Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26493.t1 | XP_013450229.1 | 96.7 | 334 | 10 | 1 | 1 | 334 | 1 | 333 | 5.20E-183 | 650.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26493.t1 | Q8LFU0 | 45.7 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 2.0e-50 | 201.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26493.t1 | I3TAV2 | 96.7 | 334 | 10 | 1 | 1 | 334 | 1 | 333 | 3.7e-183 | 650.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26493.t1 | TF | NF-YA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034730 | MS.gene26493 | PPI |
| MS.gene46438 | MS.gene26493 | PPI |
| MS.gene41018 | MS.gene26493 | PPI |
| MS.gene23087 | MS.gene26493 | PPI |
| MS.gene007115 | MS.gene26493 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26493.t1 | MTR_7g106450 | 96.707 | 334 | 10 | 1 | 1 | 334 | 1 | 333 | 0.0 | 672 |
| MS.gene26493.t1 | MTR_1g056530 | 70.393 | 331 | 89 | 6 | 1 | 327 | 1 | 326 | 5.17e-156 | 440 |
| MS.gene26493.t1 | MTR_8g037270 | 47.682 | 151 | 58 | 7 | 99 | 231 | 72 | 219 | 1.14e-30 | 118 |
| MS.gene26493.t1 | MTR_2g041090 | 49.296 | 142 | 51 | 7 | 115 | 236 | 10 | 150 | 4.86e-29 | 112 |
| MS.gene26493.t1 | MTR_2g030170 | 51.923 | 104 | 48 | 1 | 135 | 236 | 80 | 183 | 4.23e-28 | 108 |
| MS.gene26493.t1 | MTR_3g061510 | 48.031 | 127 | 51 | 5 | 106 | 221 | 104 | 226 | 4.47e-28 | 111 |
| MS.gene26493.t1 | MTR_3g061510 | 48.031 | 127 | 51 | 5 | 106 | 221 | 124 | 246 | 7.02e-28 | 111 |
| MS.gene26493.t1 | MTR_2g030170 | 58.750 | 80 | 33 | 0 | 157 | 236 | 137 | 216 | 5.72e-27 | 106 |
| MS.gene26493.t1 | MTR_2g099490 | 55.556 | 99 | 36 | 3 | 136 | 226 | 134 | 232 | 8.92e-26 | 105 |
| MS.gene26493.t1 | MTR_8g019540 | 47.458 | 118 | 47 | 4 | 122 | 226 | 110 | 225 | 2.24e-25 | 104 |
| MS.gene26493.t1 | MTR_2g099490 | 52.041 | 98 | 40 | 2 | 136 | 226 | 151 | 248 | 2.98e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26493.t1 | AT5G06510 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 1.09e-67 | 213 |
| MS.gene26493.t1 | AT5G06510 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 1.09e-67 | 213 |
| MS.gene26493.t1 | AT5G06510 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 1.09e-67 | 213 |
| MS.gene26493.t1 | AT5G06510 | 45.724 | 304 | 112 | 12 | 33 | 332 | 13 | 267 | 1.09e-67 | 213 |
| MS.gene26493.t1 | AT3G05690 | 44.410 | 322 | 112 | 18 | 34 | 333 | 18 | 294 | 8.47e-61 | 196 |
| MS.gene26493.t1 | AT5G06510 | 48.963 | 241 | 78 | 10 | 96 | 332 | 19 | 218 | 1.68e-60 | 193 |
| MS.gene26493.t1 | AT3G05690 | 44.340 | 318 | 118 | 18 | 34 | 333 | 55 | 331 | 4.94e-60 | 196 |
| MS.gene26493.t1 | AT5G06510 | 49.268 | 205 | 65 | 9 | 132 | 332 | 3 | 172 | 1.01e-49 | 164 |
| MS.gene26493.t1 | AT5G06510 | 49.268 | 205 | 65 | 9 | 132 | 332 | 3 | 172 | 1.01e-49 | 164 |
| MS.gene26493.t1 | AT2G34720 | 50.820 | 122 | 46 | 4 | 125 | 233 | 44 | 164 | 1.36e-32 | 120 |
| MS.gene26493.t1 | AT1G30500 | 53.846 | 104 | 42 | 1 | 129 | 226 | 53 | 156 | 4.94e-31 | 115 |
| MS.gene26493.t1 | AT2G34720 | 53.097 | 113 | 39 | 4 | 134 | 233 | 18 | 129 | 7.93e-31 | 114 |
| MS.gene26493.t1 | AT2G34720 | 53.097 | 113 | 39 | 4 | 134 | 233 | 18 | 129 | 7.93e-31 | 114 |
| MS.gene26493.t1 | AT1G30500 | 51.852 | 108 | 42 | 2 | 129 | 226 | 53 | 160 | 2.49e-30 | 114 |
| MS.gene26493.t1 | AT1G72830 | 54.717 | 106 | 34 | 3 | 134 | 226 | 135 | 239 | 4.24e-29 | 114 |
| MS.gene26493.t1 | AT5G12840 | 44.516 | 155 | 67 | 6 | 125 | 267 | 122 | 269 | 5.15e-29 | 113 |
| MS.gene26493.t1 | AT5G12840 | 44.516 | 155 | 67 | 6 | 125 | 267 | 122 | 269 | 5.15e-29 | 113 |
