Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007853.t1 | XP_003628446.1 | 100 | 476 | 0 | 0 | 1 | 476 | 1 | 476 | 1.00E-264 | 922.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007853.t1 | Q54XK2 | 72.5 | 472 | 129 | 1 | 4 | 475 | 2 | 472 | 4.5e-197 | 688.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007853.t1 | G7LBX9 | 100.0 | 476 | 0 | 0 | 1 | 476 | 1 | 476 | 7.3e-265 | 922.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007853 | MS.gene89613 | PPI |
| MS.gene032325 | MS.gene007853 | PPI |
| MS.gene007853 | MS.gene37094 | PPI |
| MS.gene007853 | MS.gene32242 | PPI |
| MS.gene007853 | MS.gene032325 | PPI |
| MS.gene007853 | MS.gene007852 | PPI |
| MS.gene38994 | MS.gene007853 | PPI |
| MS.gene02479 | MS.gene007853 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007853.t1 | MTR_8g058330 | 100.000 | 476 | 0 | 0 | 1 | 476 | 1 | 476 | 0.0 | 964 |
| MS.gene007853.t1 | MTR_8g076770 | 99.580 | 476 | 2 | 0 | 1 | 476 | 1 | 476 | 0.0 | 962 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007853.t1 | AT2G34250 | 93.697 | 476 | 29 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene007853.t1 | AT2G34250 | 93.697 | 476 | 29 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene007853.t1 | AT2G34250 | 93.697 | 476 | 29 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene007853.t1 | AT1G29310 | 93.487 | 476 | 30 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene007853.t1 | AT1G29310 | 93.487 | 476 | 30 | 1 | 1 | 476 | 1 | 475 | 0.0 | 910 |
| MS.gene007853.t1 | AT1G78720 | 90.947 | 475 | 42 | 1 | 1 | 475 | 1 | 474 | 0.0 | 889 |
| MS.gene007853.t1 | AT1G78720 | 90.947 | 475 | 42 | 1 | 1 | 475 | 1 | 474 | 0.0 | 889 |
| MS.gene007853.t1 | AT1G78720 | 90.526 | 475 | 42 | 2 | 1 | 475 | 1 | 472 | 0.0 | 879 |
Find 133 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGATGGGTGGTGGGTTT+AGG | 0.171243 | 8.1:-53294470 | None:intergenic |
| CGGGCATTCTTTGACCTTAC+AGG | 0.191772 | 8.1:+53293456 | None:intergenic |
| AGCTCCCCGACCACTGTTAA+TGG | 0.203929 | 8.1:+53293653 | None:intergenic |
| GATGCAGTGAAAACATTATA+TGG | 0.228906 | 8.1:-53293695 | MS.gene007853:intron |
| TAAGATGGGTGGTGGGTTTA+GGG | 0.278239 | 8.1:-53294469 | None:intergenic |
| CTGTCCGCGGTCTGAACTTC+AGG | 0.283558 | 8.1:+53294411 | None:intergenic |
| GCCAGCGAGCTTGGTTTCTT+TGG | 0.285931 | 8.1:-53292180 | MS.gene007853:CDS |
| TTCATGGGTGCAATTGGTTC+CGG | 0.294173 | 8.1:-53292267 | MS.gene007853:CDS |
| ATTCCCACTGCTGCTGCATT+TGG | 0.313275 | 8.1:-53292327 | MS.gene007853:CDS |
| CTTGGAAGTATATCACAATT+AGG | 0.332365 | 8.1:+53293496 | None:intergenic |
| TAATAATAATTACCAGATAT+TGG | 0.334766 | 8.1:+53293803 | None:intergenic |
| TATTCATTGCCACCAATATC+TGG | 0.338652 | 8.1:-53293815 | MS.gene007853:intron |
| GACAGTATTGGCAGATTTCA+TGG | 0.346559 | 8.1:-53292283 | MS.gene007853:CDS |
| TGGTCTTGTAATGCAGCTTT+TGG | 0.346972 | 8.1:-53294199 | MS.gene007853:CDS |
| AAGAGCAGACTGAAGAATAA+TGG | 0.359294 | 8.1:+53293383 | None:intergenic |
| GAGGTGTAAAACAGTTTGAT+TGG | 0.363102 | 8.1:+53293414 | None:intergenic |
| TCATGGGTGCAATTGGTTCC+GGG | 0.364241 | 8.1:-53292266 | MS.gene007853:CDS |
| AAAGGCTATGGTTTGGGATC+TGG | 0.365013 | 8.1:-53293846 | MS.gene007853:CDS |
| TTAGATGAGCTCCTTCAAAA+AGG | 0.368354 | 8.1:-53293864 | MS.gene007853:CDS |
| CCCACTGCTGCTGCATTTGG+AGG | 0.371658 | 8.1:-53292324 | MS.gene007853:CDS |
| TGTAGTCAGCTTCCTCTGTA+TGG | 0.391279 | 8.1:-53294327 | MS.gene007853:CDS |
| TTCAAACCGTGGAACTGTTA+TGG | 0.394615 | 8.1:-53294250 | MS.gene007853:CDS |
| GCAGATTTCATGGGTGCAAT+TGG | 0.395146 | 8.1:-53292273 | MS.gene007853:CDS |
| TGTTACTGCAAGTAATATTC+CGG | 0.397434 | 8.1:+53292242 | None:intergenic |
| GCATTTGGAGGCATGTGTAT+TGG | 0.399045 | 8.1:-53292312 | MS.gene007853:CDS |
