AGG 0.372097 1.1:-43878722 None:intergenic
AACCAATTCACCATCTTTCC+AGG 0.379219 1.1:+43878292 MS.gene034730:CDS
TCATGTTCTTTAAGATAAAC+AGG 0.380584 1.1:-43878058 None:intergenic
GGATCTACTGTCCACTCTTT+GGG 0.389114 1.1:+43879845 MS.gene034730:CDS
ACCTCTGACCCCGAAACGTT+TGG 0.396649 1.1:-43879770 None:intergenic
TTGGGAGACATGATCGATAC+TGG 0.406979 1.1:+43879863 MS.gene034730:CDS
GTATCGTCATGCCAACAAAA+TGG 0.414096 1.1:+43879891 MS.gene034730:CDS
AACTTTACTGTCAATCATAT+CGG 0.418865 1.1:+43879824 MS.gene034730:CDS
TACCTGGAAAGATGGTGAAT+TGG 0.421188 1.1:-43878294 None:intergenic
AGCAATTTGATCTATGTAGT+TGG 0.421523 1.1:-43878215 None:intergenic
TGCTTAGCATTCACGTATGT+TGG 0.430698 1.1:-43879331 None:intergenic
CAAGACTCTCCTCCATAAAC+AGG 0.453464 1.1:-43878160 None:intergenic
ACAAAATGGTTTGCAGCAGC+TGG 0.453794 1.1:+43879905 MS.gene034730:CDS
TTTATTCTGAAGCACAGCTT+TGG 0.466795 1.1:-43879389 None:intergenic
GATAAGGTTGCTTGATGATT+CGG 0.479300 1.1:-43878521 None:intergenic
AAACGACCACCGCATCCTCT+TGG 0.498137 1.1:-43879584 None:intergenic
TAAGAAGATTTACCATAGGC+TGG 0.500852 1.1:-43878598 None:intergenic
AAAGTTTCTGCTAATGGAAA+CGG 0.509349 1.1:+43879617 MS.gene034730:CDS
AGCAATACCATGGAATCATC+AGG 0.511718 1.1:+43879350 MS.gene034730:CDS
TGGAACTTTAAATTCGTCAA+AGG 0.512980 1.1:+43879730 MS.gene034730:CDS
CCATGGTGGAGTAATGCCTA+TGG 0.516782 1.1:+43878130 MS.gene034730:CDS
CCTAGCTCAAAACGATTAAG+TGG 0.518018 1.1:-43878569 None:intergenic
AATTCGTCAAAGGAGACAAA+CGG 0.518779 1.1:+43879740 MS.gene034730:CDS
TTCGGAACTCTGAGAACCAC+TGG 0.518971 1.1:-43879690 None:intergenic
CCGAGTAAGAACTTAGTTCG+AGG 0.522823 1.1:+43878238 MS.gene034730:CDS
GCTAATGGAAACGGTAAAAG+CGG 0.528506 1.1:+43879626 MS.gene034730:CDS
GGAAATGTCCACAATTCTGT+TGG 0.536104 1.1:+43878082 MS.gene034730:CDS
GGTGACTAGCATGTATTCAC+AGG 0.537442 1.1:+43879790 MS.gene034730:CDS
GACTTATGGACCTCAAATCT+CGG 0.538137 1.1:+43878754 MS.gene034730:CDS
CCTCGAACTAAGTTCTTACT+CGG 0.539423 1.1:-43878238 None:intergenic
ATAACAAGTACCTGGAAAGA+TGG 0.540599 1.1:-43878302 None:intergenic
CTCAAAACGATTAAGTGGCT+CGG 0.547492 1.1:-43878564 None:intergenic
TAAAGACAAACCGAGATTTG+AGG 0.547890 1.1:-43878764 None:intergenic
GGCCTACAGCTGCAGTCCAG+TGG 0.549836 1.1:+43879674 MS.gene034730:CDS
GCTAGGGTTTAACCAGCCTA+TGG 0.550177 1.1:+43878586 MS.gene034730:CDS
ATAAACAGGTTGAGATCCAT+AGG 0.553524 1.1:-43878146 None:intergenic
AACCTCAGATTGTAAGACTT+CGG 0.557052 1.1:-43879708 None:intergenic
TTCCGAAGTCTTACAATCTG+AGG 0.557924 1.1:+43879706 MS.gene034730:CDS