| MS.gene26493.t1 | AT5G12840 | 44.516 | 155 | 67 | 6 | 125 | 267 | 122 | 269 | 5.15e-29 | 113 |
| MS.gene26493.t1 | AT5G12840 | 44.516 | 155 | 67 | 6 | 125 | 267 | 121 | 268 | 5.20e-29 | 113 |
| MS.gene26493.t1 | AT5G12840 | 44.516 | 155 | 67 | 6 | 125 | 267 | 121 | 268 | 5.20e-29 | 113 |
| MS.gene26493.t1 | AT1G72830 | 54.206 | 107 | 34 | 4 | 134 | 226 | 135 | 240 | 1.53e-27 | 110 |
| MS.gene26493.t1 | AT3G20910 | 43.571 | 140 | 66 | 3 | 135 | 263 | 126 | 263 | 9.33e-26 | 105 |
| MS.gene26493.t1 | AT1G17590 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.03e-25 | 105 |
| MS.gene26493.t1 | AT1G17590 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.03e-25 | 105 |
| MS.gene26493.t1 | AT1G17590 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.03e-25 | 105 |
| MS.gene26493.t1 | AT1G17590 | 50.495 | 101 | 41 | 3 | 134 | 226 | 133 | 232 | 1.03e-25 | 105 |
| MS.gene26493.t1 | AT3G14020 | 55.670 | 97 | 34 | 3 | 134 | 226 | 140 | 231 | 1.17e-25 | 104 |
| MS.gene26493.t1 | AT3G14020 | 55.670 | 97 | 34 | 3 | 134 | 226 | 140 | 231 | 1.17e-25 | 104 |
| MS.gene26493.t1 | AT1G54160 | 59.211 | 76 | 30 | 1 | 151 | 226 | 164 | 238 | 1.63e-23 | 99.0 |
| MS.gene26493.t1 | AT1G72830 | 49.474 | 95 | 31 | 2 | 134 | 226 | 135 | 214 | 8.57e-20 | 88.6 |
Find 91 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTACAGAATCAAGCTTTA+AGG | 0.131683 | 7.3:-7760349 | None:intergenic |
| TTTGGATCTCAATCCCTTTA+TGG | 0.173015 | 7.3:+7757610 | MS.gene26493:CDS |
| ACCTCTGATCCAGAAATATT+TGG | 0.179271 | 7.3:-7760179 | None:intergenic |
| GGAAGCAGCCCAAATATTTC+TGG | 0.235006 | 7.3:+7760170 | MS.gene26493:CDS |
| TCAAAGCGATTTGGGGTATC+AGG | 0.271732 | 7.3:-7758855 | None:intergenic |
| GAACTCCTTGAATCTGATAT+TGG | 0.275281 | 7.3:+7760119 | MS.gene26493:CDS |
| ATCCCAGCTCAAAGCGATTT+GGG | 0.305403 | 7.3:-7758863 | None:intergenic |
| AATCACTTTACCATCTTTCC+AGG | 0.307723 | 7.3:+7757754 | MS.gene26493:CDS |
| AATCCCAGCTCAAAGCGATT+TGG | 0.319442 | 7.3:-7758864 | None:intergenic |
| GCACCATGGTGGAGTAGTTT+TGG | 0.325147 | 7.3:+7757592 | MS.gene26493:CDS |
| AATCGCTTTGAGCTGGGATT+TGG | 0.341249 | 7.3:+7758867 | MS.gene26493:CDS |
| CCAATGAAAAGGATTTGATT+TGG | 0.354007 | 7.3:-7757645 | None:intergenic |
| GCCAATGGAGATGGTAAAAC+TGG | 0.357725 | 7.3:+7760038 | MS.gene26493:CDS |
| GCCAGCTGCTGTTACCCATT+TGG | 0.363280 | 7.3:-7760315 | None:intergenic |
| AACTCTTCAAAGGAAACTAA+TGG | 0.364196 | 7.3:+7760149 | MS.gene26493:CDS |
| GGCCACCAGACTCTCCATAA+AGG | 0.392293 | 7.3:-7757624 | None:intergenic |
| TGGATCTTCTGTCCACTCTA+TGG | 0.396364 | 7.3:+7760253 | MS.gene26493:CDS |
| GCCACCAGACTCTCCATAAA+GGG | 0.396734 | 7.3:-7757623 | None:intergenic |
| GACTGCTGACTGCAATGATA+TGG | 0.404925 | 7.3:-7758832 | None:intergenic |
| CATCATCAGATGTCATGTTA+AGG | 0.417508 | 7.3:-7759260 | None:intergenic |
| CCTCTGATCCAGAAATATTT+GGG | 0.418372 | 7.3:-7760178 | None:intergenic |
| AGAGGAACTGAACATGTGTT+TGG | 0.420524 | 7.3:+7757718 | MS.gene26493:CDS |
| CAATCCCTTTATGGAGAGTC+TGG | 0.421990 | 7.3:+7757619 | MS.gene26493:CDS |
| GTGTTATCATGCCGACCAAA+TGG | 0.422418 | 7.3:+7760300 | MS.gene26493:CDS |
| AAAAGACACACTTGAATTTG+AGG | 0.424726 | 7.3:-7759096 | None:intergenic |
| AAGTTCCAATATCAGATTCA+AGG | 0.429838 | 7.3:-7760124 | None:intergenic |
| TATGGACTCATCTCAACCTA+TGG | 0.435805 | 7.3:+7759072 | MS.gene26493:CDS |
| GGAAGTAAAGTGCATAAATT+CGG | 0.437987 | 7.3:+7760059 | MS.gene26493:CDS |
| TTTGTGACCAAGTACAGCTT+TGG | 0.439346 | 7.3:-7759343 | None:intergenic |
| CTCTCGGTCGCCGCATTGCA+TGG | 0.444185 | 7.3:-7759980 | None:intergenic |