| CCGACCACTGTTAATGGTTG+TGG | 0.403048 | 8.1:+53293659 | None:intergenic |
| TTAGGGTACTTCACTTAGTA+AGG | 0.406793 | 8.1:-53294452 | MS.gene007853:CDS |
| CAACTTGCAGGAACAACAAA+TGG | 0.409211 | 8.1:-53292400 | MS.gene007853:intron |
| TATATAACCTTCTCTCTAAA+CGG | 0.415312 | 8.1:+53294381 | None:intergenic |
| AAAACTTGGATTGAAGTCTC+TGG | 0.424950 | 8.1:-53292882 | MS.gene007853:CDS |
| AATGGTAATGCCTGGTCATC+GGG | 0.426397 | 8.1:-53292382 | MS.gene007853:CDS |
| CAGACAAGGTTCGTGCCCTT+AGG | 0.428797 | 8.1:-53293581 | MS.gene007853:CDS |
| AAAGAATGCCCGTGGACAGC+AGG | 0.432758 | 8.1:-53293445 | MS.gene007853:CDS |
| AAGGAAAGAGCCAGCGAGCT+TGG | 0.436512 | 8.1:-53292189 | MS.gene007853:CDS |
| CTGGGAAATGAAGTAGAGAT+TGG | 0.437679 | 8.1:+53293356 | None:intergenic |
| AGAGCAGACTGAAGAATAAT+GGG | 0.438369 | 8.1:+53293384 | None:intergenic |
| TTGTGAATCTGTTGGGCAAA+TGG | 0.440455 | 8.1:-53293214 | MS.gene007853:CDS |
| TGAAATCTGCCAATACTGTC+AGG | 0.442633 | 8.1:+53292286 | None:intergenic |
| TATTCTGGTAAGATGGGTGG+TGG | 0.445656 | 8.1:-53294477 | None:intergenic |
| GCTAGCAGATTTGTGACATT+GGG | 0.446952 | 8.1:+53293534 | None:intergenic |
| CGTGGAACTGTTATGGAGCT+TGG | 0.452315 | 8.1:-53294243 | MS.gene007853:CDS |
| AGACAAGGTTCGTGCCCTTA+GGG | 0.456049 | 8.1:-53293580 | MS.gene007853:CDS |
| GCTGTTGCCTATGTTCTGTC+TGG | 0.456478 | 8.1:-53293975 | MS.gene007853:CDS |
| CTTGGCATCTTGATAGCTGT+TGG | 0.461242 | 8.1:-53294002 | MS.gene007853:CDS |
| GGTGCAATTGGTTCCGGGAC+CGG | 0.461353 | 8.1:-53292261 | MS.gene007853:CDS |
| CAGGTGCAGATCCATTCTAT+TGG | 0.462335 | 8.1:-53294290 | MS.gene007853:CDS |
| CACAACCATTAACAGTGGTC+GGG | 0.464038 | 8.1:-53293658 | MS.gene007853:CDS |
| AAATGGAAGGAATCTGAATA+TGG | 0.470788 | 8.1:-53293197 | MS.gene007853:CDS |
| CGACCACTGTTAATGGTTGT+GGG | 0.480413 | 8.1:+53293660 | None:intergenic |
| TAGTATGCAATGCCACCAAC+AGG | 0.483522 | 8.1:+53293158 | None:intergenic |
| TGGTCGGGGAGCTGAATTTG+AGG | 0.485535 | 8.1:-53293643 | MS.gene007853:CDS |
| CTGTTCTAGTAATCAACAAA+TGG | 0.485839 | 8.1:+53293601 | None:intergenic |
| CAGCAGCAGTGGGAATATAT+CGG | 0.486111 | 8.1:+53292334 | None:intergenic |
| TCAGGAAGGAATGATAGAAA+TGG | 0.489436 | 8.1:+53294429 | None:intergenic |
| AGATGTTGCCAAGCAGTTGA+AGG | 0.492024 | 8.1:-53292847 | MS.gene007853:intron |
| TACGGTAGTGTAGGCCAGCT+TGG | 0.494011 | 8.1:-53293948 | MS.gene007853:CDS |
| GCAAAACCACACGGAAACCT+TGG | 0.494750 | 8.1:+53293478 | None:intergenic |
| ACAAGACCAGAAGTGACAAT+GGG | 0.497571 | 8.1:+53294213 | None:intergenic |
| AACTTCATTGTGAATCTGTT+GGG | 0.502266 | 8.1:-53293221 | MS.gene007853:CDS |
| AACGGTGCACAGAAGCTACT+TGG | 0.503218 | 8.1:-53294020 | MS.gene007853:CDS |
| AAATTTGATTCCCGATGACC+AGG | 0.504394 | 8.1:+53292372 | None:intergenic |
| TATGGAATACACTCAACAAC+AGG | 0.504696 | 8.1:-53294309 | MS.gene007853:CDS |
| AAATGGTAATGCCTGGTCAT+CGG | 0.505999 | 8.1:-53292383 | MS.gene007853:CDS |
| GCCGGTAAAATGCTTCCCTA+AGG | 0.507430 | 8.1:+53293565 | None:intergenic |
| ATAACACGCATCCAATAGAA+TGG | 0.515174 | 8.1:+53294279 | None:intergenic |
| CTGAAGAATAATGGGCATGT+TGG | 0.515561 | 8.1:+53293392 | None:intergenic |
| AGCTAGCAGATTTGTGACAT+TGG | 0.520122 | 8.1:+53293533 | None:intergenic |
| TGGCATTTCCCACTCCAAGC+TGG | 0.520195 | 8.1:+53293934 | None:intergenic |
| ACCAAAGAAACCAAGCTCGC+TGG | 0.523159 | 8.1:+53292179 | None:intergenic |
| GCCTCCAAATGCAGCAGCAG+TGG | 0.524049 | 8.1:+53292323 | None:intergenic |
| TGCAAGTAATATTCCGGTCC+CGG | 0.529370 | 8.1:+53292248 | None:intergenic |
| CAATCTCTACTTCATTTCCC+AGG | 0.533946 | 8.1:-53293355 | MS.gene007853:intron |
| TAAACATATGACAATGATAC+CGG | 0.537182 | 8.1:+53293884 | None:intergenic |
| CTAATTGTGATATACTTCCA+AGG | 0.539046 | 8.1:-53293495 | MS.gene007853:CDS |
| GGTCACTCTATTCCTGTTGG+TGG | 0.542254 | 8.1:-53293170 | MS.gene007853:CDS |