AAATGATGATTGCAGTGATA+AGG 0.560313 1.1:-43878537 None:intergenic
TCATCAGATGTCATGCTAAG+TGG 0.562219 1.1:-43879304 None:intergenic
AAAACTGTCCAACAGAATTG+TGG 0.562402 1.1:-43878090 None:intergenic
GTTTATCTTAAAGAACATGA+AGG 0.564171 1.1:+43878061 MS.gene034730:CDS
CTAATGGAAACGGTAAAAGC+GGG 0.566129 1.1:+43879627 MS.gene034730:CDS
TCCAAACGTTTCGGGGTCAG+AGG 0.574350 1.1:+43879769 MS.gene034730:CDS
CATCTGTGACTTCAGCACCA+TGG 0.577095 1.1:+43878113 MS.gene034730:CDS
GAAGTCTTACAATCTGAGGT+TGG 0.582591 1.1:+43879710 MS.gene034730:CDS
GCCTGCGCCTGATGATTCCA+TGG 0.599554 1.1:-43879357 None:intergenic
ATGCGTAGACCAAGAGGATG+CGG 0.604666 1.1:+43879575 MS.gene034730:CDS
CGATCATGTCTCCCAAAGAG+TGG 0.606030 1.1:-43879856 None:intergenic
AGTGAAGAGAACGGAAACAC+TGG 0.615604 1.1:+43879650 MS.gene034730:CDS
ACCATGGAATCATCAGGCGC+AGG 0.620559 1.1:+43879356 MS.gene034730:CDS
GTTTATGGAGGAGAGTCTTG+TGG 0.624514 1.1:+43878163 MS.gene034730:CDS
GTGAATGCTAAGCAATACCA+TGG 0.633070 1.1:+43879340 MS.gene034730:CDS
GAGGCAGTCCAAACGTTTCG+GGG 0.649488 1.1:+43879762 MS.gene034730:CDS
GGATCTCAACCTGTTTATGG+AGG 0.650456 1.1:+43878151 MS.gene034730:CDS
TAAACTGATAAAGCGTAACA+AGG 0.655532 1.1:+43879408 MS.gene034730:CDS
GACATGATCGATACTGGACA+CGG 0.660565 1.1:+43879869 MS.gene034730:CDS
CTTAGCATGACATCTGATGA+CGG 0.665381 1.1:+43879307 MS.gene034730:CDS
CATGCAATGCGTAGACCAAG+AGG 0.668981 1.1:+43879569 MS.gene034730:CDS
CGTAGACCAAGAGGATGCGG+TGG 0.670871 1.1:+43879578 MS.gene034730:CDS
CTGTGACTTCAGCACCATGG+TGG 0.675777 1.1:+43878116 MS.gene034730:CDS
GTGACTAGCATGTATTCACA+GGG 0.683616 1.1:+43879791 MS.gene034730:CDS
GAAGAGAACGGAAACACTGG+TGG 0.687042 1.1:+43879653 MS.gene034730:CDS
AACCACTGGACTGCAGCTGT+AGG 0.688049 1.1:-43879676 None:intergenic
CCATAGGCATTACTCCACCA+TGG 0.694421 1.1:-43878130 None:intergenic
AAAAGCGGGAGTGAAGAGAA+CGG 0.720944 1.1:+43879641 MS.gene034730:CDS
ACTAGCATGTATTCACAGGG+AGG 0.747620 1.1:+43879794 MS.gene034730:CDS
TCGTCAAAGGAGACAAACGG+AGG 0.770276 1.1:+43879743 MS.gene034730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAGTAAAGAAATTA+TGG + chr1.1:43879039-43879058 MS.gene034730:intron 10.0%
!! GTATCTATATTTAATAAATT+AGG + chr1.1:43879267-43879286 MS.gene034730:intron 10.0%
!!! CATCATATAATTCAATTTTA+AGG - chr1.1:43879151-43879170 None:intergenic 15.0%
!! AAGTAAAGAAATTATGGTTA+AGG + chr1.1:43879045-43879064 MS.gene034730:intron 20.0%
!! AATGTAACATGATTTATGTT+CGG + chr1.1:43878389-43878408 MS.gene034730:intron 20.0%
!! AATGTCTATAAATACTTGAA+TGG + chr1.1:43878823-43878842 MS.gene034730:intron 20.0%