| TTTGTGGGGCAATTATCATC+TGG | 0.452637 | 7.3:+7757550 | MS.gene26493:CDS |
| ATCATCAGATGTCATGTTAA+GGG | 0.456801 | 7.3:-7759259 | None:intergenic |
| TACCCCAAATCGCTTTGAGC+TGG | 0.460604 | 7.3:+7758860 | MS.gene26493:CDS |
| TGGAAAGATGGTAAAGTGAT+TGG | 0.466352 | 7.3:-7757752 | None:intergenic |
| TGCTTAGCATTCACATAAAT+AGG | 0.466962 | 7.3:-7759285 | None:intergenic |
| GAGGAACTGAACATGTGTTT+GGG | 0.473124 | 7.3:+7757719 | MS.gene26493:CDS |
| CTGAACATGTGTTTGGGAAA+GGG | 0.489888 | 7.3:+7757725 | MS.gene26493:CDS |
| TCCCGCGCCAAAGCTGTACT+TGG | 0.491975 | 7.3:+7759336 | MS.gene26493:CDS |
| ACCCCAAATCGCTTTGAGCT+GGG | 0.495542 | 7.3:+7758861 | MS.gene26493:CDS |
| CCATAAAATTGATCTGCATA+AGG | 0.496364 | 7.3:-7759054 | None:intergenic |
| AAATTACAAACCTGGAAAGA+TGG | 0.499330 | 7.3:-7757764 | None:intergenic |
| ACCAAATGGGTAACAGCAGC+TGG | 0.501310 | 7.3:+7760314 | MS.gene26493:CDS |
| CATAGGTGGCTCCAATGAAA+AGG | 0.504139 | 7.3:-7757656 | None:intergenic |
| CACTTGAATTTGAGGTCCAT+AGG | 0.510920 | 7.3:-7759088 | None:intergenic |
| TGGAACTTTAAACTCTTCAA+AGG | 0.511753 | 7.3:+7760139 | MS.gene26493:CDS |
| AGGTGACTAGTTTGTATTCG+AGG | 0.519014 | 7.3:+7760198 | MS.gene26493:CDS |
| TGGCGTGACTCGTGCATGTA+GGG | 0.520062 | 7.3:-7759954 | None:intergenic |
| GCTGGGATTTGGTCAACCTA+TGG | 0.529602 | 7.3:+7758878 | MS.gene26493:CDS |
| ATGGCGTGACTCGTGCATGT+AGG | 0.531463 | 7.3:-7759955 | None:intergenic |
| TGTTATCATGCCGACCAAAT+GGG | 0.536297 | 7.3:+7760301 | MS.gene26493:CDS |
| TGCAATGATATGGCTGTATG+AGG | 0.536424 | 7.3:-7758822 | None:intergenic |
| AGCTTTACCGTCAATCACCT+TGG | 0.539572 | 7.3:+7760233 | MS.gene26493:CDS |
| CTTAACATGACATCTGATGA+TGG | 0.543590 | 7.3:+7759261 | MS.gene26493:CDS |
| GGTGACTAGTTTGTATTCGA+GGG | 0.543743 | 7.3:+7760199 | MS.gene26493:CDS |
| ACTGAACATGTGTTTGGGAA+AGG | 0.545969 | 7.3:+7757724 | MS.gene26493:CDS |
| AAGAAATCTGCCAATGGAGA+TGG | 0.548636 | 7.3:+7760029 | MS.gene26493:CDS |
| ATGCGGCGACCGAGAGGATG+TGG | 0.549647 | 7.3:+7759987 | MS.gene26493:CDS |
| CCCAAATATTTCTGGATCAG+AGG | 0.555972 | 7.3:+7760178 | MS.gene26493:CDS |
| ATTGCTTAGTTGCAGCAAGT+TGG | 0.559108 | 7.3:-7757690 | None:intergenic |
| GACATGATCGATGGTGGGCG+TGG | 0.559837 | 7.3:+7760278 | MS.gene26493:CDS |
| ACCAAGTACAGCTTTGGCGC+GGG | 0.561918 | 7.3:-7759337 | None:intergenic |
| AGAAGATCCAAGGTGATTGA+CGG | 0.562013 | 7.3:-7760240 | None:intergenic |
| GCTGCTGTTACCCATTTGGT+CGG | 0.574530 | 7.3:-7760311 | None:intergenic |
| ATGGCAGACATGATCGATGG+TGG | 0.576851 | 7.3:+7760272 | MS.gene26493:CDS |
| GTCGCCGCATTGCATGGAGA+TGG | 0.577807 | 7.3:-7759974 | None:intergenic |
| GTTTATCTGAAAGAACATGA+TGG | 0.580817 | 7.3:+7757514 | MS.gene26493:CDS |
| CAAATTGATTAAACGTAACA+AGG | 0.583050 | 7.3:+7759362 | MS.gene26493:CDS |
| CAAAGCGATTTGGGGTATCA+GGG | 0.586352 | 7.3:-7758854 | None:intergenic |
| CGATCATGTCTGCCATAGAG+TGG | 0.586528 | 7.3:-7760265 | None:intergenic |
| TCATCAGATGTCATGTTAAG+GGG | 0.601001 | 7.3:-7759258 | None:intergenic |
| AGTTGGTCAACAGCAGACAT+AGG | 0.601111 | 7.3:-7757673 | None:intergenic |
| GACCAAGTACAGCTTTGGCG+CGG | 0.601436 | 7.3:-7759338 | None:intergenic |
| GTGAATGCTAAGCAGTACAA+TGG | 0.608645 | 7.3:+7759294 | MS.gene26493:CDS |
| AGTCAACAATTGCAGTTCAG+TGG | 0.610037 | 7.3:+7760083 | MS.gene26493:CDS |
| GCAACTAAGCAATCTGCTAG+AGG | 0.619360 | 7.3:+7757700 | MS.gene26493:CDS |
| TGGCAGACATGATCGATGGT+GGG | 0.625708 | 7.3:+7760273 | MS.gene26493:CDS |
| TAGAGTGGACAGAAGATCCA+AGG | 0.626448 | 7.3:-7760250 | None:intergenic |
| CATGCAATGCGGCGACCGAG+AGG | 0.626832 | 7.3:+7759981 | MS.gene26493:CDS |