| CAGTTCCACGGTTTGAAGCA+AGG | 0.542857 | 8.1:+53294256 | None:intergenic |
| CTGAAGTTCAGACCGCGGAC+AGG | 0.547046 | 8.1:-53294410 | MS.gene007853:CDS |
| AAACTTCATTGTGAATCTGT+TGG | 0.548669 | 8.1:-53293222 | MS.gene007853:CDS |
| ACAGTATTGGCAGATTTCAT+GGG | 0.552268 | 8.1:-53292282 | MS.gene007853:CDS |
| GAACAATGCATGGAAAGGAT+TGG | 0.553602 | 8.1:+53292944 | None:intergenic |
| CCACAACCATTAACAGTGGT+CGG | 0.553676 | 8.1:-53293659 | MS.gene007853:CDS |
| ACTATATAACTGCACCCTCT+AGG | 0.554045 | 8.1:-53293139 | MS.gene007853:intron |
| GGTGGTCACTCTATTCCTGT+TGG | 0.554775 | 8.1:-53293173 | MS.gene007853:CDS |
| GAACAACAAATGGTAATGCC+TGG | 0.556580 | 8.1:-53292390 | MS.gene007853:CDS |
| GTACTTTGAGACATTTGAGA+AGG | 0.557787 | 8.1:-53292208 | MS.gene007853:CDS |
| AATCTGTACCTTCAACTGCT+TGG | 0.557872 | 8.1:+53292839 | None:intergenic |
| AGTGTAGGCCAGCTTGGAGT+GGG | 0.558950 | 8.1:-53293942 | MS.gene007853:CDS |
| AAGAATAATGGGCATGTTGG+AGG | 0.559009 | 8.1:+53293395 | None:intergenic |
| GGTCGGGGAGCTGAATTTGA+GGG | 0.561143 | 8.1:-53293642 | MS.gene007853:CDS |
| GATATGAACCCTGCTGTCCA+CGG | 0.564388 | 8.1:+53293436 | None:intergenic |
| GAAAGTGCCGTTTAGAGAGA+AGG | 0.569270 | 8.1:-53294388 | MS.gene007853:CDS |
| CCGGTAAAATGCTTCCCTAA+GGG | 0.569426 | 8.1:+53293566 | None:intergenic |
| ATATGAACCCTGCTGTCCAC+GGG | 0.572002 | 8.1:+53293437 | None:intergenic |
| TATGTTCTGTCTGGAATGTA+CGG | 0.576377 | 8.1:-53293966 | MS.gene007853:CDS |
| AAAATTCTCTATTACCTAGA+GGG | 0.576749 | 8.1:+53293125 | None:intergenic |
| TAGTGTAGGCCAGCTTGGAG+TGG | 0.578524 | 8.1:-53293943 | MS.gene007853:CDS |
| TGACATTGGGAAGATTCTGC+CGG | 0.580213 | 8.1:+53293547 | None:intergenic |
| GTTATCCTTGCTTCAAACCG+TGG | 0.587811 | 8.1:-53294261 | MS.gene007853:CDS |
| ACACAAGGTAGAACAATGCA+TGG | 0.589874 | 8.1:+53292934 | None:intergenic |
| ATTCTGGTAAGATGGGTGGT+GGG | 0.592675 | 8.1:-53294476 | None:intergenic |
| AAAAGAGCTGGAGGATGATG+AGG | 0.594915 | 8.1:+53293910 | None:intergenic |
| AGGTAGAACAATGCATGGAA+AGG | 0.595832 | 8.1:+53292939 | None:intergenic |
| ACCTTACAGGCAAAACCACA+CGG | 0.598007 | 8.1:+53293469 | None:intergenic |
| TACAAGACCAGAAGTGACAA+TGG | 0.598549 | 8.1:+53294212 | None:intergenic |
| CAAGCTCCATAACAGTTCCA+CGG | 0.599214 | 8.1:+53294244 | None:intergenic |
| CCTCCAAATGCAGCAGCAGT+GGG | 0.602091 | 8.1:+53292324 | None:intergenic |
| TCTGGAATGTACGGTAGTGT+AGG | 0.602546 | 8.1:-53293957 | MS.gene007853:CDS |
| TAATAATTACCAGATATTGG+TGG | 0.605322 | 8.1:+53293806 | None:intergenic |
| TATTGGCGCCCTGACAGTAT+TGG | 0.608198 | 8.1:-53292295 | MS.gene007853:CDS |
| CATCTTGATAGCTGTTGGAG+AGG | 0.612529 | 8.1:-53293997 | MS.gene007853:CDS |
| AAGGAATCTGAATATGGAGG+TGG | 0.616063 | 8.1:-53293191 | MS.gene007853:CDS |
| ACAACCATTAACAGTGGTCG+GGG | 0.617144 | 8.1:-53293657 | MS.gene007853:CDS |
| GAAATCTGCCAATACTGTCA+GGG | 0.626006 | 8.1:+53292287 | None:intergenic |
| GAATCTGTTGGGCAAATGGA+AGG | 0.629594 | 8.1:-53293210 | MS.gene007853:CDS |
| CCGCGGTCTGAACTTCAGGA+AGG | 0.633970 | 8.1:+53294415 | None:intergenic |
| ACAAGAGAGCACGATCCTCA+CGG | 0.636825 | 8.1:+53294142 | None:intergenic |
| AAGAATGCCCGTGGACAGCA+GGG | 0.641052 | 8.1:-53293444 | MS.gene007853:CDS |
| GTACATTCCAGACAGAACAT+AGG | 0.651614 | 8.1:+53293968 | None:intergenic |
| GAGCTGGAGGATGATGAGGA+TGG | 0.654773 | 8.1:+53293914 | None:intergenic |
| GTTGAGTGTATTCCATACAG+AGG | 0.661533 | 8.1:+53294315 | None:intergenic |
| AAACGGCACTTTCCTGTCCG+CGG | 0.663801 | 8.1:+53294398 | None:intergenic |
| GTAAGGTCAAAGAATGCCCG+TGG | 0.666399 | 8.1:-53293453 | MS.gene007853:CDS |
| CTGTATTCTGGTAAGATGGG+TGG | 0.668819 | 8.1:-53294480 | None:intergenic |
| GTTGATTACTAGAACAGACA+AGG | 0.670921 | 8.1:-53293595 | MS.gene007853:CDS |