!! ATAGGTATAAAAAGAGTAAA+AGG - chr1.1:43879496-43879515 None:intergenic 20.0%
!! ATGTCTATAAATACTTGAAT+GGG + chr1.1:43878824-43878843 MS.gene034730:intron 20.0%
!! CAAATACAAAACCTTAATAT+AGG - chr1.1:43879514-43879533 None:intergenic 20.0%
!! TCTAAATCTTTCAAATGTAA+TGG + chr1.1:43878934-43878953 MS.gene034730:intron 20.0%
!!! ATTTGTTGTAAATGAGTTTT+AGG + chr1.1:43878970-43878989 MS.gene034730:intron 20.0%
!!! CTCTTTTTATACCTATATTA+AGG + chr1.1:43879500-43879519 MS.gene034730:intron 20.0%
!!! TGAATTGATTTTTGTTAAGT+TGG + chr1.1:43878347-43878366 MS.gene034730:intron 20.0%
! AAATACTAGAACATGATCAA+AGG - chr1.1:43878635-43878654 None:intergenic 25.0%
! AACACAAATGAGAAGAAAAT+TGG + chr1.1:43879107-43879126 MS.gene034730:intron 25.0%
! AACTTTACTGTCAATCATAT+CGG + chr1.1:43879824-43879843 MS.gene034730:CDS 25.0%
! AATACTAGAACATGATCAAA+GGG - chr1.1:43878634-43878653 None:intergenic 25.0%
! AATTATGGTTAAGGATGTAA+AGG + chr1.1:43879054-43879073 MS.gene034730:intron 25.0%
! ATTATGGTTAAGGATGTAAA+GGG + chr1.1:43879055-43879074 MS.gene034730:intron 25.0%
! GTTGAACAATTGTTTGATAA+AGG + chr1.1:43878262-43878281 MS.gene034730:CDS 25.0%
! GTTTATCTTAAAGAACATGA+AGG + chr1.1:43878061-43878080 MS.gene034730:CDS 25.0%
! TGTAGAAGAAAATGTTTGAA+TGG - chr1.1:43878474-43878493 None:intergenic 25.0%
! TGTCTATAAATACTTGAATG+GGG + chr1.1:43878825-43878844 MS.gene034730:intron 25.0%
! TTGTTAAGAAGATTTACCAT+AGG - chr1.1:43878605-43878624 None:intergenic 25.0%
!! CCTTATATGGATCAATTTTA+CGG + chr1.1:43878722-43878741 MS.gene034730:CDS 25.0%
!! CTTATATGGATCAATTTTAC+GGG + chr1.1:43878723-43878742 MS.gene034730:CDS 25.0%
!!! CTTGTTATTCGATATAATTC+TGG + chr1.1:43878317-43878336 MS.gene034730:intron 25.0%
!!! TCATGTTCTTTAAGATAAAC+AGG - chr1.1:43878061-43878080 None:intergenic 25.0%
AAAGTTTCTGCTAATGGAAA+CGG + chr1.1:43879617-43879636 MS.gene034730:CDS 30.0%
AAATGATGATTGCAGTGATA+AGG - chr1.1:43878540-43878559 None:intergenic 30.0%
AACACAAAAGTTTCTGCTAA+TGG + chr1.1:43879611-43879630 MS.gene034730:CDS 30.0%
AGCAATTTGATCTATGTAGT+TGG - chr1.1:43878218-43878237 None:intergenic 30.0%
CCGTAAAATTGATCCATATA+AGG - chr1.1:43878725-43878744 None:intergenic 30.0%
CTAGTGAAAAAGGTTTCATT+TGG - chr1.1:43878189-43878208 None:intergenic 30.0%
CTGTGCAAAATATCCTTATA+TGG + chr1.1:43878709-43878728 MS.gene034730:CDS 30.0%
GATAGTTGTAAACAGATTTC+TGG - chr1.1:43878901-43878920 None:intergenic 30.0%
TAAACTGATAAAGCGTAACA+AGG + chr1.1:43879408-43879427 MS.gene034730:CDS 30.0%