| TCCCAGCTCAAAGCGATTTG+GGG | 0.628059 | 7.3:-7758862 | None:intergenic |
| AACACAAAGAAATCTGCCAA+TGG | 0.628709 | 7.3:+7760023 | MS.gene26493:CDS |
| AAACGACCACCACATCCTCT+CGG | 0.633569 | 7.3:-7759996 | None:intergenic |
| GTGACTAGTTTGTATTCGAG+GGG | 0.634644 | 7.3:+7760200 | MS.gene26493:CDS |
| TCCCTTTATGGAGAGTCTGG+TGG | 0.654622 | 7.3:+7757622 | MS.gene26493:CDS |
| TCTATGGCAGACATGATCGA+TGG | 0.660420 | 7.3:+7760269 | MS.gene26493:CDS |
| CGGCGACCGAGAGGATGTGG+TGG | 0.666958 | 7.3:+7759990 | MS.gene26493:CDS |
| ATTCAGCTGCTGCACCATGG+TGG | 0.677437 | 7.3:+7757581 | MS.gene26493:CDS |
| TGGTCAACAGCAGACATAGG+TGG | 0.678879 | 7.3:-7757670 | None:intergenic |
| CACGCCATCTCCATGCAATG+CGG | 0.685964 | 7.3:+7759970 | MS.gene26493:CDS |
| ATAATTCAGCTGCTGCACCA+TGG | 0.686059 | 7.3:+7757578 | MS.gene26493:CDS |
| ACAATGGAATCATTAGACGT+CGG | 0.715449 | 7.3:+7759310 | MS.gene26493:CDS |
| GATCCAAAACTACTCCACCA+TGG | 0.743317 | 7.3:-7757595 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTGTTATTAACATTCT+TGG | - | chr7.3:7759809-7759828 | None:intergenic | 15.0% |
| !!! | AATATTTGAGTTGTTTTATT+TGG | + | chr7.3:7757882-7757901 | MS.gene26493:intron | 15.0% |
| !!! | ATTAAACATTTTTATCTAGT+TGG | - | chr7.3:7758370-7758389 | None:intergenic | 15.0% |
| !! | AAGTTATCATCTATAACTTA+TGG | - | chr7.3:7758043-7758062 | None:intergenic | 20.0% |
| !! | AATAAAAAATCTTTGCATTC+TGG | + | chr7.3:7758253-7758272 | MS.gene26493:intron | 20.0% |
| !! | AGTTTCCAAACAATAAAAAA+TGG | - | chr7.3:7758607-7758626 | None:intergenic | 20.0% |
| !! | TATATGTGTGTTATAGATTT+AGG | - | chr7.3:7758168-7758187 | None:intergenic | 20.0% |
| !! | TCTGCTTGAAAAAAAATAAA+AGG | - | chr7.3:7759649-7759668 | None:intergenic | 20.0% |
| !! | TGAAATTATAGGAATCTAAT+AGG | - | chr7.3:7758504-7758523 | None:intergenic | 20.0% |
| !!! | ATTTTCTAACAATGCAAAAA+TGG | + | chr7.3:7758477-7758496 | MS.gene26493:intron | 20.0% |
| !!! | GTTTGACTTAATTTTATCTT+TGG | + | chr7.3:7758072-7758091 | MS.gene26493:intron | 20.0% |
| !!! | TCAAATGGTTTTAAACTATA+GGG | + | chr7.3:7758639-7758658 | MS.gene26493:intron | 20.0% |
| !!! | TTCAAATGGTTTTAAACTAT+AGG | + | chr7.3:7758638-7758657 | MS.gene26493:intron | 20.0% |
| !!! | TTTTATTGTTTGGAAACTAT+AGG | + | chr7.3:7758609-7758628 | MS.gene26493:intron | 20.0% |
| !!! | TTTTCTTTTTGTCTTTTTTC+TGG | + | chr7.3:7759430-7759449 | MS.gene26493:intron | 20.0% |
| ! | AAAAAATGGTCCCTATAAAT+TGG | - | chr7.3:7758593-7758612 | None:intergenic | 25.0% |
| ! | AAGAATAAACATCTGAAAGT+TGG | - | chr7.3:7758767-7758786 | None:intergenic | 25.0% |
| ! | ACAAAACAAGTCCAATTTAT+AGG | + | chr7.3:7758579-7758598 | MS.gene26493:intron | 25.0% |
| ! | ATATGAGGAATCATGAAATA+AGG | + | chr7.3:7759673-7759692 | MS.gene26493:intron | 25.0% |
| ! | ATGTTTGTATGTAACAATGT+AGG | + | chr7.3:7759221-7759240 | MS.gene26493:intron | 25.0% |
| ! | CAAAACAAGTCCAATTTATA+GGG | + | chr7.3:7758580-7758599 | MS.gene26493:intron | 25.0% |
| ! | CAAATTGATTAAACGTAACA+AGG | + | chr7.3:7759362-7759381 | MS.gene26493:CDS | 25.0% |
| ! | CATTATTGGAGTGAAATTAT+AGG | - | chr7.3:7758515-7758534 | None:intergenic | 25.0% |
| ! | GGCAATAATTTGAAAAGAAA+TGG | + | chr7.3:7757850-7757869 | MS.gene26493:intron | 25.0% |
| ! | TCAAAAAATGTATGGCAAAA+AGG | - | chr7.3:7758212-7758231 | None:intergenic | 25.0% |
| ! | TCAAAATATCTTCAGAAGTA+AGG | - | chr7.3:7759564-7759583 | None:intergenic | 25.0% |
| ! | TCTCTACAAAATAACTTCTA+CGG | + | chr7.3:7758908-7758927 | MS.gene26493:intron | 25.0% |
| ! | TGTTTGTATGTAACAATGTA+GGG | + | chr7.3:7759222-7759241 | MS.gene26493:intron | 25.0% |