| TGGAAGGAATCTGAATATGG+AGG | 0.673442 | 8.1:-53293194 | MS.gene007853:CDS |
| CCTTCCTGAAGTTCAGACCG+CGG | 0.684240 | 8.1:-53294415 | MS.gene007853:CDS |
| ATACTTCCAAGGTTTCCGTG+TGG | 0.697491 | 8.1:-53293484 | MS.gene007853:CDS |
| AGTCCCACAACCATTAACAG+TGG | 0.707722 | 8.1:-53293663 | MS.gene007853:CDS |
| ATGCTGACAACATAAACACA+AGG | 0.717976 | 8.1:+53292919 | None:intergenic |
| CTGCTACACAGAAAATACAG+TGG | 0.721400 | 8.1:-53293245 | MS.gene007853:CDS |
| CAAGACCAGAAGTGACAATG+GGG | 0.741804 | 8.1:+53294214 | None:intergenic |
| AGTCGACAACAATGTCCGTG+AGG | 0.748642 | 8.1:-53294157 | MS.gene007853:CDS |
| AAGACCAGAAGTGACAATGG+GGG | 0.759683 | 8.1:+53294215 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATGATATTTATTGTTT+TGG | - | chr8.1:53293618-53293637 | MS.gene007853:CDS | 10.0% |
| !! | AAGTATAAATAAAACAATTG+GGG | + | chr8.1:53293993-53294012 | None:intergenic | 15.0% |
| !! | ACAAGTATAAATAAAACAAT+TGG | + | chr8.1:53293995-53294014 | None:intergenic | 15.0% |
| !! | CAAGTATAAATAAAACAATT+GGG | + | chr8.1:53293994-53294013 | None:intergenic | 15.0% |
| !! | CTGGTAATTATTATTATTTA+TGG | - | chr8.1:53292842-53292861 | MS.gene007853:intron | 15.0% |
| !! | GTATAATCATATTGTTAAAA+CGG | + | chr8.1:53293360-53293379 | None:intergenic | 15.0% |
| !! | TAATAATAATTACCAGATAT+TGG | + | chr8.1:53292838-53292857 | None:intergenic | 15.0% |
| !!! | TTTTAACAATATGATTATAC+TGG | - | chr8.1:53293360-53293379 | MS.gene007853:CDS | 15.0% |
| !! | CATATGTAAACTTCATAAAT+AGG | + | chr8.1:53293954-53293973 | None:intergenic | 20.0% |
| !! | TCTAATATACAAAAGTAGAT+TGG | - | chr8.1:53292564-53292583 | MS.gene007853:intron | 20.0% |
| !!! | GTATGAAATTTTTATCATGA+TGG | - | chr8.1:53294067-53294086 | MS.gene007853:intron | 20.0% |
| !!! | TATACTTTTATCTAGTACTA+AGG | - | chr8.1:53293855-53293874 | MS.gene007853:CDS | 20.0% |
| ! | AAAATTCTCTATTACCTAGA+GGG | + | chr8.1:53293516-53293535 | None:intergenic | 25.0% |
| ! | ACAAACAAGAAAAATGAAGA+GGG | + | chr8.1:53292294-53292313 | None:intergenic | 25.0% |
| ! | AGATCAAACAAAACTCAATT+AGG | + | chr8.1:53292547-53292566 | None:intergenic | 25.0% |
| ! | ATAATAAAACTCTACTACCT+GGG | + | chr8.1:53293303-53293322 | None:intergenic | 25.0% |
| ! | CCTAAAAAATAATCAGCAAA+TGG | + | chr8.1:53294020-53294039 | None:intergenic | 25.0% |
| ! | GGCAAAGAATATAATCTAAT+AGG | + | chr8.1:53293571-53293590 | None:intergenic | 25.0% |
| ! | TAAACATATGACAATGATAC+CGG | + | chr8.1:53292757-53292776 | None:intergenic | 25.0% |
| ! | TAATAATTACCAGATATTGG+TGG | + | chr8.1:53292835-53292854 | None:intergenic | 25.0% |
| ! | TACAAACAAGAAAAATGAAG+AGG | + | chr8.1:53292295-53292314 | None:intergenic | 25.0% |
| ! | TATATAACCTTCTCTCTAAA+CGG | + | chr8.1:53292260-53292279 | None:intergenic | 25.0% |
| ! | TTTAAGGAAGAATTCTCATT+TGG | - | chr8.1:53292921-53292940 | MS.gene007853:CDS | 25.0% |
| !! | TAGAGAATTTTCTATTCAGT+TGG | - | chr8.1:53293525-53293544 | MS.gene007853:CDS | 25.0% |
| !! | TATTATGGTATGTTGCTTAT+TGG | - | chr8.1:53293317-53293336 | MS.gene007853:intron | 25.0% |
| !! | TTGAAGCTTTATATCAAACT+AGG | + | chr8.1:53293592-53293611 | None:intergenic | 25.0% |
| !!! | CACTTCTTTAAAACTGAAAT+TGG | - | chr8.1:53294141-53294160 | MS.gene007853:intron | 25.0% |
| !!! | CCATTTGCTGATTATTTTTT+AGG | - | chr8.1:53294017-53294036 | MS.gene007853:CDS | 25.0% |
| AAACTTCATTGTGAATCTGT+TGG | - | chr8.1:53293416-53293435 | MS.gene007853:CDS | 30.0% | |
| AAATGGAAGGAATCTGAATA+TGG | - | chr8.1:53293441-53293460 | MS.gene007853:CDS | 30.0% | |
| AACTTCATTGTGAATCTGTT+GGG | - | chr8.1:53293417-53293436 | MS.gene007853:CDS | 30.0% | |
| CATAATAAAACTCTACTACC+TGG | + | chr8.1:53293304-53293323 | None:intergenic | 30.0% | |
| CTAATTGTGATATACTTCCA+AGG | - | chr8.1:53293143-53293162 | MS.gene007853:CDS | 30.0% | |