TATATCGAATAACAAGTACC+TGG - chr1.1:43878313-43878332 None:intergenic 30.0%
TGGAACTTTAAATTCGTCAA+AGG + chr1.1:43879730-43879749 MS.gene034730:CDS 30.0%
! AGTTTTCAAACATTGTTGTG+AGG - chr1.1:43879454-43879473 None:intergenic 30.0%
! GTTTTCAAACATTGTTGTGA+GGG - chr1.1:43879453-43879472 None:intergenic 30.0%
! TGAAGTTTTTGCATGTATTC+AGG + chr1.1:43879181-43879200 MS.gene034730:intron 30.0%
!!! GATTTTTGTTAAGTTGGTTC+TGG + chr1.1:43878353-43878372 MS.gene034730:intron 30.0%
AAAACTGTCCAACAGAATTG+TGG - chr1.1:43878093-43878112 None:intergenic 35.0%
AACCTCAGATTGTAAGACTT+CGG - chr1.1:43879711-43879730 None:intergenic 35.0%
AAGAAAATGTTTGAATGGCC+AGG - chr1.1:43878469-43878488 None:intergenic 35.0%
AATTCGTCAAAGGAGACAAA+CGG + chr1.1:43879740-43879759 MS.gene034730:CDS 35.0%
ATAACAAGTACCTGGAAAGA+TGG - chr1.1:43878305-43878324 None:intergenic 35.0%
ATCTGCAGCAGATAAACAAA+TGG - chr1.1:43879222-43879241 None:intergenic 35.0%
TAAAGACAAACCGAGATTTG+AGG - chr1.1:43878767-43878786 None:intergenic 35.0%
TAAGAAGATTTACCATAGGC+TGG - chr1.1:43878601-43878620 None:intergenic 35.0%
TATGGATCTCAACCTGTTTA+TGG + chr1.1:43878148-43878167 MS.gene034730:CDS 35.0%
! ATAAACAGGTTGAGATCCAT+AGG - chr1.1:43878149-43878168 None:intergenic 35.0%
! GATAAGGTTGCTTGATGATT+CGG - chr1.1:43878524-43878543 None:intergenic 35.0%
! TATTTTGCACAGATCTAGCA+TGG - chr1.1:43878701-43878720 None:intergenic 35.0%
! TTGGAAAGCTCTAGTGAAAA+AGG - chr1.1:43878199-43878218 None:intergenic 35.0%
!! CACTTAATCGTTTTGAGCTA+GGG + chr1.1:43878570-43878589 MS.gene034730:CDS 35.0%
!! TTTATTCTGAAGCACAGCTT+TGG - chr1.1:43879392-43879411 None:intergenic 35.0%
AACCAATTCACCATCTTTCC+AGG + chr1.1:43878292-43878311 MS.gene034730:CDS 40.0%
AGCAATACCATGGAATCATC+AGG + chr1.1:43879350-43879369 MS.gene034730:CDS 40.0%
CATTTGAACTTTCCTATGCC+TGG + chr1.1:43878448-43878467 MS.gene034730:intron 40.0%
CCTAGCTCAAAACGATTAAG+TGG - chr1.1:43878572-43878591 None:intergenic 40.0%
CCTCGAACTAAGTTCTTACT+CGG - chr1.1:43878241-43878260 None:intergenic 40.0%
CTAATGGAAACGGTAAAAGC+GGG + chr1.1:43879627-43879646 MS.gene034730:CDS 40.0%
CTCAAAACGATTAAGTGGCT+CGG - chr1.1:43878567-43878586 None:intergenic 40.0%
CTTAGCATGACATCTGATGA+CGG + chr1.1:43879307-43879326 MS.gene034730:CDS 40.0%
GACTTATGGACCTCAAATCT+CGG + chr1.1:43878754-43878773 MS.gene034730:CDS 40.0%
GCTAATGGAAACGGTAAAAG+CGG + chr1.1:43879626-43879645 MS.gene034730:CDS 40.0%
GGAAATGTCCACAATTCTGT+TGG + chr1.1:43878082-43878101 MS.gene034730:CDS 40.0%
GTATCGTCATGCCAACAAAA+TGG + chr1.1:43879891-43879910 MS.gene034730:CDS 40.0%