| ! | TTCCTGAAATTACTCTAATA+AGG | + | chr7.3:7758554-7758573 | MS.gene26493:intron | 25.0% |
| ! | TTCCTTATTAGAGTAATTTC+AGG | - | chr7.3:7758559-7758578 | None:intergenic | 25.0% |
| ! | TTGAAAAGAAATGGAAGTAA+TGG | + | chr7.3:7757859-7757878 | MS.gene26493:intron | 25.0% |
| ! | TTGATTAATCTTAGTCCAAT+AGG | + | chr7.3:7759467-7759486 | MS.gene26493:intron | 25.0% |
| ! | TTTCAAGCAGAAATAATATG+AGG | + | chr7.3:7759658-7759677 | MS.gene26493:intron | 25.0% |
| !! | ACATTTTTATCTAGTTGGAT+AGG | - | chr7.3:7758365-7758384 | None:intergenic | 25.0% |
| !! | CATTTTTATCTAGTTGGATA+GGG | - | chr7.3:7758364-7758383 | None:intergenic | 25.0% |
| !! | TAGTAATTGATATCGACTAT+TGG | + | chr7.3:7757926-7757945 | MS.gene26493:intron | 25.0% |
| !! | TAGTTTTTATAAGAAGCTAG+CGG | - | chr7.3:7759125-7759144 | None:intergenic | 25.0% |
| !!! | ACTTCTGAAGATATTTTGAA+AGG | + | chr7.3:7759565-7759584 | MS.gene26493:intron | 25.0% |
| !!! | TCAGATGATTTTAAAATGTC+AGG | + | chr7.3:7758786-7758805 | MS.gene26493:intron | 25.0% |
| !!! | TTTTTGCCATACATTTTTTG+AGG | + | chr7.3:7758211-7758230 | MS.gene26493:intron | 25.0% |
| AAAAGACACACTTGAATTTG+AGG | - | chr7.3:7759099-7759118 | None:intergenic | 30.0% | |
| AAATTACAAACCTGGAAAGA+TGG | - | chr7.3:7757767-7757786 | None:intergenic | 30.0% | |
| AACACACATATATCACAAGT+TGG | + | chr7.3:7758176-7758195 | MS.gene26493:intron | 30.0% | |
| AACTCTTCAAAGGAAACTAA+TGG | + | chr7.3:7760149-7760168 | MS.gene26493:CDS | 30.0% | |
| AAGTTCCAATATCAGATTCA+AGG | - | chr7.3:7760127-7760146 | None:intergenic | 30.0% | |
| ACTATAGGAACTCTTTCAAA+TGG | + | chr7.3:7758624-7758643 | MS.gene26493:intron | 30.0% | |
| AGACATGTTTCACTTATGAT+TGG | + | chr7.3:7758999-7759018 | MS.gene26493:intron | 30.0% | |
| AGTATAAGATCATTGAAGCT+TGG | - | chr7.3:7759763-7759782 | None:intergenic | 30.0% | |
| ATACTTTGTACAGATCTACA+AGG | - | chr7.3:7759034-7759053 | None:intergenic | 30.0% | |
| ATCATCAGATGTCATGTTAA+GGG | - | chr7.3:7759262-7759281 | None:intergenic | 30.0% | |
| ATGCATTTACTCAAGAAACA+AGG | + | chr7.3:7759490-7759509 | MS.gene26493:intron | 30.0% | |
| CAACTACCTCAAAAAATGTA+TGG | - | chr7.3:7758220-7758239 | None:intergenic | 30.0% | |
| CCAATGAAAAGGATTTGATT+TGG | - | chr7.3:7757648-7757667 | None:intergenic | 30.0% | |
| CCATAAAATTGATCTGCATA+AGG | - | chr7.3:7759057-7759076 | None:intergenic | 30.0% | |
| CTACAATCAAATTACAAACC+TGG | - | chr7.3:7757775-7757794 | None:intergenic | 30.0% | |
| GGAAGTAAAGTGCATAAATT+CGG | + | chr7.3:7760059-7760078 | MS.gene26493:CDS | 30.0% | |
| GTTTATCTGAAAGAACATGA+TGG | + | chr7.3:7757514-7757533 | MS.gene26493:CDS | 30.0% | |
| TACTTTGTACAGATCTACAA+GGG | - | chr7.3:7759033-7759052 | None:intergenic | 30.0% | |
| TGCTTAGCATTCACATAAAT+AGG | - | chr7.3:7759288-7759307 | None:intergenic | 30.0% | |
| TGGAACTTTAAACTCTTCAA+AGG | + | chr7.3:7760139-7760158 | MS.gene26493:CDS | 30.0% | |
| TTATAGATTTAGGTCCTGTT+TGG | - | chr7.3:7758158-7758177 | None:intergenic | 30.0% | |
| TTCACTCCAATAATGCAAAA+TGG | + | chr7.3:7758520-7758539 | MS.gene26493:intron | 30.0% | |
| TTCCAATAATCGAACAAAAG+AGG | - | chr7.3:7758717-7758736 | None:intergenic | 30.0% | |
| TTCTCCAATATAAGTCAGTT+GGG | - | chr7.3:7758292-7758311 | None:intergenic | 30.0% | |
| TTTCTCCAATATAAGTCAGT+TGG | - | chr7.3:7758293-7758312 | None:intergenic | 30.0% | |
| ! | CCAAATCAAATCCTTTTCAT+TGG | + | chr7.3:7757645-7757664 | MS.gene26493:CDS | 30.0% |
| ! | CCTTATGCAGATCAATTTTA+TGG | + | chr7.3:7759054-7759073 | MS.gene26493:CDS | 30.0% |
| ! | TACTAAATCATCAGAGTACT+TGG | - | chr7.3:7758969-7758988 | None:intergenic | 30.0% |