| CTGTTCTAGTAATCAACAAA+TGG | + | chr8.1:53293040-53293059 | None:intergenic | 30.0% | |
| GAAAATTCTCTATTACCTAG+AGG | + | chr8.1:53293517-53293536 | None:intergenic | 30.0% | |
| GATGCAGTGAAAACATTATA+TGG | - | chr8.1:53292943-53292962 | MS.gene007853:CDS | 30.0% | |
| TGTTACTGCAAGTAATATTC+CGG | + | chr8.1:53294399-53294418 | None:intergenic | 30.0% | |
| ! | CTTGGAAGTATATCACAATT+AGG | + | chr8.1:53293145-53293164 | None:intergenic | 30.0% |
| !! | AATCCAAGTTTTTGAGAACA+AGG | + | chr8.1:53293748-53293767 | None:intergenic | 30.0% |
| !! | ACAATCATTTTTCAACTTGC+AGG | - | chr8.1:53294226-53294245 | MS.gene007853:CDS | 30.0% |
| !! | TTTTGTTTAGTAGTTGCAAC+AGG | + | chr8.1:53292873-53292892 | None:intergenic | 30.0% |
| !!! | CAGGTAGTAGAGTTTTATTA+TGG | - | chr8.1:53293302-53293321 | MS.gene007853:intron | 30.0% |
| AAAAATGAAGAGGGAGATCA+CGG | + | chr8.1:53292285-53292304 | None:intergenic | 35.0% | |
| AAAACCAATCAGTTCACTCA+TGG | + | chr8.1:53294182-53294201 | None:intergenic | 35.0% | |
| AAAACTTGGATTGAAGTCTC+TGG | - | chr8.1:53293756-53293775 | MS.gene007853:intron | 35.0% | |
| AAGAGCAGACTGAAGAATAA+TGG | + | chr8.1:53293258-53293277 | None:intergenic | 35.0% | |
| AGAGCAGACTGAAGAATAAT+GGG | + | chr8.1:53293257-53293276 | None:intergenic | 35.0% | |
| ATAACACGCATCCAATAGAA+TGG | + | chr8.1:53292362-53292381 | None:intergenic | 35.0% | |
| ATGCTGACAACATAAACACA+AGG | + | chr8.1:53293722-53293741 | None:intergenic | 35.0% | |
| CTTCAAAAAGGCTATGGTTT+GGG | - | chr8.1:53292786-53292805 | MS.gene007853:intron | 35.0% | |
| GAGGTGTAAAACAGTTTGAT+TGG | + | chr8.1:53293227-53293246 | None:intergenic | 35.0% | |
| GTTGATTACTAGAACAGACA+AGG | - | chr8.1:53293043-53293062 | MS.gene007853:intron | 35.0% | |
| TATGGAATACACTCAACAAC+AGG | - | chr8.1:53292329-53292348 | MS.gene007853:CDS | 35.0% | |
| TATTCATTGCCACCAATATC+TGG | - | chr8.1:53292823-53292842 | MS.gene007853:intron | 35.0% | |
| TCAGGAAGGAATGATAGAAA+TGG | + | chr8.1:53292212-53292231 | None:intergenic | 35.0% | |
| TTAGATGAGCTCCTTCAAAA+AGG | - | chr8.1:53292774-53292793 | MS.gene007853:intron | 35.0% | |
| TTAGTTATGAACATGTGCTG+AGG | + | chr8.1:53293900-53293919 | None:intergenic | 35.0% | |
| ! | AGAAGTGAATAGCCTTAAGA+CGG | + | chr8.1:53294128-53294147 | None:intergenic | 35.0% |
| ! | GTTTTACAGCTTAGCTGATA+TGG | - | chr8.1:53293668-53293687 | MS.gene007853:CDS | 35.0% |
| ! | TATGTTCTGTCTGGAATGTA+CGG | - | chr8.1:53292672-53292691 | MS.gene007853:intron | 35.0% |
| ! | TTAGGGTACTTCACTTAGTA+AGG | - | chr8.1:53292186-53292205 | MS.gene007853:CDS | 35.0% |
| !! | ACAGTATTGGCAGATTTCAT+GGG | - | chr8.1:53294356-53294375 | MS.gene007853:CDS | 35.0% |
| !! | GTACTTTGAGACATTTGAGA+AGG | - | chr8.1:53294430-53294449 | MS.gene007853:CDS | 35.0% |
| AAATTTGATTCCCGATGACC+AGG | + | chr8.1:53294269-53294288 | None:intergenic | 40.0% | |
| AAGGAATCTGAATATGGAGG+TGG | - | chr8.1:53293447-53293466 | MS.gene007853:CDS | 40.0% | |
| AAGTCCATGAGTGAACTGAT+TGG | - | chr8.1:53294175-53294194 | MS.gene007853:CDS | 40.0% | |
| AATCTGTACCTTCAACTGCT+TGG | + | chr8.1:53293802-53293821 | None:intergenic | 40.0% | |
| ACAAGACCAGAAGTGACAAT+GGG | + | chr8.1:53292428-53292447 | None:intergenic | 40.0% | |
| ACACAAGGTAGAACAATGCA+TGG | + | chr8.1:53293707-53293726 | None:intergenic | 40.0% | |
| ACTATATAACTGCACCCTCT+AGG | - | chr8.1:53293499-53293518 | MS.gene007853:CDS | 40.0% | |
| ACTTCATAAATAGGTCACGC+TGG | + | chr8.1:53293945-53293964 | None:intergenic | 40.0% | |
| AGCTAGCAGATTTGTGACAT+TGG | + | chr8.1:53293108-53293127 | None:intergenic | 40.0% | |
| AGGTAGAACAATGCATGGAA+AGG | + | chr8.1:53293702-53293721 | None:intergenic | 40.0% | |
| CAACTTGCAGGAACAACAAA+TGG | - | chr8.1:53294238-53294257 | MS.gene007853:CDS | 40.0% | |
| CAATCTCTACTTCATTTCCC+AGG | - | chr8.1:53293283-53293302 | MS.gene007853:intron | 40.0% | |