GTGAATGCTAAGCAATACCA+TGG + chr1.1:43879340-43879359 MS.gene034730:CDS 40.0%
GTGACTAGCATGTATTCACA+GGG + chr1.1:43879791-43879810 MS.gene034730:CDS 40.0%
TACCTGGAAAGATGGTGAAT+TGG - chr1.1:43878297-43878316 None:intergenic 40.0%
TCATCAGATGTCATGCTAAG+TGG - chr1.1:43879307-43879326 None:intergenic 40.0%
TGCTTAGCATTCACGTATGT+TGG - chr1.1:43879334-43879353 None:intergenic 40.0%
TTCCGAAGTCTTACAATCTG+AGG + chr1.1:43879706-43879725 MS.gene034730:CDS 40.0%
! ATCTCGGTTTGTCTTTAGCT+CGG + chr1.1:43878770-43878789 MS.gene034730:intron 40.0%
! GAAGTCTTACAATCTGAGGT+TGG + chr1.1:43879710-43879729 MS.gene034730:CDS 40.0%
!! CCACTTAATCGTTTTGAGCT+AGG + chr1.1:43878569-43878588 MS.gene034730:CDS 40.0%
AAAAGCGGGAGTGAAGAGAA+CGG + chr1.1:43879641-43879660 MS.gene034730:CDS 45.0%
ACTAGCATGTATTCACAGGG+AGG + chr1.1:43879794-43879813 MS.gene034730:CDS 45.0%
AGTGAAGAGAACGGAAACAC+TGG + chr1.1:43879650-43879669 MS.gene034730:CDS 45.0%
ATGTTTGAATGGCCAGGCAT+AGG - chr1.1:43878463-43878482 None:intergenic 45.0%
CAAGACTCTCCTCCATAAAC+AGG - chr1.1:43878163-43878182 None:intergenic 45.0%
CCGAGTAAGAACTTAGTTCG+AGG + chr1.1:43878238-43878257 MS.gene034730:CDS 45.0%
GACATGATCGATACTGGACA+CGG + chr1.1:43879869-43879888 MS.gene034730:CDS 45.0%
GGATCTACTGTCCACTCTTT+GGG + chr1.1:43879845-43879864 MS.gene034730:CDS 45.0%
GGATCTCAACCTGTTTATGG+AGG + chr1.1:43878151-43878170 MS.gene034730:CDS 45.0%
GGTGACTAGCATGTATTCAC+AGG + chr1.1:43879790-43879809 MS.gene034730:CDS 45.0%
GTTTATGGAGGAGAGTCTTG+TGG + chr1.1:43878163-43878182 MS.gene034730:CDS 45.0%
TGACGCGATTCGTGCATATA+TGG - chr1.1:43879545-43879564 None:intergenic 45.0%
TGCACAGATCTAGCATGGAA+AGG - chr1.1:43878696-43878715 None:intergenic 45.0%
TTGGGAGACATGATCGATAC+TGG + chr1.1:43879863-43879882 MS.gene034730:CDS 45.0%
! ACAAAATGGTTTGCAGCAGC+TGG + chr1.1:43879905-43879924 MS.gene034730:CDS 45.0%
! GCTGCTGCAAACCATTTTGT+TGG - chr1.1:43879905-43879924 None:intergenic 45.0%
!! AAGTTGGTTCTGGCTAAACG+TGG + chr1.1:43878363-43878382 MS.gene034730:intron 45.0%
!! TATCTATATTTAATAAATTA+GGG + chr1.1:43879268-43879287 MS.gene034730:intron 5.0%
ATGCGTAGACCAAGAGGATG+CGG + chr1.1:43879575-43879594 MS.gene034730:CDS 50.0%
CATCTGTGACTTCAGCACCA+TGG + chr1.1:43878113-43878132 MS.gene034730:CDS 50.0%
CATGCAATGCGTAGACCAAG+AGG + chr1.1:43879569-43879588 MS.gene034730:CDS 50.0%
CCATAGGCATTACTCCACCA+TGG - chr1.1:43878133-43878152 None:intergenic 50.0%
CGATCATGTCTCCCAAAGAG+TGG - chr1.1:43879859-43879878 None:intergenic 50.0%