| !! | AGACTATTTGCTATAGCTTA+CGG | + | chr7.3:7757999-7758018 | MS.gene26493:intron | 30.0% |
| !!! | AGGGACCATTTTTTATTGTT+TGG | + | chr7.3:7758599-7758618 | MS.gene26493:intron | 30.0% |
| !!! | CATACATTTTTTGAGGTAGT+TGG | + | chr7.3:7758218-7758237 | MS.gene26493:intron | 30.0% |
| !!! | TTTAAGGGTTTTGAACTGTA+GGG | - | chr7.3:7758445-7758464 | None:intergenic | 30.0% |
| !!! | TTTTAAGGGTTTTGAACTGT+AGG | - | chr7.3:7758446-7758465 | None:intergenic | 30.0% |
| AACACAAAGAAATCTGCCAA+TGG | + | chr7.3:7760023-7760042 | MS.gene26493:CDS | 35.0% | |
| AATCACTTTACCATCTTTCC+AGG | + | chr7.3:7757754-7757773 | MS.gene26493:CDS | 35.0% | |
| ACAATGGAATCATTAGACGT+CGG | + | chr7.3:7759310-7759329 | MS.gene26493:CDS | 35.0% | |
| ACCTCTGATCCAGAAATATT+TGG | - | chr7.3:7760182-7760201 | None:intergenic | 35.0% | |
| ACTTCAATGAAGACAGAATC+TGG | - | chr7.3:7759410-7759429 | None:intergenic | 35.0% | |
| ACTTTGTACAGATCTACAAG+GGG | - | chr7.3:7759032-7759051 | None:intergenic | 35.0% | |
| CATCATCAGATGTCATGTTA+AGG | - | chr7.3:7759263-7759282 | None:intergenic | 35.0% | |
| CCTCTGATCCAGAAATATTT+GGG | - | chr7.3:7760181-7760200 | None:intergenic | 35.0% | |
| CTGTAAGTGTTTATCCAAAC+AGG | + | chr7.3:7758141-7758160 | MS.gene26493:intron | 35.0% | |
| CTTAACATGACATCTGATGA+TGG | + | chr7.3:7759261-7759280 | MS.gene26493:CDS | 35.0% | |
| CTTCAATGAAGACAGAATCT+GGG | - | chr7.3:7759409-7759428 | None:intergenic | 35.0% | |
| CTTCGTTGAGATTATTGAAG+AGG | + | chr7.3:7758328-7758347 | MS.gene26493:intron | 35.0% | |
| CTTGAGTAAATGCATCCTAT+TGG | - | chr7.3:7759485-7759504 | None:intergenic | 35.0% | |
| GAACTCCTTGAATCTGATAT+TGG | + | chr7.3:7760119-7760138 | MS.gene26493:CDS | 35.0% | |
| GTAATTTCAGGAACTGAATG+AGG | - | chr7.3:7758547-7758566 | None:intergenic | 35.0% | |
| GTCAAGCGTTTGTACTTAAT+AGG | - | chr7.3:7757806-7757825 | None:intergenic | 35.0% | |
| TCATCAGATGTCATGTTAAG+GGG | - | chr7.3:7759261-7759280 | None:intergenic | 35.0% | |
| TGGAAAGATGGTAAAGTGAT+TGG | - | chr7.3:7757755-7757774 | None:intergenic | 35.0% | |
| TTGTAGAGAAGTCTTACCAT+AGG | - | chr7.3:7758897-7758916 | None:intergenic | 35.0% | |
| TTTGGATCTCAATCCCTTTA+TGG | + | chr7.3:7757610-7757629 | MS.gene26493:CDS | 35.0% | |
| ! | GAATTGCACACAATTTTGTG+GGG | + | chr7.3:7757536-7757555 | MS.gene26493:CDS | 35.0% |
| ! | GGAATTGCACACAATTTTGT+GGG | + | chr7.3:7757535-7757554 | MS.gene26493:CDS | 35.0% |
| ! | TGAGGACCATTTTGCATTAT+TGG | - | chr7.3:7758529-7758548 | None:intergenic | 35.0% |
| ! | TGCCTCTTTTGTTCGATTAT+TGG | + | chr7.3:7758712-7758731 | MS.gene26493:intron | 35.0% |
| ! | TGGAATTGCACACAATTTTG+TGG | + | chr7.3:7757534-7757553 | MS.gene26493:CDS | 35.0% |
| !! | GAAAGTTGGTATGTCAAGTA+CGG | - | chr7.3:7758753-7758772 | None:intergenic | 35.0% |
| !!! | AGCGATTTTTGAGTCATCAA+AGG | - | chr7.3:7759845-7759864 | None:intergenic | 35.0% |
| AAGAAATCTGCCAATGGAGA+TGG | + | chr7.3:7760029-7760048 | MS.gene26493:CDS | 40.0% | |
| ACTGAACATGTGTTTGGGAA+AGG | + | chr7.3:7757724-7757743 | MS.gene26493:CDS | 40.0% | |
| AGAAGATCCAAGGTGATTGA+CGG | - | chr7.3:7760243-7760262 | None:intergenic | 40.0% | |
| AGAGGAACTGAACATGTGTT+TGG | + | chr7.3:7757718-7757737 | MS.gene26493:CDS | 40.0% | |
| AGTCAACAATTGCAGTTCAG+TGG | + | chr7.3:7760083-7760102 | MS.gene26493:CDS | 40.0% | |
| ATTGCTTAGTTGCAGCAAGT+TGG | - | chr7.3:7757693-7757712 | None:intergenic | 40.0% | |
| CCAATATAAGTCAGTTGGGA+GGG | - | chr7.3:7758288-7758307 | None:intergenic | 40.0% | |
| CTGAACATGTGTTTGGGAAA+GGG | + | chr7.3:7757725-7757744 | MS.gene26493:CDS | 40.0% | |
| GAGGAACTGAACATGTGTTT+GGG | + | chr7.3:7757719-7757738 | MS.gene26493:CDS | 40.0% | |