| CCTTCAAAAAGGCTATGGTT+TGG | - | chr8.1:53292785-53292804 | MS.gene007853:intron | 40.0% | |
| CTGCTACACAGAAAATACAG+TGG | - | chr8.1:53293393-53293412 | MS.gene007853:CDS | 40.0% | |
| CTGGGAAATGAAGTAGAGAT+TGG | + | chr8.1:53293285-53293304 | None:intergenic | 40.0% | |
| GAAATCTGCCAATACTGTCA+GGG | + | chr8.1:53294354-53294373 | None:intergenic | 40.0% | |
| GAACAATGCATGGAAAGGAT+TGG | + | chr8.1:53293697-53293716 | None:intergenic | 40.0% | |
| GCTAGCAGATTTGTGACATT+GGG | + | chr8.1:53293107-53293126 | None:intergenic | 40.0% | |
| GTACATTCCAGACAGAACAT+AGG | + | chr8.1:53292673-53292692 | None:intergenic | 40.0% | |
| GTTGAGTGTATTCCATACAG+AGG | + | chr8.1:53292326-53292345 | None:intergenic | 40.0% | |
| TACAAGACCAGAAGTGACAA+TGG | + | chr8.1:53292429-53292448 | None:intergenic | 40.0% | |
| TGAAATCTGCCAATACTGTC+AGG | + | chr8.1:53294355-53294374 | None:intergenic | 40.0% | |
| TGGAAGGAATCTGAATATGG+AGG | - | chr8.1:53293444-53293463 | MS.gene007853:CDS | 40.0% | |
| TTACTCTTTGCTCCCAGAAA+CGG | - | chr8.1:53292600-53292619 | MS.gene007853:intron | 40.0% | |
| TTCAAACCGTGGAACTGTTA+TGG | - | chr8.1:53292388-53292407 | MS.gene007853:CDS | 40.0% | |
| TTGTGAATCTGTTGGGCAAA+TGG | - | chr8.1:53293424-53293443 | MS.gene007853:CDS | 40.0% | |
| ! | AAATGGTAATGCCTGGTCAT+CGG | - | chr8.1:53294255-53294274 | MS.gene007853:CDS | 40.0% |
| ! | CCAAACCATAGCCTTTTTGA+AGG | + | chr8.1:53292788-53292807 | None:intergenic | 40.0% |
| ! | GAACAACAAATGGTAATGCC+TGG | - | chr8.1:53294248-53294267 | MS.gene007853:CDS | 40.0% |
| ! | GTGCCTTGTTCTCAAAAACT+TGG | - | chr8.1:53293742-53293761 | MS.gene007853:intron | 40.0% |
| !! | AAGAATAATGGGCATGTTGG+AGG | + | chr8.1:53293246-53293265 | None:intergenic | 40.0% |
| !! | CTGAAGAATAATGGGCATGT+TGG | + | chr8.1:53293249-53293268 | None:intergenic | 40.0% |
| !! | GACAGTATTGGCAGATTTCA+TGG | - | chr8.1:53294355-53294374 | MS.gene007853:CDS | 40.0% |
| !! | TGCAGTTGATAACCGTCTTA+AGG | - | chr8.1:53294113-53294132 | MS.gene007853:intron | 40.0% |
| !!! | TGGTCTTGTAATGCAGCTTT+TGG | - | chr8.1:53292439-53292458 | MS.gene007853:intron | 40.0% |
| AAAAGAGCTGGAGGATGATG+AGG | + | chr8.1:53292731-53292750 | None:intergenic | 45.0% | |
| AAGACCAGAAGTGACAATGG+GGG | + | chr8.1:53292426-53292445 | None:intergenic | 45.0% | |
| ACAACCATTAACAGTGGTCG+GGG | - | chr8.1:53292981-53293000 | MS.gene007853:intron | 45.0% | |
| ACCTTACAGGCAAAACCACA+CGG | + | chr8.1:53293172-53293191 | None:intergenic | 45.0% | |
| AGATGTTGCCAAGCAGTTGA+AGG | - | chr8.1:53293791-53293810 | MS.gene007853:intron | 45.0% | |
| AGTCCCACAACCATTAACAG+TGG | - | chr8.1:53292975-53292994 | MS.gene007853:intron | 45.0% | |
| ATACTTCCAAGGTTTCCGTG+TGG | - | chr8.1:53293154-53293173 | MS.gene007853:CDS | 45.0% | |
| CAAGACCAGAAGTGACAATG+GGG | + | chr8.1:53292427-53292446 | None:intergenic | 45.0% | |
| CAAGCTCCATAACAGTTCCA+CGG | + | chr8.1:53292397-53292416 | None:intergenic | 45.0% | |
| CACAACCATTAACAGTGGTC+GGG | - | chr8.1:53292980-53292999 | MS.gene007853:intron | 45.0% | |
| CAGCAGCAGTGGGAATATAT+CGG | + | chr8.1:53294307-53294326 | None:intergenic | 45.0% | |
| CAGGTGCAGATCCATTCTAT+TGG | - | chr8.1:53292348-53292367 | MS.gene007853:CDS | 45.0% | |
| CCACAACCATTAACAGTGGT+CGG | - | chr8.1:53292979-53292998 | MS.gene007853:intron | 45.0% | |
| CCGGTAAAATGCTTCCCTAA+GGG | + | chr8.1:53293075-53293094 | None:intergenic | 45.0% | |
| CGACCACTGTTAATGGTTGT+GGG | + | chr8.1:53292981-53293000 | None:intergenic | 45.0% | |
| GAATCTGTTGGGCAAATGGA+AGG | - | chr8.1:53293428-53293447 | MS.gene007853:CDS | 45.0% | |
| GAGCTCCTTCAAAAAGGCTA+TGG | - | chr8.1:53292780-53292799 | MS.gene007853:intron | 45.0% | |
| GCAGATTTCATGGGTGCAAT+TGG | - | chr8.1:53294365-53294384 | MS.gene007853:CDS | 45.0% | |