CGGATCTACTGTCCACTCTT+TGG + chr1.1:43879844-43879863 MS.gene034730:CDS 50.0%
GAAGAGAACGGAAACACTGG+TGG + chr1.1:43879653-43879672 MS.gene034730:CDS 50.0%
GCTAGGGTTTAACCAGCCTA+TGG + chr1.1:43878586-43878605 MS.gene034730:CDS 50.0%
TACGGGCTCTTCTCGACTTA+TGG + chr1.1:43878740-43878759 MS.gene034730:CDS 50.0%
TCGTCAAAGGAGACAAACGG+AGG + chr1.1:43879743-43879762 MS.gene034730:CDS 50.0%
! CCATGGTGGAGTAATGCCTA+TGG + chr1.1:43878130-43878149 MS.gene034730:CDS 50.0%
! TTCGGAACTCTGAGAACCAC+TGG - chr1.1:43879693-43879712 None:intergenic 50.0%
AAACGACCACCGCATCCTCT+TGG - chr1.1:43879587-43879606 None:intergenic 55.0%
AACCACTGGACTGCAGCTGT+AGG - chr1.1:43879679-43879698 None:intergenic 55.0%
ACCATGGAATCATCAGGCGC+AGG + chr1.1:43879356-43879375 MS.gene034730:CDS 55.0%
ACCTCTGACCCCGAAACGTT+TGG - chr1.1:43879773-43879792 None:intergenic 55.0%
CGGAGGCAGTCCAAACGTTT+CGG + chr1.1:43879760-43879779 MS.gene034730:CDS 55.0%
CTGTGACTTCAGCACCATGG+TGG + chr1.1:43878116-43878135 MS.gene034730:CDS 55.0%
GAGGCAGTCCAAACGTTTCG+GGG + chr1.1:43879762-43879781 MS.gene034730:CDS 55.0%
GGAGGCAGTCCAAACGTTTC+GGG + chr1.1:43879761-43879780 MS.gene034730:CDS 55.0%
TCCAAACGTTTCGGGGTCAG+AGG + chr1.1:43879769-43879788 MS.gene034730:CDS 55.0%
CGTAGACCAAGAGGATGCGG+TGG + chr1.1:43879578-43879597 MS.gene034730:CDS 60.0%
GCCTGCGCCTGATGATTCCA+TGG - chr1.1:43879360-43879379 None:intergenic 60.0%
AGCAGCTGGCAGACAGCTGC+TGG + chr1.1:43879919-43879938 MS.gene034730:CDS 65.0%
GGCCTACAGCTGCAGTCCAG+TGG + chr1.1:43879674-43879693 MS.gene034730:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 43878046 43879949 43878046 ID=MS.gene034730
chr1.1 mRNA 43878046 43879949 43878046 ID=MS.gene034730.t1;Parent=MS.gene034730
chr1.1 exon 43878046 43878313 43878046 ID=MS.gene034730.t1.exon1;Parent=MS.gene034730.t1
chr1.1 CDS 43878046 43878313 43878046 ID=cds.MS.gene034730.t1;Parent=MS.gene034730.t1
chr1.1 exon 43878495 43878607 43878495 ID=MS.gene034730.t1.exon2;Parent=MS.gene034730.t1
chr1.1 CDS 43878495 43878607 43878495 ID=cds.MS.gene034730.t1;Parent=MS.gene034730.t1
chr1.1 exon 43878707 43878775 43878707 ID=MS.gene034730.t1.exon3;Parent=MS.gene034730.t1
chr1.1 CDS 43878707 43878775 43878707 ID=cds.MS.gene034730.t1;Parent=MS.gene034730.t1
chr1.1 exon 43879289 43879429 43879289 ID=MS.gene034730.t1.exon4;Parent=MS.gene034730.t1
chr1.1 CDS 43879289 43879429 43879289 ID=cds.MS.gene034730.t1;Parent=MS.gene034730.t1
chr1.1 exon 43879542 43879949 43879542 ID=MS.gene034730.t1.exon5;Parent=MS.gene034730.t1