| GTAGGGACTAAAAGTGAACA+TGG | - | chr7.3:7758428-7758447 | None:intergenic | 40.0% | |
| GTGAATGCTAAGCAGTACAA+TGG | + | chr7.3:7759294-7759313 | MS.gene26493:CDS | 40.0% | |
| TATGGACTCATCTCAACCTA+TGG | + | chr7.3:7759072-7759091 | MS.gene26493:CDS | 40.0% | |
| TCCAATATAAGTCAGTTGGG+AGG | - | chr7.3:7758289-7758308 | None:intergenic | 40.0% | |
| TGCAATGATATGGCTGTATG+AGG | - | chr7.3:7758825-7758844 | None:intergenic | 40.0% | |
| TGTTATCATGCCGACCAAAT+GGG | + | chr7.3:7760301-7760320 | MS.gene26493:CDS | 40.0% | |
| TTTGTGACCAAGTACAGCTT+TGG | - | chr7.3:7759346-7759365 | None:intergenic | 40.0% | |
| TTTGTGGGGCAATTATCATC+TGG | + | chr7.3:7757550-7757569 | MS.gene26493:CDS | 40.0% | |
| ! | CACTTGAATTTGAGGTCCAT+AGG | - | chr7.3:7759091-7759110 | None:intergenic | 40.0% |
| ! | TCCAGTTTTACCATCTCCAT+TGG | - | chr7.3:7760042-7760061 | None:intergenic | 40.0% |
| !! | AGGTGACTAGTTTGTATTCG+AGG | + | chr7.3:7760198-7760217 | MS.gene26493:CDS | 40.0% |
| !! | CCCAAATATTTCTGGATCAG+AGG | + | chr7.3:7760178-7760197 | MS.gene26493:CDS | 40.0% |
| !! | GGTGACTAGTTTGTATTCGA+GGG | + | chr7.3:7760199-7760218 | MS.gene26493:CDS | 40.0% |
| !! | GTGACTAGTTTGTATTCGAG+GGG | + | chr7.3:7760200-7760219 | MS.gene26493:CDS | 40.0% |
| AATCCCAGCTCAAAGCGATT+TGG | - | chr7.3:7758867-7758886 | None:intergenic | 45.0% | |
| ACATAGACACACACGAACAC+TGG | + | chr7.3:7757829-7757848 | MS.gene26493:intron | 45.0% | |
| AGCTTTACCGTCAATCACCT+TGG | + | chr7.3:7760233-7760252 | MS.gene26493:CDS | 45.0% | |
| AGTTGGTCAACAGCAGACAT+AGG | - | chr7.3:7757676-7757695 | None:intergenic | 45.0% | |
| ATAATTCAGCTGCTGCACCA+TGG | + | chr7.3:7757578-7757597 | MS.gene26493:CDS | 45.0% | |
| ATCCCAGCTCAAAGCGATTT+GGG | - | chr7.3:7758866-7758885 | None:intergenic | 45.0% | |
| CAATCCCTTTATGGAGAGTC+TGG | + | chr7.3:7757619-7757638 | MS.gene26493:CDS | 45.0% | |
| CATAGGTGGCTCCAATGAAA+AGG | - | chr7.3:7757659-7757678 | None:intergenic | 45.0% | |
| GATCCAAAACTACTCCACCA+TGG | - | chr7.3:7757598-7757617 | None:intergenic | 45.0% | |
| GCAACTAAGCAATCTGCTAG+AGG | + | chr7.3:7757700-7757719 | MS.gene26493:CDS | 45.0% | |
| GCCAATGGAGATGGTAAAAC+TGG | + | chr7.3:7760038-7760057 | MS.gene26493:CDS | 45.0% | |
| GGAAGCAGCCCAAATATTTC+TGG | + | chr7.3:7760170-7760189 | MS.gene26493:CDS | 45.0% | |
| GTGTTATCATGCCGACCAAA+TGG | + | chr7.3:7760300-7760319 | MS.gene26493:CDS | 45.0% | |
| TAGAGTGGACAGAAGATCCA+AGG | - | chr7.3:7760253-7760272 | None:intergenic | 45.0% | |
| TCTATGGCAGACATGATCGA+TGG | + | chr7.3:7760269-7760288 | MS.gene26493:CDS | 45.0% | |
| TGGATCTTCTGTCCACTCTA+TGG | + | chr7.3:7760253-7760272 | MS.gene26493:CDS | 45.0% | |
| ! | AATCGCTTTGAGCTGGGATT+TGG | + | chr7.3:7758867-7758886 | MS.gene26493:CDS | 45.0% |
| ! | CAAAGCGATTTGGGGTATCA+GGG | - | chr7.3:7758857-7758876 | None:intergenic | 45.0% |
| ! | CCCTCCCAACTGACTTATAT+TGG | + | chr7.3:7758285-7758304 | MS.gene26493:intron | 45.0% |
| ! | GAATCTGGGACTATCATGCA+TGG | - | chr7.3:7759395-7759414 | None:intergenic | 45.0% |
| ! | GACTGCTGACTGCAATGATA+TGG | - | chr7.3:7758835-7758854 | None:intergenic | 45.0% |
| ! | TCAAAGCGATTTGGGGTATC+AGG | - | chr7.3:7758858-7758877 | None:intergenic | 45.0% |
| !!! | AAATAATAAAATACTTTTTA+AGG | - | chr7.3:7758461-7758480 | None:intergenic | 5.0% |
| !!! | AATAATAAAATACTTTTTAA+GGG | - | chr7.3:7758460-7758479 | None:intergenic | 5.0% |
| AAACGACCACCACATCCTCT+CGG | - | chr7.3:7759999-7760018 | None:intergenic | 50.0% | |
| ACCAAATGGGTAACAGCAGC+TGG | + | chr7.3:7760314-7760333 | MS.gene26493:CDS | 50.0% | |