| GTTATCCTTGCTTCAAACCG+TGG | - | chr8.1:53292377-53292396 | MS.gene007853:CDS | 45.0% | |
| TAGTATGCAATGCCACCAAC+AGG | + | chr8.1:53293483-53293502 | None:intergenic | 45.0% | |
| TGACATTGGGAAGATTCTGC+CGG | + | chr8.1:53293094-53293113 | None:intergenic | 45.0% | |
| TGATACCGGCAAAAAAGAGC+TGG | + | chr8.1:53292743-53292762 | None:intergenic | 45.0% | |
| TGCAAGTAATATTCCGGTCC+CGG | + | chr8.1:53294393-53294412 | None:intergenic | 45.0% | |
| TGTAGTCAGCTTCCTCTGTA+TGG | - | chr8.1:53292311-53292330 | MS.gene007853:CDS | 45.0% | |
| ! | AAAGGCTATGGTTTGGGATC+TGG | - | chr8.1:53292792-53292811 | MS.gene007853:intron | 45.0% |
| ! | AATGGTAATGCCTGGTCATC+GGG | - | chr8.1:53294256-53294275 | MS.gene007853:CDS | 45.0% |
| ! | CATCTTGATAGCTGTTGGAG+AGG | - | chr8.1:53292641-53292660 | MS.gene007853:intron | 45.0% |
| ! | CTTGGCATCTTGATAGCTGT+TGG | - | chr8.1:53292636-53292655 | MS.gene007853:intron | 45.0% |
| ! | CTTGTAATGCAGCTTTTGGC+TGG | - | chr8.1:53292443-53292462 | MS.gene007853:intron | 45.0% |
| ! | GCATTTGGAGGCATGTGTAT+TGG | - | chr8.1:53294326-53294345 | MS.gene007853:CDS | 45.0% |
| ! | TCTGGAATGTACGGTAGTGT+AGG | - | chr8.1:53292681-53292700 | MS.gene007853:intron | 45.0% |
| ! | TTCATGGGTGCAATTGGTTC+CGG | - | chr8.1:53294371-53294390 | MS.gene007853:CDS | 45.0% |
| !! | GAAAGTGCCGTTTAGAGAGA+AGG | - | chr8.1:53292250-53292269 | MS.gene007853:CDS | 45.0% |
| !!! | ATCCTCCAGCTCTTTTTTGC+CGG | - | chr8.1:53292735-53292754 | MS.gene007853:intron | 45.0% |
| !!! | CCCTTAGGGAAGCATTTTAC+CGG | - | chr8.1:53293072-53293091 | MS.gene007853:intron | 45.0% |
| !! | TTATATAAAAACAAAATTTA+AGG | - | chr8.1:53292905-53292924 | MS.gene007853:CDS | 5.0% |
| !!! | AATTTTGTTTTTATATAAAA+AGG | + | chr8.1:53292903-53292922 | None:intergenic | 5.0% |
| AACGGTGCACAGAAGCTACT+TGG | - | chr8.1:53292618-53292637 | MS.gene007853:intron | 50.0% | |
| ACCAAAGAAACCAAGCTCGC+TGG | + | chr8.1:53294462-53294481 | None:intergenic | 50.0% | |
| AGACAAGGTTCGTGCCCTTA+GGG | - | chr8.1:53293058-53293077 | MS.gene007853:intron | 50.0% | |
| AGCTTCTGTGCACCGTTTCT+GGG | + | chr8.1:53292615-53292634 | None:intergenic | 50.0% | |
| AGTCGACAACAATGTCCGTG+AGG | - | chr8.1:53292481-53292500 | MS.gene007853:intron | 50.0% | |
| ATATGAACCCTGCTGTCCAC+GGG | + | chr8.1:53293204-53293223 | None:intergenic | 50.0% | |
| ATTCCCACTGCTGCTGCATT+TGG | - | chr8.1:53294311-53294330 | MS.gene007853:CDS | 50.0% | |
| CCGACCACTGTTAATGGTTG+TGG | + | chr8.1:53292982-53293001 | None:intergenic | 50.0% | |
| CGGGCATTCTTTGACCTTAC+AGG | + | chr8.1:53293185-53293204 | None:intergenic | 50.0% | |
| CGTGGAACTGTTATGGAGCT+TGG | - | chr8.1:53292395-53292414 | MS.gene007853:intron | 50.0% | |
| GATATGAACCCTGCTGTCCA+CGG | + | chr8.1:53293205-53293224 | None:intergenic | 50.0% | |
| GCAAAACCACACGGAAACCT+TGG | + | chr8.1:53293163-53293182 | None:intergenic | 50.0% | |
| GCCGGTAAAATGCTTCCCTA+AGG | + | chr8.1:53293076-53293095 | None:intergenic | 50.0% | |
| GCTGTTGCCTATGTTCTGTC+TGG | - | chr8.1:53292663-53292682 | MS.gene007853:intron | 50.0% | |
| GGTCACTCTATTCCTGTTGG+TGG | - | chr8.1:53293468-53293487 | MS.gene007853:CDS | 50.0% | |
| GGTGGTCACTCTATTCCTGT+TGG | - | chr8.1:53293465-53293484 | MS.gene007853:CDS | 50.0% | |
| GTAAGGTCAAAGAATGCCCG+TGG | - | chr8.1:53293185-53293204 | MS.gene007853:CDS | 50.0% | |
| TACCGGCAAAAAAGAGCTGG+AGG | + | chr8.1:53292740-53292759 | None:intergenic | 50.0% | |
| TAGCTTCTGTGCACCGTTTC+TGG | + | chr8.1:53292616-53292635 | None:intergenic | 50.0% | |
| TATTGGCGCCCTGACAGTAT+TGG | - | chr8.1:53294343-53294362 | MS.gene007853:CDS | 50.0% | |
| ! | ACAAGAGAGCACGATCCTCA+CGG | + | chr8.1:53292499-53292518 | None:intergenic | 50.0% |
| ! | ATCACCCCCATTGTCACTTC+TGG | - | chr8.1:53292419-53292438 | MS.gene007853:intron | 50.0% |