chr1.1 CDS 43879542 43879949 43879542 ID=cds.MS.gene034730.t1;Parent=MS.gene034730.t1
Gene Sequence

>MS.gene034730

ATGGCTATGCAACCTGTTTATCTTAAAGAACATGAAGGAAATGTCCACAATTCTGTTGGACAGTTTTCATCTGTGACTTCAGCACCATGGTGGAGTAATGCCTATGGATCTCAACCTGTTTATGGAGGAGAGTCTTGTGGCCAAATGAAACCTTTTTCACTAGAGCTTTCCAACTACATAGATCAAATTGCTCCGAGTAAGAACTTAGTTCGAGGAGTTGAACAATTGTTTGATAAAGGACATACAAACCAATTCACCATCTTTCCAGGTACTTGTTATTCGATATAATTCTGGTTTTGAATGAATTGATTTTTGTTAAGTTGGTTCTGGCTAAACGTGGTTAAATGTAACATGATTTATGTTCGGATACGTTTATGTAAAAGTGAGTTGAACATAAATTGTCATTTGAACTTTCCTATGCCTGGCCATTCAAACATTTTCTTCTACAGATGATTGTAAGATGTCAGTTGATACACCGAATCATCAAGCAACCTTATCACTGCAATCATCATTTGCTGCCGAGCCACTTAATCGTTTTGAGCTAGGGTTTAACCAGCCTATGGTAAATCTTCTTAACAAAACAATCCCTTTGATCATGTTCTAGTATTTTACTTTTGATGTACATAAATTCATTATGTTTTTATTATCCTTTCCATGCTAGATCTGTGCAAAATATCCTTATATGGATCAATTTTACGGGCTCTTCTCGACTTATGGACCTCAAATCTCGGTTTGTCTTTAGCTCGGCTATTTTATTAATCTTTGTATATATCATGCAATGTCTATAAATACTTGAATGGGGATTTTTTTTTTTTTTTATTTGTGTACAGTGTATATGCTTACATGACAAAGCCAGAAATCTGTTTACAACTATCTTGTTAGTATTCTTCTAAATCTTTCAAATGTAATGGAGTTGATTATGAAATTTGTTGTAAATGAGTTTTAGGCTTTATGAATGAATTGTAAGACAAGCAATGAAATAAAAAAAAAAGTAAAAAAAAGTAAAGAAATTATGGTTAAGGATGTAAAGGGTAACAATATTAAGTTAGTATTATGATTTAAACACAAATGAGAAGAAAATTGGAGTGCATTGAACTTATAGCCTTAAAATTGAATTATATGATGCAATCTGTGTTGAAGTTTTTGCATGTATTCAGGTTCTGCTTTTAGTTACCATTTGTTTATCTGCTGCAGATATTTCATCAATTATTATTCATTTATGTATCTATATTTAATAAATTAGGGACGTGTTATGCTTCCACTTAGCATGACATCTGATGACGGACCAACATACGTGAATGCTAAGCAATACCATGGAATCATCAGGCGCAGGCATTCTCGTGCCAAAGCTGTGCTTCAGAATAAACTGATAAAGCGTAACAAGGTATGAAATATGAGTATTTTCCCTCACAACAATGTTTGAAAACTTGTGAAATAGTATATTTTTCCTTTTACTCTTTTTATACCTATATTAAGGTTTTGTATTTGTCTTGTAGCCATATATGCACGAATCGCGTCATCTACATGCAATGCGTAGACCAAGAGGATGCGGTGGTCGTTTCTTGAACACAAAAGTTTCTGCTAATGGAAACGGTAAAAGCGGGAGTGAAGAGAACGGAAACACTGGTGGCCTACAGCTGCAGTCCAGTGGTTCTCAGAGTTCCGAAGTCTTACAATCTGAGGTTGGAACTTTAAATTCGTCAAAGGAGACAAACGGAGGCAGTCCAAACGTTTCGGGGTCAGAGGTGACTAGCATGTATTCACAGGGAGGTCTTGATAACTTTACTGTCAATCATATCGGATCTACTGTCCACTCTTTGGGAGACATGATCGATACTGGACACGGTATCGTCATGCCAACAAAATGGTTTGCAGCAGCTGGCAGACAGCTGCTGGAACCATAA
Protein sequence

>MS.gene034730.t1

MAMQPVYLKEHEGNVHNSVGQFSSVTSAPWWSNAYGSQPVYGGESCGQMKPFSLELSNYIDQIAPSKNLVRGVEQLFDKGHTNQFTIFPDDCKMSVDTPNHQATLSLQSSFAAEPLNRFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRVMLPLSMTSDDGPTYVNAKQYHGIIRRRHSRAKAVLQNKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKVSANGNGKSGSEENGNTGGLQLQSSGSQSSEVLQSEVGTLNSSKETNGGSPNVSGSEVTSMYSQGGLDNFTVNHIGSTVHSLGDMIDTGHGIVMPTKWFAAAGRQLLEP