| ATGGCAGACATGATCGATGG+TGG | + | chr7.3:7760272-7760291 | MS.gene26493:CDS | 50.0% | |
| CGATCATGTCTGCCATAGAG+TGG | - | chr7.3:7760268-7760287 | None:intergenic | 50.0% | |
| GCCACCAGACTCTCCATAAA+GGG | - | chr7.3:7757626-7757645 | None:intergenic | 50.0% | |
| GCTGCTGTTACCCATTTGGT+CGG | - | chr7.3:7760314-7760333 | None:intergenic | 50.0% | |
| TCCCAGCTCAAAGCGATTTG+GGG | - | chr7.3:7758865-7758884 | None:intergenic | 50.0% | |
| TCCCTTTATGGAGAGTCTGG+TGG | + | chr7.3:7757622-7757641 | MS.gene26493:CDS | 50.0% | |
| TGGCAGACATGATCGATGGT+GGG | + | chr7.3:7760273-7760292 | MS.gene26493:CDS | 50.0% | |
| TGGTCAACAGCAGACATAGG+TGG | - | chr7.3:7757673-7757692 | None:intergenic | 50.0% | |
| ! | ACCCCAAATCGCTTTGAGCT+GGG | + | chr7.3:7758861-7758880 | MS.gene26493:CDS | 50.0% |
| ! | GCTGGGATTTGGTCAACCTA+TGG | + | chr7.3:7758878-7758897 | MS.gene26493:CDS | 50.0% |
| ! | TACCCCAAATCGCTTTGAGC+TGG | + | chr7.3:7758860-7758879 | MS.gene26493:CDS | 50.0% |
| !! | GCACCATGGTGGAGTAGTTT+TGG | + | chr7.3:7757592-7757611 | MS.gene26493:CDS | 50.0% |
| ATGGCGTGACTCGTGCATGT+AGG | - | chr7.3:7759958-7759977 | None:intergenic | 55.0% | |
| ATTCAGCTGCTGCACCATGG+TGG | + | chr7.3:7757581-7757600 | MS.gene26493:CDS | 55.0% | |
| CACGCCATCTCCATGCAATG+CGG | + | chr7.3:7759970-7759989 | MS.gene26493:CDS | 55.0% | |
| GCCAGCTGCTGTTACCCATT+TGG | - | chr7.3:7760318-7760337 | None:intergenic | 55.0% | |
| GGCCACCAGACTCTCCATAA+AGG | - | chr7.3:7757627-7757646 | None:intergenic | 55.0% | |
| TGGCGTGACTCGTGCATGTA+GGG | - | chr7.3:7759957-7759976 | None:intergenic | 55.0% | |
| ! | ACCAAGTACAGCTTTGGCGC+GGG | - | chr7.3:7759340-7759359 | None:intergenic | 55.0% |
| ! | GACCAAGTACAGCTTTGGCG+CGG | - | chr7.3:7759341-7759360 | None:intergenic | 55.0% |
| GTCGCCGCATTGCATGGAGA+TGG | - | chr7.3:7759977-7759996 | None:intergenic | 60.0% | |
| TCCCGCGCCAAAGCTGTACT+TGG | + | chr7.3:7759336-7759355 | MS.gene26493:CDS | 60.0% | |
| !! | GACATGATCGATGGTGGGCG+TGG | + | chr7.3:7760278-7760297 | MS.gene26493:CDS | 60.0% |
| ATGCGGCGACCGAGAGGATG+TGG | + | chr7.3:7759987-7760006 | MS.gene26493:CDS | 65.0% | |
| CATGCAATGCGGCGACCGAG+AGG | + | chr7.3:7759981-7760000 | MS.gene26493:CDS | 65.0% | |
| CTCTCGGTCGCCGCATTGCA+TGG | - | chr7.3:7759983-7760002 | None:intergenic | 65.0% | |
| CGGCGACCGAGAGGATGTGG+TGG | + | chr7.3:7759990-7760009 | MS.gene26493:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 7757499 | 7760361 | 7757499 | ID=MS.gene26493 |
| chr7.3 | mRNA | 7757499 | 7760361 | 7757499 | ID=MS.gene26493.t1;Parent=MS.gene26493 |
| chr7.3 | exon | 7757499 | 7757775 | 7757499 | ID=MS.gene26493.t1.exon1;Parent=MS.gene26493.t1 |
| chr7.3 | CDS | 7757499 | 7757775 | 7757499 | ID=cds.MS.gene26493.t1;Parent=MS.gene26493.t1 |
| chr7.3 | exon | 7758790 | 7758899 | 7758790 | ID=MS.gene26493.t1.exon2;Parent=MS.gene26493.t1 |
| chr7.3 | CDS | 7758790 | 7758899 | 7758790 | ID=cds.MS.gene26493.t1;Parent=MS.gene26493.t1 |
| chr7.3 | exon | 7759039 | 7759107 | 7759039 | ID=MS.gene26493.t1.exon3;Parent=MS.gene26493.t1 |
| chr7.3 | CDS | 7759039 | 7759107 | 7759039 | ID=cds.MS.gene26493.t1;Parent=MS.gene26493.t1 |
| chr7.3 | exon | 7759243 | 7759383 | 7759243 | ID=MS.gene26493.t1.exon4;Parent=MS.gene26493.t1 |
| chr7.3 | CDS | 7759243 | 7759383 | 7759243 | ID=cds.MS.gene26493.t1;Parent=MS.gene26493.t1 |
| chr7.3 | exon | 7759954 | 7760361 | 7759954 | ID=MS.gene26493.t1.exon5;Parent=MS.gene26493.t1 |
| chr7.3 | CDS | 7759954 | 7760361 | 7759954 | ID=cds.MS.gene26493.t1;Parent=MS.gene26493.t1 |
| Gene Sequence |
| Protein sequence |