| ! | CAGTTCCACGGTTTGAAGCA+AGG | + | chr8.1:53292385-53292404 | None:intergenic | 50.0% |
| ! | TCATGGGTGCAATTGGTTCC+GGG | - | chr8.1:53294372-53294391 | MS.gene007853:CDS | 50.0% |
| !! | TCCGTGTGGTTTTGCCTGTA+AGG | - | chr8.1:53293168-53293187 | MS.gene007853:CDS | 50.0% |
| AAACGGCACTTTCCTGTCCG+CGG | + | chr8.1:53292243-53292262 | None:intergenic | 55.0% | |
| AAAGAATGCCCGTGGACAGC+AGG | - | chr8.1:53293193-53293212 | MS.gene007853:CDS | 55.0% | |
| AAGAATGCCCGTGGACAGCA+GGG | - | chr8.1:53293194-53293213 | MS.gene007853:CDS | 55.0% | |
| AAGGAAAGAGCCAGCGAGCT+TGG | - | chr8.1:53294449-53294468 | MS.gene007853:CDS | 55.0% | |
| AGCTCCCCGACCACTGTTAA+TGG | + | chr8.1:53292988-53293007 | None:intergenic | 55.0% | |
| AGTGTAGGCCAGCTTGGAGT+GGG | - | chr8.1:53292696-53292715 | MS.gene007853:intron | 55.0% | |
| CAGACAAGGTTCGTGCCCTT+AGG | - | chr8.1:53293057-53293076 | MS.gene007853:intron | 55.0% | |
| CCTCCAAATGCAGCAGCAGT+GGG | + | chr8.1:53294317-53294336 | None:intergenic | 55.0% | |
| CCTTCCTGAAGTTCAGACCG+CGG | - | chr8.1:53292223-53292242 | MS.gene007853:CDS | 55.0% | |
| GAGCTGGAGGATGATGAGGA+TGG | + | chr8.1:53292727-53292746 | None:intergenic | 55.0% | |
| GCCAGCGAGCTTGGTTTCTT+TGG | - | chr8.1:53294458-53294477 | MS.gene007853:CDS | 55.0% | |
| GGTCGGGGAGCTGAATTTGA+GGG | - | chr8.1:53292996-53293015 | MS.gene007853:intron | 55.0% | |
| TACGGTAGTGTAGGCCAGCT+TGG | - | chr8.1:53292690-53292709 | MS.gene007853:intron | 55.0% | |
| TAGTGTAGGCCAGCTTGGAG+TGG | - | chr8.1:53292695-53292714 | MS.gene007853:intron | 55.0% | |
| TGGCATTTCCCACTCCAAGC+TGG | + | chr8.1:53292707-53292726 | None:intergenic | 55.0% | |
| TGGTCGGGGAGCTGAATTTG+AGG | - | chr8.1:53292995-53293014 | MS.gene007853:intron | 55.0% | |
| CCCACTGCTGCTGCATTTGG+AGG | - | chr8.1:53294314-53294333 | MS.gene007853:CDS | 60.0% | |
| CCGCGGTCTGAACTTCAGGA+AGG | + | chr8.1:53292226-53292245 | None:intergenic | 60.0% | |
| CTGAAGTTCAGACCGCGGAC+AGG | - | chr8.1:53292228-53292247 | MS.gene007853:CDS | 60.0% | |
| CTGTCCGCGGTCTGAACTTC+AGG | + | chr8.1:53292230-53292249 | None:intergenic | 60.0% | |
| GCCTCCAAATGCAGCAGCAG+TGG | + | chr8.1:53294318-53294337 | None:intergenic | 60.0% | |
| ! | GGTGCAATTGGTTCCGGGAC+CGG | - | chr8.1:53294377-53294396 | MS.gene007853:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 53292173 | 53294487 | 53292173 | ID=MS.gene007853 |
| chr8.1 | mRNA | 53292173 | 53294487 | 53292173 | ID=MS.gene007853.t1;Parent=MS.gene007853 |
| chr8.1 | exon | 53294144 | 53294487 | 53294144 | ID=MS.gene007853.t1.exon1;Parent=MS.gene007853.t1 |
| chr8.1 | CDS | 53294144 | 53294487 | 53294144 | ID=cds.MS.gene007853.t1;Parent=MS.gene007853.t1 |
| chr8.1 | exon | 53293816 | 53294043 | 53293816 | ID=MS.gene007853.t1.exon2;Parent=MS.gene007853.t1 |
| chr8.1 | CDS | 53293816 | 53294043 | 53293816 | ID=cds.MS.gene007853.t1;Parent=MS.gene007853.t1 |
| chr8.1 | exon | 53293356 | 53293710 | 53293356 | ID=MS.gene007853.t1.exon3;Parent=MS.gene007853.t1 |
| chr8.1 | CDS | 53293356 | 53293710 | 53293356 | ID=cds.MS.gene007853.t1;Parent=MS.gene007853.t1 |
| chr8.1 | exon | 53293140 | 53293267 | 53293140 | ID=MS.gene007853.t1.exon4;Parent=MS.gene007853.t1 |
| chr8.1 | CDS | 53293140 | 53293267 | 53293140 | ID=cds.MS.gene007853.t1;Parent=MS.gene007853.t1 |
| chr8.1 | exon | 53292848 | 53292983 | 53292848 | ID=MS.gene007853.t1.exon5;Parent=MS.gene007853.t1 |
| chr8.1 | CDS | 53292848 | 53292983 | 53292848 | ID=cds.MS.gene007853.t1;Parent=MS.gene007853.t1 |
| chr8.1 | exon | 53292173 | 53292412 | 53292173 | ID=MS.gene007853.t1.exon6;Parent=MS.gene007853.t1 |
| chr8.1 | CDS | 53292173 | 53292412 | 53292173 | ID=cds.MS.gene007853.t1;Parent=MS.gene007853.t1 |
| Gene Sequence |
| Protein sequence |
